Query psy4900
Match_columns 485
No_of_seqs 394 out of 2614
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 20:45:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4900.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4900hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m0c_C LDL receptor, low-densi 100.0 1.2E-62 4.1E-67 539.7 16.4 402 10-482 104-598 (791)
2 1n7d_A LDL receptor, low-densi 100.0 2.6E-60 8.9E-65 518.6 34.3 401 10-481 86-579 (699)
3 3m0c_C LDL receptor, low-densi 100.0 6.5E-59 2.2E-63 510.2 17.8 444 9-482 21-555 (791)
4 1n7d_A LDL receptor, low-densi 100.0 1.2E-56 4.3E-61 489.5 31.5 442 10-482 45-537 (699)
5 3p5b_L Low density lipoprotein 100.0 5.4E-32 1.8E-36 276.8 17.9 241 183-482 9-286 (400)
6 3v65_B Low-density lipoprotein 100.0 2E-31 6.8E-36 271.4 14.4 242 183-482 12-286 (386)
7 3v64_C Agrin; beta propeller, 99.9 2.6E-26 8.7E-31 230.5 13.2 208 261-482 3-243 (349)
8 3s94_A LRP-6, low-density lipo 99.9 3.6E-25 1.2E-29 237.9 18.2 218 253-482 266-519 (619)
9 4a0p_A LRP6, LRP-6, low-densit 99.9 5.1E-25 1.8E-29 236.9 16.8 210 258-481 264-516 (628)
10 3p5b_L Low density lipoprotein 99.9 4.6E-24 1.6E-28 218.0 17.2 211 261-482 2-243 (400)
11 3v65_B Low-density lipoprotein 99.9 2E-24 6.9E-29 219.6 13.1 213 260-482 4-243 (386)
12 2fyj_A Low-density lipoprotein 99.8 9.1E-20 3.1E-24 141.6 7.3 77 54-131 3-81 (82)
13 2fyj_A Low-density lipoprotein 99.8 1.4E-19 4.6E-24 140.6 8.0 78 9-92 2-81 (82)
14 3sov_A LRP-6, low-density lipo 99.8 6.4E-19 2.2E-23 174.2 11.6 112 366-481 89-205 (318)
15 2fcw_B LDL receptor, low-densi 99.8 6.5E-20 2.2E-24 141.3 2.9 76 55-131 2-79 (80)
16 2fcw_B LDL receptor, low-densi 99.8 1.9E-19 6.5E-24 138.7 3.4 75 11-91 2-78 (80)
17 1ijq_A LDL receptor, low-densi 99.7 5.9E-18 2E-22 167.1 12.1 113 366-482 87-204 (316)
18 3s94_A LRP-6, low-density lipo 99.7 3.2E-18 1.1E-22 183.9 10.4 112 366-481 94-210 (619)
19 4a0p_A LRP6, LRP-6, low-densit 99.7 7.7E-18 2.6E-22 181.1 12.2 112 366-482 90-206 (628)
20 3v64_C Agrin; beta propeller, 99.7 1.2E-16 3.9E-21 160.1 11.9 116 362-481 79-199 (349)
21 3sov_A LRP-6, low-density lipo 99.7 2.7E-16 9.2E-21 155.3 10.7 118 361-482 40-163 (318)
22 1ijq_A LDL receptor, low-densi 99.6 1.2E-15 4E-20 150.6 12.9 116 362-481 36-160 (316)
23 1npe_A Nidogen, entactin; glyc 99.5 6.6E-14 2.2E-18 134.1 11.1 115 364-482 87-207 (267)
24 1npe_A Nidogen, entactin; glyc 99.5 1.9E-13 6.6E-18 130.8 12.6 115 363-481 43-163 (267)
25 3s25_A Hypothetical 7-bladed b 99.3 5E-12 1.7E-16 123.5 7.9 106 364-482 153-264 (302)
26 2xrc_A Human complement factor 99.3 1.6E-12 5.6E-17 137.8 3.6 99 22-132 179-277 (565)
27 2xrc_A Human complement factor 99.2 1E-11 3.6E-16 131.6 5.5 100 60-174 175-274 (565)
28 2gtl_O Extracellular hemoglobi 99.2 1.2E-13 3.9E-18 125.0 -8.5 120 33-174 37-170 (215)
29 3s25_A Hypothetical 7-bladed b 99.1 4.5E-11 1.5E-15 116.7 7.6 104 364-481 192-301 (302)
30 2gtl_O Extracellular hemoglobi 99.1 5.1E-12 1.7E-16 114.3 -2.3 117 10-144 53-185 (215)
31 2kny_A LRP-1, linker, APO-E; l 99.0 1.2E-10 4.1E-15 89.1 2.4 65 90-160 3-74 (80)
32 1ajj_A LR5, low-density lipopr 99.0 3.8E-10 1.3E-14 73.0 3.6 37 11-49 1-37 (37)
33 2kny_A LRP-1, linker, APO-E; l 99.0 1.8E-10 6.1E-15 88.2 2.2 66 47-116 3-75 (80)
34 1ajj_A LR5, low-density lipopr 99.0 2.9E-10 1E-14 73.5 2.9 35 96-130 2-36 (37)
35 1cr8_A Protein (LOW density li 98.9 1E-09 3.4E-14 73.1 4.2 39 10-49 2-40 (42)
36 2jm4_A Relaxin receptor 1; LDL 98.9 1E-09 3.5E-14 73.5 3.9 39 9-49 4-43 (43)
37 3dpr_E LDL-receptor class A 3; 98.9 1.1E-09 3.7E-14 71.7 3.9 36 96-131 1-38 (39)
38 1z6c_A Vitamin K-dependent pro 98.9 6.3E-10 2.2E-14 87.4 3.1 69 185-304 15-85 (87)
39 2jm4_A Relaxin receptor 1; LDL 98.9 8.6E-10 2.9E-14 73.9 3.3 36 95-130 6-42 (43)
40 1cr8_A Protein (LOW density li 98.9 1.2E-09 4E-14 72.8 3.9 37 95-131 3-40 (42)
41 3a7q_B Low-density lipoprotein 98.9 7.1E-10 2.4E-14 74.7 2.8 37 95-131 7-43 (44)
42 1k7b_A Subgroup A ROUS sarcoma 98.9 5.7E-10 2E-14 76.4 1.9 41 9-49 4-47 (47)
43 1d2l_A Lipoprotein receptor re 98.9 1.5E-09 5.1E-14 73.2 3.9 39 9-49 3-41 (45)
44 1d2l_A Lipoprotein receptor re 98.9 8.6E-10 3E-14 74.4 2.7 36 95-130 5-40 (45)
45 3a7q_B Low-density lipoprotein 98.9 1.2E-09 4E-14 73.6 3.3 39 9-49 5-43 (44)
46 2m0p_A Low-density lipoprotein 98.9 8.6E-10 3E-14 76.3 2.5 41 8-50 3-43 (52)
47 2knx_A Prolow-density lipoprot 98.8 2.3E-09 7.8E-14 74.0 4.5 40 9-49 4-43 (50)
48 1k7b_A Subgroup A ROUS sarcoma 98.8 9.6E-10 3.3E-14 75.3 2.5 37 94-130 5-46 (47)
49 2w2n_E LDL receptor, low-densi 98.8 4.7E-10 1.6E-14 91.7 1.0 70 183-303 38-107 (107)
50 1lmj_A Fibrillin 1; EGF, calci 98.8 5.6E-10 1.9E-14 87.5 1.3 68 187-303 17-86 (86)
51 3dpr_E LDL-receptor class A 3; 98.8 1.6E-09 5.6E-14 70.8 3.3 38 12-49 1-38 (39)
52 2i1p_A Low-density lipoprotein 98.8 1.2E-09 4.1E-14 75.0 1.3 38 94-131 5-43 (48)
53 2m0p_A Low-density lipoprotein 98.8 2E-09 6.8E-14 74.4 2.2 37 54-91 5-41 (52)
54 1jrf_A TVA LDL-A module, subgr 98.7 2.3E-09 7.8E-14 73.4 1.7 37 95-131 4-45 (47)
55 2i1p_A Low-density lipoprotein 98.7 2.5E-09 8.5E-14 73.5 1.8 39 10-50 5-44 (48)
56 1j8e_A Low-density lipoprotein 98.7 2.3E-09 7.9E-14 72.1 1.0 35 95-129 4-38 (44)
57 3tc9_A Hypothetical hydrolase; 98.7 2.7E-08 9.1E-13 102.1 9.2 105 364-474 187-302 (430)
58 1emn_A Fibrillin; extracellula 98.7 9.5E-09 3.2E-13 79.7 4.2 67 183-302 13-81 (82)
59 2knx_A Prolow-density lipoprot 98.7 3E-09 1E-13 73.4 1.2 36 95-130 6-42 (50)
60 1j8e_A Low-density lipoprotein 98.7 4.2E-09 1.4E-13 70.9 1.8 38 9-48 2-39 (44)
61 1jrf_A TVA LDL-A module, subgr 98.7 2.5E-09 8.7E-14 73.2 0.2 40 10-49 3-45 (47)
62 3fvz_A Peptidyl-glycine alpha- 98.7 4.2E-08 1.4E-12 96.5 8.7 108 368-479 102-234 (329)
63 1dx5_I Thrombomodulin; serine 98.6 1.5E-09 5.2E-14 90.4 -1.8 73 178-302 45-118 (118)
64 1x7a_L Coagulation factor IX, 98.6 1.7E-08 5.9E-13 87.2 2.9 66 186-304 60-126 (146)
65 3hrp_A Uncharacterized protein 98.5 7.3E-07 2.5E-11 90.7 12.5 109 364-479 227-360 (409)
66 3hrp_A Uncharacterized protein 98.5 5.6E-07 1.9E-11 91.5 11.3 109 362-474 177-299 (409)
67 3tc9_A Hypothetical hydrolase; 98.5 3.1E-07 1E-11 94.1 8.6 107 366-479 148-263 (430)
68 4hw6_A Hypothetical protein, I 98.4 3.3E-07 1.1E-11 94.0 8.4 76 399-474 226-305 (433)
69 1nfu_B Coagulation factor XA, 98.4 3.8E-08 1.3E-12 88.8 0.2 73 179-304 45-121 (195)
70 1aut_L Activated protein C; se 98.4 1.2E-07 4E-12 78.4 3.2 69 186-304 26-94 (114)
71 2gtl_N Extracellular hemoglobi 98.4 1.6E-07 5.4E-12 84.2 4.1 59 9-71 50-113 (220)
72 2gtl_N Extracellular hemoglobi 98.4 1.4E-07 4.9E-12 84.4 3.1 52 94-145 51-109 (220)
73 2vh0_B Activated factor XA lig 98.3 5.7E-08 2E-12 82.7 0.2 66 186-304 54-121 (134)
74 2bou_A EGF-like module contain 98.3 1E-07 3.5E-12 82.1 1.7 70 186-304 59-138 (143)
75 3fvz_A Peptidyl-glycine alpha- 98.3 1.3E-06 4.5E-11 85.7 9.9 99 377-479 70-181 (329)
76 4hw6_A Hypothetical protein, I 98.3 2.4E-06 8.3E-11 87.5 12.2 108 365-475 237-376 (433)
77 2w86_A Fibrillin-1, fibrillin1 98.3 1E-07 3.5E-12 82.5 -0.0 119 179-303 7-147 (147)
78 2c4f_L Coagulation factor VII 98.3 2.2E-07 7.6E-12 79.9 1.7 69 186-304 59-129 (142)
79 1kig_L Factor XA; glycoprotein 98.2 3.3E-07 1.1E-11 63.7 1.9 36 264-304 3-38 (51)
80 1kli_L Factor VIIA; extrinsic 98.2 2.3E-07 8E-12 68.8 1.0 44 259-307 5-50 (69)
81 2jkh_L Factor X light chain; p 98.2 2.2E-07 7.4E-12 65.9 0.7 43 261-308 3-46 (55)
82 2gtl_M Hemoglobin linker chain 98.2 6.4E-07 2.2E-11 81.0 3.0 41 93-133 51-95 (217)
83 3kya_A Putative phosphatase; s 98.2 3.4E-06 1.2E-10 87.1 8.6 108 363-475 317-477 (496)
84 1rwi_B Serine/threonine-protei 98.2 3.4E-06 1.2E-10 79.4 7.7 106 368-479 119-228 (270)
85 2bz6_L Blood coagulation facto 98.1 3.4E-07 1.2E-11 64.2 0.5 41 262-307 2-44 (53)
86 2gtl_M Hemoglobin linker chain 98.1 1.3E-06 4.6E-11 78.9 3.2 42 9-50 51-94 (217)
87 1q7f_A NHL, brain tumor CG1071 98.0 1.1E-05 3.7E-10 76.8 8.9 107 367-479 88-200 (286)
88 1rwi_B Serine/threonine-protei 98.0 5E-06 1.7E-10 78.2 6.0 103 368-476 161-267 (270)
89 3kya_A Putative phosphatase; s 98.0 1.6E-05 5.6E-10 82.1 10.2 77 399-475 245-343 (496)
90 3h5c_B Vitamin K-dependent pro 98.0 4.4E-06 1.5E-10 81.8 5.6 73 179-304 8-84 (317)
91 2fp8_A Strictosidine synthase; 98.0 1E-05 3.5E-10 78.9 8.2 103 367-474 91-217 (322)
92 1q7f_A NHL, brain tumor CG1071 98.0 2.2E-05 7.6E-10 74.6 10.2 107 368-480 132-245 (286)
93 2vj3_A Neurogenic locus notch 98.0 5.2E-06 1.8E-10 70.6 5.0 70 186-314 57-131 (135)
94 1yo8_A Thrombospondin-2; EGF, 97.9 4.6E-06 1.6E-10 88.1 4.5 86 179-315 6-113 (634)
95 2qc5_A Streptogramin B lactona 97.9 3.3E-05 1.1E-09 73.4 9.8 104 368-477 157-264 (300)
96 3a9g_A Putative uncharacterize 97.9 2.3E-05 7.7E-10 78.0 8.7 115 363-485 36-198 (354)
97 3ojy_B Complement component C8 97.9 8.3E-06 2.8E-10 85.3 5.4 46 99-155 69-115 (537)
98 1dx5_I Thrombomodulin; serine 97.9 1.1E-06 3.7E-11 73.0 -1.4 76 179-308 7-84 (118)
99 1z1y_A Ookinete surface protei 97.9 8.5E-07 2.9E-11 79.9 -2.3 62 186-299 103-174 (186)
100 2wph_E Coagulation factor IXA 97.9 4.3E-06 1.5E-10 59.9 1.8 36 182-217 7-43 (59)
101 2wph_E Coagulation factor IXA 97.9 2.3E-06 8E-11 61.3 0.4 38 262-304 2-40 (59)
102 1yo8_A Thrombospondin-2; EGF, 97.9 7.3E-06 2.5E-10 86.6 4.3 70 187-303 62-145 (634)
103 1kig_L Factor XA; glycoprotein 97.8 3.4E-06 1.2E-10 58.5 0.7 37 182-218 6-42 (51)
104 1uzk_A Fibrillin-1; glycoprote 97.8 1.7E-06 5.7E-11 76.1 -1.5 64 191-303 96-162 (162)
105 1uzk_A Fibrillin-1; glycoprote 97.8 9.1E-07 3.1E-11 77.8 -3.3 35 183-217 11-46 (162)
106 2jkh_L Factor X light chain; p 97.8 4.2E-06 1.5E-10 59.1 0.5 37 182-218 9-45 (55)
107 2qc5_A Streptogramin B lactona 97.8 8.3E-05 2.9E-09 70.5 9.8 105 368-478 115-223 (300)
108 2ism_A Putative oxidoreductase 97.8 4.6E-05 1.6E-09 75.6 8.2 103 364-473 39-178 (352)
109 3a9g_A Putative uncharacterize 97.7 8E-05 2.7E-09 74.0 9.2 83 389-474 17-115 (354)
110 3dsm_A Uncharacterized protein 97.7 7.6E-05 2.6E-09 73.0 8.6 100 377-480 204-309 (328)
111 1apq_A Complement protease C1R 97.7 1.3E-05 4.5E-10 56.0 2.1 33 267-304 20-52 (53)
112 4d90_A EGF-like repeat and dis 97.7 4.6E-05 1.6E-09 65.2 5.9 50 190-294 75-127 (143)
113 2bou_A EGF-like module contain 97.7 1.1E-05 3.9E-10 69.1 1.7 91 186-328 13-123 (143)
114 3ojy_A Complement component C8 97.7 2.8E-05 9.7E-10 81.4 5.0 33 59-92 68-101 (554)
115 2fp8_A Strictosidine synthase; 97.6 9E-05 3.1E-09 72.1 8.1 80 398-480 182-276 (322)
116 2z2n_A Virginiamycin B lyase; 97.6 0.00016 5.4E-09 68.5 9.7 103 368-476 152-258 (299)
117 3dr2_A Exported gluconolactona 97.6 0.00018 6.1E-09 69.4 9.9 100 368-474 97-225 (305)
118 3ojy_B Complement component C8 97.6 4.3E-05 1.5E-09 79.8 5.8 67 36-110 43-115 (537)
119 2ism_A Putative oxidoreductase 97.6 9.6E-05 3.3E-09 73.3 7.9 88 391-481 21-125 (352)
120 3ojy_A Complement component C8 97.6 2.8E-05 9.6E-10 81.4 3.8 37 95-132 65-102 (554)
121 2bz6_L Blood coagulation facto 97.6 1E-05 3.6E-10 56.5 0.0 37 182-218 7-44 (53)
122 2z2n_A Virginiamycin B lyase; 97.6 0.00024 8.3E-09 67.2 9.7 103 368-476 110-216 (299)
123 1z1y_A Ookinete surface protei 97.5 8.3E-06 2.8E-10 73.3 -1.3 75 186-308 60-143 (186)
124 1kli_L Factor VIIA; extrinsic 97.5 1.8E-05 6.2E-10 58.5 0.4 37 182-218 13-50 (69)
125 3g4e_A Regucalcin; six bladed 97.5 0.00022 7.7E-09 68.4 8.3 97 377-480 131-237 (297)
126 2g8s_A Glucose/sorbosone dehyd 97.5 0.00017 5.8E-09 71.5 7.4 107 363-474 25-174 (353)
127 2p4o_A Hypothetical protein; p 97.4 0.00023 7.9E-09 68.7 7.9 74 398-476 166-245 (306)
128 1z6c_A Vitamin K-dependent pro 97.4 7.5E-05 2.6E-09 58.1 3.0 38 179-216 48-87 (87)
129 3e5z_A Putative gluconolactona 97.4 0.0006 2E-08 65.0 9.8 79 395-476 22-103 (296)
130 3das_A Putative oxidoreductase 97.3 0.00051 1.7E-08 67.7 8.7 118 363-485 39-203 (347)
131 1apq_A Complement protease C1R 97.2 8.4E-05 2.9E-09 51.8 1.3 33 182-214 20-52 (53)
132 2qe8_A Uncharacterized protein 97.2 0.0013 4.3E-08 64.6 10.2 76 399-475 65-156 (343)
133 2g8s_A Glucose/sorbosone dehyd 97.2 0.00028 9.6E-09 69.9 5.5 92 391-482 8-121 (353)
134 3e5z_A Putative gluconolactona 97.2 0.0018 6.1E-08 61.6 10.9 97 368-472 80-201 (296)
135 2vj3_A Neurogenic locus notch 97.2 0.00034 1.1E-08 59.2 5.0 65 186-309 19-88 (135)
136 2p4o_A Hypothetical protein; p 97.2 0.0012 4.2E-08 63.6 9.6 74 401-478 32-109 (306)
137 3g4e_A Regucalcin; six bladed 97.2 0.0012 4.2E-08 63.2 9.5 108 362-477 19-143 (297)
138 3dr2_A Exported gluconolactona 97.2 0.0013 4.4E-08 63.2 9.4 84 389-476 34-119 (305)
139 1x7a_L Coagulation factor IX, 97.1 0.00021 7.3E-09 61.3 3.0 66 141-217 61-129 (146)
140 1cru_A Protein (soluble quinop 97.0 0.0015 5.2E-08 67.0 9.0 117 364-485 35-229 (454)
141 1cru_A Protein (soluble quinop 97.0 0.0016 5.6E-08 66.7 8.9 92 389-481 15-136 (454)
142 3das_A Putative oxidoreductase 97.0 0.0023 8E-08 62.9 9.4 81 392-473 23-116 (347)
143 4d90_A EGF-like repeat and dis 96.9 0.0021 7.2E-08 54.6 7.8 101 179-327 3-121 (143)
144 1aut_L Activated protein C; se 96.9 0.00064 2.2E-08 55.6 4.1 71 139-217 25-97 (114)
145 1emn_A Fibrillin; extracellula 96.9 0.00044 1.5E-08 53.0 2.9 58 262-328 8-69 (82)
146 3qqz_A Putative uncharacterize 96.9 0.0026 9E-08 59.8 8.7 74 399-474 171-254 (255)
147 2qe8_A Uncharacterized protein 96.9 0.0015 5.3E-08 63.9 7.3 72 402-475 196-281 (343)
148 1lmj_A Fibrillin 1; EGF, calci 96.9 0.00026 8.8E-09 54.8 1.2 63 262-329 6-73 (86)
149 2p9w_A MAL S 1 allergenic prot 96.8 0.0041 1.4E-07 60.5 9.6 112 363-480 20-175 (334)
150 3vgz_A Uncharacterized protein 96.8 0.0098 3.3E-07 57.3 12.6 110 362-475 147-264 (353)
151 2c4f_L Coagulation factor VII 96.8 0.00022 7.5E-09 61.0 0.5 38 180-217 94-132 (142)
152 2dg1_A DRP35, lactonase; beta 96.8 0.0056 1.9E-07 59.0 10.2 106 368-479 56-177 (333)
153 3h5c_B Vitamin K-dependent pro 96.7 0.0023 7.8E-08 62.3 6.6 37 182-218 52-88 (317)
154 1nfu_B Coagulation factor XA, 96.6 0.00031 1.1E-08 63.1 -0.0 68 140-217 54-124 (195)
155 3sre_A PON1, serum paraoxonase 96.6 0.0029 9.8E-08 62.6 6.6 72 398-473 162-252 (355)
156 3vgz_A Uncharacterized protein 96.6 0.019 6.5E-07 55.2 12.4 109 362-475 191-305 (353)
157 2vh0_B Activated factor XA lig 96.5 0.00038 1.3E-08 58.8 -0.0 68 140-217 54-124 (134)
158 1pjx_A Dfpase, DIISOPROPYLFLUO 96.4 0.0044 1.5E-07 59.0 6.8 96 377-479 154-263 (314)
159 1pjx_A Dfpase, DIISOPROPYLFLUO 96.4 0.012 4.2E-07 55.8 9.9 77 396-474 13-102 (314)
160 2dg1_A DRP35, lactonase; beta 96.4 0.022 7.5E-07 54.7 11.7 82 397-480 41-128 (333)
161 2ghs_A AGR_C_1268P; regucalcin 96.3 0.0092 3.1E-07 57.9 8.6 68 401-472 134-209 (326)
162 3dsm_A Uncharacterized protein 96.2 0.016 5.6E-07 56.1 9.8 100 367-474 53-162 (328)
163 3qqz_A Putative uncharacterize 96.2 0.025 8.6E-07 53.0 10.6 77 398-475 24-102 (255)
164 2ghs_A AGR_C_1268P; regucalcin 96.2 0.018 6.3E-07 55.7 9.9 95 377-479 162-266 (326)
165 3t5o_A Complement component C6 96.2 0.0024 8.2E-08 71.1 3.9 34 99-132 121-154 (913)
166 2w2n_E LDL receptor, low-densi 96.2 0.001 3.5E-08 53.7 0.6 60 141-212 42-106 (107)
167 3u4y_A Uncharacterized protein 96.2 0.061 2.1E-06 51.3 13.4 108 362-475 90-209 (331)
168 3f1s_B Vitamin K-dependent pro 96.2 0.0021 7E-08 61.5 2.7 40 260-304 3-43 (283)
169 2p9w_A MAL S 1 allergenic prot 96.1 0.015 5.1E-07 56.5 8.5 70 402-473 138-215 (334)
170 3sre_A PON1, serum paraoxonase 96.0 0.0056 1.9E-07 60.5 4.9 64 395-460 215-284 (355)
171 3scy_A Hypothetical bacterial 95.8 0.054 1.8E-06 52.7 11.2 109 362-472 161-290 (361)
172 3u4y_A Uncharacterized protein 95.7 0.037 1.3E-06 52.8 9.7 104 367-477 9-121 (331)
173 3q6k_A 43.2 kDa salivary prote 95.7 0.06 2.1E-06 53.4 11.1 116 364-482 167-320 (381)
174 1szb_A Mannose binding lectin- 95.7 0.003 1E-07 55.5 1.5 40 260-304 125-167 (170)
175 3hfq_A Uncharacterized protein 95.7 0.029 9.8E-07 54.2 8.8 111 362-473 193-317 (347)
176 1tpg_A T-plasminogen activator 95.7 0.0075 2.5E-07 47.0 3.6 19 186-204 23-41 (91)
177 3t5o_A Complement component C6 95.5 0.0064 2.2E-07 67.7 3.6 37 11-50 118-154 (913)
178 1ri6_A Putative isomerase YBHE 95.3 0.079 2.7E-06 50.4 10.2 109 362-473 90-209 (343)
179 2kl7_A Fibulin-4; secreted, ca 95.3 0.011 3.7E-07 43.7 3.0 36 262-302 6-44 (71)
180 2iwa_A Glutamine cyclotransfer 95.2 0.17 5.8E-06 47.6 11.7 69 401-472 21-94 (266)
181 1ri6_A Putative isomerase YBHE 95.2 0.081 2.8E-06 50.3 9.8 109 362-472 135-261 (343)
182 1l0q_A Surface layer protein; 95.1 0.13 4.4E-06 50.3 11.3 109 362-476 38-150 (391)
183 3hfq_A Uncharacterized protein 95.0 0.1 3.6E-06 50.2 10.3 74 398-472 37-116 (347)
184 1pby_B Quinohemoprotein amine 95.0 0.2 6.9E-06 47.3 12.2 108 362-476 40-166 (337)
185 2iwa_A Glutamine cyclotransfer 94.9 0.074 2.5E-06 50.1 8.4 106 365-475 114-239 (266)
186 1l0q_A Surface layer protein; 94.8 0.16 5.5E-06 49.5 11.2 110 361-476 79-192 (391)
187 3nol_A Glutamine cyclotransfer 94.8 0.13 4.6E-06 48.1 9.7 105 365-472 134-255 (262)
188 1szb_A Mannose binding lectin- 94.7 0.0076 2.6E-07 52.8 0.9 32 184-215 137-168 (170)
189 3amr_A 3-phytase; beta-propell 94.6 0.11 3.8E-06 50.8 9.0 76 401-476 180-266 (355)
190 1nzi_A Complement C1S componen 94.4 0.015 5E-07 50.3 2.0 39 261-304 119-158 (159)
191 2kl7_A Fibulin-4; secreted, ca 94.3 0.041 1.4E-06 40.5 4.1 13 186-198 17-29 (71)
192 3scy_A Hypothetical bacterial 94.2 0.28 9.7E-06 47.4 11.2 73 402-474 156-243 (361)
193 3c75_H MADH, methylamine dehyd 94.1 0.13 4.5E-06 51.9 8.7 104 365-474 82-210 (426)
194 2wg3_C Hedgehog-interacting pr 93.8 0.089 3.1E-06 53.8 6.7 85 389-473 2-115 (463)
195 1jmx_B Amine dehydrogenase; ox 93.5 0.33 1.1E-05 46.2 10.0 103 368-473 11-134 (349)
196 3mbr_X Glutamine cyclotransfer 93.4 0.32 1.1E-05 45.0 9.2 105 366-473 113-235 (243)
197 1fwx_A Nitrous oxide reductase 93.4 0.16 5.5E-06 53.2 7.9 96 364-463 98-216 (595)
198 1pby_B Quinohemoprotein amine 93.3 0.8 2.7E-05 43.0 12.4 74 402-475 35-126 (337)
199 3q6k_A 43.2 kDa salivary prote 93.2 0.2 6.9E-06 49.6 8.0 63 402-465 276-346 (381)
200 3bws_A Protein LP49; two-domai 93.2 0.38 1.3E-05 47.6 10.3 106 362-473 309-432 (433)
201 2mad_H Methylamine dehydrogena 93.0 1 3.5E-05 44.3 13.0 103 365-474 30-157 (373)
202 3nok_A Glutaminyl cyclase; bet 92.8 0.14 4.7E-06 48.1 5.8 101 366-471 144-264 (268)
203 3sjl_D Methylamine dehydrogena 92.5 0.58 2E-05 46.5 10.3 109 361-475 38-171 (386)
204 1tpg_A T-plasminogen activator 92.5 0.089 3E-06 40.7 3.5 35 179-217 51-90 (91)
205 3f1s_B Vitamin K-dependent pro 92.5 0.057 2E-06 51.3 2.8 37 182-218 11-47 (283)
206 1nzi_A Complement C1S componen 92.2 0.041 1.4E-06 47.3 1.3 32 183-214 127-158 (159)
207 3amr_A 3-phytase; beta-propell 92.1 0.89 3.1E-05 44.4 10.7 74 398-472 125-209 (355)
208 3bws_A Protein LP49; two-domai 92.0 0.53 1.8E-05 46.4 9.5 108 362-475 218-336 (433)
209 1jof_A Carboxy-CIS,CIS-muconat 92.0 0.89 3E-05 44.1 11.0 74 399-472 143-223 (365)
210 2ojh_A Uncharacterized protein 91.7 0.52 1.8E-05 43.2 8.4 113 361-479 47-168 (297)
211 2ece_A 462AA long hypothetical 91.0 0.92 3.2E-05 45.8 9.8 60 401-460 321-399 (462)
212 2wg3_C Hedgehog-interacting pr 90.5 0.4 1.4E-05 48.9 6.9 62 399-461 137-242 (463)
213 3mbr_X Glutamine cyclotransfer 90.5 1.5 5.1E-05 40.4 10.1 75 401-479 21-101 (243)
214 2hqs_A Protein TOLB; TOLB, PAL 90.3 0.45 1.5E-05 47.4 7.0 113 361-480 272-394 (415)
215 1nir_A Nitrite reductase; hemo 90.2 0.94 3.2E-05 47.1 9.6 70 403-472 181-256 (543)
216 2ojh_A Uncharacterized protein 90.2 1.5 5.2E-05 39.9 10.2 98 377-479 23-125 (297)
217 2vj2_A Jagged-1; signalling, p 90.2 0.11 3.7E-06 45.3 1.9 18 272-294 145-163 (169)
218 1jof_A Carboxy-CIS,CIS-muconat 89.9 0.97 3.3E-05 43.9 8.9 74 402-475 255-343 (365)
219 4a9v_A PHOX; hydrolase, beta-p 89.4 1.2 4.1E-05 46.3 9.2 82 399-481 382-526 (592)
220 3sjl_D Methylamine dehydrogena 89.2 1.5 5.2E-05 43.4 9.6 68 405-473 284-363 (386)
221 1qks_A Cytochrome CD1 nitrite 89.1 1.6 5.4E-05 45.7 10.2 98 369-472 168-274 (567)
222 3nol_A Glutamine cyclotransfer 88.9 1.7 5.8E-05 40.5 9.2 72 404-479 46-123 (262)
223 2mad_H Methylamine dehydrogena 88.7 3.1 0.00011 40.8 11.6 73 402-475 265-352 (373)
224 2hqs_A Protein TOLB; TOLB, PAL 88.3 2 6.7E-05 42.7 10.0 113 360-478 183-305 (415)
225 3nok_A Glutaminyl cyclase; bet 88.3 1.9 6.6E-05 40.2 9.1 65 404-473 58-125 (268)
226 3no2_A Uncharacterized protein 88.2 2.2 7.5E-05 39.9 9.7 95 377-477 16-112 (276)
227 3c75_H MADH, methylamine dehyd 88.0 1.1 3.9E-05 45.0 7.9 72 406-479 324-409 (426)
228 1edm_B Factor IX; epidermal gr 88.0 0.37 1.3E-05 30.4 2.8 23 271-302 15-37 (39)
229 4a9v_A PHOX; hydrolase, beta-p 87.9 0.97 3.3E-05 47.0 7.3 61 399-460 474-549 (592)
230 2w86_A Fibrillin-1, fibrillin1 87.7 0.15 5E-06 43.3 1.0 30 184-213 117-147 (147)
231 1nir_A Nitrite reductase; hemo 87.5 2.4 8.3E-05 43.9 10.4 106 363-473 186-311 (543)
232 1mda_H Methylamine dehydrogena 86.2 1.9 6.5E-05 42.4 8.2 95 368-468 32-151 (368)
233 2ece_A 462AA long hypothetical 85.8 2.6 8.9E-05 42.6 9.0 93 377-472 229-351 (462)
234 3pe7_A Oligogalacturonate lyas 85.7 3 0.0001 40.1 9.5 73 362-438 42-119 (388)
235 1edm_B Factor IX; epidermal gr 85.3 0.24 8.1E-06 31.4 0.8 19 186-204 15-33 (39)
236 1qks_A Cytochrome CD1 nitrite 85.2 4.1 0.00014 42.5 10.6 107 362-474 203-374 (567)
237 3azo_A Aminopeptidase; POP fam 83.9 1.6 5.5E-05 45.9 7.0 115 361-480 135-281 (662)
238 1gl4_A Nidogen-1, entactin; im 83.3 0.092 3.2E-06 49.5 -2.7 40 258-304 4-45 (285)
239 3o4h_A Acylamino-acid-releasin 83.1 2.7 9.3E-05 43.5 8.2 112 362-482 116-235 (582)
240 2oiz_A Aromatic amine dehydrog 82.7 2.6 8.7E-05 41.0 7.4 101 367-473 15-140 (361)
241 1gl4_A Nidogen-1, entactin; im 82.3 0.18 6.1E-06 47.5 -1.2 30 186-217 19-48 (285)
242 1mda_H Methylamine dehydrogena 82.0 4.9 0.00017 39.4 9.1 72 402-475 262-348 (368)
243 2oiz_A Aromatic amine dehydrog 81.9 6.8 0.00023 37.9 10.2 66 405-474 258-335 (361)
244 1jmx_B Amine dehydrogenase; ox 81.6 6 0.0002 37.1 9.5 71 404-475 3-76 (349)
245 2ecf_A Dipeptidyl peptidase IV 81.1 4.4 0.00015 43.1 9.3 112 361-479 42-187 (741)
246 2k2s_B Micronemal protein 6; m 80.5 0.2 6.9E-06 35.5 -1.1 28 186-216 25-52 (61)
247 2ygq_A WIF-1, WNT inhibitory f 78.8 2.3 8E-05 41.0 5.4 17 284-304 292-308 (324)
248 2z3z_A Dipeptidyl aminopeptida 78.6 4.5 0.00015 42.8 8.2 113 361-478 263-396 (706)
249 3c5m_A Oligogalacturonate lyas 78.4 1.6 5.4E-05 42.1 4.2 72 362-438 42-119 (396)
250 3no2_A Uncharacterized protein 77.8 12 0.0004 34.7 10.0 95 377-479 100-202 (276)
251 1xfd_A DIP, dipeptidyl aminope 77.6 11 0.00037 39.8 10.9 115 361-481 22-151 (723)
252 2ecf_A Dipeptidyl peptidase IV 75.6 3.6 0.00012 43.8 6.4 95 361-460 114-227 (741)
253 1gxr_A ESG1, transducin-like e 75.1 17 0.00059 33.4 10.5 109 362-475 104-216 (337)
254 1k32_A Tricorn protease; prote 74.7 5.9 0.0002 44.4 8.1 96 377-477 359-465 (1045)
255 3azo_A Aminopeptidase; POP fam 74.1 7 0.00024 40.9 8.1 113 361-478 193-330 (662)
256 2gop_A Trilobed protease; beta 73.4 11 0.00036 35.5 8.6 73 377-460 44-122 (347)
257 2k2s_B Micronemal protein 6; m 73.2 0.69 2.4E-05 32.7 -0.0 18 272-294 26-43 (61)
258 3c5m_A Oligogalacturonate lyas 72.8 19 0.00064 34.3 10.3 78 403-481 38-119 (396)
259 3ow8_A WD repeat-containing pr 72.3 51 0.0018 30.6 13.2 107 362-473 171-279 (321)
260 3pe7_A Oligogalacturonate lyas 71.5 18 0.00063 34.4 9.9 74 406-480 41-118 (388)
261 1gxr_A ESG1, transducin-like e 71.3 36 0.0012 31.1 11.8 110 363-478 149-260 (337)
262 1a3p_A Epidermal growth factor 71.1 2.1 7.3E-05 27.9 2.0 24 186-213 15-40 (45)
263 3zwl_B Eukaryotic translation 70.9 41 0.0014 31.2 12.2 95 363-462 183-280 (369)
264 3dem_A Complement factor MAsp- 70.7 1.2 4.2E-05 41.7 1.1 32 267-303 132-163 (278)
265 1egf_A Epidermal growth factor 70.7 2.2 7.5E-05 29.0 2.1 24 186-213 18-43 (53)
266 1tl2_A L10, protein (tachylect 70.2 17 0.00059 32.9 8.4 73 395-471 35-114 (236)
267 3ow8_A WD repeat-containing pr 69.9 51 0.0017 30.7 12.5 82 398-480 162-244 (321)
268 3vl1_A 26S proteasome regulato 68.9 37 0.0013 32.5 11.6 95 377-476 120-215 (420)
269 1nt0_A MAsp2, mannose-binding 68.8 1.4 4.8E-05 41.6 1.0 32 267-303 131-162 (286)
270 3u7u_G Neuregulin 1; signaling 68.3 2.8 9.6E-05 28.8 2.2 17 283-303 32-48 (55)
271 2z3z_A Dipeptidyl aminopeptida 67.6 18 0.0006 38.1 9.5 107 362-475 316-437 (706)
272 1egf_A Epidermal growth factor 67.6 4.1 0.00014 27.6 2.9 24 272-304 19-44 (53)
273 3ca7_A Protein spitz; argos, E 66.8 0.78 2.7E-05 31.2 -0.9 17 283-303 31-47 (52)
274 4a5s_A Dipeptidyl peptidase 4 66.4 11 0.00037 40.4 7.6 112 361-479 324-455 (740)
275 4a5s_A Dipeptidyl peptidase 4 66.2 10 0.00035 40.6 7.3 77 403-481 321-408 (740)
276 2aq5_A Coronin-1A; WD40 repeat 64.7 65 0.0022 30.8 12.4 111 362-475 183-301 (402)
277 3iuj_A Prolyl endopeptidase; h 64.5 6.1 0.00021 42.1 5.1 110 364-480 288-412 (693)
278 3u7u_G Neuregulin 1; signaling 64.4 3.3 0.00011 28.5 1.9 27 178-204 10-43 (55)
279 1k32_A Tricorn protease; prote 63.3 18 0.00061 40.5 8.9 96 361-461 384-491 (1045)
280 3o4h_A Acylamino-acid-releasin 63.1 2.9 9.9E-05 43.2 2.2 103 362-471 156-274 (582)
281 1xfd_A DIP, dipeptidyl aminope 61.8 25 0.00086 36.9 9.4 116 361-480 119-296 (723)
282 2xyi_A Probable histone-bindin 61.6 23 0.00078 34.7 8.5 76 398-473 275-353 (430)
283 1fwx_A Nitrous oxide reductase 61.5 20 0.00069 37.4 8.1 72 401-473 277-361 (595)
284 4ery_A WD repeat-containing pr 61.1 96 0.0033 28.1 12.6 106 363-473 73-180 (312)
285 1yr2_A Prolyl oligopeptidase; 60.3 7.3 0.00025 41.8 4.8 108 365-478 325-446 (741)
286 4ery_A WD repeat-containing pr 60.2 1E+02 0.0034 28.0 13.2 84 389-474 55-139 (312)
287 3zwu_A Alkaline phosphatase PH 59.6 32 0.0011 35.8 9.3 60 399-459 382-492 (592)
288 2gop_A Trilobed protease; beta 59.3 21 0.00071 33.4 7.5 84 361-453 64-182 (347)
289 1g1s_A P-selectin; selectin, l 58.0 3.9 0.00013 34.7 1.7 29 271-308 131-160 (162)
290 4gqb_B Methylosome protein 50; 57.9 59 0.002 30.7 10.5 107 363-473 135-246 (344)
291 3iuj_A Prolyl endopeptidase; h 57.2 16 0.00055 38.8 6.8 69 408-479 287-365 (693)
292 2xyi_A Probable histone-bindin 57.1 47 0.0016 32.3 9.9 76 398-473 229-309 (430)
293 1g1s_A P-selectin; selectin, l 57.0 3.6 0.00012 34.8 1.3 28 186-217 131-158 (162)
294 4aez_A CDC20, WD repeat-contai 56.5 1.1E+02 0.0037 29.1 12.4 108 363-475 225-338 (401)
295 1k8k_C P40, ARP2/3 complex 41 56.3 81 0.0028 29.2 11.2 108 363-475 16-129 (372)
296 3mkq_A Coatomer beta'-subunit; 55.9 31 0.0011 36.6 9.0 110 362-475 62-174 (814)
297 1ob1_C Major merozoite surface 55.1 4.9 0.00017 31.2 1.6 64 186-293 16-82 (99)
298 2pm9_A Protein WEB1, protein t 54.7 56 0.0019 31.0 9.9 115 362-476 74-200 (416)
299 2ygq_A WIF-1, WNT inhibitory f 54.6 17 0.00059 34.8 5.9 11 194-204 292-302 (324)
300 2pm9_A Protein WEB1, protein t 54.0 34 0.0011 32.7 8.1 77 400-476 214-297 (416)
301 2xdw_A Prolyl endopeptidase; a 53.9 85 0.0029 33.0 11.9 71 403-475 235-322 (710)
302 1k8k_C P40, ARP2/3 complex 41 53.3 1.1E+02 0.0038 28.2 11.7 77 398-475 140-235 (372)
303 3zwl_B Eukaryotic translation 53.1 1.3E+02 0.0043 27.6 12.0 86 389-475 20-107 (369)
304 1nt0_A MAsp2, mannose-binding 51.2 4.1 0.00014 38.3 0.8 31 183-213 132-162 (286)
305 2xdw_A Prolyl endopeptidase; a 50.5 56 0.0019 34.5 9.7 108 361-473 130-268 (710)
306 1sq9_A Antiviral protein SKI8; 50.3 1.1E+02 0.0039 28.5 11.3 76 400-476 233-325 (397)
307 1yr2_A Prolyl oligopeptidase; 49.8 23 0.00079 37.8 6.6 111 361-479 273-401 (741)
308 1r5m_A SIR4-interacting protei 49.8 38 0.0013 32.2 7.7 92 377-473 311-425 (425)
309 3dem_A Complement factor MAsp- 49.7 4.7 0.00016 37.6 0.9 31 183-213 133-163 (278)
310 1hae_A Heregulin-alpha; growth 48.7 3 0.0001 29.3 -0.4 24 186-213 18-46 (63)
311 2ymu_A WD-40 repeat protein; u 48.1 1.2E+02 0.0042 30.3 11.6 96 377-479 408-504 (577)
312 3mkq_A Coatomer beta'-subunit; 48.0 82 0.0028 33.3 10.7 109 361-474 19-129 (814)
313 1r5m_A SIR4-interacting protei 47.8 90 0.0031 29.4 10.1 76 398-475 245-321 (425)
314 4aez_A CDC20, WD repeat-contai 47.5 1.9E+02 0.0065 27.4 12.7 78 398-475 215-295 (401)
315 1erj_A Transcriptional repress 47.4 1.4E+02 0.0048 28.3 11.5 106 362-472 130-237 (393)
316 1n1i_A Merozoite surface prote 47.0 9.7 0.00033 29.8 2.1 58 187-293 23-83 (105)
317 3ei3_B DNA damage-binding prot 46.9 70 0.0024 30.1 9.1 105 363-474 171-283 (383)
318 2ynn_A Coatomer subunit beta'; 46.9 81 0.0028 28.8 9.3 92 377-472 78-171 (304)
319 4fbr_A Lectin, myxobacterial h 44.9 1.3 4.4E-05 41.3 -3.7 20 186-205 44-63 (267)
320 2ymu_A WD-40 repeat protein; u 44.8 1.2E+02 0.004 30.4 10.9 95 377-478 449-544 (577)
321 4e54_B DNA damage-binding prot 44.2 73 0.0025 31.0 8.9 77 398-475 162-242 (435)
322 3jrp_A Fusion protein of prote 42.7 1.7E+02 0.0057 26.9 11.0 77 398-474 99-192 (379)
323 1vyh_C Platelet-activating fac 42.1 2.2E+02 0.0075 27.2 12.0 95 377-476 173-268 (410)
324 2vdu_B TRNA (guanine-N(7)-)-me 41.9 40 0.0014 33.0 6.6 74 400-475 195-273 (450)
325 1k36_A Epiregulin; EGF-like fo 41.5 7.2 0.00025 25.5 0.6 18 187-204 18-37 (46)
326 4e54_B DNA damage-binding prot 41.5 97 0.0033 30.0 9.3 81 401-481 120-204 (435)
327 2bkl_A Prolyl endopeptidase; m 41.3 1E+02 0.0035 32.2 10.1 109 361-475 173-306 (695)
328 3hxj_A Pyrrolo-quinoline quino 41.0 1.5E+02 0.005 27.0 10.1 99 368-476 188-287 (330)
329 4g56_B MGC81050 protein; prote 40.8 58 0.002 30.8 7.4 106 363-472 147-257 (357)
330 3ei3_B DNA damage-binding prot 40.5 2.2E+02 0.0076 26.4 11.6 83 397-479 70-156 (383)
331 2ynn_A Coatomer subunit beta'; 40.4 1.9E+02 0.0066 26.1 10.8 73 401-474 56-129 (304)
332 2vdu_B TRNA (guanine-N(7)-)-me 39.7 2.2E+02 0.0076 27.5 11.7 106 362-471 202-337 (450)
333 2gy5_A Angiopoietin-1 receptor 39.2 18 0.00062 36.1 3.4 22 186-213 209-230 (423)
334 1z68_A Fibroblast activation p 39.0 32 0.0011 36.2 5.6 108 361-478 21-144 (719)
335 1got_B GT-beta; complex (GTP-b 38.9 2.3E+02 0.008 26.0 11.8 100 377-481 207-309 (340)
336 1nql_B Epidermal growth factor 35.4 11 0.00037 25.5 0.7 17 283-303 27-43 (53)
337 1sq9_A Antiviral protein SKI8; 34.8 2.3E+02 0.008 26.3 10.7 75 399-473 290-395 (397)
338 1pgu_A Actin interacting prote 33.4 2.2E+02 0.0075 28.4 10.8 70 402-473 208-283 (615)
339 3k26_A Polycomb protein EED; W 33.3 1.6E+02 0.0053 27.0 9.0 92 377-473 96-192 (366)
340 3sfz_A APAF-1, apoptotic pepti 33.1 2.9E+02 0.0099 30.9 12.6 80 396-475 653-734 (1249)
341 1vyh_C Platelet-activating fac 32.8 3.3E+02 0.011 25.9 11.6 54 398-451 232-286 (410)
342 2pbi_B Guanine nucleotide-bind 32.8 2.9E+02 0.01 25.6 11.0 75 399-474 195-272 (354)
343 2bkl_A Prolyl endopeptidase; m 32.7 44 0.0015 35.2 5.3 97 377-479 296-403 (695)
344 3dwl_C Actin-related protein 2 32.6 85 0.0029 29.3 7.0 108 362-474 18-132 (377)
345 2aq5_A Coronin-1A; WD40 repeat 32.6 2.3E+02 0.0079 26.7 10.3 77 399-475 80-165 (402)
346 3fcs_B Integrin beta-3; beta p 31.5 1.6E+02 0.0053 31.3 9.2 19 285-307 584-604 (690)
347 3i2n_A WD repeat-containing pr 30.6 80 0.0027 29.0 6.4 92 377-473 191-291 (357)
348 3hxj_A Pyrrolo-quinoline quino 30.4 2.5E+02 0.0086 25.2 9.9 31 444-476 217-247 (330)
349 2xe4_A Oligopeptidase B; hydro 30.1 1.2E+02 0.004 32.4 8.2 107 361-473 226-354 (751)
350 4g56_B MGC81050 protein; prote 30.0 98 0.0034 29.2 7.0 106 362-472 233-342 (357)
351 3mmy_A MRNA export factor; mRN 29.9 2.4E+02 0.0081 25.6 9.7 80 396-476 35-120 (368)
352 3gre_A Serine/threonine-protei 29.6 2.5E+02 0.0086 26.6 10.1 97 377-476 193-295 (437)
353 4a11_B DNA excision repair pro 29.2 1.2E+02 0.0041 28.3 7.5 81 395-475 38-133 (408)
354 1erj_A Transcriptional repress 28.4 3.7E+02 0.012 25.3 11.0 69 403-472 126-195 (393)
355 4a11_B DNA excision repair pro 27.1 2.7E+02 0.0092 25.7 9.6 72 401-472 142-217 (408)
356 3vl1_A 26S proteasome regulato 26.2 2.4E+02 0.0083 26.5 9.2 74 401-474 248-323 (420)
357 1got_B GT-beta; complex (GTP-b 26.0 3.8E+02 0.013 24.5 12.1 77 396-473 180-257 (340)
358 3frx_A Guanine nucleotide-bind 25.5 3.8E+02 0.013 24.2 10.8 70 377-451 88-158 (319)
359 3jrp_A Fusion protein of prote 25.4 3.8E+02 0.013 24.3 10.7 77 398-474 145-241 (379)
360 3f3f_A Nucleoporin SEH1; struc 25.4 3.5E+02 0.012 23.9 10.7 79 396-474 7-91 (351)
361 2oit_A Nucleoporin 214KDA; NH2 24.9 2.7E+02 0.0093 27.1 9.4 78 400-478 149-228 (434)
362 1pgu_A Actin interacting prote 24.4 2.5E+02 0.0087 27.9 9.3 72 400-472 18-96 (615)
363 1yfq_A Cell cycle arrest prote 24.2 3.9E+02 0.013 23.9 11.2 77 399-476 192-285 (342)
364 3f3f_A Nucleoporin SEH1; struc 23.8 3.3E+02 0.011 24.1 9.4 75 398-473 55-143 (351)
365 3v7d_B Cell division control p 23.8 4.8E+02 0.016 24.8 11.8 94 377-477 291-385 (464)
366 2xe4_A Oligopeptidase B; hydro 23.8 1.6E+02 0.0054 31.4 7.8 65 410-474 124-211 (751)
367 3fm0_A Protein CIAO1; WDR39,SG 23.3 4.3E+02 0.015 24.2 11.3 77 397-474 58-137 (345)
368 2zuy_A YESX protein; beta-prop 22.2 3.4E+02 0.011 28.2 9.2 62 422-483 273-349 (620)
369 3dwl_C Actin-related protein 2 22.0 1.6E+02 0.0054 27.4 6.7 74 398-472 98-176 (377)
370 3k26_A Polycomb protein EED; W 21.5 4E+02 0.014 23.9 9.5 78 401-478 70-152 (366)
371 2gy5_A Angiopoietin-1 receptor 21.2 60 0.0021 32.2 3.5 15 187-204 300-314 (423)
372 3dw8_B Serine/threonine-protei 21.2 3.8E+02 0.013 25.2 9.5 115 363-483 185-326 (447)
373 1yfq_A Cell cycle arrest prote 20.3 3.8E+02 0.013 23.9 9.0 77 399-477 10-93 (342)
374 2zux_A YESW protein; beta-prop 20.3 3.3E+02 0.011 28.0 8.7 62 422-483 269-345 (591)
375 3b7f_A Glycosyl hydrolase, BNR 20.1 3.3E+02 0.011 25.8 8.7 76 404-481 281-380 (394)
No 1
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=100.00 E-value=1.2e-62 Score=539.73 Aligned_cols=402 Identities=28% Similarity=0.559 Sum_probs=186.7
Q ss_pred CCCCCCcEEecCCCCceecCCcccCCcCCCCCCCcCCCCCCCCCCCCCCCCeecCCCCceecCcceeCCCCCCCCCCccc
Q psy4900 10 RKCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCPATTGLSCDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDEE 89 (485)
Q Consensus 10 ~~C~~~~f~C~c~~g~ci~~~~~Cd~~~dC~d~sdE~~C~~~~~~~C~~~~f~C~~g~~Ci~~~~~Cd~~~dC~d~sDe~ 89 (485)
..|.+++|+| .+|.||+..|+|||+.||.|++||.+|.. ..|.+.+|+|.+|. ||+..|+|||..||.|+|||.
T Consensus 104 ~~C~~~~f~C--~~g~Ci~~~~~CDg~~dC~dgsDE~~C~~---~~C~~~~f~C~~~~-Ci~~~~~Cdg~~dC~dgsDE~ 177 (791)
T 3m0c_C 104 KTCSQDEFRC--HDGKCISRQFVCDSDRDCLDGSDEASCPV---LTCGPASFQCNSST-CIPQLWACDNDPDCEDGSDEW 177 (791)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCeEEC--CCCCEECHHHcCCCcccCCCCcccccccc---cccccceeccCCCc-cccccccCCCCCcCCCCCCcc
Confidence 3688899999 88999999999999999999999999986 68999999999997 999999999999999999996
Q ss_pred --CCC--------CCccCCCcccCCCCcccCccccCCCCCCCCCCCCCCCCCCCCcCCCceecCCCCCCCCCcccCCCcc
Q psy4900 90 --KCN--------FTACHVGQFKCANSLCIPVSYHCDGYRDCIDGSDETNCTSIACPNNKFLCPMGAAGGKPKCIPKAQV 159 (485)
Q Consensus 90 --~C~--------~~~C~~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDe~~C~~~~c~~~~~~C~~g~~~~~~~Ci~~~~~ 159 (485)
+|. ...|.+.+|+|.++.||+..|+|||..||.|++||.+|....|...+|+|.++ .||+..|+
T Consensus 178 ~~~C~~~~~~~~~~~~C~~~~f~C~~g~Ci~~~~~CDg~~dC~dgsDE~~C~~~~C~~~~f~C~~g------~Ci~~~~~ 251 (791)
T 3m0c_C 178 PQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDG------NCIHGSRQ 251 (791)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCCccccCCCCCCCCCCcccccCCceeccccccCCCCCCCCCCCCCCccccccCCCcceecCC------ceEeccee
Confidence 673 35699999999999999999999999999999999999877787778999887 88888888
Q ss_pred cCCCCCCCCCccccCc-----c-------------------------------------c--CCCC--CCccccccCCCC
Q psy4900 160 CDGRKDCEDNADEETV-----C-------------------------------------C--DCSL--LNCEFTCQASPT 193 (485)
Q Consensus 160 Cdg~~dC~d~sDe~~~-----C-------------------------------------~--~C~~--~~C~~~C~n~~~ 193 (485)
|||..||.|++||.+. | . +|.. ..|.+.|.++++
T Consensus 252 Cdg~~dC~dgsDE~~C~~~~~C~~~~~~~C~~G~Ci~~~~~Cd~~~dC~dgsDe~~~~C~~~~C~~~~~~C~~~C~~~~~ 331 (791)
T 3m0c_C 252 CDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKI 331 (791)
T ss_dssp ---------------------CCSTTCCCCTTSCCCCSSCCSCSSCCSSSSCSCCCTTBSCCSTTTGGGGCSSEEEECSB
T ss_pred cCChhccccccccCcccccccccCCCccccCCCcccccccccCCccccccccCccccccccccccccccCccccccCCCC
Confidence 8888888888887431 1 0 1211 134567889999
Q ss_pred CCeeeCCCCceeeCCCCCCCCcchhhhccccccccccccceeheeheeeeeeecccCCCCCCCCCCCCCCCCCCCccccc
Q psy4900 194 GGVCQCPEGQKVANDSRTCLLYMKNNLKQAVRSSTVSSHVKLVLLEVYVNVLKVRKLPTTAEPQSPNPCGSNNGGCEHMC 273 (485)
Q Consensus 194 ~~~C~C~~G~~l~~~~~~C~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~C~~~~g~C~~~C 273 (485)
+|.|.|++||.+ .+++.|.|++| |. ..+.|+|.|
T Consensus 332 ~y~C~C~~Gy~l-~~g~~C~dide--------------------------------------------C~-~~~~C~~~C 365 (791)
T 3m0c_C 332 GYECLCPDGFQL-VAQRRCEDIDE--------------------------------------------CQ-DPDTCSQLC 365 (791)
T ss_dssp SEEEECCTTCEE-ETTTEEECCCC--------------------------------------------CS-SSSSCTTTC
T ss_pred CcccCCCCCCcc-CCCCccccCcc--------------------------------------------cC-CCCCCCCee
Confidence 999999999988 67888999888 87 567899999
Q ss_pred cccccCCCCCCccccCCCCccccCCCCCCCCCCCCCceEEcCCCCcccCceeecCCCCCCCCCcCCCCC--Cc-------
Q psy4900 274 IITRASGNALGYKCACDIGYRLSVNGNNCNQPTCAPGEFQCASGRCVPSTFKCDAENDCGDYSDETGCV--NV------- 344 (485)
Q Consensus 274 ~n~~~~~~~g~~~C~C~~Gy~l~~d~~~C~~~~C~~~~~~c~~g~ci~~~~~cd~~~dc~d~sde~~c~--~~------- 344 (485)
+|++ |+|+|.|+.||.|..++++|++..-.+.+++. ....+++.+....-........-. .+
T Consensus 366 ~n~~-----gsy~C~C~~Gy~l~~~~~~C~~~~~~p~Ll~a----n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~ 436 (791)
T 3m0c_C 366 VNLE-----GGYKCQCEEGFQLDPHTKACKAVGSIAYLFFT----NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASN 436 (791)
T ss_dssp CBCS-----SCBCCCCCSSEECCSSCCCCEETTSCCEEEEE----CBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTT
T ss_pred ecCC-----CCceeecCCCCEeCCCCceeeecccccccccc----cccceeEeeccCCcceeeecCCCceEEEeecccCC
Confidence 9999 99999999999999999999874333455555 334455555543211111110000 00
Q ss_pred ---------cccCCcccCCC-----C-ceec-ccccc-------CCCCccCCCCC--CccccccCcccccceEEEEecCC
Q psy4900 345 ---------TCSLSQFACEN-----G-RCVP-STWKC-------DSENDCGDGSD--EGDFCSEKTCAYFQFHAIVLGSN 399 (485)
Q Consensus 345 ---------~~~~~~~~~~~-----~-~~i~-~~~~~-------~~~~~y~~d~~--~I~~~~~~~c~~g~~~~~l~~~~ 399 (485)
..++...+.+. . .++. ++..| .+++|||+|.. +|.+++++ |+.+++|+...
T Consensus 437 ~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld----G~~~~~l~~~~ 512 (791)
T 3m0c_C 437 RIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK----GVKRKTLFREN 512 (791)
T ss_dssp EEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT----SSSEEEEEECT
T ss_pred eeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC----CCeEEEEEeCC
Confidence 01122222221 0 1222 22223 34799999987 89999999 99999999889
Q ss_pred CCCCccEEecCCCCeEEEeC---CCcEEEEEcCCCCcEEEEeCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEccCCCe
Q psy4900 400 LTNPTDLALDPTSGLMFVAD---SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEGKNR 476 (485)
Q Consensus 400 ~~~p~~iavD~~~~~lywtd---~~~I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG~~r 476 (485)
+..|++|||||..|+||||| .++|+|++|||+.+++|+...+.+|+|||||+..++|||+|++.++|++++++|+.|
T Consensus 513 l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~ 592 (791)
T 3m0c_C 513 GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR 592 (791)
T ss_dssp TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce
Confidence 99999999999999999999 378999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecC
Q psy4900 477 FLILRG 482 (485)
Q Consensus 477 ~~~~~~ 482 (485)
++|+.+
T Consensus 593 ~~v~~~ 598 (791)
T 3m0c_C 593 KTILED 598 (791)
T ss_dssp EEEEEC
T ss_pred EEEecC
Confidence 999864
No 2
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=100.00 E-value=2.6e-60 Score=518.58 Aligned_cols=401 Identities=28% Similarity=0.572 Sum_probs=322.6
Q ss_pred CCCCCCcEEecCCCCceecCCcccCCcCCCCCCCcCCCCCCCCCCCCCCCCeecCCCCceecCcceeCCCCCCCCCCcc-
Q psy4900 10 RKCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCPATTGLSCDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDE- 88 (485)
Q Consensus 10 ~~C~~~~f~C~c~~g~ci~~~~~Cd~~~dC~d~sdE~~C~~~~~~~C~~~~f~C~~g~~Ci~~~~~Cd~~~dC~d~sDe- 88 (485)
..|.+++|+| .+|.||+..|+|||..||.|||||.+|.. ..|.+.+|+|.+|. ||+..|+|||+.||.|+|||
T Consensus 86 ~~C~~~~f~C--~~g~Ci~~~~~Cdg~~dC~dgsDE~~C~~---~~C~~~~f~C~~~~-Ci~~~~~Cdg~~dC~dgsDE~ 159 (699)
T 1n7d_A 86 KTCSQDEFRC--HDGKCISRQFVCDSDRDCLDGSDEASCPV---LTCGPASFQCNSST-CIPQLWACDNDPDCEDGSDEW 159 (699)
T ss_dssp CCCCSSCCCS--SCC----CCCTTCSSCCSSSSCSSSSCCC---CCCCSSCCCCSSSC-CCCTTSTTCSSCCSSSSSSSS
T ss_pred cccccCcEEc--CCCCEecHHHcCCCcCcCCCCCccCCcCc---cccCccccCCCCCc-ccchhcccCCCCcCCCCcccc
Confidence 4688999999 89999999999999999999999999986 68999999999987 99999999999999999999
Q ss_pred -cCCCC--------CccCCCcccCCCCcccCccccCCCCCCCCCCCCCCCCCCCCcCCCceecCCCCCCCCCcccCCCcc
Q psy4900 89 -EKCNF--------TACHVGQFKCANSLCIPVSYHCDGYRDCIDGSDETNCTSIACPNNKFLCPMGAAGGKPKCIPKAQV 159 (485)
Q Consensus 89 -~~C~~--------~~C~~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDe~~C~~~~c~~~~~~C~~g~~~~~~~Ci~~~~~ 159 (485)
.+|.. ..|.+++|+|.+|.||+.+|+|||..||.||+||.+|....|...+|+|.++ .||+.+|+
T Consensus 160 ~~~C~~~~~~~~~~~~C~~~~f~C~~g~Ci~~~~~CDg~~dC~dgsDE~~C~~~~C~~~~f~C~~g------~Ci~~~~~ 233 (699)
T 1n7d_A 160 PQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDG------NCIHGSRQ 233 (699)
T ss_dssp CSSSSCCCCCSSCCCCSCSSSCCCSSSCCCSTTCTTSSSCCSTTSCSSCSCCCCCCCSSEEESSSS------CEEETTCC
T ss_pred cccCCCcccccCCCCCCCCcceecCCCceEechhccCCCCCCCCCcccccCCCcccCCCcEecCCC------ceeeeecc
Confidence 88953 4799999999999999999999999999999999999877888889999988 99999999
Q ss_pred cCCCCCCCCCccccCc-----cc-----C----------------------------------CCC--CCccccccCCCC
Q psy4900 160 CDGRKDCEDNADEETV-----CC-----D----------------------------------CSL--LNCEFTCQASPT 193 (485)
Q Consensus 160 Cdg~~dC~d~sDe~~~-----C~-----~----------------------------------C~~--~~C~~~C~n~~~ 193 (485)
|||..||.|++||.+. |. . |.. ..|.+.|.|+++
T Consensus 234 Cdg~~dC~dgsde~~C~~~~~C~~~~~~~C~~g~Ci~~~~~Cd~~~dC~dgsDe~~~~C~~~eC~~~~~~C~~~C~~~~~ 313 (699)
T 1n7d_A 234 CDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKI 313 (699)
T ss_dssp SSSCCCSSSSCSSSSTTCCCCCCSTTCCCCTTSCCCCSSCCSCSSCCSSSSCSCCCSSCCCCCTTSSTTTSCTTCCCCTT
T ss_pred cCCCCCCCCCCccCCCCCCCcccCCCceecCCCcEeCCcccccccceecCcccccccccccccccccccCcCCCcccCCC
Confidence 9999999999998641 20 1 111 135568889999
Q ss_pred CCeeeCCCCceeeCCCCCCCCcchhhhccccccccccccceeheeheeeeeeecccCCCCCCCCCCCCCCCCCCCccccc
Q psy4900 194 GGVCQCPEGQKVANDSRTCLLYMKNNLKQAVRSSTVSSHVKLVLLEVYVNVLKVRKLPTTAEPQSPNPCGSNNGGCEHMC 273 (485)
Q Consensus 194 ~~~C~C~~G~~l~~~~~~C~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~C~~~~g~C~~~C 273 (485)
+|+|.|++||.+ .+++.|.|++| |. ..+.|+|.|
T Consensus 314 ~~~C~C~~G~~~-~~~~~C~dide--------------------------------------------C~-~~~~C~~~C 347 (699)
T 1n7d_A 314 GYECLCPDGFQL-VAQRRCEDIDE--------------------------------------------CQ-DPDTCSQLC 347 (699)
T ss_dssp CCCCCCCSSSCC-CSSSCCCCCCC--------------------------------------------CS-SSSSCTTTC
T ss_pred CcEEeCCCCeEc-CCCCcccCccc--------------------------------------------cC-CCCcccccc
Confidence 999999999988 77889999888 86 467899999
Q ss_pred cccccCCCCCCccccCCCCccccCCCCCCCCCCCCCceEEcCCCCcccCceeecCCCCCCCCCcCC--CCCCc-------
Q psy4900 274 IITRASGNALGYKCACDIGYRLSVNGNNCNQPTCAPGEFQCASGRCVPSTFKCDAENDCGDYSDET--GCVNV------- 344 (485)
Q Consensus 274 ~n~~~~~~~g~~~C~C~~Gy~l~~d~~~C~~~~C~~~~~~c~~g~ci~~~~~cd~~~dc~d~sde~--~c~~~------- 344 (485)
+|++ |+|+|.|++||.|..++++|++..-.+.+++. ....+++.+....-....... .-..+
T Consensus 348 ~n~~-----g~y~C~C~~G~~~~~~~~~C~~~~~~~~ll~~----~~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~ 418 (699)
T 1n7d_A 348 VNLE-----GGYKCQCEEGFQLDPHTKACKAVGSIAYLFFT----NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASN 418 (699)
T ss_dssp CBCS-----SCBCCCCCSSCBCCSSCCCCBCCSSCCCBCCC----CTTC-CEECTTSCCEECCSCCCTTCCCCEEETTTT
T ss_pred ccCC-----CCeeeeeecccccCCCCCcccccccceeEEec----CccceEEEeCCCCcceeeeccCcceEEEccccccC
Confidence 9999 99999999999999999999875333444444 223445555543211111100 00000
Q ss_pred ---------cccCCcccCC----CCc--eec-ccccc-------CCCCccCCCCC--CccccccCcccccceEEEEecCC
Q psy4900 345 ---------TCSLSQFACE----NGR--CVP-STWKC-------DSENDCGDGSD--EGDFCSEKTCAYFQFHAIVLGSN 399 (485)
Q Consensus 345 ---------~~~~~~~~~~----~~~--~i~-~~~~~-------~~~~~y~~d~~--~I~~~~~~~c~~g~~~~~l~~~~ 399 (485)
..++...+.+ ... .+. ++..| .+++|||++.. +|.+++++ |....+++...
T Consensus 419 ~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~d----g~~~~~l~~~~ 494 (699)
T 1n7d_A 419 RIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK----GVKRKTLFREQ 494 (699)
T ss_dssp EEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSS----SCCEEEECCCS
T ss_pred eEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecC----CCceEEEEeCC
Confidence 0111112222 111 121 11122 45899999876 89999999 99999998888
Q ss_pred CCCCccEEecCCCCeEEEeC---CCcEEEEEcCCCCcEEEEeCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEccCCCe
Q psy4900 400 LTNPTDLALDPTSGLMFVAD---SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEGKNR 476 (485)
Q Consensus 400 ~~~p~~iavD~~~~~lywtd---~~~I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG~~r 476 (485)
+..|++|||||..|+|||+| .++|+|++|+|+.+++|+...+.+|+|||||+..++|||+|+..++|++++++|+.|
T Consensus 495 ~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~ 574 (699)
T 1n7d_A 495 GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR 574 (699)
T ss_dssp SCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC
T ss_pred CCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce
Confidence 99999999999999999999 379999999999999998888999999999999999999999999999999999999
Q ss_pred EEEec
Q psy4900 477 FLILR 481 (485)
Q Consensus 477 ~~~~~ 481 (485)
++|+.
T Consensus 575 ~~~~~ 579 (699)
T 1n7d_A 575 KTILE 579 (699)
T ss_dssp EEECC
T ss_pred EEEEe
Confidence 99875
No 3
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=100.00 E-value=6.5e-59 Score=510.15 Aligned_cols=444 Identities=24% Similarity=0.497 Sum_probs=161.3
Q ss_pred CCCCCCCcEEecCCCCceecCCcccCCcCCCCCCCcCCC--CCCCCCCCCCCCCeecCC--CCceecCcceeCCCCCCCC
Q psy4900 9 FRKCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEG--CPATTGLSCDLDQFRCAN--GQKCIDAKLKCNYHNDCGD 84 (485)
Q Consensus 9 ~~~C~~~~f~C~c~~g~ci~~~~~Cd~~~dC~d~sdE~~--C~~~~~~~C~~~~f~C~~--g~~Ci~~~~~Cd~~~dC~d 84 (485)
..+|.+++|+| .+|.||+..|+|||.+||.|+|||.+ |.. ..|.+.+|+|.+ +. ||+..|+|||+.||.|
T Consensus 21 ~~~C~~~~f~C--~~g~Ci~~~~~CDg~~dC~D~sDE~~~~C~~---~~C~~~~f~C~~~~~~-Ci~~~~~CDg~~dC~d 94 (791)
T 3m0c_C 21 GDRCERNEFQC--QDGKCISYKWVCDGSAECQDGSDESQETCLS---VTCKSGDFSCGGRVNR-CIPQFWRCDGQVDCDN 94 (791)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCcCcCccCC--CCCCEEehhhcCCCCccCCCCCccccccccc---CccCcCccccCCCCCC-EeeccccCCCCcCcCC
Confidence 56899999999 89999999999999999999999987 875 689999999997 55 9999999999999999
Q ss_pred CCcccCCCCCccCCCcccCCCCcccCccccCCCCCCCCCCCCCCCCCCCCcCCCceecCCCCCCCCCcccCCCcccCCCC
Q psy4900 85 NSDEEKCNFTACHVGQFKCANSLCIPVSYHCDGYRDCIDGSDETNCTSIACPNNKFLCPMGAAGGKPKCIPKAQVCDGRK 164 (485)
Q Consensus 85 ~sDe~~C~~~~C~~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDe~~C~~~~c~~~~~~C~~g~~~~~~~Ci~~~~~Cdg~~ 164 (485)
+|||.+|....|.+++|+|.+++||+..|+|||+.||.||+||.+|....|+..+|+|.++ .||+..|+|||..
T Consensus 95 gsDE~~C~~~~C~~~~f~C~~g~Ci~~~~~CDg~~dC~dgsDE~~C~~~~C~~~~f~C~~~------~Ci~~~~~Cdg~~ 168 (791)
T 3m0c_C 95 GSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSS------TCIPQLWACDNDP 168 (791)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcccCCccCccccCCeEECCCCCEECHHHcCCCcccCCCCcccccccccccccceeccCCC------ccccccccCCCCC
Confidence 9999999888899999999999999999999999999999999999887888889999998 9999999999999
Q ss_pred CCCCCccccC-ccc--CC---CCCCc---cccccCCCCCCeeeCCCCceeeCCCCCCCCcchhhhc--------------
Q psy4900 165 DCEDNADEET-VCC--DC---SLLNC---EFTCQASPTGGVCQCPEGQKVANDSRTCLLYMKNNLK-------------- 221 (485)
Q Consensus 165 dC~d~sDe~~-~C~--~C---~~~~C---~~~C~n~~~~~~C~C~~G~~l~~~~~~C~d~~e~~~~-------------- 221 (485)
||.|++||.. .|. .. ....| +|+|.+ +.|+ +...++++..+|.|.+++..+
T Consensus 169 dC~dgsDE~~~~C~~~~~~~~~~~~C~~~~f~C~~----g~Ci--~~~~~CDg~~dC~dgsDE~~C~~~~C~~~~f~C~~ 242 (791)
T 3m0c_C 169 DCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLS----GECI--HSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSD 242 (791)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCCCcccccCCCccccCCCCCCCCCCcccccC----Ccee--ccccccCCCCCCCCCCCCCCccccccCCCcceecC
Confidence 9999999962 131 00 01112 344432 2222 222233444445444443322
Q ss_pred -------------------------cccc-----cccccccceeheeheeeeeeecccCCCCCCCC---CCCCCCCCCCC
Q psy4900 222 -------------------------QAVR-----SSTVSSHVKLVLLEVYVNVLKVRKLPTTAEPQ---SPNPCGSNNGG 268 (485)
Q Consensus 222 -------------------------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~---~~~~C~~~~g~ 268 (485)
.... ......+..++.....-+ ....+.++++|+. ..++|....+.
T Consensus 243 g~Ci~~~~~Cdg~~dC~dgsDE~~C~~~~~C~~~~~~~C~~G~Ci~~~~~Cd-~~~dC~dgsDe~~~~C~~~~C~~~~~~ 321 (791)
T 3m0c_C 243 GNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCN-MARDCRDWSDEPIKECGTNECLDNNGG 321 (791)
T ss_dssp ------------------------------CCSTTCCCCTTSCCCCSSCCSC-SSCCSSSSCSCCCTTBSCCSTTTGGGG
T ss_pred CceEecceecCChhccccccccCcccccccccCCCccccCCCcccccccccC-CccccccccCccccccccccccccccC
Confidence 1100 000000111000000000 0112334455543 24567755678
Q ss_pred ccccccccccCCCCCCccccCCCCccccCCCCCCCC-CCCCCceEEcCC-CCcccCceeecCCCCCCCCCcCCCCCCcc-
Q psy4900 269 CEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQ-PTCAPGEFQCAS-GRCVPSTFKCDAENDCGDYSDETGCVNVT- 345 (485)
Q Consensus 269 C~~~C~n~~~~~~~g~~~C~C~~Gy~l~~d~~~C~~-~~C~~~~~~c~~-g~ci~~~~~cd~~~dc~d~sde~~c~~~~- 345 (485)
|+|.|++++ ++|+|.|++||+| .++++|.+ ++|.. .-.|.. -.+.+++|+|.....-.-..+...|..+.
T Consensus 322 C~~~C~~~~-----~~y~C~C~~Gy~l-~~g~~C~dideC~~-~~~C~~~C~n~~gsy~C~C~~Gy~l~~~~~~C~~~~~ 394 (791)
T 3m0c_C 322 CSHVCNDLK-----IGYECLCPDGFQL-VAQRRCEDIDECQD-PDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGS 394 (791)
T ss_dssp CSSEEEECS-----BSEEEECCTTCEE-ETTTEEECCCCCSS-SSSCTTTCCBCSSCBCCCCCSSEECCSSCCCCEETTS
T ss_pred ccccccCCC-----CCcccCCCCCCcc-CCCCccccCcccCC-CCCCCCeeecCCCCceeecCCCCEeCCCCceeeeccc
Confidence 999999999 9999999999998 67899987 78862 123421 12445677775443222222333343211
Q ss_pred ----------ccCCcccCCCCc--eec-------cccccCCCCccCCCCC--CccccccCcccccc----eEEEEecCCC
Q psy4900 346 ----------CSLSQFACENGR--CVP-------STWKCDSENDCGDGSD--EGDFCSEKTCAYFQ----FHAIVLGSNL 400 (485)
Q Consensus 346 ----------~~~~~~~~~~~~--~i~-------~~~~~~~~~~y~~d~~--~I~~~~~~~c~~g~----~~~~l~~~~~ 400 (485)
.+....+.+... .++ ..+....++|||+|.. +|.+++++ |. ...+++...+
T Consensus 395 ~p~Ll~an~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~----g~~~~~~~~~vi~~~l 470 (791)
T 3m0c_C 395 IAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLD----RAHGVSSYDTVISRDI 470 (791)
T ss_dssp CCEEEEECBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC------------CEEEECSSC
T ss_pred ccccccccccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEecc----CCCCCcceeEEEecCC
Confidence 011111221111 111 2233445889999886 78888888 74 4567777789
Q ss_pred CCCccEEecCCCCeEEEeC--CCcEEEEEcCCCCcEEEEeCCCcccceEEEeCCCCeEEEEeCCC-CcEEEEEccCCCeE
Q psy4900 401 TNPTDLALDPTSGLMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLL-DYIETVDYEGKNRF 477 (485)
Q Consensus 401 ~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~~lYW~D~~~-~~I~~~~~dG~~r~ 477 (485)
..|.||||||..++|||+| .++|++++++|+.+++|+...+..|.|||||+..++|||+|++. ++|++++++|+.|+
T Consensus 471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~ 550 (791)
T 3m0c_C 471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 550 (791)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred CCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE
Confidence 9999999999999999999 78999999999999999999999999999999999999999987 89999999999999
Q ss_pred EEecC
Q psy4900 478 LILRG 482 (485)
Q Consensus 478 ~~~~~ 482 (485)
+|+..
T Consensus 551 ~lv~~ 555 (791)
T 3m0c_C 551 SLVTE 555 (791)
T ss_dssp EEECS
T ss_pred EEEeC
Confidence 98864
No 4
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=100.00 E-value=1.2e-56 Score=489.55 Aligned_cols=442 Identities=27% Similarity=0.541 Sum_probs=325.3
Q ss_pred CCCCCCcEEecCCCCceecCCcccCCcCCCCCCCcCCCCCCCCCCCCCCCCeecCCCCceecCcceeCCCCCCCCCCccc
Q psy4900 10 RKCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCPATTGLSCDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDEE 89 (485)
Q Consensus 10 ~~C~~~~f~C~c~~g~ci~~~~~Cd~~~dC~d~sdE~~C~~~~~~~C~~~~f~C~~g~~Ci~~~~~Cd~~~dC~d~sDe~ 89 (485)
.+|.+++|+|.-..++||+..|+|||..||.|||||.+|+. ..|.+++|+|.+|. ||+..|+|||..||.|+|||.
T Consensus 45 ~~C~~~~f~C~~~~~~Ci~~~~~Cdg~~dC~dgsDE~~C~~---~~C~~~~f~C~~g~-Ci~~~~~Cdg~~dC~dgsDE~ 120 (699)
T 1n7d_A 45 VTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPP---KTCSQDEFRCHDGK-CISRQFVCDSDRDCLDGSDEA 120 (699)
T ss_dssp CSCSSSSCCCCC--CCCCCSSSTTSSSCCC-CCCTTTSCSS---CCCCSSCCCSSCC-----CCCTTCSSCCSSSSCSSS
T ss_pred cCCCCCccCCCCCCCceeCcceecCCcccCCCCcccCcccc---cccccCcEEcCCCC-EecHHHcCCCcCcCCCCCccC
Confidence 46889999994223589999999999999999999999986 67999999999987 999999999999999999999
Q ss_pred CCCCCccCCCcccCCCCcccCccccCCCCCCCCCCCCC--CCCCC--------CCcCCCceecCCCCCCCCCcccCCCcc
Q psy4900 90 KCNFTACHVGQFKCANSLCIPVSYHCDGYRDCIDGSDE--TNCTS--------IACPNNKFLCPMGAAGGKPKCIPKAQV 159 (485)
Q Consensus 90 ~C~~~~C~~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDe--~~C~~--------~~c~~~~~~C~~g~~~~~~~Ci~~~~~ 159 (485)
+|....|.+.+|+|.+++||+..|+|||+.||.||||| .+|.. ..|+..+|+|.+| .||+.+|+
T Consensus 121 ~C~~~~C~~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDE~~~~C~~~~~~~~~~~~C~~~~f~C~~g------~Ci~~~~~ 194 (699)
T 1n7d_A 121 SCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSG------ECIHSSWR 194 (699)
T ss_dssp SCCCCCCCSSCCCCSSSCCCCTTSTTCSSCCSSSSSSSSCSSSSCCCCCSSCCCCSCSSSCCCSSS------CCCSTTCT
T ss_pred CcCccccCccccCCCCCcccchhcccCCCCcCCCCcccccccCCCcccccCCCCCCCCcceecCCC------ceEechhc
Confidence 99988999999999999999999999999999999999 88953 3688889999998 99999999
Q ss_pred cCCCCCCCCCccccCccc--CCCCCCccccccCCCCCCeeeCCCCceeeCCCCCCCCcchhhhccccc-----ccccccc
Q psy4900 160 CDGRKDCEDNADEETVCC--DCSLLNCEFTCQASPTGGVCQCPEGQKVANDSRTCLLYMKNNLKQAVR-----SSTVSSH 232 (485)
Q Consensus 160 Cdg~~dC~d~sDe~~~C~--~C~~~~C~~~C~n~~~~~~C~C~~G~~l~~~~~~C~d~~e~~~~~~~~-----~~~~~~~ 232 (485)
|||..||.|++||.+ |. +|... +|+|.+ +.|+ ++..++++..+|.|.++|..+.... ......+
T Consensus 195 CDg~~dC~dgsDE~~-C~~~~C~~~--~f~C~~----g~Ci--~~~~~Cdg~~dC~dgsde~~C~~~~~C~~~~~~~C~~ 265 (699)
T 1n7d_A 195 CDGGPDCKDKSDEEN-CAVATCRPD--EFQCSD----GNCI--HGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHS 265 (699)
T ss_dssp TSSSCCSTTSCSSCS-CCCCCCCSS--EEESSS----SCEE--ETTCCSSSCCCSSSSCSSSSTTCCCCCCSTTCCCCTT
T ss_pred cCCCCCCCCCccccc-CCCcccCCC--cEecCC----Ccee--eeecccCCCCCCCCCCccCCCCCCCcccCCCceecCC
Confidence 999999999999987 43 34332 678864 3454 3344557777888888776553211 0111222
Q ss_pred ceeheeheeeeeeecccCCCCCCCC---CCCCCCCCCCCccccccccccCCCCCCccccCCCCccccCCCCCCCC-CCCC
Q psy4900 233 VKLVLLEVYVNVLKVRKLPTTAEPQ---SPNPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQ-PTCA 308 (485)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~e~~---~~~~C~~~~g~C~~~C~n~~~~~~~g~~~C~C~~Gy~l~~d~~~C~~-~~C~ 308 (485)
..++.....-+ ......++++|+. ..++|...++.|++.|++++ ++|+|.|++||+| .++++|++ ++|.
T Consensus 266 g~Ci~~~~~Cd-~~~dC~dgsDe~~~~C~~~eC~~~~~~C~~~C~~~~-----~~~~C~C~~G~~~-~~~~~C~dideC~ 338 (699)
T 1n7d_A 266 GECITLDKVCN-MARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLK-----IGYECLCPDGFQL-VAQRRCEDIDECQ 338 (699)
T ss_dssp SCCCCSSCCSC-SSCCSSSSCSCCCSSCCCCCTTSSTTTSCTTCCCCT-----TCCCCCCCSSSCC-CSSSCCCCCCCCS
T ss_pred CcEeCCccccc-ccceecCcccccccccccccccccccCcCCCcccCC-----CCcEEeCCCCeEc-CCCCcccCccccC
Confidence 22211111000 1223344555553 35678766778999999999 9999999999998 67899988 7886
Q ss_pred CceEEcCC-CCcccCceeecCCCCCCCCCcCCCCCCcc-----------ccCCcccCCCCc--ee-------ccccccCC
Q psy4900 309 PGEFQCAS-GRCVPSTFKCDAENDCGDYSDETGCVNVT-----------CSLSQFACENGR--CV-------PSTWKCDS 367 (485)
Q Consensus 309 ~~~~~c~~-g~ci~~~~~cd~~~dc~d~sde~~c~~~~-----------~~~~~~~~~~~~--~i-------~~~~~~~~ 367 (485)
.. ..|.. -.+.+++|+|.....-.-..+...|..+. .+....+.+... .+ ...|.+..
T Consensus 339 ~~-~~C~~~C~n~~g~y~C~C~~G~~~~~~~~~C~~~~~~~~ll~~~~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~ 417 (699)
T 1n7d_A 339 DP-DTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVAS 417 (699)
T ss_dssp SS-SSCTTTCCBCSSCBCCCCCSSCBCCSSCCCCBCCSSCCCBCCCCTTC-CEECTTSCCEECCSCCCTTCCCCEEETTT
T ss_pred CC-CccccccccCCCCeeeeeecccccCCCCCcccccccceeEEecCccceEEEeCCCCcceeeeccCcceEEEcccccc
Confidence 32 12421 13455677775543322222333443211 000011111111 11 12344556
Q ss_pred CCccCCCCC--CccccccCccccc----ceEEEEecCCCCCCccEEecCCCCeEEEeC--CCcEEEEEcCCCCcEEEEeC
Q psy4900 368 ENDCGDGSD--EGDFCSEKTCAYF----QFHAIVLGSNLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTMAMSIVSE 439 (485)
Q Consensus 368 ~~~y~~d~~--~I~~~~~~~c~~g----~~~~~l~~~~~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~~~~i~~~ 439 (485)
+.|||++.. +|.+++++ + +...+++...+..|.||||||..++|||+| .++|++++++|..+++|+..
T Consensus 418 ~~Ly~sD~~~~~I~~~~~~----g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~ 493 (699)
T 1n7d_A 418 NRIYWSDLSQRMICSTQLD----RAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE 493 (699)
T ss_dssp TEEEECCTTTTSBEEEESC----CCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCC
T ss_pred CeEEEEecCCCeEEEEecC----CCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeC
Confidence 889999876 88888888 7 555566667788999999999999999999 68999999999999999988
Q ss_pred CCcccceEEEeCCCCeEEEEeCCC-CcEEEEEccCCCeEEEecC
Q psy4900 440 AAYKASGVALDINAKRLFWCDNLL-DYIETVDYEGKNRFLILRG 482 (485)
Q Consensus 440 ~~~~p~glavD~~~~~lYW~D~~~-~~I~~~~~dG~~r~~~~~~ 482 (485)
.+..|.|||||+..++|||+|++. ++|++++++|+.+++|+..
T Consensus 494 ~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~ 537 (699)
T 1n7d_A 494 QGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE 537 (699)
T ss_dssp SSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCS
T ss_pred CCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeC
Confidence 899999999999999999999886 8999999999999887643
No 5
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=99.98 E-value=5.4e-32 Score=276.78 Aligned_cols=241 Identities=22% Similarity=0.355 Sum_probs=187.7
Q ss_pred CccccccCCCCCCeeeCCCCceeeCCCCCCCCcchhhhccccccccccccceeheeheeeeeeecccCCCCCCCCCCCCC
Q psy4900 183 NCEFTCQASPTGGVCQCPEGQKVANDSRTCLLYMKNNLKQAVRSSTVSSHVKLVLLEVYVNVLKVRKLPTTAEPQSPNPC 262 (485)
Q Consensus 183 ~C~~~C~n~~~~~~C~C~~G~~l~~~~~~C~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~C 262 (485)
.|.+.|.|++++|.|.|++||.+ .+++.|.|++| |
T Consensus 9 ~c~~~C~~~~~~y~C~C~~G~~~-~~~~~C~dide--------------------------------------------C 43 (400)
T 3p5b_L 9 GCSHVCNDLKIGYECLCPDGFQL-VAQRRCEDIDE--------------------------------------------C 43 (400)
T ss_dssp GCSSEEEECSSSEEEECCTTEEE-CSSSCEEECCC--------------------------------------------C
T ss_pred CCCCEeECCCCCeEEECCCCCCc-CCCCcccCchh--------------------------------------------h
Confidence 46789999999999999999998 68899999888 8
Q ss_pred CCCCCCccccccccccCCCCCCccccCCCCccccCCCCCCCCCCCCCceEEcCCCCcccCceeecCCCCCCCCCcCCCCC
Q psy4900 263 GSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQPTCAPGEFQCASGRCVPSTFKCDAENDCGDYSDETGCV 342 (485)
Q Consensus 263 ~~~~g~C~~~C~n~~~~~~~g~~~C~C~~Gy~l~~d~~~C~~~~C~~~~~~c~~g~ci~~~~~cd~~~dc~d~sde~~c~ 342 (485)
. ..+.|++.|+|++ |+|+|.|..||.+..++++|++..-.+.+++. ....+++.+....-........-.
T Consensus 44 ~-~~~~C~~~C~n~~-----g~~~C~C~~g~~~~~~~~~C~~~~~~~~ll~~----~~~~I~~i~l~~~~~~~~~~~~~~ 113 (400)
T 3p5b_L 44 Q-DPDTCSQLCVNLE-----GGYKCQCEEGFQLDPHTKACKAVGSIAYLFFT----NRHEVRKMTLDRSEYTSLIPNLRN 113 (400)
T ss_dssp S-TTSSCSSCCBCCS-----SSCBCCCCTTCCCCTTTSSCCCSTTSCEEEEE----ETTEEEEECTTSCSCEEEECSCSC
T ss_pred h-ccCCCCCccCCCc-----cceeeeccccccccccccceeeccccceeEEe----ccceeEEEccCCcceeEeccccCc
Confidence 7 4678999999999 99999999999999999999885445566665 234556666543211111110000
Q ss_pred --Cc------cccCC----------cccCCCC------ceec-cccc-------cCCCCccCCCCC--CccccccCcccc
Q psy4900 343 --NV------TCSLS----------QFACENG------RCVP-STWK-------CDSENDCGDGSD--EGDFCSEKTCAY 388 (485)
Q Consensus 343 --~~------~~~~~----------~~~~~~~------~~i~-~~~~-------~~~~~~y~~d~~--~I~~~~~~~c~~ 388 (485)
.+ ..+|+ ..+.+.. .++. .+.. ..+++|||+|.. +|.+++++
T Consensus 114 ~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~---- 189 (400)
T 3p5b_L 114 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK---- 189 (400)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT----
T ss_pred ceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC----
Confidence 00 01111 1222210 1111 1111 235899999876 89999999
Q ss_pred cceEEEEecCCCCCCccEEecCCCCeEEEeC---CCcEEEEEcCCCCcEEEEeCCCcccceEEEeCCCCeEEEEeCCCCc
Q psy4900 389 FQFHAIVLGSNLTNPTDLALDPTSGLMFVAD---SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDY 465 (485)
Q Consensus 389 g~~~~~l~~~~~~~p~~iavD~~~~~lywtd---~~~I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~~lYW~D~~~~~ 465 (485)
|+.+.+++...+..|++|||||..|+||||| .++|+|++|||+.+++|+...+.+|+|||||+..++|||+|+..++
T Consensus 190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~ 269 (400)
T 3p5b_L 190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 269 (400)
T ss_dssp TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCE
Confidence 9999999988999999999999999999999 4799999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCeEEEecC
Q psy4900 466 IETVDYEGKNRFLILRG 482 (485)
Q Consensus 466 I~~~~~dG~~r~~~~~~ 482 (485)
|++++++|+.|++|+.+
T Consensus 270 I~~~d~dG~~~~~~~~~ 286 (400)
T 3p5b_L 270 ISSIDVNGGNRKTILED 286 (400)
T ss_dssp EEEEETTSCCCEEEEEC
T ss_pred EEEEeCCCCccEEEEeC
Confidence 99999999999998864
No 6
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=99.97 E-value=2e-31 Score=271.38 Aligned_cols=242 Identities=19% Similarity=0.323 Sum_probs=147.6
Q ss_pred CccccccCCCCCCeeeCCCCceeeCCCCCCCCcchhhhccccccccccccceeheeheeeeeeecccCCCCCCCCCCCCC
Q psy4900 183 NCEFTCQASPTGGVCQCPEGQKVANDSRTCLLYMKNNLKQAVRSSTVSSHVKLVLLEVYVNVLKVRKLPTTAEPQSPNPC 262 (485)
Q Consensus 183 ~C~~~C~n~~~~~~C~C~~G~~l~~~~~~C~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~C 262 (485)
.|++.|.+.+++|+|.|++||.|..+++.|.|++| |
T Consensus 12 ~c~~~C~~~~g~~~C~C~~G~~l~~~~~~C~d~~e--------------------------------------------C 47 (386)
T 3v65_B 12 GCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNE--------------------------------------------C 47 (386)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCcCCCCCcEeECCCCceECCCCCccCccce--------------------------------------------e
Confidence 47889999999999999999999888999999988 8
Q ss_pred CCCCCCccccccccccCCCCCCccccCCCCccccCCCCCCCCCCCCCceEEcCCCCcccCceeecCCCCCCCCCcCCCCC
Q psy4900 263 GSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQPTCAPGEFQCASGRCVPSTFKCDAENDCGDYSDETGCV 342 (485)
Q Consensus 263 ~~~~g~C~~~C~n~~~~~~~g~~~C~C~~Gy~l~~d~~~C~~~~C~~~~~~c~~g~ci~~~~~cd~~~dc~d~sde~~c~ 342 (485)
. ..+.|+|.|+|++ |+|+|.|+.||.|..|+++|++..-.+.+++.. ...+++.+....-.....+..-.
T Consensus 48 ~-~~~~C~~~C~~~~-----g~~~C~C~~g~~l~~d~~~C~~~~~~~~l~~~~----~~~I~~i~~~~~~~~~~~~~~~~ 117 (386)
T 3v65_B 48 A-EEGYCSQGCTNSE-----GAFQCWCEAGYELRPDRRSCKALGPEPVLLFAN----RIDIRQVLPHRSEYTLLLNNLEN 117 (386)
T ss_dssp -----CCTTEEC----------CCEECCTTEEECTTSSCEEECSSCCEEEEEC----BSCEEEECTTSCCCEEEECSCSC
T ss_pred C-CcCcccCcCCCCC-----CCCeEEECCCceEcCCCCeECCccccceeEeec----CccceeeccCCCcEEEEecCCCc
Confidence 6 4678999999999 999999999999999999998743355555552 23456666543211111110000
Q ss_pred --Cc------cccCC----------cccCCCCc--eec-cccc-------cCCCCccCCCCC--CccccccCcccccceE
Q psy4900 343 --NV------TCSLS----------QFACENGR--CVP-STWK-------CDSENDCGDGSD--EGDFCSEKTCAYFQFH 392 (485)
Q Consensus 343 --~~------~~~~~----------~~~~~~~~--~i~-~~~~-------~~~~~~y~~d~~--~I~~~~~~~c~~g~~~ 392 (485)
.+ ..+++ ..+.+... .+. ++.. +.+++|||++.. +|.+++++ |+.+
T Consensus 118 ~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~d----g~~~ 193 (386)
T 3v65_B 118 AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD----GAHR 193 (386)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTT----SCSC
T ss_pred cEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCC----CCce
Confidence 00 01111 11122111 111 1112 245899999886 89999999 9999
Q ss_pred EEEecCCCCCCccEEecCCCCeEEEeC--C-CcEEEEEcCCCCcEEEEeCCCcccceEEEeCCCCeEEEEeCCCCcEEEE
Q psy4900 393 AIVLGSNLTNPTDLALDPTSGLMFVAD--S-NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETV 469 (485)
Q Consensus 393 ~~l~~~~~~~p~~iavD~~~~~lywtd--~-~~I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~ 469 (485)
.+++...+..|++|||||..|+|||+| . ++|+|++|||+.+++++...+.+|+|||||+..++|||+|+..++|+++
T Consensus 194 ~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~ 273 (386)
T 3v65_B 194 KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA 273 (386)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEE
Confidence 999988999999999999999999999 4 8999999999999999999999999999999999999999999999999
Q ss_pred EccCCCeEEEecC
Q psy4900 470 DYEGKNRFLILRG 482 (485)
Q Consensus 470 ~~dG~~r~~~~~~ 482 (485)
+++|+.|++++..
T Consensus 274 d~dG~~~~~~~~~ 286 (386)
T 3v65_B 274 NLDGSHRKAVISQ 286 (386)
T ss_dssp CTTSCSCEEEECS
T ss_pred eCCCCeeEEEEEC
Confidence 9999999888753
No 7
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=99.93 E-value=2.6e-26 Score=230.50 Aligned_cols=208 Identities=17% Similarity=0.281 Sum_probs=149.7
Q ss_pred CCCCCCCCccccccccccCCCCCCccccCCCCccccCCCCCCCCCCCCCceEEcCCCCcccCceeecCCCCCCCCCcCCC
Q psy4900 261 PCGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQPTCAPGEFQCASGRCVPSTFKCDAENDCGDYSDETG 340 (485)
Q Consensus 261 ~C~~~~g~C~~~C~n~~~~~~~g~~~C~C~~Gy~l~~d~~~C~~~~C~~~~~~c~~g~ci~~~~~cd~~~dc~d~sde~~ 340 (485)
+|. .++.|+|.|.|++ |+|+|.|+.||.|.+|+++|++..-.+.+++.. ...+++.+....-........
T Consensus 3 ec~-~~~~C~~~C~n~~-----g~~~C~C~~g~~l~~d~~~C~~~~~~~~ll~~~----~~~I~~i~~~g~~~~~~~~~~ 72 (349)
T 3v64_C 3 ECA-EEGYCSQGCTNSE-----GAFQCWCEAGYELRPDRRSCKALGPEPVLLFAN----RIDIRQVLPHRSEYTLLLNNL 72 (349)
T ss_dssp -------CCSSEECCC--------CCEECCTTEEECTTSSCEEESSSCCEEEEEC----BSCEEEECTTSCCEEEEECSC
T ss_pred ccC-CCCCCcCeeecCC-----CCeEEECCCCccCCCCCCcccccccCceeEeec----ccceEEEeCCCCeeEEeecCC
Confidence 487 6789999999999 999999999999999999998743366666652 234555555432111100000
Q ss_pred C--CCc------cccCC----------cccCCCCc--eec-cccc-------cCCCCccCCCCC--CccccccCcccccc
Q psy4900 341 C--VNV------TCSLS----------QFACENGR--CVP-STWK-------CDSENDCGDGSD--EGDFCSEKTCAYFQ 390 (485)
Q Consensus 341 c--~~~------~~~~~----------~~~~~~~~--~i~-~~~~-------~~~~~~y~~d~~--~I~~~~~~~c~~g~ 390 (485)
- ..+ ...++ ..+.+... .+. ++.. ..+++|||++.. .|.+++++ |+
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~d----G~ 148 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD----GA 148 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT----SC
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCC----CC
Confidence 0 000 01111 11222211 111 1112 245899999886 89999999 99
Q ss_pred eEEEEecCCCCCCccEEecCCCCeEEEeC--C-CcEEEEEcCCCCcEEEEeCCCcccceEEEeCCCCeEEEEeCCCCcEE
Q psy4900 391 FHAIVLGSNLTNPTDLALDPTSGLMFVAD--S-NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 467 (485)
Q Consensus 391 ~~~~l~~~~~~~p~~iavD~~~~~lywtd--~-~~I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~ 467 (485)
.+.+++...+..|++|||||..|+|||+| . ++|+|++|||+.+++++..++.+|+|||||+..++|||+|+..++|+
T Consensus 149 ~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~ 228 (349)
T 3v64_C 149 HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIE 228 (349)
T ss_dssp SCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred ceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEE
Confidence 99999888899999999999999999999 4 89999999999999999889999999999999999999999999999
Q ss_pred EEEccCCCeEEEecC
Q psy4900 468 TVDYEGKNRFLILRG 482 (485)
Q Consensus 468 ~~~~dG~~r~~~~~~ 482 (485)
+++++|+.|++++..
T Consensus 229 ~~~~dG~~~~~~~~~ 243 (349)
T 3v64_C 229 RANLDGSHRKAVISQ 243 (349)
T ss_dssp EEETTSCSCEEEECS
T ss_pred EEeCCCCceEEEEeC
Confidence 999999999888754
No 8
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.93 E-value=3.6e-25 Score=237.89 Aligned_cols=218 Identities=23% Similarity=0.431 Sum_probs=161.2
Q ss_pred CCCCCCCCCCCCCCCCccccccccccCCCCCCccccCCCCccccCCCCCCCCCCCCCceEEcCCCCcccCceeecCCCCC
Q psy4900 253 TAEPQSPNPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQPTCAPGEFQCASGRCVPSTFKCDAENDC 332 (485)
Q Consensus 253 ~~e~~~~~~C~~~~g~C~~~C~n~~~~~~~g~~~C~C~~Gy~l~~d~~~C~~~~C~~~~~~c~~g~ci~~~~~cd~~~dc 332 (485)
..+|...++|...++.|+|+|.+++.. .+|+|.|+.||.|.+|+++|.+.+ .+.+++.... .+++.++...-
T Consensus 266 ~~qp~~~n~C~~~ng~Cs~lCl~~~~~---~~~~C~C~~g~~l~~d~~~C~~~~-~~~Ll~~~~~----~i~~i~l~~~~ 337 (619)
T 3s94_A 266 QRQPNATNPCGIDNGGCSHLCLMSPVK---PFYQCACPTGVKLLENGKTCKDGA-TELLLLARRT----DLRRISLDTPD 337 (619)
T ss_dssp GGSCCCCCTTTTTGGGCSSEEEECSST---TSEEEECCTTCCBCTTSSCBCSSC-SEEEEEEESS----CEEEEESSSTT
T ss_pred ccCCCccccccCCCCcccceEECCCCC---CCceEeCCchheecccCcccCCCC-ceEEEEEccc----ceEEEecCCCc
Confidence 345556788987789999999988722 479999999999999999998732 3455555322 23333332211
Q ss_pred C-CCCcC-CCCCC---c----------------cccCCcccCCCCc--eec-ccccc-------CCCCccCCCCC--Ccc
Q psy4900 333 G-DYSDE-TGCVN---V----------------TCSLSQFACENGR--CVP-STWKC-------DSENDCGDGSD--EGD 379 (485)
Q Consensus 333 ~-d~sde-~~c~~---~----------------~~~~~~~~~~~~~--~i~-~~~~~-------~~~~~y~~d~~--~I~ 379 (485)
. +.... .+-.. + ..++...+.+... ++. ++..| .+++|||+|.. +|.
T Consensus 338 ~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~ 417 (619)
T 3s94_A 338 FTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIE 417 (619)
T ss_dssp CCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred cceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEE
Confidence 0 00000 00000 0 0112222333221 121 22223 34899999987 899
Q ss_pred ccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC---CCcEEEEEcCCCCcEEEEeCCCcccceEEEeCCCCeE
Q psy4900 380 FCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD---SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRL 456 (485)
Q Consensus 380 ~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd---~~~I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~~l 456 (485)
+++++ |+.+++|+...+.+|++|||||..|+||||| .++|+|+.|||+.+++|+...+.+|+|||||+..++|
T Consensus 418 v~~~~----G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~L 493 (619)
T 3s94_A 418 VTRLN----GTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKI 493 (619)
T ss_dssp EEETT----SCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEE
T ss_pred EEeCC----CCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEE
Confidence 99999 9999999988999999999999999999999 4899999999999999998889999999999999999
Q ss_pred EEEeCCCCcEEEEEccCCCeEEEecC
Q psy4900 457 FWCDNLLDYIETVDYEGKNRFLILRG 482 (485)
Q Consensus 457 YW~D~~~~~I~~~~~dG~~r~~~~~~ 482 (485)
||+|++.++|++++++|+.|++|+.+
T Consensus 494 Y~aD~~~~~I~~~~~dG~~~~~~~~~ 519 (619)
T 3s94_A 494 YWGDAKTDKIEVMNTDGTGRRVLVED 519 (619)
T ss_dssp EEEETTTTEEEEEESSSCCCEEEEEC
T ss_pred EEEECCCCEEEEEecCCCceEEEecc
Confidence 99999999999999999999998753
No 9
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.92 E-value=5.1e-25 Score=236.93 Aligned_cols=210 Identities=22% Similarity=0.335 Sum_probs=155.7
Q ss_pred CCCCCCCCCCCccccccccccCCCCCCccccCCCCccccCCCCCCCCCCCCCceEEcCCCCcccCceeecCCCC-CCCCC
Q psy4900 258 SPNPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQPTCAPGEFQCASGRCVPSTFKCDAEND-CGDYS 336 (485)
Q Consensus 258 ~~~~C~~~~g~C~~~C~n~~~~~~~g~~~C~C~~Gy~l~~d~~~C~~~~C~~~~~~c~~g~ci~~~~~cd~~~d-c~d~s 336 (485)
..++|...++.|+|+|.+++. ++|+|.|+.||.|..|+++|.++ .+.+++... ..+++..+... -.+..
T Consensus 264 ~~n~C~~~ng~C~~~C~~~~~----~~~~C~C~~g~~l~~d~~~C~~~--~~~Ll~s~~----~~i~~i~l~~~~~~~~~ 333 (628)
T 4a0p_A 264 GWNECASSNGHCSHLCLAVPV----GGFVCGCPAHYSLNADNRTCSAP--TTFLLFSQK----SAINRMVIDEQQSPDII 333 (628)
T ss_dssp CCCTTTTTGGGCSSEEEEETT----TEEEEECSTTCEECTTSSCEECC--SSEEEEEET----TEEEEECCCTTCCCCEE
T ss_pred cceEeccCCCCcchhhhcCCC----CCeeEEcCCCcEecccCCcCccc--cceeeeecc----ceEEEEecccccCceEE
Confidence 467798778999999999872 68999999999999999999763 345555422 22233332211 10100
Q ss_pred cC-CCCCC---c----------------cccCCcccCCCCc--eecc-------cccc-------CCCCccCCCCC--Cc
Q psy4900 337 DE-TGCVN---V----------------TCSLSQFACENGR--CVPS-------TWKC-------DSENDCGDGSD--EG 378 (485)
Q Consensus 337 de-~~c~~---~----------------~~~~~~~~~~~~~--~i~~-------~~~~-------~~~~~y~~d~~--~I 378 (485)
.. .+-.+ + ..++...+.+... ++.. +..| .+++|||+|+. .|
T Consensus 334 l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I 413 (628)
T 4a0p_A 334 LPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVI 413 (628)
T ss_dssp CCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEE
T ss_pred EEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEE
Confidence 00 00000 0 0112222233221 2211 1122 35899999876 89
Q ss_pred cccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC--CC--cEEEEEcCCCCcEEEEeCCCcccceEEEeCCCC
Q psy4900 379 DFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD--SN--QILRTNMDGTMAMSIVSEAAYKASGVALDINAK 454 (485)
Q Consensus 379 ~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd--~~--~I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~ 454 (485)
.+++++ |+.+.+|+...+.+|++|||||..|+||||| .. +|+|++|||+.+++|+...+.+|+|||||+..+
T Consensus 414 ~v~~~~----G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~ 489 (628)
T 4a0p_A 414 NVTRLD----GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLG 489 (628)
T ss_dssp EEEETT----SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTT
T ss_pred EEEECC----CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCC
Confidence 999999 9999999988999999999999999999999 32 899999999999999998999999999999999
Q ss_pred eEEEEeCCCCcEEEEEccCCCeEEEec
Q psy4900 455 RLFWCDNLLDYIETVDYEGKNRFLILR 481 (485)
Q Consensus 455 ~lYW~D~~~~~I~~~~~dG~~r~~~~~ 481 (485)
+|||+|++.++|+++++||+.|++|+.
T Consensus 490 ~LYw~D~~~~~I~~~~~dG~~r~~~~~ 516 (628)
T 4a0p_A 490 KLFWADSDLRRIESSDLSGANRIVLED 516 (628)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred EEEEEeCCCCEEEEEeCCCCceEEEEc
Confidence 999999999999999999999999885
No 10
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=99.91 E-value=4.6e-24 Score=217.97 Aligned_cols=211 Identities=18% Similarity=0.306 Sum_probs=157.3
Q ss_pred CCCCCCCCccccccccccCCCCCCccccCCCCccccCCCCCCCC-CCCCCceEEcCC-CCcccCceeecCCCCCCCCCcC
Q psy4900 261 PCGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQ-PTCAPGEFQCAS-GRCVPSTFKCDAENDCGDYSDE 338 (485)
Q Consensus 261 ~C~~~~g~C~~~C~n~~~~~~~g~~~C~C~~Gy~l~~d~~~C~~-~~C~~~~~~c~~-g~ci~~~~~cd~~~dc~d~sde 338 (485)
+|...+..|.+.|+|++ ++|+|.|+.||.| .++++|++ ++|.. .-.|.. -.+.+++|+|.....-.-..+.
T Consensus 2 eC~~~~~~c~~~C~~~~-----~~y~C~C~~G~~~-~~~~~C~dideC~~-~~~C~~~C~n~~g~~~C~C~~g~~~~~~~ 74 (400)
T 3p5b_L 2 ECLDNNGGCSHVCNDLK-----IGYECLCPDGFQL-VAQRRCEDIDECQD-PDTCSQLCVNLEGGYKCQCEEGFQLDPHT 74 (400)
T ss_dssp CTTTTGGGCSSEEEECS-----SSEEEECCTTEEE-CSSSCEEECCCCST-TSSCSSCCBCCSSSCBCCCCTTCCCCTTT
T ss_pred cccCCCCCCCCEeECCC-----CCeEEECCCCCCc-CCCCcccCchhhhc-cCCCCCccCCCccceeeeccccccccccc
Confidence 37756678999999999 9999999999998 67899987 78863 123422 1234567788665443333344
Q ss_pred CCCCCcc-----------ccCCcccCCCCc--ee-------ccccccCCCCccCCCCC--CccccccCccccc----ceE
Q psy4900 339 TGCVNVT-----------CSLSQFACENGR--CV-------PSTWKCDSENDCGDGSD--EGDFCSEKTCAYF----QFH 392 (485)
Q Consensus 339 ~~c~~~~-----------~~~~~~~~~~~~--~i-------~~~~~~~~~~~y~~d~~--~I~~~~~~~c~~g----~~~ 392 (485)
..|..+. .+....+.+... .+ ...|.+..++|||+|.. +|.+++++ | +..
T Consensus 75 ~~C~~~~~~~~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~----g~~~~~~~ 150 (400)
T 3p5b_L 75 KACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLD----RAHGVSSY 150 (400)
T ss_dssp SSCCCSTTSCEEEEEETTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC----------CCC
T ss_pred cceeeccccceeEEeccceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcc----cCCCCCcc
Confidence 4453211 111112222211 12 22345566899999876 88888888 7 446
Q ss_pred EEEecCCCCCCccEEecCCCCeEEEeC--CCcEEEEEcCCCCcEEEEeCCCcccceEEEeCCCCeEEEEeCCC-CcEEEE
Q psy4900 393 AIVLGSNLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLL-DYIETV 469 (485)
Q Consensus 393 ~~l~~~~~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~~lYW~D~~~-~~I~~~ 469 (485)
.+++...+..|.||||||..++|||+| .++|++++++|..+++++...+..|.|||||+..++|||+|++. ++|+++
T Consensus 151 ~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~ 230 (400)
T 3p5b_L 151 DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 230 (400)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEE
T ss_pred eEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEE
Confidence 677777899999999999999999999 68999999999999999998999999999999999999999885 899999
Q ss_pred EccCCCeEEEecC
Q psy4900 470 DYEGKNRFLILRG 482 (485)
Q Consensus 470 ~~dG~~r~~~~~~ 482 (485)
+++|+.+++++..
T Consensus 231 ~~dG~~~~~~~~~ 243 (400)
T 3p5b_L 231 GLNGVDIYSLVTE 243 (400)
T ss_dssp ETTSCSCEEEECS
T ss_pred eCCCCccEEEEEC
Confidence 9999999988764
No 11
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=99.91 E-value=2e-24 Score=219.62 Aligned_cols=213 Identities=23% Similarity=0.368 Sum_probs=118.8
Q ss_pred CCCCCCCCCccccccccccCCCCCCccccCCCCccccCCCCCCCC-CCCCCceEEcCCC-CcccCceeecCCCCCCCCCc
Q psy4900 260 NPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQ-PTCAPGEFQCASG-RCVPSTFKCDAENDCGDYSD 337 (485)
Q Consensus 260 ~~C~~~~g~C~~~C~n~~~~~~~g~~~C~C~~Gy~l~~d~~~C~~-~~C~~~~~~c~~g-~ci~~~~~cd~~~dc~d~sd 337 (485)
++|...++.|+|.|.+.. |+|+|.|++||+|..++++|++ ++|. ....|..+ .+.+++++|.....-.-..|
T Consensus 4 ~~C~~~~~~c~~~C~~~~-----g~~~C~C~~G~~l~~~~~~C~d~~eC~-~~~~C~~~C~~~~g~~~C~C~~g~~l~~d 77 (386)
T 3v65_B 4 ENCNVNNGGCAQKCQMIR-----GAVQCTCHTGYRLTEDGRTCQDVNECA-EEGYCSQGCTNSEGAFQCWCEAGYELRPD 77 (386)
T ss_dssp ------------------------------------------------------CCTTEEC-----CCEECCTTEEECTT
T ss_pred CcccCCCCCCCCCCcCCC-----CCcEeECCCCceECCCCCccCccceeC-CcCcccCcCCCCCCCCeEEECCCceEcCC
Confidence 448766788999999988 9999999999999999999987 7886 22334332 23445677754332211122
Q ss_pred CCCCCCcc-----------ccCCcccCCCCc--ee-------ccccccCCCCccCCCCC--CccccccCcccccceEEEE
Q psy4900 338 ETGCVNVT-----------CSLSQFACENGR--CV-------PSTWKCDSENDCGDGSD--EGDFCSEKTCAYFQFHAIV 395 (485)
Q Consensus 338 e~~c~~~~-----------~~~~~~~~~~~~--~i-------~~~~~~~~~~~y~~d~~--~I~~~~~~~c~~g~~~~~l 395 (485)
...|..+. .+....+.+... .+ ...|.+..+.|||+|.. +|.+++++ |+...++
T Consensus 78 ~~~C~~~~~~~~l~~~~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~----g~~~~~~ 153 (386)
T 3v65_B 78 RRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLN----GSNVEEV 153 (386)
T ss_dssp SSCEEECSSCCEEEEECBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT----SCCEEEE
T ss_pred CCeECCccccceeEeecCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecC----CCCcEEE
Confidence 23342110 111111111111 11 12345566899999876 89999999 9888888
Q ss_pred ecCCCCCCccEEecCCCCeEEEeC--CCcEEEEEcCCCCcEEEEeCCCcccceEEEeCCCCeEEEEeCCC-CcEEEEEcc
Q psy4900 396 LGSNLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLL-DYIETVDYE 472 (485)
Q Consensus 396 ~~~~~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~~lYW~D~~~-~~I~~~~~d 472 (485)
+...+..|.||||||..++|||+| .++|++++++|..+++++...+..|.|||||+..++|||+|+.. ++|++++++
T Consensus 154 ~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d 233 (386)
T 3v65_B 154 VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD 233 (386)
T ss_dssp ECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred EeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC
Confidence 888899999999999999999999 68999999999999999998999999999999999999999998 999999999
Q ss_pred CCCeEEEecC
Q psy4900 473 GKNRFLILRG 482 (485)
Q Consensus 473 G~~r~~~~~~ 482 (485)
|+.+++++..
T Consensus 234 G~~~~~~~~~ 243 (386)
T 3v65_B 234 GSGRRIIADT 243 (386)
T ss_dssp SCSCEEEECS
T ss_pred CCCcEEEEEC
Confidence 9999988753
No 12
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B
Probab=99.79 E-value=9.1e-20 Score=141.56 Aligned_cols=77 Identities=43% Similarity=1.028 Sum_probs=72.4
Q ss_pred CCCCCCCeecCCCCceecCcceeCCCCCCCCCCcc-cCCCCCccCC-CcccCCCCcccCccccCCCCCCCCCCCCCCCCC
Q psy4900 54 LSCDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDE-EKCNFTACHV-GQFKCANSLCIPVSYHCDGYRDCIDGSDETNCT 131 (485)
Q Consensus 54 ~~C~~~~f~C~~g~~Ci~~~~~Cd~~~dC~d~sDe-~~C~~~~C~~-~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDe~~C~ 131 (485)
..|.+++|+|.+|. ||+..|+|||+.||.|+||| .+|....|.+ ++|+|.+++||+..|+|||+.||.|||||.+|.
T Consensus 3 ~~C~~~~f~C~~g~-Ci~~~~~CDg~~DC~DgsDE~~~C~~~~C~~~~~f~C~~g~CI~~~~~CDG~~DC~DgSDE~~C~ 81 (82)
T 2fyj_A 3 RTCPPNQFSCASGR-CIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCININWRCDNDNDCGDNSDEAGCS 81 (82)
T ss_dssp SSSCTTEEETTSSC-EEETTSSSSCSSSSCSTTTTTSSCCCSSSCSSSEEECTTSCEEETTCBSSSSBCCSSSSSCSCCC
T ss_pred CCCCCCceEeCCCC-EEeccccCCCcccCCCccccccccccccCCCCCceECCCCCeEcHHHccCCCCcCCCCccccCCC
Confidence 56889999999987 99999999999999999999 8998888965 899999999999999999999999999999885
No 13
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B
Probab=99.79 E-value=1.4e-19 Score=140.57 Aligned_cols=78 Identities=46% Similarity=1.010 Sum_probs=71.8
Q ss_pred CCCCCCCcEEecCCCCceecCCcccCCcCCCCCCCcC-CCCCCCCCCCCCC-CCeecCCCCceecCcceeCCCCCCCCCC
Q psy4900 9 FRKCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDE-EGCPATTGLSCDL-DQFRCANGQKCIDAKLKCNYHNDCGDNS 86 (485)
Q Consensus 9 ~~~C~~~~f~C~c~~g~ci~~~~~Cd~~~dC~d~sdE-~~C~~~~~~~C~~-~~f~C~~g~~Ci~~~~~Cd~~~dC~d~s 86 (485)
..+|.+++|+| .+|.||+..|+|||+.||.|+||| .+|.. ..|.+ .+|+|.+|. ||+..|+|||+.||.|+|
T Consensus 2 ~~~C~~~~f~C--~~g~Ci~~~~~CDg~~DC~DgsDE~~~C~~---~~C~~~~~f~C~~g~-CI~~~~~CDG~~DC~DgS 75 (82)
T 2fyj_A 2 ARTCPPNQFSC--ASGRCIPISWTCDLDDDCGDRSDESASCAY---PTCFPLTQFTCNNGR-CININWRCDNDNDCGDNS 75 (82)
T ss_dssp CSSSCTTEEET--TSSCEEETTSSSSCSSSSCSTTTTTSSCCC---SSSCSSSEEECTTSC-EEETTCBSSSSBCCSSSS
T ss_pred CCCCCCCceEe--CCCCEEeccccCCCcccCCCcccccccccc---ccCCCCCceECCCCC-eEcHHHccCCCCcCCCCc
Confidence 36799999999 789999999999999999999999 89986 67954 999999997 999999999999999999
Q ss_pred cccCCC
Q psy4900 87 DEEKCN 92 (485)
Q Consensus 87 De~~C~ 92 (485)
||.+|.
T Consensus 76 DE~~C~ 81 (82)
T 2fyj_A 76 DEAGCS 81 (82)
T ss_dssp SCSCCC
T ss_pred cccCCC
Confidence 998874
No 14
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=99.78 E-value=6.4e-19 Score=174.17 Aligned_cols=112 Identities=27% Similarity=0.521 Sum_probs=105.6
Q ss_pred CCCCccCCCCC--CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC---CCcEEEEEcCCCCcEEEEeCC
Q psy4900 366 DSENDCGDGSD--EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD---SNQILRTNMDGTMAMSIVSEA 440 (485)
Q Consensus 366 ~~~~~y~~d~~--~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd---~~~I~r~~~dG~~~~~i~~~~ 440 (485)
.++++||++.. +|.+++++ |+.+.+++...+..|++|||||..|+|||+| .++|+|++|||+.+++|+..+
T Consensus 89 ~~g~ly~~d~~~~~I~~~~~d----G~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~ 164 (318)
T 3sov_A 89 LGEKLYWTDSETNRIEVSNLD----GSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSE 164 (318)
T ss_dssp TTTEEEEEETTTTEEEEEETT----SCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSS
T ss_pred CCCeEEEEECCCCEEEEEECC----CCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECC
Confidence 46899999876 89999999 9999999888899999999999999999999 489999999999999999889
Q ss_pred CcccceEEEeCCCCeEEEEeCCCCcEEEEEccCCCeEEEec
Q psy4900 441 AYKASGVALDINAKRLFWCDNLLDYIETVDYEGKNRFLILR 481 (485)
Q Consensus 441 ~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG~~r~~~~~ 481 (485)
+.+|+|||||+..++|||+|+..++|++++++|+.|++|+.
T Consensus 165 l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~ 205 (318)
T 3sov_A 165 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK 205 (318)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEec
Confidence 99999999999999999999999999999999999999886
No 15
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Probab=99.77 E-value=6.5e-20 Score=141.30 Aligned_cols=76 Identities=42% Similarity=0.992 Sum_probs=70.6
Q ss_pred CCCCCCeecCCCCceecCcceeCCCCCCCCCCcccCCCCCccCCCcccCCCCcccCccccCCCCCCCCCCCCC--CCCC
Q psy4900 55 SCDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDEEKCNFTACHVGQFKCANSLCIPVSYHCDGYRDCIDGSDE--TNCT 131 (485)
Q Consensus 55 ~C~~~~f~C~~g~~Ci~~~~~Cd~~~dC~d~sDe~~C~~~~C~~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDe--~~C~ 131 (485)
.|++++|+|.+|. ||+..|+|||+.||.|+|||.+|....|.+++|+|.+++|||..|+|||+.||.||||| .+|.
T Consensus 2 ~C~~~~F~C~~g~-CI~~~~~CDg~~DC~DgSDE~~C~~~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~dgsDE~~~~C~ 79 (80)
T 2fcw_B 2 TCSQAEFRCHDGK-CISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCR 79 (80)
T ss_dssp CCCTTEEECTTSC-EEEGGGTTSSSCCSTTCTTTTTHHHHHCCTTEEECTTSCEEEGGGTTSSSCCSTTCGGGCGGGC-
T ss_pred CCCCCccCCCCCC-EEeeecccCCcccCCCcccccccccccCCceeeECCCCCEEecccccCCCcCCCCCCCcCcccCC
Confidence 4788999999987 99999999999999999999999777899999999999999999999999999999999 5553
No 16
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Probab=99.76 E-value=1.9e-19 Score=138.67 Aligned_cols=75 Identities=39% Similarity=0.954 Sum_probs=70.0
Q ss_pred CCCCCcEEecCCCCceecCCcccCCcCCCCCCCcCCCCCCCCCCCCCCCCeecCCCCceecCcceeCCCCCCCCCCcc--
Q psy4900 11 KCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCPATTGLSCDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDE-- 88 (485)
Q Consensus 11 ~C~~~~f~C~c~~g~ci~~~~~Cd~~~dC~d~sdE~~C~~~~~~~C~~~~f~C~~g~~Ci~~~~~Cd~~~dC~d~sDe-- 88 (485)
+|.+++|+| .+|.||+..|+|||+.||.|||||.+|.. ..|.+.+|+|.+|. ||+..|+|||+.||.|+|||
T Consensus 2 ~C~~~~F~C--~~g~CI~~~~~CDg~~DC~DgSDE~~C~~---~~C~~~~f~C~~g~-Ci~~~~~CDg~~DC~dgsDE~~ 75 (80)
T 2fcw_B 2 TCSQAEFRC--HDGKCISRQFVCDSDRDCLDGSDEASCPV---LTCGPASFQCNSST-CIPQLWACDNDPDCEDGSDEWP 75 (80)
T ss_dssp CCCTTEEEC--TTSCEEEGGGTTSSSCCSTTCTTTTTHHH---HHCCTTEEECTTSC-EEEGGGTTSSSCCSTTCGGGCG
T ss_pred CCCCCccCC--CCCCEEeeecccCCcccCCCccccccccc---ccCCceeeECCCCC-EEecccccCCCcCCCCCCCcCc
Confidence 589999999 78999999999999999999999999974 57999999999987 99999999999999999999
Q ss_pred cCC
Q psy4900 89 EKC 91 (485)
Q Consensus 89 ~~C 91 (485)
.+|
T Consensus 76 ~~C 78 (80)
T 2fcw_B 76 QRC 78 (80)
T ss_dssp GGC
T ss_pred ccC
Confidence 555
No 17
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=99.74 E-value=5.9e-18 Score=167.14 Aligned_cols=113 Identities=27% Similarity=0.408 Sum_probs=104.5
Q ss_pred CCCCccCCCCC--CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC--C-CcEEEEEcCCCCcEEEEeCC
Q psy4900 366 DSENDCGDGSD--EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD--S-NQILRTNMDGTMAMSIVSEA 440 (485)
Q Consensus 366 ~~~~~y~~d~~--~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd--~-~~I~r~~~dG~~~~~i~~~~ 440 (485)
.++++||++.. +|.+++++ |....+++...+..|++|||||..|+|||+| . ++|+|++|||+.+++++...
T Consensus 87 ~~~~ly~~d~~~~~I~~~~~~----g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~ 162 (316)
T 1ijq_A 87 IHSNIYWTDSVLGTVSVADTK----GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN 162 (316)
T ss_dssp TTTEEEEEETTTTEEEEEETT----SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS
T ss_pred cCCeEEEEECCCCEEEEEeCC----CCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECC
Confidence 46899999876 89999999 9998888877899999999999999999999 3 79999999999999999888
Q ss_pred CcccceEEEeCCCCeEEEEeCCCCcEEEEEccCCCeEEEecC
Q psy4900 441 AYKASGVALDINAKRLFWCDNLLDYIETVDYEGKNRFLILRG 482 (485)
Q Consensus 441 ~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG~~r~~~~~~ 482 (485)
+.+|+|||||+..++|||+|+..++|++++++|+.+++++..
T Consensus 163 ~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~ 204 (316)
T 1ijq_A 163 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED 204 (316)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC
T ss_pred CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeec
Confidence 999999999999999999999999999999999999998753
No 18
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.74 E-value=3.2e-18 Score=183.90 Aligned_cols=112 Identities=27% Similarity=0.521 Sum_probs=102.8
Q ss_pred CCCCccCCCCC--CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC---CCcEEEEEcCCCCcEEEEeCC
Q psy4900 366 DSENDCGDGSD--EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD---SNQILRTNMDGTMAMSIVSEA 440 (485)
Q Consensus 366 ~~~~~y~~d~~--~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd---~~~I~r~~~dG~~~~~i~~~~ 440 (485)
.++++||++.. +|.+++++ |+.+++|+...+..|++|||||..|+||||| .++|+|+.|||+.+++|+...
T Consensus 94 ~~~~ly~~d~~~~~I~v~~~d----G~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~ 169 (619)
T 3s94_A 94 LGEKLYWTDSETNRIEVSNLD----GSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSE 169 (619)
T ss_dssp TTTEEEEEETTTTEEEEEETT----SCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS
T ss_pred cCCEEEEEeCCCCEEEEEECC----CCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCC
Confidence 46899999876 89999999 9999999988999999999999999999999 479999999999999999889
Q ss_pred CcccceEEEeCCCCeEEEEeCCCCcEEEEEccCCCeEEEec
Q psy4900 441 AYKASGVALDINAKRLFWCDNLLDYIETVDYEGKNRFLILR 481 (485)
Q Consensus 441 ~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG~~r~~~~~ 481 (485)
+.+|+|||||+..++|||+|...++|++++++|+.|++++.
T Consensus 170 ~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~ 210 (619)
T 3s94_A 170 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK 210 (619)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC----
T ss_pred CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEe
Confidence 99999999999999999999999999999999999998876
No 19
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.73 E-value=7.7e-18 Score=181.07 Aligned_cols=112 Identities=27% Similarity=0.421 Sum_probs=103.8
Q ss_pred CCCCccCCCCC--CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC---CCcEEEEEcCCCCcEEEEeCC
Q psy4900 366 DSENDCGDGSD--EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD---SNQILRTNMDGTMAMSIVSEA 440 (485)
Q Consensus 366 ~~~~~y~~d~~--~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd---~~~I~r~~~dG~~~~~i~~~~ 440 (485)
.+++|||+|.. +|.+++++ |+.+++|+...+.+|++|||||..|+||||| .++|+|++|||+.+++|+ ..
T Consensus 90 ~~~~LY~tD~~~~~I~v~~~d----G~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-~~ 164 (628)
T 4a0p_A 90 LGKNLYWADTGTNRIEVSKLD----GQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-PN 164 (628)
T ss_dssp TTTEEEEEETTTTEEEEEETT----STTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CS
T ss_pred CCCEEEEEECCCCEEEEEecC----CCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-CC
Confidence 45899999986 89999999 9999999988999999999999999999999 589999999999999998 48
Q ss_pred CcccceEEEeCCCCeEEEEeCCCCcEEEEEccCCCeEEEecC
Q psy4900 441 AYKASGVALDINAKRLFWCDNLLDYIETVDYEGKNRFLILRG 482 (485)
Q Consensus 441 ~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG~~r~~~~~~ 482 (485)
+.+|+|||||+..++|||+|+..++|++++++|+.|+++...
T Consensus 165 ~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~ 206 (628)
T 4a0p_A 165 VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADD 206 (628)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC
T ss_pred CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeecc
Confidence 999999999999999999999999999999999999776543
No 20
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=99.68 E-value=1.2e-16 Score=160.11 Aligned_cols=116 Identities=19% Similarity=0.197 Sum_probs=106.1
Q ss_pred ccccCCCCccCCCCC--CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC--CCcEEEEEcCCCCcEEEE
Q psy4900 362 TWKCDSENDCGDGSD--EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTMAMSIV 437 (485)
Q Consensus 362 ~~~~~~~~~y~~d~~--~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~~~~i~ 437 (485)
.|.+..+.|||+|.. +|.+++++ |+....++..++..|.||||||..++|||+| ..+|++++++|+.+++++
T Consensus 79 ~~d~~~~~ly~~D~~~~~I~r~~~~----g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~ 154 (349)
T 3v64_C 79 DFHHRRELVFWSDVTLDRILRANLN----GSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL 154 (349)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETT----SCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred EEeccccEEEEEeccCCceEEEecC----CCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEE
Confidence 345567899999866 89999999 9888888888899999999999999999999 689999999999999999
Q ss_pred eCCCcccceEEEeCCCCeEEEEeCCC-CcEEEEEccCCCeEEEec
Q psy4900 438 SEAAYKASGVALDINAKRLFWCDNLL-DYIETVDYEGKNRFLILR 481 (485)
Q Consensus 438 ~~~~~~p~glavD~~~~~lYW~D~~~-~~I~~~~~dG~~r~~~~~ 481 (485)
...+..|+|||||+..++|||+|+.. ++|+++++||+.+++++.
T Consensus 155 ~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~ 199 (349)
T 3v64_C 155 WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD 199 (349)
T ss_dssp CTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCC
T ss_pred eCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEE
Confidence 88999999999999999999999998 999999999999988765
No 21
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=99.65 E-value=2.7e-16 Score=155.33 Aligned_cols=118 Identities=20% Similarity=0.247 Sum_probs=104.2
Q ss_pred cccccCCCCccCCCCC--CccccccCcccccceE-EEEecCCCCCCccEEecCCCCeEEEeC--CCcEEEEEcCCCCcEE
Q psy4900 361 STWKCDSENDCGDGSD--EGDFCSEKTCAYFQFH-AIVLGSNLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTMAMS 435 (485)
Q Consensus 361 ~~~~~~~~~~y~~d~~--~I~~~~~~~c~~g~~~-~~l~~~~~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~~~~ 435 (485)
..|.+..++|||+|.. +|.+++++ |+.. .+++...+..|.||||||..++|||+| ..+|++++++|..+++
T Consensus 40 ld~d~~~~~lyw~D~~~~~I~r~~~~----g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 40 VDFVFSHGLIYWSDVSEEAIKRTEFN----KTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEEETT----SSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred EEEEeCCCEEEEEECCCCcEEEEEcc----CCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 4466667899999876 88889988 7753 456667889999999999999999999 6899999999999999
Q ss_pred EEeCCCcccceEEEeCCCCeEEEEeCC-CCcEEEEEccCCCeEEEecC
Q psy4900 436 IVSEAAYKASGVALDINAKRLFWCDNL-LDYIETVDYEGKNRFLILRG 482 (485)
Q Consensus 436 i~~~~~~~p~glavD~~~~~lYW~D~~-~~~I~~~~~dG~~r~~~~~~ 482 (485)
++...+..|.|||||+..++|||+|++ .++|+++++||+.+++++..
T Consensus 116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~ 163 (318)
T 3sov_A 116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS 163 (318)
T ss_dssp EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEEC
Confidence 998899999999999999999999986 68999999999999988753
No 22
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=99.63 E-value=1.2e-15 Score=150.58 Aligned_cols=116 Identities=13% Similarity=0.128 Sum_probs=100.3
Q ss_pred ccccCCCCccCCCCC--CccccccCccccc----ceEEEEecCCCCCCccEEecCCCCeEEEeC--CCcEEEEEcCCCCc
Q psy4900 362 TWKCDSENDCGDGSD--EGDFCSEKTCAYF----QFHAIVLGSNLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTMA 433 (485)
Q Consensus 362 ~~~~~~~~~y~~d~~--~I~~~~~~~c~~g----~~~~~l~~~~~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~~ 433 (485)
.+.+.++.+||+|.. +|.+++++ | +...+++...+..|.||||||..++|||+| .++|++++++|..+
T Consensus 36 ~~d~~~~~ly~~D~~~~~I~~~~~~----g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~ 111 (316)
T 1ijq_A 36 DTEVASNRIYWSDLSQRMICSTQLD----RAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR 111 (316)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEC------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE
T ss_pred EEEeCCCEEEEEECCCCcEEEEECC----CCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCce
Confidence 455567899999876 88888888 7 555667767789999999999999999999 68999999999999
Q ss_pred EEEEeCCCcccceEEEeCCCCeEEEEeCCC-CcEEEEEccCCCeEEEec
Q psy4900 434 MSIVSEAAYKASGVALDINAKRLFWCDNLL-DYIETVDYEGKNRFLILR 481 (485)
Q Consensus 434 ~~i~~~~~~~p~glavD~~~~~lYW~D~~~-~~I~~~~~dG~~r~~~~~ 481 (485)
++++...+..|.|||||+..++|||+|++. ++|+++++||+.+++++.
T Consensus 112 ~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~ 160 (316)
T 1ijq_A 112 KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 160 (316)
T ss_dssp EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred EEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEE
Confidence 999988899999999999999999999986 899999999999988765
No 23
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.50 E-value=6.6e-14 Score=134.05 Aligned_cols=115 Identities=19% Similarity=0.275 Sum_probs=101.8
Q ss_pred ccCCCCccCCCCC--CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC-C---CcEEEEEcCCCCcEEEE
Q psy4900 364 KCDSENDCGDGSD--EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD-S---NQILRTNMDGTMAMSIV 437 (485)
Q Consensus 364 ~~~~~~~y~~d~~--~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd-~---~~I~r~~~dG~~~~~i~ 437 (485)
.+.++++||++.. +|.+.+++ |+...+++...+..|.+|++||..++|||++ . ++|+++.+||+.+++++
T Consensus 87 d~~~~~lyv~d~~~~~I~~~~~~----g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~ 162 (267)
T 1npe_A 87 DHLGRTIFWTDSQLDRIEVAKMD----GTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILA 162 (267)
T ss_dssp ETTTTEEEEEETTTTEEEEEETT----SCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEE
T ss_pred EecCCeEEEEECCCCEEEEEEcC----CCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEE
Confidence 3456899999876 88889999 8888788777788999999999999999999 2 58999999999998888
Q ss_pred eCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEccCCCeEEEecC
Q psy4900 438 SEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEGKNRFLILRG 482 (485)
Q Consensus 438 ~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG~~r~~~~~~ 482 (485)
...+.+|+|||||+..++|||+|+..++|.+++++|..+++++.+
T Consensus 163 ~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~ 207 (267)
T 1npe_A 163 QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG 207 (267)
T ss_dssp CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC
T ss_pred ECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC
Confidence 778899999999999999999999999999999999888777654
No 24
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.48 E-value=1.9e-13 Score=130.76 Aligned_cols=115 Identities=22% Similarity=0.281 Sum_probs=101.7
Q ss_pred cccCCCCccCCCCC--CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC--CCcEEEEEcCCCCcEEEEe
Q psy4900 363 WKCDSENDCGDGSD--EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTMAMSIVS 438 (485)
Q Consensus 363 ~~~~~~~~y~~d~~--~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~~~~i~~ 438 (485)
+.+.++++||++.. .|.+.+++ |.....++...+..|.+|++|+..++|||+| .++|.+++++|..+++++.
T Consensus 43 ~d~~~~~ly~~d~~~~~I~~~~~~----g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~ 118 (267)
T 1npe_A 43 FDCVDKVVYWTDISEPSIGRASLH----GGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD 118 (267)
T ss_dssp EETTTTEEEEEETTTTEEEEEESS----SCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred EecCCCEEEEEECCCCEEEEEecC----CCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEE
Confidence 44567899999876 88889998 8877777767788999999999999999999 6899999999999888887
Q ss_pred CCCcccceEEEeCCCCeEEEEeCC--CCcEEEEEccCCCeEEEec
Q psy4900 439 EAAYKASGVALDINAKRLFWCDNL--LDYIETVDYEGKNRFLILR 481 (485)
Q Consensus 439 ~~~~~p~glavD~~~~~lYW~D~~--~~~I~~~~~dG~~r~~~~~ 481 (485)
..+..|.+||||+..++|||+|.. .++|.++++||+.++++..
T Consensus 119 ~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~ 163 (267)
T 1npe_A 119 TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ 163 (267)
T ss_dssp SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEEC
T ss_pred CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEE
Confidence 788899999999999999999987 6899999999999887763
No 25
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=99.27 E-value=5e-12 Score=123.50 Aligned_cols=106 Identities=9% Similarity=0.065 Sum_probs=88.0
Q ss_pred ccCCCCccCCCCC--CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC---CCcEEEEEcCCCCcEEEEe
Q psy4900 364 KCDSENDCGDGSD--EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD---SNQILRTNMDGTMAMSIVS 438 (485)
Q Consensus 364 ~~~~~~~y~~d~~--~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd---~~~I~r~~~dG~~~~~i~~ 438 (485)
.+++++|||++.+ .|.+++++ |+.++.|+.. +..++++|..++|||++ ..+|+|++|||+++++|++
T Consensus 153 ~~~g~~iy~t~~g~~~Iy~~~l~----g~~~~~l~~~----~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~ 224 (302)
T 3s25_A 153 NTSDRYFYYNNPKNGQLYRYDTA----SQSEALFYDC----NCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTE 224 (302)
T ss_dssp EEETTEEEEECTTTCCEEEEETT----TTEEEEEECS----CEEEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSC
T ss_pred eEECCEEEEEeCCCceEEEEECC----CCCEEEEeCC----CccceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeC
Confidence 5678999999874 89999999 9988877643 44566778999999999 4689999999999998876
Q ss_pred CCCcccceEEEeCCCCeEEEE-eCCCCcEEEEEccCCCeEEEecC
Q psy4900 439 EAAYKASGVALDINAKRLFWC-DNLLDYIETVDYEGKNRFLILRG 482 (485)
Q Consensus 439 ~~~~~p~glavD~~~~~lYW~-D~~~~~I~~~~~dG~~r~~~~~~ 482 (485)
..+. .+|+..++|||+ |...+.|+++++||+.|++|..+
T Consensus 225 ~~~~-----~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~ 264 (302)
T 3s25_A 225 ANIE-----HYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELAKG 264 (302)
T ss_dssp SCEE-----EEEEETTEEEEEECSSSCEEEEEETTSCCCEEEEES
T ss_pred CCcc-----eEEECCCEEEEEECCCCcEEEEEECCCCccEEeeCC
Confidence 5552 367789999997 66678999999999999998764
No 26
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}
Probab=99.25 E-value=1.6e-12 Score=137.77 Aligned_cols=99 Identities=34% Similarity=0.652 Sum_probs=79.6
Q ss_pred CCCceecCCcccCCcCCCCCCCcCCCCCCCCCCCCCCCCeecCCCCceecCcceeCCCCCCCCCCcccCCCCCccCCCcc
Q psy4900 22 PHGICIPKDKRCDGYYDCRNRKDEEGCPATTGLSCDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDEEKCNFTACHVGQF 101 (485)
Q Consensus 22 ~~g~ci~~~~~Cd~~~dC~d~sdE~~C~~~~~~~C~~~~f~C~~g~~Ci~~~~~Cd~~~dC~d~sDe~~C~~~~C~~~~f 101 (485)
..+.++...+.||...+|.+.++ .| |...+|+|.+|. ||+..|+|||+.||.|++||.+|.. |.+++|
T Consensus 179 ~~~~~~~~~h~~DagV~C~~~~~--~c-------~~~~~~~C~~~~-ci~~~~~Cdg~~dC~d~sDE~~C~~--c~~~~~ 246 (565)
T 2xrc_A 179 TFTKRRTMGYQDFADVVCYTQKA--DS-------PMDDFFQCVNGK-YISQMKACDGINDCGDQSDELCCKA--CQGKGF 246 (565)
T ss_dssp EEECCCCCSSCCCCEEEBCCC------------------CBCTTSC-BCCTTSTTSSSCCSSSSSSSSSBSS--CSSSCE
T ss_pred ccCcccccccccCCceecccccc--CC-------CCcCeeECCCCC-ccCHHHcCCCcccCCCCcccccccc--cCCCce
Confidence 34445666678888888876543 12 234569999997 9999999999999999999999954 999999
Q ss_pred cCCCCcccCccccCCCCCCCCCCCCCCCCCC
Q psy4900 102 KCANSLCIPVSYHCDGYRDCIDGSDETNCTS 132 (485)
Q Consensus 102 ~C~~~~Ci~~~~~Cdg~~dC~dgsDe~~C~~ 132 (485)
+|.++.||+..++|||..||.||+||.+|..
T Consensus 247 ~C~~~~C~~~~~~cdG~~dC~~gsDE~~C~~ 277 (565)
T 2xrc_A 247 HCKSGVCIPSQYQCNGEVDCITGEDEVGCAG 277 (565)
T ss_dssp EETTTEEECGGGTTSSSCCSSSCTTSSSCC-
T ss_pred ecCCCcccCccccCCCcccCCCCccccCcCC
Confidence 9999999999999999999999999998863
No 27
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}
Probab=99.18 E-value=1e-11 Score=131.58 Aligned_cols=100 Identities=29% Similarity=0.524 Sum_probs=81.1
Q ss_pred CeecCCCCceecCcceeCCCCCCCCCCcccCCCCCccCCCcccCCCCcccCccccCCCCCCCCCCCCCCCCCCCCcCCCc
Q psy4900 60 QFRCANGQKCIDAKLKCNYHNDCGDNSDEEKCNFTACHVGQFKCANSLCIPVSYHCDGYRDCIDGSDETNCTSIACPNNK 139 (485)
Q Consensus 60 ~f~C~~g~~Ci~~~~~Cd~~~dC~d~sDe~~C~~~~C~~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDe~~C~~~~c~~~~ 139 (485)
.+.|..+. ++...+.||...+|.+.+++ .|...+|+|.++.||+..|+|||..||.|++||.+|.. |+..+
T Consensus 175 l~~C~~~~-~~~~~h~~DagV~C~~~~~~------c~~~~~~~C~~~~ci~~~~~Cdg~~dC~d~sDE~~C~~--c~~~~ 245 (565)
T 2xrc_A 175 LAECTFTK-RRTMGYQDFADVVCYTQKAD------SPMDDFFQCVNGKYISQMKACDGINDCGDQSDELCCKA--CQGKG 245 (565)
T ss_dssp GGGSEEEC-CCCCSSCCCCEEEBCCC---------------CBCTTSCBCCTTSTTSSSCCSSSSSSSSSBSS--CSSSC
T ss_pred hhhcccCc-ccccccccCCceeccccccC------CCCcCeeECCCCCccCHHHcCCCcccCCCCcccccccc--cCCCc
Confidence 35676554 67777888888889877643 13345699999999999999999999999999999975 77789
Q ss_pred eecCCCCCCCCCcccCCCcccCCCCCCCCCccccC
Q psy4900 140 FLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEET 174 (485)
Q Consensus 140 ~~C~~g~~~~~~~Ci~~~~~Cdg~~dC~d~sDe~~ 174 (485)
|+|.++ .||+..++|||..||.+++||.+
T Consensus 246 ~~C~~~------~C~~~~~~cdG~~dC~~gsDE~~ 274 (565)
T 2xrc_A 246 FHCKSG------VCIPSQYQCNGEVDCITGEDEVG 274 (565)
T ss_dssp EEETTT------EEECGGGTTSSSCCSSSCTTSSS
T ss_pred eecCCC------cccCccccCCCcccCCCCccccC
Confidence 999998 89999999999999999999965
No 28
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=99.17 E-value=1.2e-13 Score=125.05 Aligned_cols=120 Identities=23% Similarity=0.370 Sum_probs=88.8
Q ss_pred cCCcCCCCCCCcCCCCCCCCCCCCCCCCeec--CCCCceecCcceeCCCCCCCCCCcccCCCCCccCCCcccCCCCcccC
Q psy4900 33 CDGYYDCRNRKDEEGCPATTGLSCDLDQFRC--ANGQKCIDAKLKCNYHNDCGDNSDEEKCNFTACHVGQFKCANSLCIP 110 (485)
Q Consensus 33 Cd~~~dC~d~sdE~~C~~~~~~~C~~~~f~C--~~g~~Ci~~~~~Cd~~~dC~d~sDe~~C~~~~C~~~~f~C~~~~Ci~ 110 (485)
+....+|.+++||.+|. .|++++|+| .+|. |||..|+|||..||.|+|||.+|....|.+.+|+|. +
T Consensus 37 ~~~~~~c~d~sDE~~C~-----~C~~~~F~C~~~~g~-CIp~~~~CDG~~DC~DgSDE~~C~~~~C~~~~F~c~-----~ 105 (215)
T 2gtl_O 37 IRKAGSLRHRVEELEDP-----SCDEHEHQCGGDDPQ-CISKLFVCDGHNDCRNGEDEKDCTLPTKAGDKFIGD-----V 105 (215)
T ss_dssp HHHHHHHHHHHHHHSCC-----SSCTTEEECCSSSCC-EEEGGGTTSSSCCSSSCHHHHCCCCSSCTTCEEEEE-----E
T ss_pred hcccccCCcchhhccCC-----CCCCcceeeCCCCCc-CccccccCCCCCcCCCcccccCCCCCCcCCCceeee-----E
Confidence 33456899999999996 499999999 6777 999999999999999999999999889999999882 3
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCc-CCCceecCCCCCCCCCcccC-----------CCcccCCCCCCCCCccccC
Q psy4900 111 VSYHCDGYRDCIDGSDETNCTSIAC-PNNKFLCPMGAAGGKPKCIP-----------KAQVCDGRKDCEDNADEET 174 (485)
Q Consensus 111 ~~~~Cdg~~dC~dgsDe~~C~~~~c-~~~~~~C~~g~~~~~~~Ci~-----------~~~~Cdg~~dC~d~sDe~~ 174 (485)
..+ .|.+.+++..|...+. ...+|.|.++. -..||. .+|.|||+.+ ++++|..
T Consensus 106 ~~~------~C~~~~~~~~c~~~~s~~~~~~fc~~~~---v~~~i~l~~~~~g~~~~~s~~cDG~yd--~gs~el~ 170 (215)
T 2gtl_O 106 CFD------HCTKRRPEHMTLAFESSSIAAFFTPIAD---LHVHIEIESETDEDESEVSMPADGEYS--FADHRLT 170 (215)
T ss_dssp EEE------SSCSSCCSEEEEEEEEEEECTTCTTEEE---EEEEEEEECCCSSCCCEEEEEEEEEEE--TTTTEEE
T ss_pred CCC------cccCCCCCCceeeeeccccccccCCCCc---cCeEEEEEeecCCCccccceeecCEec--CCcceee
Confidence 222 3666667766643221 12356675430 003555 6789999998 5778754
No 29
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=99.15 E-value=4.5e-11 Score=116.73 Aligned_cols=104 Identities=10% Similarity=0.070 Sum_probs=87.5
Q ss_pred ccCCCCccCCCCC---CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEe-C--CCcEEEEEcCCCCcEEEE
Q psy4900 364 KCDSENDCGDGSD---EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVA-D--SNQILRTNMDGTMAMSIV 437 (485)
Q Consensus 364 ~~~~~~~y~~d~~---~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywt-d--~~~I~r~~~dG~~~~~i~ 437 (485)
.|+++.|||++.. .|.+++++ |+.+.+|....+ ..++|..++|||+ + ...|+++++||+.|++|.
T Consensus 192 ~P~g~~iy~t~~~~~~~I~~~~ld----G~~~~~Lt~~~~-----~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~ 262 (302)
T 3s25_A 192 VLDDTNVYYMDVNRDNAIVHVNIN----NPNPVVLTEANI-----EHYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELA 262 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEECSS----SCCCEECSCSCE-----EEEEEETTEEEEEECSSSCEEEEEETTSCCCEEEE
T ss_pred eecCCEEEEEEcCCCcEEEEEECC----CCCeEEEeCCCc-----ceEEECCCEEEEEECCCCcEEEEEECCCCccEEee
Confidence 3788999998765 79999999 999888765444 3478889999998 4 589999999999999998
Q ss_pred eCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEccCCCeEEEec
Q psy4900 438 SEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEGKNRFLILR 481 (485)
Q Consensus 438 ~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG~~r~~~~~ 481 (485)
... ..+|.+..++|||+|+..+.|.++++||+++.+|+.
T Consensus 263 ~~~-----~~~i~i~~d~Iy~td~~~~~i~~~~~dGs~~~~l~~ 301 (302)
T 3s25_A 263 KGE-----FCNINVTSQYVYFTDFVSNKEYCTSTQNPDTIKALQ 301 (302)
T ss_dssp ESC-----EEEEEECSSEEEEEETTTCCEEEEESSSCCSCEECC
T ss_pred CCc-----cceEEEeCCEEEEEECCCCeEEEEECCCCCceEecC
Confidence 643 335667899999999999999999999999988764
No 30
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=99.08 E-value=5.1e-12 Score=114.32 Aligned_cols=117 Identities=21% Similarity=0.307 Sum_probs=89.9
Q ss_pred CCCCCCcEEecCCCCceecCCcccCCcCCCCCCCcCCCCCCCCCCCCCCCCeecCCCCceecCcceeCCCCCCCCCCccc
Q psy4900 10 RKCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCPATTGLSCDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDEE 89 (485)
Q Consensus 10 ~~C~~~~f~C~c~~g~ci~~~~~Cd~~~dC~d~sdE~~C~~~~~~~C~~~~f~C~~g~~Ci~~~~~Cd~~~dC~d~sDe~ 89 (485)
..|.+++|+|.-.+|.||+..|+|||.+||.|||||.+|+. .+|.+.+|+|. + ....|.+.+++.
T Consensus 53 ~~C~~~~F~C~~~~g~CIp~~~~CDG~~DC~DgSDE~~C~~---~~C~~~~F~c~------~------~~~~C~~~~~~~ 117 (215)
T 2gtl_O 53 PSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCTL---PTKAGDKFIGD------V------CFDHCTKRRPEH 117 (215)
T ss_dssp CSSCTTEEECCSSSCCEEEGGGTTSSSCCSSSCHHHHCCCC---SSCTTCEEEEE------E------EEESSCSSCCSE
T ss_pred CCCCCcceeeCCCCCcCccccccCCCCCcCCCcccccCCCC---CCcCCCceeee------E------CCCcccCCCCCC
Confidence 46999999993137999999999999999999999999986 68999999983 2 123477777777
Q ss_pred CCCCCccC--CCcccCCCC---cccC-----------ccccCCCCCCCCCCCCCCCCCCCCcCCCceecCC
Q psy4900 90 KCNFTACH--VGQFKCANS---LCIP-----------VSYHCDGYRDCIDGSDETNCTSIACPNNKFLCPM 144 (485)
Q Consensus 90 ~C~~~~C~--~~~f~C~~~---~Ci~-----------~~~~Cdg~~dC~dgsDe~~C~~~~c~~~~~~C~~ 144 (485)
.|. ..|. ..+|.|.++ .||. .+|.|||+.+ ++++|..|...-+...+|+|..
T Consensus 118 ~c~-~~~s~~~~~~fc~~~~v~~~i~l~~~~~g~~~~~s~~cDG~yd--~gs~el~~~pp~~~~l~f~C~~ 185 (215)
T 2gtl_O 118 MTL-AFESSSIAAFFTPIADLHVHIEIESETDEDESEVSMPADGEYS--FADHRLTIHPPEEDGLGLVGEF 185 (215)
T ss_dssp EEE-EEEEEEECTTCTTEEEEEEEEEEECCCSSCCCEEEEEEEEEEE--TTTTEEEECCSSTTTEEEEEEE
T ss_pred cee-eeeccccccccCCCCccCeEEEEEeecCCCccccceeecCEec--CCcceeeecCCCCCCceeEEEe
Confidence 664 3454 367888765 4777 7889999998 5889988865545555777764
No 31
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}
Probab=98.99 E-value=1.2e-10 Score=89.14 Aligned_cols=65 Identities=25% Similarity=0.522 Sum_probs=53.5
Q ss_pred CCCCCccCCCcccCC-CCcccCccccCCCCCCCCCCCCCC---CCC-CCCcCCCceecCC--CCCCCCCcccCCCccc
Q psy4900 90 KCNFTACHVGQFKCA-NSLCIPVSYHCDGYRDCIDGSDET---NCT-SIACPNNKFLCPM--GAAGGKPKCIPKAQVC 160 (485)
Q Consensus 90 ~C~~~~C~~~~f~C~-~~~Ci~~~~~Cdg~~dC~dgsDe~---~C~-~~~c~~~~~~C~~--g~~~~~~~Ci~~~~~C 160 (485)
+|....|.+++|+|. ++.|||..|+|||+.||.|||||. .|. ...|...+|+|.+ + .||+.....
T Consensus 3 ~C~~~~C~~~~f~C~~~g~CIp~~~~CDg~~DC~DgsDE~~~~~C~~~~~C~~~~f~c~~~~~------~ci~~~~~g 74 (80)
T 2kny_A 3 KLEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGSGSTEELR------VRLASHLRK 74 (80)
T ss_dssp SCSSCCCSSSEEECTTSSCEEEHHHHTTSSCCSSSSTTTSGGGTCSSSSTTTTCSSCHHHHHH------HHTTTTTTT
T ss_pred CCCCCCCCCCceecCCCCeEcChhhcCCCCCCCCCCCccccccCCCCCcccCcccchhhhHHH------HHHHHHHHH
Confidence 466678999999998 689999999999999999999998 465 3567777899987 5 788876544
No 32
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Probab=98.96 E-value=3.8e-10 Score=73.04 Aligned_cols=37 Identities=46% Similarity=1.000 Sum_probs=34.5
Q ss_pred CCCCCcEEecCCCCceecCCcccCCcCCCCCCCcCCCCC
Q psy4900 11 KCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCP 49 (485)
Q Consensus 11 ~C~~~~f~C~c~~g~ci~~~~~Cd~~~dC~d~sdE~~C~ 49 (485)
.|.+++|+| .+|.||+..|+|||+.||.|||||.+|+
T Consensus 1 ~C~~~~f~C--~~g~Ci~~~~~CDg~~DC~DgsDE~~C~ 37 (37)
T 1ajj_A 1 PCSAFEFHC--LSGECIHSSWRCDGGPDCKDKSDEENCA 37 (37)
T ss_dssp CCCTTCEEC--TTSCEECGGGTTSSSCCSTTCGGGTTCC
T ss_pred CCCCCceEc--CCCCeechhhccCCCCCCCCCccccCCC
Confidence 488899999 7899999999999999999999999884
No 33
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}
Probab=98.95 E-value=1.8e-10 Score=88.20 Aligned_cols=66 Identities=17% Similarity=0.366 Sum_probs=55.0
Q ss_pred CCCCCCCCCCCCCCeecC-CCCceecCcceeCCCCCCCCCCccc---CCC-CCccCCCcccCCC--CcccCccccCC
Q psy4900 47 GCPATTGLSCDLDQFRCA-NGQKCIDAKLKCNYHNDCGDNSDEE---KCN-FTACHVGQFKCAN--SLCIPVSYHCD 116 (485)
Q Consensus 47 ~C~~~~~~~C~~~~f~C~-~g~~Ci~~~~~Cd~~~dC~d~sDe~---~C~-~~~C~~~~f~C~~--~~Ci~~~~~Cd 116 (485)
+|+. ..|.+++|+|. +|. ||+..|+|||+.||.|||||. .|. ..+|.+.+|+|.+ +.||+......
T Consensus 3 ~C~~---~~C~~~~f~C~~~g~-CIp~~~~CDg~~DC~DgsDE~~~~~C~~~~~C~~~~f~c~~~~~~ci~~~~~gL 75 (80)
T 2kny_A 3 KLEG---KTCGPSSFSCPGTHV-CVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGSGSTEELRVRLASHLRKL 75 (80)
T ss_dssp SCSS---CCCSSSEEECTTSSC-EEEHHHHTTSSCCSSSSTTTSGGGTCSSSSTTTTCSSCHHHHHHHHTTTTTTTT
T ss_pred CCCC---CCCCCCceecCCCCe-EcChhhcCCCCCCCCCCCccccccCCCCCcccCcccchhhhHHHHHHHHHHHHH
Confidence 4654 67999999998 465 999999999999999999998 475 4689999999988 68888765543
No 34
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Probab=98.95 E-value=2.9e-10 Score=73.55 Aligned_cols=35 Identities=49% Similarity=1.008 Sum_probs=21.8
Q ss_pred cCCCcccCCCCcccCccccCCCCCCCCCCCCCCCC
Q psy4900 96 CHVGQFKCANSLCIPVSYHCDGYRDCIDGSDETNC 130 (485)
Q Consensus 96 C~~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDe~~C 130 (485)
|.+.+|+|.+++||+..|+|||+.||.|||||.+|
T Consensus 2 C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C 36 (37)
T 1ajj_A 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36 (37)
T ss_dssp CCTTCEECTTSCEECGGGTTSSSCCSTTCGGGTTC
T ss_pred CCCCceEcCCCCeechhhccCCCCCCCCCccccCC
Confidence 45556666666666666666666666666666554
No 35
>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=98.90 E-value=1e-09 Score=73.13 Aligned_cols=39 Identities=41% Similarity=0.999 Sum_probs=35.5
Q ss_pred CCCCCCcEEecCCCCceecCCcccCCcCCCCCCCcCCCCC
Q psy4900 10 RKCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCP 49 (485)
Q Consensus 10 ~~C~~~~f~C~c~~g~ci~~~~~Cd~~~dC~d~sdE~~C~ 49 (485)
..|.+++|+|. .+|.||+..|+|||+.||.|||||.+|.
T Consensus 2 ~~C~~~~F~C~-~~g~CI~~~~~CDg~~DC~DgSDE~~C~ 40 (42)
T 1cr8_A 2 GGCHTDEFQCR-LDGLCIPLRWRCDGDTDCMDSSDEKSCE 40 (42)
T ss_dssp CCSSTTCEECT-TTCCEECGGGSSSSSCCSSSSTTTTTCC
T ss_pred CCCCCCceEeC-CCCeEcChhhcCCCCcCCCCCCcccCCC
Confidence 56999999993 3699999999999999999999999986
No 36
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}
Probab=98.89 E-value=1e-09 Score=73.51 Aligned_cols=39 Identities=41% Similarity=0.871 Sum_probs=35.7
Q ss_pred CCCCCCCcEEecCCC-CceecCCcccCCcCCCCCCCcCCCCC
Q psy4900 9 FRKCSPGDFECDPPH-GICIPKDKRCDGYYDCRNRKDEEGCP 49 (485)
Q Consensus 9 ~~~C~~~~f~C~c~~-g~ci~~~~~Cd~~~dC~d~sdE~~C~ 49 (485)
...|.+++|+| .+ |.||+..|+|||+.||.|+|||.+|.
T Consensus 4 ~~~C~~~~f~C--~~~g~CI~~~~~CDg~~DC~DgSDE~~C~ 43 (43)
T 2jm4_A 4 DVKCSLGYFPC--GNITKCLPQLLHCNGVDDCGNQADEDNCG 43 (43)
T ss_dssp SCSCCTTEEEC--SSSSCEEEGGGTTSSCCCSSSCCTTSSCC
T ss_pred CCCCCCCeeEC--CCCCeEcCHhhccCCCCCCCCCcccCCCC
Confidence 46799999999 66 99999999999999999999999884
No 37
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*
Probab=98.89 E-value=1.1e-09 Score=71.70 Aligned_cols=36 Identities=47% Similarity=1.148 Sum_probs=29.8
Q ss_pred cCCCcccCCC--CcccCccccCCCCCCCCCCCCCCCCC
Q psy4900 96 CHVGQFKCAN--SLCIPVSYHCDGYRDCIDGSDETNCT 131 (485)
Q Consensus 96 C~~~~f~C~~--~~Ci~~~~~Cdg~~dC~dgsDe~~C~ 131 (485)
|.+++|+|.+ ++|||.+|+|||+.||.|||||.+|.
T Consensus 1 C~~~~f~C~~~~g~Cip~~~~CDg~~DC~dgsDE~~C~ 38 (39)
T 3dpr_E 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG 38 (39)
T ss_dssp CCTTTCCCSSSSSCCCCTTSSSSSSCCSTTTTTSTTCC
T ss_pred CCCCceecCCCCCCEeCccccCCCcccCcCCcccccCC
Confidence 5677888886 78888888888888888888888774
No 38
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}
Probab=98.89 E-value=6.3e-10 Score=87.43 Aligned_cols=69 Identities=28% Similarity=0.732 Sum_probs=59.3
Q ss_pred cccccCCCCCCeeeCCCCceeeCCCCCCCCcchhhhccccccccccccceeheeheeeeeeecccCCCCCCCCCCCCCCC
Q psy4900 185 EFTCQASPTGGVCQCPEGQKVANDSRTCLLYMKNNLKQAVRSSTVSSHVKLVLLEVYVNVLKVRKLPTTAEPQSPNPCGS 264 (485)
Q Consensus 185 ~~~C~n~~~~~~C~C~~G~~l~~~~~~C~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~C~~ 264 (485)
...|.+++++|+|.|++||.+..+++.|.|+++ |.
T Consensus 15 ~~~C~n~~g~y~C~C~~G~~~~~~g~~C~dide--------------------------------------------C~- 49 (87)
T 1z6c_A 15 TAVCKNIPGDFECECPEGYRYNLKSKSCEDIDE--------------------------------------------CS- 49 (87)
T ss_dssp TSSCCCBTTBCCCSSSTTCEEETTTTEEECCCH--------------------------------------------HH-
T ss_pred CCEeECCCCCEEEECCCCceECCCCCcCCCcCe--------------------------------------------eC-
Confidence 467999999999999999999888889999888 64
Q ss_pred CCCCccccccccccCCCCCCccccC--CCCccccCCCCCCCC
Q psy4900 265 NNGGCEHMCIITRASGNALGYKCAC--DIGYRLSVNGNNCNQ 304 (485)
Q Consensus 265 ~~g~C~~~C~n~~~~~~~g~~~C~C--~~Gy~l~~d~~~C~~ 304 (485)
.+.|.+.|+|++ ++|+|.| ..||.+..+++.|.+
T Consensus 50 -~~~C~~~C~n~~-----g~y~C~C~g~~G~~~~~~~~~C~d 85 (87)
T 1z6c_A 50 -ENMCAQLCVNYP-----GGYTCYCDGKKGFKLAQDQKSCEV 85 (87)
T ss_dssp -HSCCSSEECCCS-----SSCCEECCSSSCCBCCTTSSSCBC
T ss_pred -CCCCCCEEEccC-----CCEEEECCCCcCCcccCCCCcceE
Confidence 346778999999 9999999 689998888887754
No 39
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}
Probab=98.88 E-value=8.6e-10 Score=73.86 Aligned_cols=36 Identities=44% Similarity=1.110 Sum_probs=25.0
Q ss_pred ccCCCcccCCC-CcccCccccCCCCCCCCCCCCCCCC
Q psy4900 95 ACHVGQFKCAN-SLCIPVSYHCDGYRDCIDGSDETNC 130 (485)
Q Consensus 95 ~C~~~~f~C~~-~~Ci~~~~~Cdg~~dC~dgsDe~~C 130 (485)
.|.+++|+|.+ ++||+..|+|||+.||.|||||.+|
T Consensus 6 ~C~~~~f~C~~~g~CI~~~~~CDg~~DC~DgSDE~~C 42 (43)
T 2jm4_A 6 KCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42 (43)
T ss_dssp SCCTTEEECSSSSCEEEGGGTTSSCCCSSSCCTTSSC
T ss_pred CCCCCeeECCCCCeEcCHhhccCCCCCCCCCcccCCC
Confidence 46666677766 6777777777777777777777665
No 40
>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=98.88 E-value=1.2e-09 Score=72.80 Aligned_cols=37 Identities=49% Similarity=1.275 Sum_probs=26.7
Q ss_pred ccCCCcccCC-CCcccCccccCCCCCCCCCCCCCCCCC
Q psy4900 95 ACHVGQFKCA-NSLCIPVSYHCDGYRDCIDGSDETNCT 131 (485)
Q Consensus 95 ~C~~~~f~C~-~~~Ci~~~~~Cdg~~dC~dgsDe~~C~ 131 (485)
.|.+++|+|. +++||+..|+|||+.||.|||||.+|.
T Consensus 3 ~C~~~~F~C~~~g~CI~~~~~CDg~~DC~DgSDE~~C~ 40 (42)
T 1cr8_A 3 GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCE 40 (42)
T ss_dssp CSSTTCEECTTTCCEECGGGSSSSSCCSSSSTTTTTCC
T ss_pred CCCCCceEeCCCCeEcChhhcCCCCcCCCCCCcccCCC
Confidence 4666777776 367777777777777777777777664
No 41
>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}
Probab=98.88 E-value=7.1e-10 Score=74.69 Aligned_cols=37 Identities=46% Similarity=1.070 Sum_probs=26.0
Q ss_pred ccCCCcccCCCCcccCccccCCCCCCCCCCCCCCCCC
Q psy4900 95 ACHVGQFKCANSLCIPVSYHCDGYRDCIDGSDETNCT 131 (485)
Q Consensus 95 ~C~~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDe~~C~ 131 (485)
.|.+++|+|.+++||+..|+|||+.||.|||||.+|.
T Consensus 7 ~C~~~~f~C~~g~CI~~~~~CDg~~DC~DgSDE~~C~ 43 (44)
T 3a7q_B 7 ECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDCP 43 (44)
T ss_dssp -CCTTEEECTTSCEEEGGGTTSSSCCSSSSTTTSCC-
T ss_pred CCCCCceEcCCCCEeChhhccCCCCCCCCCccccCCC
Confidence 4666777777777777777777777777777777663
No 42
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1
Probab=98.87 E-value=5.7e-10 Score=76.38 Aligned_cols=41 Identities=51% Similarity=1.187 Sum_probs=34.7
Q ss_pred CCCCCCCcEEecCC---CCceecCCcccCCcCCCCCCCcCCCCC
Q psy4900 9 FRKCSPGDFECDPP---HGICIPKDKRCDGYYDCRNRKDEEGCP 49 (485)
Q Consensus 9 ~~~C~~~~f~C~c~---~g~ci~~~~~Cd~~~dC~d~sdE~~C~ 49 (485)
...|.+++|+|.-. +|.||+..|+|||+.||.|||||.+|+
T Consensus 4 ~~~C~~~~F~C~~~~~~~g~CIp~~~~CDG~~DC~DgSDE~~C~ 47 (47)
T 1k7b_A 4 FGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCG 47 (47)
T ss_dssp --CCSTTEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTGGGC
T ss_pred CCCCCCCceEcCCCCCCCCcCCCccccCCCcCCCCCCcccCCCC
Confidence 46799999999310 799999999999999999999999874
No 43
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=98.86 E-value=1.5e-09 Score=73.19 Aligned_cols=39 Identities=36% Similarity=0.845 Sum_probs=36.0
Q ss_pred CCCCCCCcEEecCCCCceecCCcccCCcCCCCCCCcCCCCC
Q psy4900 9 FRKCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCP 49 (485)
Q Consensus 9 ~~~C~~~~f~C~c~~g~ci~~~~~Cd~~~dC~d~sdE~~C~ 49 (485)
.+.|.+++|+| .+|.||+..|+|||+.||.|+|||..|.
T Consensus 3 ~~~C~~~~F~C--~~g~CI~~~~~CDG~~DC~DgSDE~~c~ 41 (45)
T 1d2l_A 3 PPQCQPGEFAC--ANSRCIQERWKCDGDNDCLDNSDEAPAL 41 (45)
T ss_dssp CCBTTBTCEEE--TTTEEECGGGTTTSSCTTTTCSTTSTTT
T ss_pred CCcCCCCceEc--CCCCeEehhhccCCCCCCCCCCCCCCCc
Confidence 36799999999 8899999999999999999999999874
No 44
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=98.86 E-value=8.6e-10 Score=74.37 Aligned_cols=36 Identities=50% Similarity=1.076 Sum_probs=25.6
Q ss_pred ccCCCcccCCCCcccCccccCCCCCCCCCCCCCCCC
Q psy4900 95 ACHVGQFKCANSLCIPVSYHCDGYRDCIDGSDETNC 130 (485)
Q Consensus 95 ~C~~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDe~~C 130 (485)
.|.+++|+|.+++||+..|+|||+.||.|||||..|
T Consensus 5 ~C~~~~F~C~~g~CI~~~~~CDG~~DC~DgSDE~~c 40 (45)
T 1d2l_A 5 QCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPA 40 (45)
T ss_dssp BTTBTCEEETTTEEECGGGTTTSSCTTTTCSTTSTT
T ss_pred cCCCCceEcCCCCeEehhhccCCCCCCCCCCCCCCC
Confidence 466667777777777777777777777777777665
No 45
>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}
Probab=98.86 E-value=1.2e-09 Score=73.61 Aligned_cols=39 Identities=38% Similarity=0.934 Sum_probs=33.9
Q ss_pred CCCCCCCcEEecCCCCceecCCcccCCcCCCCCCCcCCCCC
Q psy4900 9 FRKCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCP 49 (485)
Q Consensus 9 ~~~C~~~~f~C~c~~g~ci~~~~~Cd~~~dC~d~sdE~~C~ 49 (485)
...|.+++|+| .+|.||+..|+|||+.||.|+|||.+|+
T Consensus 5 ~~~C~~~~f~C--~~g~CI~~~~~CDg~~DC~DgSDE~~C~ 43 (44)
T 3a7q_B 5 AKECEKDQFQC--RNERCIPSVWRCDEDDDCLDHSDEDDCP 43 (44)
T ss_dssp ---CCTTEEEC--TTSCEEEGGGTTSSSCCSSSSTTTSCC-
T ss_pred CCCCCCCceEc--CCCCEeChhhccCCCCCCCCCccccCCC
Confidence 35799999999 7899999999999999999999999885
No 46
>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}
Probab=98.85 E-value=8.6e-10 Score=76.25 Aligned_cols=41 Identities=29% Similarity=0.670 Sum_probs=37.5
Q ss_pred CCCCCCCCcEEecCCCCceecCCcccCCcCCCCCCCcCCCCCC
Q psy4900 8 NFRKCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCPA 50 (485)
Q Consensus 8 ~~~~C~~~~f~C~c~~g~ci~~~~~Cd~~~dC~d~sdE~~C~~ 50 (485)
+...|.+++|+| .+|.||+..|+|||..||.|||||.+|..
T Consensus 3 ~p~~C~~~~F~C--~nG~CIp~~~~CDG~~DC~DgSDE~~~~~ 43 (52)
T 2m0p_A 3 APASCLDTQYTC--DNHQCISKNWVCDTDNDCGDGSDEKNCNS 43 (52)
T ss_dssp CCCSSCSSEEEC--TTCCEEETTSTTSSSCSSSSCHHHHSCCC
T ss_pred CCCCCCCCceEC--CCCCEEecCccCCCCCCCCCCCccccchh
Confidence 347899999999 89999999999999999999999998864
No 47
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}
Probab=98.85 E-value=2.3e-09 Score=74.05 Aligned_cols=40 Identities=33% Similarity=0.769 Sum_probs=36.1
Q ss_pred CCCCCCCcEEecCCCCceecCCcccCCcCCCCCCCcCCCCC
Q psy4900 9 FRKCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCP 49 (485)
Q Consensus 9 ~~~C~~~~f~C~c~~g~ci~~~~~Cd~~~dC~d~sdE~~C~ 49 (485)
...|.+++|+|. .+|.||+..|+|||+.||.|||||.+|.
T Consensus 4 ~~~C~~~~F~C~-~~g~CI~~~~~CDG~~DC~DgSDE~~C~ 43 (50)
T 2knx_A 4 GKTCGPSSFSCP-GTHVCVPERWLCDGDKDCADGADESIAA 43 (50)
T ss_dssp TCTTCTTEEEET-TTTEEEETTTTTSSSCCSTTCGGGSGGG
T ss_pred CCCCCCCcEEcC-CCCeEcChhhcCCCCCCCCCCCcccccc
Confidence 467999999993 3899999999999999999999999875
No 48
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1
Probab=98.84 E-value=9.6e-10 Score=75.25 Aligned_cols=37 Identities=46% Similarity=1.067 Sum_probs=27.8
Q ss_pred CccCCCcccCC-----CCcccCccccCCCCCCCCCCCCCCCC
Q psy4900 94 TACHVGQFKCA-----NSLCIPVSYHCDGYRDCIDGSDETNC 130 (485)
Q Consensus 94 ~~C~~~~f~C~-----~~~Ci~~~~~Cdg~~dC~dgsDe~~C 130 (485)
..|.+++|+|. +++|||.+|+|||+.||.|||||.+|
T Consensus 5 ~~C~~~~F~C~~~~~~~g~CIp~~~~CDG~~DC~DgSDE~~C 46 (47)
T 1k7b_A 5 GSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46 (47)
T ss_dssp -CCSTTEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTGGG
T ss_pred CCCCCCceEcCCCCCCCCcCCCccccCCCcCCCCCCcccCCC
Confidence 35777778887 67788888888888888888888765
No 49
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A
Probab=98.84 E-value=4.7e-10 Score=91.66 Aligned_cols=70 Identities=29% Similarity=0.830 Sum_probs=27.1
Q ss_pred CccccccCCCCCCeeeCCCCceeeCCCCCCCCcchhhhccccccccccccceeheeheeeeeeecccCCCCCCCCCCCCC
Q psy4900 183 NCEFTCQASPTGGVCQCPEGQKVANDSRTCLLYMKNNLKQAVRSSTVSSHVKLVLLEVYVNVLKVRKLPTTAEPQSPNPC 262 (485)
Q Consensus 183 ~C~~~C~n~~~~~~C~C~~G~~l~~~~~~C~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~C 262 (485)
.|.+.|.+++++|+|.|++||.+. +++.|.|++| |
T Consensus 38 ~C~~~C~n~~g~y~C~C~~Gy~g~-~g~~C~dide--------------------------------------------C 72 (107)
T 2w2n_E 38 GCSYVCNDLKIGYECLCPDGFQLV-AQRRCEDIDE--------------------------------------------C 72 (107)
T ss_dssp GCSSEEECCSBSCEEECCTTCEEE-TTTEEEC------------------------------------------------
T ss_pred CCCCEeEeCCCCeEEECCCCcccc-CCCccccccc--------------------------------------------c
Confidence 467789999999999999999884 6788998888 7
Q ss_pred CCCCCCccccccccccCCCCCCccccCCCCccccCCCCCCC
Q psy4900 263 GSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCN 303 (485)
Q Consensus 263 ~~~~g~C~~~C~n~~~~~~~g~~~C~C~~Gy~l~~d~~~C~ 303 (485)
. ..+.|.+.|+|++ ++|+|.|+.||.+..++++|+
T Consensus 73 ~-~~~~C~~~C~n~~-----gsy~C~C~~Gy~~~~d~~~C~ 107 (107)
T 2w2n_E 73 Q-DPDTCSQLCVNLE-----GGYKCQCEEGFQLDPHTKACK 107 (107)
T ss_dssp -----------------------------------------
T ss_pred C-CCCCcCCeeecCC-----CCEEEECCCCceECCCCCccC
Confidence 6 3457888999999 999999999999988888774
No 50
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Probab=98.84 E-value=5.6e-10 Score=87.53 Aligned_cols=68 Identities=28% Similarity=0.576 Sum_probs=56.2
Q ss_pred cccCCCCCCeeeCCCCceee-CCCCCCCCcchhhhccccccccccccceeheeheeeeeeecccCCCCCCCCCCCCCCCC
Q psy4900 187 TCQASPTGGVCQCPEGQKVA-NDSRTCLLYMKNNLKQAVRSSTVSSHVKLVLLEVYVNVLKVRKLPTTAEPQSPNPCGSN 265 (485)
Q Consensus 187 ~C~n~~~~~~C~C~~G~~l~-~~~~~C~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~C~~~ 265 (485)
.|.|++++|+|.|++||.+. .+++.|.|++| |...
T Consensus 17 ~C~n~~g~y~C~C~~Gy~~~~~~g~~C~dide--------------------------------------------C~~~ 52 (86)
T 1lmj_A 17 QCVNTPGDFECKCDEGYESGFMMMKNCMDIDE--------------------------------------------CQRD 52 (86)
T ss_dssp CEEEETTEEEECCCSSEEECTTTSSSEEECCH--------------------------------------------HHHC
T ss_pred EEECCCCCEEeeCCCCcCccCCCCCccCCccc--------------------------------------------ccCC
Confidence 79999999999999999874 24788999888 5433
Q ss_pred CCCcc-ccccccccCCCCCCccccCCCCccccCCCCCCC
Q psy4900 266 NGGCE-HMCIITRASGNALGYKCACDIGYRLSVNGNNCN 303 (485)
Q Consensus 266 ~g~C~-~~C~n~~~~~~~g~~~C~C~~Gy~l~~d~~~C~ 303 (485)
...|. +.|+|++ |+|+|.|+.||.+..++++|.
T Consensus 53 ~~~C~~~~C~n~~-----g~y~C~C~~G~~~~~~~~~Ci 86 (86)
T 1lmj_A 53 PLLCRGGVCHNTE-----GSYRCECPPGHQLSPNISACI 86 (86)
T ss_dssp SSTTTTSEEEEET-----TEEEEESCTTSCCCSSSCCCC
T ss_pred CCcCCCCEeEcCC-----CCEEEECcCCcccCCCCCccC
Confidence 33454 5899999 999999999999999888773
No 51
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*
Probab=98.84 E-value=1.6e-09 Score=70.84 Aligned_cols=38 Identities=39% Similarity=0.875 Sum_probs=33.4
Q ss_pred CCCCcEEecCCCCceecCCcccCCcCCCCCCCcCCCCC
Q psy4900 12 CSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCP 49 (485)
Q Consensus 12 C~~~~f~C~c~~g~ci~~~~~Cd~~~dC~d~sdE~~C~ 49 (485)
|.+++|+|...+|.||+..|+|||+.||.|+|||.+|+
T Consensus 1 C~~~~f~C~~~~g~Cip~~~~CDg~~DC~dgsDE~~C~ 38 (39)
T 3dpr_E 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG 38 (39)
T ss_dssp CCTTTCCCSSSSSCCCCTTSSSSSSCCSTTTTTSTTCC
T ss_pred CCCCceecCCCCCCEeCccccCCCcccCcCCcccccCC
Confidence 67899999411499999999999999999999999986
No 52
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}
Probab=98.78 E-value=1.2e-09 Score=75.01 Aligned_cols=38 Identities=50% Similarity=1.052 Sum_probs=28.6
Q ss_pred CccCCCcccCCCC-cccCccccCCCCCCCCCCCCCCCCC
Q psy4900 94 TACHVGQFKCANS-LCIPVSYHCDGYRDCIDGSDETNCT 131 (485)
Q Consensus 94 ~~C~~~~f~C~~~-~Ci~~~~~Cdg~~dC~dgsDe~~C~ 131 (485)
..|.+++|+|.++ +||+..|+|||+.||.|||||.+|.
T Consensus 5 ~~C~~~~F~C~~g~~CI~~~~~CDG~~DC~DgSDE~~C~ 43 (48)
T 2i1p_A 5 LNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCP 43 (48)
T ss_dssp CCCCSSSEECSSSSCEECGGGSSSSSCCSSSSHHHHSSC
T ss_pred CCCCCCeeECCCCCEeCCHhhcCCCCCCCCCCcccccCC
Confidence 3577777777777 6787777888888888777777765
No 53
>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}
Probab=98.77 E-value=2e-09 Score=74.42 Aligned_cols=37 Identities=49% Similarity=0.993 Sum_probs=23.2
Q ss_pred CCCCCCCeecCCCCceecCcceeCCCCCCCCCCcccCC
Q psy4900 54 LSCDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDEEKC 91 (485)
Q Consensus 54 ~~C~~~~f~C~~g~~Ci~~~~~Cd~~~dC~d~sDe~~C 91 (485)
..|++++|+|.+|. ||+..|+|||..||.|||||.+|
T Consensus 5 ~~C~~~~F~C~nG~-CIp~~~~CDG~~DC~DgSDE~~~ 41 (52)
T 2m0p_A 5 ASCLDTQYTCDNHQ-CISKNWVCDTDNDCGDGSDEKNC 41 (52)
T ss_dssp CSSCSSEEECTTCC-EEETTSTTSSSCSSSSCHHHHSC
T ss_pred CCCCCCceECCCCC-EEecCccCCCCCCCCCCCccccc
Confidence 44666666666665 66666666666666666666554
No 54
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1
Probab=98.74 E-value=2.3e-09 Score=73.41 Aligned_cols=37 Identities=46% Similarity=1.051 Sum_probs=30.4
Q ss_pred ccCCCcccCC-----CCcccCccccCCCCCCCCCCCCCCCCC
Q psy4900 95 ACHVGQFKCA-----NSLCIPVSYHCDGYRDCIDGSDETNCT 131 (485)
Q Consensus 95 ~C~~~~f~C~-----~~~Ci~~~~~Cdg~~dC~dgsDe~~C~ 131 (485)
.|.+++|+|. +++|||..|+|||+.||.|||||.+|.
T Consensus 4 ~C~~~~F~C~~~~~~~~~CIp~~~~CDG~~DC~DgSDE~~C~ 45 (47)
T 1jrf_A 4 RCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCG 45 (47)
T ss_dssp CCCCCCSCSSSCSCCCTTTSGGGGSSSSSCCSSSSCTTHHHH
T ss_pred CCCCCeeECCCCCCCCCeEcCHhhcCCCCcCCCCCcccccCC
Confidence 5778888887 678888888888888888888887663
No 55
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}
Probab=98.74 E-value=2.5e-09 Score=73.45 Aligned_cols=39 Identities=49% Similarity=1.222 Sum_probs=36.1
Q ss_pred CCCCCCcEEecCCCC-ceecCCcccCCcCCCCCCCcCCCCCC
Q psy4900 10 RKCSPGDFECDPPHG-ICIPKDKRCDGYYDCRNRKDEEGCPA 50 (485)
Q Consensus 10 ~~C~~~~f~C~c~~g-~ci~~~~~Cd~~~dC~d~sdE~~C~~ 50 (485)
..|.+++|+| .+| .||+..|+|||+.||.|+|||.+|..
T Consensus 5 ~~C~~~~F~C--~~g~~CI~~~~~CDG~~DC~DgSDE~~C~~ 44 (48)
T 2i1p_A 5 LNCTSAQFKC--ADGSSCINSRYRCDGVYDCRDNSDEAGCPT 44 (48)
T ss_dssp CCCCSSSEEC--SSSSCEECGGGSSSSSCCSSSSHHHHSSCS
T ss_pred CCCCCCeeEC--CCCCEeCCHhhcCCCCCCCCCCcccccCCC
Confidence 5799999999 778 89999999999999999999999974
No 56
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1
Probab=98.71 E-value=2.3e-09 Score=72.14 Aligned_cols=35 Identities=51% Similarity=1.001 Sum_probs=24.3
Q ss_pred ccCCCcccCCCCcccCccccCCCCCCCCCCCCCCC
Q psy4900 95 ACHVGQFKCANSLCIPVSYHCDGYRDCIDGSDETN 129 (485)
Q Consensus 95 ~C~~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDe~~ 129 (485)
.|.+++|+|.++.|||..|+|||+.||.|||||..
T Consensus 4 ~C~~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~ 38 (44)
T 1j8e_A 4 SCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETH 38 (44)
T ss_dssp SSCTTEEECTTSCEEEGGGTTSSSCCSSSSGGGSH
T ss_pred CCCCCceEeCCCCeEecCcccCCCCCCCCCCCCCC
Confidence 46666777777777777777777777777777754
No 57
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.71 E-value=2.7e-08 Score=102.05 Aligned_cols=105 Identities=10% Similarity=0.130 Sum_probs=82.4
Q ss_pred ccCCCCccCCCCC------CccccccCcccccceE--EEEecCCCCCCccEEecCCCCeEEEeC--CCcEEEEEcCCCCc
Q psy4900 364 KCDSENDCGDGSD------EGDFCSEKTCAYFQFH--AIVLGSNLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTMA 433 (485)
Q Consensus 364 ~~~~~~~y~~d~~------~I~~~~~~~c~~g~~~--~~l~~~~~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~~ 433 (485)
..++..+|+++.. .+.+...+ |.+. ..+. .+..|.+|++||..|+|||+| .++|++.++++...
T Consensus 187 d~~G~~lyvad~~~~~~~~~v~~~~~~----g~~~~~~~l~--~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~ 260 (430)
T 3tc9_A 187 THEADSMIITNDQNNNDRPNNYILTRE----SGFKVITELT--KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET 260 (430)
T ss_dssp CTTSSEEEEEECCSCTTSEEEEEEEGG----GTSCSEEEEE--ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE
T ss_pred eCCCCEEEEEeCCCCcccceEEEEeCC----Cceeeeeeec--cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE
Confidence 3455569998863 23445555 6554 3332 578899999999889999999 78999999998776
Q ss_pred EEEEeC-CCcccceEEEeCCCCeEEEEeCCCCcEEEEEccCC
Q psy4900 434 MSIVSE-AAYKASGVALDINAKRLFWCDNLLDYIETVDYEGK 474 (485)
Q Consensus 434 ~~i~~~-~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG~ 474 (485)
..++.. ...+|.+||+|+..++|||+|...++|.+.+++|.
T Consensus 261 ~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~ 302 (430)
T 3tc9_A 261 TPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWK 302 (430)
T ss_dssp EEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred EEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcc
Confidence 455443 45689999999988889999999999999999986
No 58
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A
Probab=98.70 E-value=9.5e-09 Score=79.66 Aligned_cols=67 Identities=22% Similarity=0.591 Sum_probs=53.1
Q ss_pred Ccc-ccccCCCCCCeeeCCCCceeeCCCCCCCCcchhhhccccccccccccceeheeheeeeeeecccCCCCCCCCCCCC
Q psy4900 183 NCE-FTCQASPTGGVCQCPEGQKVANDSRTCLLYMKNNLKQAVRSSTVSSHVKLVLLEVYVNVLKVRKLPTTAEPQSPNP 261 (485)
Q Consensus 183 ~C~-~~C~n~~~~~~C~C~~G~~l~~~~~~C~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 261 (485)
+|. ..|.|++++|+|.|++||.+ +++.|.|+++
T Consensus 13 ~C~~g~C~n~~g~y~C~C~~Gy~~--~g~~C~dide-------------------------------------------- 46 (82)
T 1emn_A 13 VCKHGQCINTDGSYRCECPFGYIL--AGNECVDTDE-------------------------------------------- 46 (82)
T ss_dssp SCSSSEECCCSSCCCEECCTTEEE--ETTEEEECCG--------------------------------------------
T ss_pred CcCCCEEEecCCCEEEECCCCeEC--CCCccCCccc--------------------------------------------
Confidence 453 37999999999999999987 4678988887
Q ss_pred CCCCCCCcc-ccccccccCCCCCCccccCCCCccccCCCCCC
Q psy4900 262 CGSNNGGCE-HMCIITRASGNALGYKCACDIGYRLSVNGNNC 302 (485)
Q Consensus 262 C~~~~g~C~-~~C~n~~~~~~~g~~~C~C~~Gy~l~~d~~~C 302 (485)
|.. ...|. +.|+|++ ++|+|.|+.||.+..+ ++|
T Consensus 47 C~~-~~~C~~~~C~n~~-----g~y~C~C~~G~~g~~~-~~C 81 (82)
T 1emn_A 47 CSV-GNPCGNGTCKNVI-----GGFECTCEEGFEPGPM-MTC 81 (82)
T ss_dssp GGT-CCTTSSSCEEECS-----SSEEECCSSSSCCCSS-SCC
T ss_pred ccC-CCCCCCCEeECCC-----CCEEeECCCCeEeCCC-Ccc
Confidence 542 23444 5799999 9999999999998776 665
No 59
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}
Probab=98.70 E-value=3e-09 Score=73.43 Aligned_cols=36 Identities=39% Similarity=1.025 Sum_probs=26.6
Q ss_pred ccCCCcccCC-CCcccCccccCCCCCCCCCCCCCCCC
Q psy4900 95 ACHVGQFKCA-NSLCIPVSYHCDGYRDCIDGSDETNC 130 (485)
Q Consensus 95 ~C~~~~f~C~-~~~Ci~~~~~Cdg~~dC~dgsDe~~C 130 (485)
.|.+++|+|. +++||+..|+|||+.||.|||||..|
T Consensus 6 ~C~~~~F~C~~~g~CI~~~~~CDG~~DC~DgSDE~~C 42 (50)
T 2knx_A 6 TCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIA 42 (50)
T ss_dssp TTCTTEEEETTTTEEEETTTTTSSSCCSTTCGGGSGG
T ss_pred CCCCCcEEcCCCCeEcChhhcCCCCCCCCCCCccccc
Confidence 5667777774 77777777777777777777777765
No 60
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1
Probab=98.69 E-value=4.2e-09 Score=70.88 Aligned_cols=38 Identities=39% Similarity=0.852 Sum_probs=34.7
Q ss_pred CCCCCCCcEEecCCCCceecCCcccCCcCCCCCCCcCCCC
Q psy4900 9 FRKCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGC 48 (485)
Q Consensus 9 ~~~C~~~~f~C~c~~g~ci~~~~~Cd~~~dC~d~sdE~~C 48 (485)
...|.+++|+| .+|.||+..|+|||+.||.|+|||..|
T Consensus 2 ~~~C~~~~F~C--~~g~CI~~~~~CDg~~DC~DgSDE~~~ 39 (44)
T 1j8e_A 2 SHSCSSTQFKC--NSGRCIPEHWTCDGDNDCGDYSDETHA 39 (44)
T ss_dssp CSSSCTTEEEC--TTSCEEEGGGTTSSSCCSSSSGGGSHH
T ss_pred CCCCCCCceEe--CCCCeEecCcccCCCCCCCCCCCCCCc
Confidence 35799999999 789999999999999999999999864
No 61
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1
Probab=98.67 E-value=2.5e-09 Score=73.17 Aligned_cols=40 Identities=48% Similarity=1.126 Sum_probs=35.2
Q ss_pred CCCCCCcEEecC---CCCceecCCcccCCcCCCCCCCcCCCCC
Q psy4900 10 RKCSPGDFECDP---PHGICIPKDKRCDGYYDCRNRKDEEGCP 49 (485)
Q Consensus 10 ~~C~~~~f~C~c---~~g~ci~~~~~Cd~~~dC~d~sdE~~C~ 49 (485)
..|.+++|+|.. .++.||+..|+|||+.||.|+|||.+|.
T Consensus 3 ~~C~~~~F~C~~~~~~~~~CIp~~~~CDG~~DC~DgSDE~~C~ 45 (47)
T 1jrf_A 3 SRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCG 45 (47)
T ss_dssp CCCCCCCSCSSSCSCCCTTTSGGGGSSSSSCCSSSSCTTHHHH
T ss_pred CCCCCCeeECCCCCCCCCeEcCHhhcCCCCcCCCCCcccccCC
Confidence 569999999941 0789999999999999999999998875
No 62
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.66 E-value=4.2e-08 Score=96.46 Aligned_cols=108 Identities=18% Similarity=0.142 Sum_probs=86.2
Q ss_pred CCccCCCCC--CccccccCcccccc--eEEEEe--------cCCCCCCccEEecCCCCeEEEeC---CCcEEEEEcCCCC
Q psy4900 368 ENDCGDGSD--EGDFCSEKTCAYFQ--FHAIVL--------GSNLTNPTDLALDPTSGLMFVAD---SNQILRTNMDGTM 432 (485)
Q Consensus 368 ~~~y~~d~~--~I~~~~~~~c~~g~--~~~~l~--------~~~~~~p~~iavD~~~~~lywtd---~~~I~r~~~dG~~ 432 (485)
+++|+++.. +|.+.+.+ |. ...++. ...+..|.+|++||..|.||++| ..+|.+.+.+|..
T Consensus 102 g~l~v~d~~~~~v~~~~~~----g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~ 177 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPH----SKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKF 177 (329)
T ss_dssp SCEEEEETTTTEEEEECTT----CSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCE
T ss_pred CCEEEEECCCCEEEEEeCC----CCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCE
Confidence 558888765 77777777 76 344443 34577899999999889999999 4789999999987
Q ss_pred cEEEEe---------CCCcccceEEEeCCCCeEEEEeCCCCcEEEEEcc-CCCeEEE
Q psy4900 433 AMSIVS---------EAAYKASGVALDINAKRLFWCDNLLDYIETVDYE-GKNRFLI 479 (485)
Q Consensus 433 ~~~i~~---------~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~d-G~~r~~~ 479 (485)
..++.. ..+..|.|||||+..++||++|...++|.+.+++ |+..+++
T Consensus 178 ~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~ 234 (329)
T 3fvz_A 178 VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREI 234 (329)
T ss_dssp EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEE
Confidence 666543 2356799999998889999999999999999998 7766655
No 63
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A
Probab=98.65 E-value=1.5e-09 Score=90.43 Aligned_cols=73 Identities=26% Similarity=0.639 Sum_probs=59.3
Q ss_pred CCCCCCccccccCCCCCCeeeCCCCceeeCCCCCCCCcchhhhccccccccccccceeheeheeeeeeecccCCCCCCCC
Q psy4900 178 DCSLLNCEFTCQASPTGGVCQCPEGQKVANDSRTCLLYMKNNLKQAVRSSTVSSHVKLVLLEVYVNVLKVRKLPTTAEPQ 257 (485)
Q Consensus 178 ~C~~~~C~~~C~n~~~~~~C~C~~G~~l~~~~~~C~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 257 (485)
.|...+|...|.+ .++|+|.|++||.+.. ++.|.|+++
T Consensus 45 ~C~~~~C~~~C~~-~~~y~C~C~~Gy~~~~-g~~C~dide---------------------------------------- 82 (118)
T 1dx5_I 45 FCNQTACPADCDP-NTQASCECPEGYILDD-GFICTDIDE---------------------------------------- 82 (118)
T ss_dssp CCCSSEEECEECT-TSTTCEECCTTEEEET-TTEEEECCH----------------------------------------
T ss_pred ccCCCCCCCcccC-CCCeEeECCCCccCCC-CCccccccc----------------------------------------
Confidence 3556677788988 5899999999999855 788988888
Q ss_pred CCCCCCCCCCCccccccccccCCCCCCccccCCCCccccCC-CCCC
Q psy4900 258 SPNPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVN-GNNC 302 (485)
Q Consensus 258 ~~~~C~~~~g~C~~~C~n~~~~~~~g~~~C~C~~Gy~l~~d-~~~C 302 (485)
|.. ...|.+.|+|++ ++|+|.|+.||.+..+ +++|
T Consensus 83 ----C~~-~~~C~~~C~n~~-----g~y~C~C~~G~~g~~~~g~~C 118 (118)
T 1dx5_I 83 ----CEN-GGFCSGVCHNLP-----GTFECICGPDSALAGQIGTDC 118 (118)
T ss_dssp ----HHH-CSSCSSEEEECS-----SSEEEEECSSSSCEEEESCCC
T ss_pred ----cCC-CCCCcCeEEeCC-----CCEEEECCCCCccCCCCCCCC
Confidence 652 356778899999 9999999999998776 6654
No 64
>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Probab=98.58 E-value=1.7e-08 Score=87.25 Aligned_cols=66 Identities=27% Similarity=0.669 Sum_probs=57.1
Q ss_pred ccccCCCCCCeeeCCCCceeeCCCCCCCCcchhhhccccccccccccceeheeheeeeeeecccCCCCCCCCCCCCCCCC
Q psy4900 186 FTCQASPTGGVCQCPEGQKVANDSRTCLLYMKNNLKQAVRSSTVSSHVKLVLLEVYVNVLKVRKLPTTAEPQSPNPCGSN 265 (485)
Q Consensus 186 ~~C~n~~~~~~C~C~~G~~l~~~~~~C~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~C~~~ 265 (485)
..|.+++++|.|.|++||. ++.|.++++ |...
T Consensus 60 g~C~~~~~~y~C~C~~G~~----G~~C~~~de--------------------------------------------C~~~ 91 (146)
T 1x7a_L 60 GLCKDDINSYECWCQVGFE----GKNCELDAT--------------------------------------------CNIK 91 (146)
T ss_dssp CEEEECSSCEEEECCSSEE----STTTCEECC--------------------------------------------TTSG
T ss_pred CEeECCCCCEEEecCCCCc----CCcCCCCcc--------------------------------------------ccCC
Confidence 4799999999999999996 578988766 7644
Q ss_pred CCCccccc-cccccCCCCCCccccCCCCccccCCCCCCCC
Q psy4900 266 NGGCEHMC-IITRASGNALGYKCACDIGYRLSVNGNNCNQ 304 (485)
Q Consensus 266 ~g~C~~~C-~n~~~~~~~g~~~C~C~~Gy~l~~d~~~C~~ 304 (485)
++.|.+.| ++++ ++|+|.|++||.|..|+++|.+
T Consensus 92 ~~~C~~~C~~n~~-----g~y~C~C~~Gy~l~~dG~~C~~ 126 (146)
T 1x7a_L 92 NGRCKQFCKTGAD-----SKVLCSCTTGYRLAPDQKSCKP 126 (146)
T ss_dssp GGSCSSBCCCCSS-----SCCCCBCCTTEEECTTSSSEEE
T ss_pred CCCCcCCCCCCCC-----CCEEeEcCCCcEeCCCCCcCCC
Confidence 56788899 9998 9999999999999999988865
No 65
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.49 E-value=7.3e-07 Score=90.66 Aligned_cols=109 Identities=17% Similarity=0.135 Sum_probs=79.8
Q ss_pred ccCCCCccCCCCC-CccccccCcccccceEEEE----ecCC-CCCCc-cEEecCCCCeEEEeC--CCcEEEEEcCCCCcE
Q psy4900 364 KCDSENDCGDGSD-EGDFCSEKTCAYFQFHAIV----LGSN-LTNPT-DLALDPTSGLMFVAD--SNQILRTNMDGTMAM 434 (485)
Q Consensus 364 ~~~~~~~y~~d~~-~I~~~~~~~c~~g~~~~~l----~~~~-~~~p~-~iavD~~~~~lywtd--~~~I~r~~~dG~~~~ 434 (485)
.++.+.+|+.+.. .|.+.+++ +....++ .... ...|. +|++||..++|||+| .++|++.+++|. ..
T Consensus 227 ~p~~g~lyv~d~~~~I~~~d~~----~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~ 301 (409)
T 3hrp_A 227 DETEEWLYFVDSNKNFGRFNVK----TQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-CE 301 (409)
T ss_dssp CTTSSEEEEECTTCEEEEEETT----TCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EE
T ss_pred eCCCCeEEEEECCCcEEEEECC----CCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-EE
Confidence 3446788887665 67777776 5544333 2111 23467 999999889999999 689999999998 34
Q ss_pred EEEeCC--------------CcccceEEEeCCCCeEEEEeC-CCCcEEEEEc-cCCCeEEE
Q psy4900 435 SIVSEA--------------AYKASGVALDINAKRLFWCDN-LLDYIETVDY-EGKNRFLI 479 (485)
Q Consensus 435 ~i~~~~--------------~~~p~glavD~~~~~lYW~D~-~~~~I~~~~~-dG~~r~~~ 479 (485)
+++... +.+|.|||+|.. ++||++|+ ..++|.+.++ +|. ..++
T Consensus 302 ~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d-G~lyvad~~~~~~I~~~~~~~G~-v~~~ 360 (409)
T 3hrp_A 302 WFCGSATQKTVQDGLREEALFAQPNGMTVDED-GNFYIVDGFKGYCLRKLDILDGY-VSTV 360 (409)
T ss_dssp EEEECTTCCSCBCEEGGGCBCSSEEEEEECTT-CCEEEEETTTTCEEEEEETTTTE-EEEE
T ss_pred EEEeCCCCCCcCCCcccccEeCCCeEEEEeCC-CCEEEEeCCCCCEEEEEECCCCE-EEEE
Confidence 444433 678999999965 56999999 9999999994 454 3443
No 66
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.47 E-value=5.6e-07 Score=91.50 Aligned_cols=109 Identities=13% Similarity=0.113 Sum_probs=82.1
Q ss_pred ccccCCCCccCCCCC---CccccccCcccccceEEEEe----cCCCCCCccEEecCCCCeEEEeC-CCcEEEEEcCCCCc
Q psy4900 362 TWKCDSENDCGDGSD---EGDFCSEKTCAYFQFHAIVL----GSNLTNPTDLALDPTSGLMFVAD-SNQILRTNMDGTMA 433 (485)
Q Consensus 362 ~~~~~~~~~y~~d~~---~I~~~~~~~c~~g~~~~~l~----~~~~~~p~~iavD~~~~~lywtd-~~~I~r~~~dG~~~ 433 (485)
.+.++++.+||.+.. .|.+.+.. +.+....+ ......|.+||+||..|.|||++ .++|++.++++...
T Consensus 177 a~~~~g~~l~~~d~~~~~~I~~~d~~----~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~ 252 (409)
T 3hrp_A 177 AVTKDKQRVYSIGWEGTHTVYVYMKA----SGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV 252 (409)
T ss_dssp EECTTSSEEEEEBSSTTCEEEEEEGG----GTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE
T ss_pred eEecCCCcEEEEecCCCceEEEEEcC----CCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE
Confidence 345666778887764 56666665 44432222 33678899999999999999999 67899999997765
Q ss_pred EEE----EeCCC-cccc-eEEEeCCCCeEEEEeCCCCcEEEEEccCC
Q psy4900 434 MSI----VSEAA-YKAS-GVALDINAKRLFWCDNLLDYIETVDYEGK 474 (485)
Q Consensus 434 ~~i----~~~~~-~~p~-glavD~~~~~lYW~D~~~~~I~~~~~dG~ 474 (485)
.++ ..... ..|. +||+|+..++|||+|...++|.+.+++|.
T Consensus 253 ~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~ 299 (409)
T 3hrp_A 253 TLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE 299 (409)
T ss_dssp EEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC
T ss_pred EEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC
Confidence 444 21112 2366 99999989999999999999999999997
No 67
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.45 E-value=3.1e-07 Score=94.10 Aligned_cols=107 Identities=7% Similarity=0.088 Sum_probs=86.0
Q ss_pred CCCCccCCCC-CCccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeCC------CcEEEEEcCCCCc--EEE
Q psy4900 366 DSENDCGDGS-DEGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVADS------NQILRTNMDGTMA--MSI 436 (485)
Q Consensus 366 ~~~~~y~~d~-~~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd~------~~I~r~~~dG~~~--~~i 436 (485)
..++||+++. .+|.+.+++ +.....++ ..+..|.+|++|+..++|||+|. ..|.....+|... ..+
T Consensus 148 ~~g~Lyv~d~~~~I~~id~~----~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l 222 (430)
T 3tc9_A 148 NHNHLYLVGEQHPTRLIDFE----KEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITEL 222 (430)
T ss_dssp EEEEEEEEEBTEEEEEEETT----TTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEE
T ss_pred CCCeEEEEeCCCcEEEEECC----CCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeee
Confidence 3578999888 488888888 76666665 47888999999999888999992 2467777787654 333
Q ss_pred EeCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEccCCCeEEE
Q psy4900 437 VSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEGKNRFLI 479 (485)
Q Consensus 437 ~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG~~r~~~ 479 (485)
. .+..|.+||||+..++|||+|...++|.+.+++|.....+
T Consensus 223 ~--~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~ 263 (430)
T 3tc9_A 223 T--KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPL 263 (430)
T ss_dssp E--ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred c--cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEE
Confidence 3 4789999999998999999999999999999998766444
No 68
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.44 E-value=3.3e-07 Score=93.95 Aligned_cols=76 Identities=17% Similarity=0.187 Sum_probs=64.0
Q ss_pred CCCCCccEEecCCCCeEEEeC--CCcEEEEEcC-CCCcEEEEe-CCCcccceEEEeCCCCeEEEEeCCCCcEEEEEccCC
Q psy4900 399 NLTNPTDLALDPTSGLMFVAD--SNQILRTNMD-GTMAMSIVS-EAAYKASGVALDINAKRLFWCDNLLDYIETVDYEGK 474 (485)
Q Consensus 399 ~~~~p~~iavD~~~~~lywtd--~~~I~r~~~d-G~~~~~i~~-~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG~ 474 (485)
.+..|.+|++|+..|+|||+| .++|+|.+++ |.....++. ....++.+||+|+..++|||+|...++|.++++++.
T Consensus 226 ~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~ 305 (433)
T 4hw6_A 226 NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRE 305 (433)
T ss_dssp ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTT
T ss_pred ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCC
Confidence 578999999999899999999 6789999998 554244443 335577889999988899999999999999999864
No 69
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Probab=98.40 E-value=3.8e-08 Score=88.84 Aligned_cols=73 Identities=30% Similarity=0.731 Sum_probs=33.8
Q ss_pred CCCCCcc--ccccCCCCCCeeeCCCCceeeCCCCCCCC-c-chhhhccccccccccccceeheeheeeeeeecccCCCCC
Q psy4900 179 CSLLNCE--FTCQASPTGGVCQCPEGQKVANDSRTCLL-Y-MKNNLKQAVRSSTVSSHVKLVLLEVYVNVLKVRKLPTTA 254 (485)
Q Consensus 179 C~~~~C~--~~C~n~~~~~~C~C~~G~~l~~~~~~C~d-~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (485)
|...+|. ..|.+++++|.|.|++||. ++.|.+ + ++
T Consensus 45 C~~~pC~ngg~C~n~~g~y~C~C~~Gf~----G~~Ce~~i~de------------------------------------- 83 (195)
T 1nfu_B 45 CETSPCQNQGKCKDGLGEYTCTCLEGFE----GKNCELFTRKL------------------------------------- 83 (195)
T ss_dssp ----------------------------------------CCG-------------------------------------
T ss_pred cCCCCCCCCCEeECCCCCeeEeCCCCce----ecccccccccc-------------------------------------
Confidence 3333454 3799999999999999995 567876 4 45
Q ss_pred CCCCCCCCCCCCCCccccccccccCCCCCCccccCCCCccccCCCCCCCC
Q psy4900 255 EPQSPNPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQ 304 (485)
Q Consensus 255 e~~~~~~C~~~~g~C~~~C~n~~~~~~~g~~~C~C~~Gy~l~~d~~~C~~ 304 (485)
|....+.|.+.|+++. ++|+|.|++||.|..++++|.+
T Consensus 84 -------C~~~~~~C~~~C~n~~-----gsy~C~C~~Gy~l~~dG~~C~~ 121 (195)
T 1nfu_B 84 -------CSLDNGDCDQFCHEEQ-----NSVVCSCARGYTLADNGKACIP 121 (195)
T ss_dssp -------GGTGGGGCSSEEEEET-----TEEEEECCTTEEECTTSSCEEE
T ss_pred -------ccCCCCCCCCEeECCC-----CCeEEECCCCceeCCCCCcccc
Confidence 6644567888999999 9999999999999999998865
No 70
>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*
Probab=98.40 E-value=1.2e-07 Score=78.39 Aligned_cols=69 Identities=29% Similarity=0.598 Sum_probs=55.8
Q ss_pred ccccCCCCCCeeeCCCCceeeCCCCCCCCcchhhhccccccccccccceeheeheeeeeeecccCCCCCCCCCCCCCCCC
Q psy4900 186 FTCQASPTGGVCQCPEGQKVANDSRTCLLYMKNNLKQAVRSSTVSSHVKLVLLEVYVNVLKVRKLPTTAEPQSPNPCGSN 265 (485)
Q Consensus 186 ~~C~n~~~~~~C~C~~G~~l~~~~~~C~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~C~~~ 265 (485)
..|.+++++|+|.|++||. +..|.+..+ .++|...
T Consensus 26 g~C~~~~~~y~C~C~~G~~----G~~C~~~~~-----------------------------------------~~~C~~~ 60 (114)
T 1aut_L 26 GTCIDGIGSFSCDCRSGWE----GRFCQREVS-----------------------------------------FLNCSLD 60 (114)
T ss_dssp EEECCCSSCCCEEECTTEE----STTSCEECC-----------------------------------------SSSSSSG
T ss_pred CCCCCCCCCcEeeCCCCCc----CCCcCcCCc-----------------------------------------CCcCcCC
Confidence 5789999999999999995 345876433 0127655
Q ss_pred CCCccccccccccCCCCCCccccCCCCccccCCCCCCCC
Q psy4900 266 NGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQ 304 (485)
Q Consensus 266 ~g~C~~~C~n~~~~~~~g~~~C~C~~Gy~l~~d~~~C~~ 304 (485)
++.|++.|+++. ++|+|.|+.||.+..++++|.+
T Consensus 61 ~~~C~~~C~n~~-----g~y~C~C~~G~~~~~~g~~C~~ 94 (114)
T 1aut_L 61 NGGCTHYCLEEV-----GWRRCSCAPGYKLGDDLLQCHP 94 (114)
T ss_dssp GGGCSSEEEECS-----SSEEEECCTTEEECTTSSCEEE
T ss_pred CCCCCCEeECCC-----CCEEeECCCCeeECCCCCccCc
Confidence 678989999999 9999999999999999998865
No 71
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=98.39 E-value=1.6e-07 Score=84.19 Aligned_cols=59 Identities=27% Similarity=0.520 Sum_probs=46.6
Q ss_pred CCCCCCCcEEecCCCCceecCCcccCCcCCCCCCCcCC--CCCCCCCC-CCCCCCe--ecCCCCceec
Q psy4900 9 FRKCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEE--GCPATTGL-SCDLDQF--RCANGQKCID 71 (485)
Q Consensus 9 ~~~C~~~~f~C~c~~g~ci~~~~~Cd~~~dC~d~sdE~--~C~~~~~~-~C~~~~f--~C~~g~~Ci~ 71 (485)
...|.+++|+|.-.+|.||+..|+|||..||.|||||. +|.. . +|.+.+| +|.++. |+.
T Consensus 50 ~~~C~~~eFqC~~~~g~CIp~~wvCDG~~DC~DGSDE~~~~C~~---~~tc~~~qF~g~~~~d~-C~k 113 (220)
T 2gtl_N 50 GTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCDT---SVVKAGNVFSGTSTWHG-CLA 113 (220)
T ss_dssp CCSSCTTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCGGGGCG---GGGCTTCEEEEEEEECS-SCC
T ss_pred CCCCCCCccCcCCCCCcEeCcceecCCCCCCCCCCccCcccCCC---CCccCCcceeeEecCCh-hhc
Confidence 36799999999423689999999999999999999996 8975 5 7766554 566655 543
No 72
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=98.36 E-value=1.4e-07 Score=84.43 Aligned_cols=52 Identities=31% Similarity=0.637 Sum_probs=42.2
Q ss_pred CccCCCcccCC--CCcccCccccCCCCCCCCCCCCCC--CCCCC-CcCCCce--ecCCC
Q psy4900 94 TACHVGQFKCA--NSLCIPVSYHCDGYRDCIDGSDET--NCTSI-ACPNNKF--LCPMG 145 (485)
Q Consensus 94 ~~C~~~~f~C~--~~~Ci~~~~~Cdg~~dC~dgsDe~--~C~~~-~c~~~~~--~C~~g 145 (485)
..|.+++|+|. +|.||+..|+|||.+||.||+||. +|... .|+..+| .|.++
T Consensus 51 ~~C~~~eFqC~~~~g~CIp~~wvCDG~~DC~DGSDE~~~~C~~~~tc~~~qF~g~~~~d 109 (220)
T 2gtl_N 51 THCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCDTSVVKAGNVFSGTSTWH 109 (220)
T ss_dssp CSSCTTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCGGGGCGGGGCTTCEEEEEEEEC
T ss_pred CCCCCCccCcCCCCCcEeCcceecCCCCCCCCCCccCcccCCCCCccCCcceeeEecCC
Confidence 46888999995 689999999999999999999996 79766 6655444 56665
No 73
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Probab=98.35 E-value=5.7e-08 Score=82.72 Aligned_cols=66 Identities=30% Similarity=0.705 Sum_probs=33.1
Q ss_pred ccccCCCCCCeeeCCCCceeeCCCCCCCC-c-chhhhccccccccccccceeheeheeeeeeecccCCCCCCCCCCCCCC
Q psy4900 186 FTCQASPTGGVCQCPEGQKVANDSRTCLL-Y-MKNNLKQAVRSSTVSSHVKLVLLEVYVNVLKVRKLPTTAEPQSPNPCG 263 (485)
Q Consensus 186 ~~C~n~~~~~~C~C~~G~~l~~~~~~C~d-~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~C~ 263 (485)
..|.+++++|.|.|++||. ++.|.+ + ++ |.
T Consensus 54 g~C~~~~~~y~C~C~~G~~----G~~C~~~i~d~--------------------------------------------C~ 85 (134)
T 2vh0_B 54 GKCKDGLGEYTCTCLEGFE----GKNCELFTRKL--------------------------------------------CS 85 (134)
T ss_dssp -------------------------------CCG--------------------------------------------GG
T ss_pred CCcccCCCCEEeeCCCCcc----CCccccCCCCc--------------------------------------------cc
Confidence 4799999999999999995 567876 4 44 65
Q ss_pred CCCCCccccccccccCCCCCCccccCCCCccccCCCCCCCC
Q psy4900 264 SNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQ 304 (485)
Q Consensus 264 ~~~g~C~~~C~n~~~~~~~g~~~C~C~~Gy~l~~d~~~C~~ 304 (485)
..++.|.+.|+++. ++|+|.|++||.|..++++|.+
T Consensus 86 ~~~~~C~~~C~~~~-----g~y~C~C~~Gy~l~~~g~~C~~ 121 (134)
T 2vh0_B 86 LDNGDCDQFCHEEQ-----NSVVCSCARGYTLADNGKACIP 121 (134)
T ss_dssp TGGGGCSSEEEEET-----TEEEEECCTTEEECTTSSCEEE
T ss_pred cCCCCCCCEeECCC-----CCEEEECCCCcEECCCCCccCc
Confidence 44567888999998 9999999999999999988864
No 74
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A
Probab=98.35 E-value=1e-07 Score=82.10 Aligned_cols=70 Identities=23% Similarity=0.486 Sum_probs=55.4
Q ss_pred ccccCCCCCCeeeCCCCceeeCC--------CCCCCCcchhhhccccccccccccceeheeheeeeeeecccCCCCCCCC
Q psy4900 186 FTCQASPTGGVCQCPEGQKVAND--------SRTCLLYMKNNLKQAVRSSTVSSHVKLVLLEVYVNVLKVRKLPTTAEPQ 257 (485)
Q Consensus 186 ~~C~n~~~~~~C~C~~G~~l~~~--------~~~C~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 257 (485)
..|.+++++|+|.|++||.+... ++.|.|+++
T Consensus 59 ~~C~n~~g~y~C~C~~Gy~g~~~~~~~~~~~~~~C~dide---------------------------------------- 98 (143)
T 2bou_A 59 SDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDE---------------------------------------- 98 (143)
T ss_dssp EEEEECSSCEEEEECTTEEETTCCSCBSSGGGCCEEECCH----------------------------------------
T ss_pred CEEEcCCCCeEeECCCCcccCcCccccccCCCCCcCCccC----------------------------------------
Confidence 68999999999999999987533 346777776
Q ss_pred CCCCCCCCCCCcc--ccccccccCCCCCCccccCCCCccccCCCCCCCC
Q psy4900 258 SPNPCGSNNGGCE--HMCIITRASGNALGYKCACDIGYRLSVNGNNCNQ 304 (485)
Q Consensus 258 ~~~~C~~~~g~C~--~~C~n~~~~~~~g~~~C~C~~Gy~l~~d~~~C~~ 304 (485)
|......|. +.|+|++ ++|+|.|++||.+..+++.|+.
T Consensus 99 ----C~~~~~~C~~~~~C~n~~-----g~y~C~C~~Gy~g~~~~~~C~~ 138 (143)
T 2bou_A 99 ----CSSGQHQCDSSTVCFNTV-----GSYSCRCRPGWKPRHGIPNNQK 138 (143)
T ss_dssp ----HHHTCCCCCTTSEEEECS-----SCEEEECCSSSCBCTTCCSSBT
T ss_pred ----ccCcCCCCCCCCEEECCC-----CCEEeeCCCCcccCCCCccCcc
Confidence 432234454 6799999 9999999999999888888765
No 75
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.34 E-value=1.3e-06 Score=85.68 Aligned_cols=99 Identities=14% Similarity=0.109 Sum_probs=76.1
Q ss_pred CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC--CCcEEEEEcCCCC--cEEEE--------eCCCccc
Q psy4900 377 EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTM--AMSIV--------SEAAYKA 444 (485)
Q Consensus 377 ~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~--~~~i~--------~~~~~~p 444 (485)
.|.+.+.++ |..........+..|.+||+|+. |.||++| .++|.+.+++|.. ..++- ...+..|
T Consensus 70 ~i~~~d~~~---g~~~~~~~~~~~~~p~gia~d~~-g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P 145 (329)
T 3fvz_A 70 TILVIDPNN---AEILQSSGKNLFYLPHGLSIDTD-GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQP 145 (329)
T ss_dssp CEEEECTTT---CCEEEEECTTTCSSEEEEEECTT-SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSE
T ss_pred cEEEEECCC---CeEEeccCCCccCCceEEEECCC-CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCC
Confidence 355555531 55554444456789999999975 6799999 6899999999983 44443 2446689
Q ss_pred ceEEEeCCCCeEEEEeC-CCCcEEEEEccCCCeEEE
Q psy4900 445 SGVALDINAKRLFWCDN-LLDYIETVDYEGKNRFLI 479 (485)
Q Consensus 445 ~glavD~~~~~lYW~D~-~~~~I~~~~~dG~~r~~~ 479 (485)
.+||||+..++||++|. ..++|.+.+.+|....++
T Consensus 146 ~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~ 181 (329)
T 3fvz_A 146 TDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQW 181 (329)
T ss_dssp EEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEE
T ss_pred cEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEe
Confidence 99999988999999997 789999999999877665
No 76
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.34 E-value=2.4e-06 Score=87.46 Aligned_cols=108 Identities=8% Similarity=0.090 Sum_probs=79.0
Q ss_pred cCCCCccCCCCC--CccccccCcccccceEEEEe-cCCCCCCccEEecCCCCeEEEeC--CCcEEEEEcCCCC-----cE
Q psy4900 365 CDSENDCGDGSD--EGDFCSEKTCAYFQFHAIVL-GSNLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTM-----AM 434 (485)
Q Consensus 365 ~~~~~~y~~d~~--~I~~~~~~~c~~g~~~~~l~-~~~~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~-----~~ 434 (485)
+..+++|+++.. +|.+.+.++ |.....++ ......+.+|++||..++|||+| .++|.++.+|+.. ..
T Consensus 237 ~~~G~lyv~d~~~~~V~~~d~~~---g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~ 313 (433)
T 4hw6_A 237 PQNGKIYYTRYHHAMISSYDPAT---GTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPY 313 (433)
T ss_dssp TTTCCEEECBTTCSEEEEECTTT---CCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCE
T ss_pred CCCCeEEEEECCCCEEEEEECCC---CeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEE
Confidence 335889998876 677777651 44423333 23344566799999988899999 6899999998642 23
Q ss_pred EEEeC--------------CCcccceEEE--------eCCCCeEEEEeCCCCcEEEEEccCCC
Q psy4900 435 SIVSE--------------AAYKASGVAL--------DINAKRLFWCDNLLDYIETVDYEGKN 475 (485)
Q Consensus 435 ~i~~~--------------~~~~p~glav--------D~~~~~lYW~D~~~~~I~~~~~dG~~ 475 (485)
++... .+.+|.|||| |-..++||++|+..++|.+.+.+|..
T Consensus 314 ~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~G~v 376 (433)
T 4hw6_A 314 IVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPEGRV 376 (433)
T ss_dssp EEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTTSEE
T ss_pred EEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCCCCE
Confidence 44432 3678999999 23788999999999999999998843
No 77
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Probab=98.27 E-value=1e-07 Score=82.53 Aligned_cols=119 Identities=18% Similarity=0.376 Sum_probs=63.8
Q ss_pred CCCCCcc-ccccCCCCCCeeeCCCCceeeCCCCCCCCcchhh--------hccccccccccccceehee-hee-----ee
Q psy4900 179 CSLLNCE-FTCQASPTGGVCQCPEGQKVANDSRTCLLYMKNN--------LKQAVRSSTVSSHVKLVLL-EVY-----VN 243 (485)
Q Consensus 179 C~~~~C~-~~C~n~~~~~~C~C~~G~~l~~~~~~C~d~~e~~--------~~~~~~~~~~~~~~~~~~~-~~~-----~~ 243 (485)
|...+|. ..|.|++++|+|.|++||.+...++.|.+..... .+...... ...+...... ..+ ..
T Consensus 7 C~~~pC~ng~C~n~~g~y~C~C~~G~~g~~~~~~C~~~~~~~C~~~~~g~~C~~~~~~-c~~~~~C~~~~g~~~g~~C~~ 85 (147)
T 2w86_A 7 CESSPCINGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEINING-ATLKSQCCSSLGAAWGSPCTL 85 (147)
T ss_dssp GGGCCSBTSEEEEETTEEEEECCTTEEECTTSSBEEECCCEEEEEEEETTEEEEEEEE-EECHHHHHTTTCSEETTTTEE
T ss_pred CcCCCCCCCEeECCCCCEEeECCCCcccCCCCCeecCCCCCcccCCCCCCccccCCCc-cccCCccccCcCcccCCCccc
Confidence 4444564 3799999999999999999876677776543210 00000000 0000000000 000 00
Q ss_pred e-eecccCCCCC-----CCCCCCCCCCCCCCccc-cccccccCCCCCCccccCCCCccccCCCCCCC
Q psy4900 244 V-LKVRKLPTTA-----EPQSPNPCGSNNGGCEH-MCIITRASGNALGYKCACDIGYRLSVNGNNCN 303 (485)
Q Consensus 244 ~-~~~~~~~~~~-----e~~~~~~C~~~~g~C~~-~C~n~~~~~~~g~~~C~C~~Gy~l~~d~~~C~ 303 (485)
. .......|.. .-.++++|....+.|++ .|+|++ ++|+|.|++||.+..++++|.
T Consensus 86 c~~~C~C~~Gy~~~~g~~C~dideC~~~~~~C~~g~C~n~~-----g~y~C~C~~Gy~g~~~~~~C~ 147 (147)
T 2w86_A 86 CQVDPICGKGYSRIKGTQCEDIDECEVFPGVCKNGLCVNTR-----GSFKCQCPSGMTLDATGRICL 147 (147)
T ss_dssp CCCCTTTCTTEEEEETTEEEECCHHHHSTTCSSSSEEEEET-----TEEEEECCTTCCBCTTSSCBC
T ss_pred CCCcccCCCccccCCCCccCccccccCCCCCCCCCEEECCC-----CCEEeeCCCCCccCCCCCeeC
Confidence 0 0001111110 00123446544566874 899999 999999999999999888873
No 78
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...
Probab=98.25 E-value=2.2e-07 Score=79.89 Aligned_cols=69 Identities=28% Similarity=0.597 Sum_probs=55.0
Q ss_pred ccccCCCCCCeeeCCCCceeeCCCCCCCC-cchhhhccccccccccccceeheeheeeeeeecccCCCCCCCCCCCCCCC
Q psy4900 186 FTCQASPTGGVCQCPEGQKVANDSRTCLL-YMKNNLKQAVRSSTVSSHVKLVLLEVYVNVLKVRKLPTTAEPQSPNPCGS 264 (485)
Q Consensus 186 ~~C~n~~~~~~C~C~~G~~l~~~~~~C~d-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~C~~ 264 (485)
..|.+++++|+|.|++||. ++.|.+ +++.. .|..
T Consensus 59 g~C~~~~g~y~C~C~~G~~----G~~C~~~~~~c~-----------------------------------------~c~~ 93 (142)
T 2c4f_L 59 GSCKDQLQSYICFCLPAFE----GRNCETHKDDQL-----------------------------------------ICVN 93 (142)
T ss_dssp CEEEEETTEEEEECCTTEE----STTSCEEGGGCC-----------------------------------------STTT
T ss_pred CEEeCCCCCEEeeCCCCcc----CCccccCccccc-----------------------------------------cccC
Confidence 3799999999999999995 567876 34410 0222
Q ss_pred CCCCccccccccccCCCCC-CccccCCCCccccCCCCCCCC
Q psy4900 265 NNGGCEHMCIITRASGNAL-GYKCACDIGYRLSVNGNNCNQ 304 (485)
Q Consensus 265 ~~g~C~~~C~n~~~~~~~g-~~~C~C~~Gy~l~~d~~~C~~ 304 (485)
.++.|.+.|+++. + +|+|.|+.||.|..|+++|.+
T Consensus 94 ~~~~C~~~C~~~~-----g~~y~C~C~~Gy~l~~dG~~C~~ 129 (142)
T 2c4f_L 94 ENGGCEQYCSDHT-----GTKRSCRCHEGYSLLADGVSCTP 129 (142)
T ss_dssp GGGGCSSEEECCT-----TSCCEEECCTTEEECTTSSCEEE
T ss_pred CCCCccCEeECCC-----CCCEEEECCCCceECCCCCCCCC
Confidence 3678889999998 8 999999999999999998865
No 79
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1
Probab=98.23 E-value=3.3e-07 Score=63.73 Aligned_cols=36 Identities=33% Similarity=0.862 Sum_probs=33.0
Q ss_pred CCCCCccccccccccCCCCCCccccCCCCccccCCCCCCCC
Q psy4900 264 SNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQ 304 (485)
Q Consensus 264 ~~~g~C~~~C~n~~~~~~~g~~~C~C~~Gy~l~~d~~~C~~ 304 (485)
..++.|+|.|+|++ |+|+|.|+.||+|..|+++|.+
T Consensus 3 ~~ng~C~~~C~n~~-----gs~~C~C~~Gy~L~~d~~tC~d 38 (51)
T 1kig_L 3 LDNGGCDQFCREER-----SEVRCSCAHGYVLGDDSKSCVS 38 (51)
T ss_dssp TTTTSSSSCCCEET-----TEECCCCCTTEEECTTSSCEEE
T ss_pred CCCCCcCCEeEcCC-----CCeEEeCCCCcEECCCCCcccc
Confidence 35788999999999 9999999999999999999976
No 80
>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*
Probab=98.22 E-value=2.3e-07 Score=68.81 Aligned_cols=44 Identities=32% Similarity=0.672 Sum_probs=38.2
Q ss_pred CCCCCCCCCCccccccccccCCCCC-CccccCCCCccccCCCCCCCC-CCC
Q psy4900 259 PNPCGSNNGGCEHMCIITRASGNAL-GYKCACDIGYRLSVNGNNCNQ-PTC 307 (485)
Q Consensus 259 ~~~C~~~~g~C~~~C~n~~~~~~~g-~~~C~C~~Gy~l~~d~~~C~~-~~C 307 (485)
.++|...+|+|+|+|+|++ | +|+|.|+.||.|..|+++|.+ ++|
T Consensus 5 ~~eC~~~nggC~h~C~n~~-----g~s~~C~C~~Gy~L~~D~~tC~d~dec 50 (69)
T 1kli_L 5 QLICVNENGGCEQYCSDHT-----GTKRSCRCHEGYSLLADGVSCTPTVEY 50 (69)
T ss_dssp CCCTTSGGGGCSSEEEEET-----TTEEEEECCTTEEECTTSSCEEECSSS
T ss_pred cccccCCCCCcCCEeEcCC-----CCCEEEeCCCCCeECCCCCcccCcccc
Confidence 4558767899999999999 8 899999999999999999976 444
No 81
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...
Probab=98.22 E-value=2.2e-07 Score=65.88 Aligned_cols=43 Identities=30% Similarity=0.739 Sum_probs=37.1
Q ss_pred CCCCCCCCccccccccccCCCCCCccccCCCCccccCCCCCCCC-CCCC
Q psy4900 261 PCGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQ-PTCA 308 (485)
Q Consensus 261 ~C~~~~g~C~~~C~n~~~~~~~g~~~C~C~~Gy~l~~d~~~C~~-~~C~ 308 (485)
+|...++.|+|.|+|++ |+|+|.|+.||+|..|+++|.+ ++|.
T Consensus 3 EC~~~~~~C~~~C~nt~-----Gsy~C~C~~Gy~L~~d~~~C~didec~ 46 (55)
T 2jkh_L 3 LCSLDNGDCDQFCHEEQ-----NSVVCSCARGYTLADNGKACIPTGPYP 46 (55)
T ss_dssp CTTTGGGGCSSEEEEET-----TEEEEECCTTEEECTTSSCEEESSSSC
T ss_pred cccCCCCCcCcEeEcCC-----CCeEEeCCCCCEECCCCCeeccCcccc
Confidence 37756778999999999 9999999999999999999976 5543
No 82
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=98.18 E-value=6.4e-07 Score=81.03 Aligned_cols=41 Identities=37% Similarity=0.723 Sum_probs=35.8
Q ss_pred CCccCCCcccCCC--CcccCccccCCCCCCCCCCCCCC--CCCCC
Q psy4900 93 FTACHVGQFKCAN--SLCIPVSYHCDGYRDCIDGSDET--NCTSI 133 (485)
Q Consensus 93 ~~~C~~~~f~C~~--~~Ci~~~~~Cdg~~dC~dgsDe~--~C~~~ 133 (485)
...|.+++|+|.+ |.||+..|+|||.+||.|||||. .|...
T Consensus 51 ~~~C~~~~F~C~~~~g~CI~~~~~CDG~~DC~DgSDE~~~~C~~~ 95 (217)
T 2gtl_M 51 EHHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCSLN 95 (217)
T ss_dssp CCCCCTTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTSHHHHCCG
T ss_pred CCCCCCCceecCCCCCcEechhhccCCCCCCCCCCccccCcCCCC
Confidence 4578999999965 99999999999999999999997 67643
No 83
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.17 E-value=3.4e-06 Score=87.14 Aligned_cols=108 Identities=11% Similarity=0.054 Sum_probs=81.6
Q ss_pred cccCCCCccCCCCC--CccccccCcccccceE-----EEEec--------------CCCCCCc-cEEecC------CCCe
Q psy4900 363 WKCDSENDCGDGSD--EGDFCSEKTCAYFQFH-----AIVLG--------------SNLTNPT-DLALDP------TSGL 414 (485)
Q Consensus 363 ~~~~~~~~y~~d~~--~I~~~~~~~c~~g~~~-----~~l~~--------------~~~~~p~-~iavD~------~~~~ 414 (485)
+.+++..+|++|.. +|.+.+.+ +... .++.. ..|..|. ++++|. ..|.
T Consensus 317 ~~p~G~~lYvaD~~~h~I~kid~d----g~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~ 392 (496)
T 3kya_A 317 IHPTGKYAYFGVINNHYFMRSDYD----EIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYD 392 (496)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEEE----TTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEE
T ss_pred EcCCCCEEEEEeCCCCEEEEEecC----CCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCe
Confidence 34566668998876 77777666 5321 22221 2467899 888873 5789
Q ss_pred EEEeC--CCcEEEEEcCCCCcEEEEeC-----------------------CCcccceEEEeCCCCeEEEEeCCCCcEEEE
Q psy4900 415 MFVAD--SNQILRTNMDGTMAMSIVSE-----------------------AAYKASGVALDINAKRLFWCDNLLDYIETV 469 (485)
Q Consensus 415 lywtd--~~~I~r~~~dG~~~~~i~~~-----------------------~~~~p~glavD~~~~~lYW~D~~~~~I~~~ 469 (485)
||.+| .++|.+.+.+|. ..+|... .|.+|.|||||..+++||.+|+..++|.+.
T Consensus 393 lyVaD~~N~rIr~i~~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki 471 (496)
T 3kya_A 393 FYFVDRLNFCVRKVTPEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTI 471 (496)
T ss_dssp EEEEEGGGTEEEEECTTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEEEECCCCEEEEEeCCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence 99999 799999998884 3444432 267899999998789999999999999999
Q ss_pred EccCCC
Q psy4900 470 DYEGKN 475 (485)
Q Consensus 470 ~~dG~~ 475 (485)
+++|..
T Consensus 472 ~~~~~~ 477 (496)
T 3kya_A 472 SMEQEE 477 (496)
T ss_dssp EECCCC
T ss_pred ECCCCc
Confidence 999865
No 84
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.15 E-value=3.4e-06 Score=79.36 Aligned_cols=106 Identities=10% Similarity=0.151 Sum_probs=77.7
Q ss_pred CCccCCCCC--CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC--CCcEEEEEcCCCCcEEEEeCCCcc
Q psy4900 368 ENDCGDGSD--EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTMAMSIVSEAAYK 443 (485)
Q Consensus 368 ~~~y~~d~~--~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~~~~i~~~~~~~ 443 (485)
+++|+++.. .|.+.+.. ...........+..|.+|++|+. |+||+++ ..+|.+.++++.....+....+..
T Consensus 119 g~l~v~~~~~~~i~~~~~~----~~~~~~~~~~~~~~p~~i~~~~~-g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 193 (270)
T 1rwi_B 119 GAVYVADRGNNRVVKLAAG----SKTQTVLPFTGLNDPDGVAVDNS-GNVYVTDTDNNRVVKLEAESNNQVVLPFTDITA 193 (270)
T ss_dssp CCEEEEEGGGTEEEEECTT----CCSCEECCCCSCCSCCCEEECTT-CCEEEEEGGGTEEEEECTTTCCEEECCCSSCCS
T ss_pred CCEEEEECCCCEEEEEECC----CceeEeeccccCCCceeEEEeCC-CCEEEEECCCCEEEEEecCCCceEeecccCCCC
Confidence 457776543 55555433 22222223345678999999985 6799999 579999999987755544456688
Q ss_pred cceEEEeCCCCeEEEEeCCCCcEEEEEccCCCeEEE
Q psy4900 444 ASGVALDINAKRLFWCDNLLDYIETVDYEGKNRFLI 479 (485)
Q Consensus 444 p~glavD~~~~~lYW~D~~~~~I~~~~~dG~~r~~~ 479 (485)
|.+|++|.. ++||+++...+.|.+.+.+|.....+
T Consensus 194 p~~i~~d~~-g~l~v~~~~~~~v~~~~~~~~~~~~~ 228 (270)
T 1rwi_B 194 PWGIAVDEA-GTVYVTEHNTNQVVKLLAGSTTSTVL 228 (270)
T ss_dssp EEEEEECTT-CCEEEEETTTSCEEEECTTCSCCEEC
T ss_pred ceEEEECCC-CCEEEEECCCCcEEEEcCCCCcceee
Confidence 999999965 49999999999999999998765543
No 85
>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*
Probab=98.15 E-value=3.4e-07 Score=64.25 Aligned_cols=41 Identities=34% Similarity=0.768 Sum_probs=35.5
Q ss_pred CCCCCCCccccccccccCCCCC-CccccCCCCccccCCCCCCCC-CCC
Q psy4900 262 CGSNNGGCEHMCIITRASGNAL-GYKCACDIGYRLSVNGNNCNQ-PTC 307 (485)
Q Consensus 262 C~~~~g~C~~~C~n~~~~~~~g-~~~C~C~~Gy~l~~d~~~C~~-~~C 307 (485)
|...++.|+|+|+|++ + +|+|.|+.||+|..|+++|.+ ++|
T Consensus 2 C~~~nggC~~~C~n~~-----ggs~~C~C~~Gy~L~~Dg~tC~d~dec 44 (53)
T 2bz6_L 2 CVNENGGCEQYCSDHT-----GTKRSCRCHEGYSLLADGVSCTPTVEY 44 (53)
T ss_dssp TTSGGGGCSSEEEEET-----TTEEEEECCTTEEECTTSSCEEECSSS
T ss_pred CcCCCCCcCCEeEcCC-----CCCEEeeCCCCCEECCCCCcccCCccc
Confidence 6556788999999999 8 799999999999999999976 444
No 86
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=98.08 E-value=1.3e-06 Score=78.91 Aligned_cols=42 Identities=33% Similarity=0.635 Sum_probs=36.3
Q ss_pred CCCCCCCcEEecCCCCceecCCcccCCcCCCCCCCcCC--CCCC
Q psy4900 9 FRKCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEE--GCPA 50 (485)
Q Consensus 9 ~~~C~~~~f~C~c~~g~ci~~~~~Cd~~~dC~d~sdE~--~C~~ 50 (485)
...|.+++|+|...+|.||+..|+|||..||.|||||. +|..
T Consensus 51 ~~~C~~~~F~C~~~~g~CI~~~~~CDG~~DC~DgSDE~~~~C~~ 94 (217)
T 2gtl_M 51 EHHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCSL 94 (217)
T ss_dssp CCCCCTTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTSHHHHCC
T ss_pred CCCCCCCceecCCCCCcEechhhccCCCCCCCCCCccccCcCCC
Confidence 46799999999411499999999999999999999998 7864
No 87
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=98.04 E-value=1.1e-05 Score=76.79 Aligned_cols=107 Identities=17% Similarity=0.225 Sum_probs=82.9
Q ss_pred CCCccCCCC---CCccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC--CCcEEEEEcCCCCcEEEEe-CC
Q psy4900 367 SENDCGDGS---DEGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTMAMSIVS-EA 440 (485)
Q Consensus 367 ~~~~y~~d~---~~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~~~~i~~-~~ 440 (485)
.+++|.++. ..|.+.+.+ |.....+....+..|.+|++|+. |.||+++ ..+|.+.+.+|.....+.. ..
T Consensus 88 ~g~l~v~~~~~~~~i~~~d~~----g~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~ 162 (286)
T 1q7f_A 88 SGDIIVTERSPTHQIQIYNQY----GQFVRKFGATILQHPRGVTVDNK-GRIIVVECKVMRVIIFDQNGNVLHKFGCSKH 162 (286)
T ss_dssp TTEEEEEECGGGCEEEEECTT----SCEEEEECTTTCSCEEEEEECTT-SCEEEEETTTTEEEEECTTSCEEEEEECTTT
T ss_pred CCeEEEEcCCCCCEEEEECCC----CcEEEEecCccCCCceEEEEeCC-CCEEEEECCCCEEEEEcCCCCEEEEeCCCCc
Confidence 466777663 367777777 77776665556778999999986 6899998 6789999998876555543 35
Q ss_pred CcccceEEEeCCCCeEEEEeCCCCcEEEEEccCCCeEEE
Q psy4900 441 AYKASGVALDINAKRLFWCDNLLDYIETVDYEGKNRFLI 479 (485)
Q Consensus 441 ~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG~~r~~~ 479 (485)
+..|.+|++|. .++||+++...+.|.+.+.+|...+++
T Consensus 163 ~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~ 200 (286)
T 1q7f_A 163 LEFPNGVVVND-KQEIFISDNRAHCVKVFNYEGQYLRQI 200 (286)
T ss_dssp CSSEEEEEECS-SSEEEEEEGGGTEEEEEETTCCEEEEE
T ss_pred cCCcEEEEECC-CCCEEEEECCCCEEEEEcCCCCEEEEE
Confidence 67899999996 577999999999999999988765554
No 88
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.02 E-value=5e-06 Score=78.18 Aligned_cols=103 Identities=16% Similarity=0.190 Sum_probs=81.0
Q ss_pred CCccCCCCC--CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC--CCcEEEEEcCCCCcEEEEeCCCcc
Q psy4900 368 ENDCGDGSD--EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTMAMSIVSEAAYK 443 (485)
Q Consensus 368 ~~~y~~d~~--~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~~~~i~~~~~~~ 443 (485)
+++|+++.. .|.+.+.+ +..........+..|.+|++|+. |+||+++ .++|.+.+++|.....+....+..
T Consensus 161 g~l~v~~~~~~~i~~~~~~----~~~~~~~~~~~~~~p~~i~~d~~-g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 235 (270)
T 1rwi_B 161 GNVYVTDTDNNRVVKLEAE----SNNQVVLPFTDITAPWGIAVDEA-GTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNT 235 (270)
T ss_dssp CCEEEEEGGGTEEEEECTT----TCCEEECCCSSCCSEEEEEECTT-CCEEEEETTTSCEEEECTTCSCCEECCCCSCSC
T ss_pred CCEEEEECCCCEEEEEecC----CCceEeecccCCCCceEEEECCC-CCEEEEECCCCcEEEEcCCCCcceeeccCCCCC
Confidence 468887653 67777777 66554444456788999999986 5999999 678999999987766554455778
Q ss_pred cceEEEeCCCCeEEEEeCCCCcEEEEEccCCCe
Q psy4900 444 ASGVALDINAKRLFWCDNLLDYIETVDYEGKNR 476 (485)
Q Consensus 444 p~glavD~~~~~lYW~D~~~~~I~~~~~dG~~r 476 (485)
|.+|++|.. ++||+++...++|.+.+++...+
T Consensus 236 p~~i~~~~~-g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 236 PLAVAVDSD-RTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp EEEEEECTT-CCEEEEEGGGTEEEEECCCGGGS
T ss_pred ceeEEECCC-CCEEEEECCCCEEEEEcCCCccc
Confidence 999999965 57999999999999998876554
No 89
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.02 E-value=1.6e-05 Score=82.05 Aligned_cols=77 Identities=12% Similarity=0.204 Sum_probs=64.8
Q ss_pred CCCCCccEEecCCCCeEEEeC--CCcEEEEEcC--------CCC-----------cEEEEe-CCCcccceEEEeCCCCeE
Q psy4900 399 NLTNPTDLALDPTSGLMFVAD--SNQILRTNMD--------GTM-----------AMSIVS-EAAYKASGVALDINAKRL 456 (485)
Q Consensus 399 ~~~~p~~iavD~~~~~lywtd--~~~I~r~~~d--------G~~-----------~~~i~~-~~~~~p~glavD~~~~~l 456 (485)
.+..|.+|++||..++||+++ ..+|+|.+++ |.. .+.++. ....+|.+||+|+..+.|
T Consensus 245 ~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~l 324 (496)
T 3kya_A 245 AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYA 324 (496)
T ss_dssp EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEE
T ss_pred cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEE
Confidence 567999999999999999999 6789999998 332 224443 345789999999998889
Q ss_pred EEEeCCCCcEEEEEccCCC
Q psy4900 457 FWCDNLLDYIETVDYEGKN 475 (485)
Q Consensus 457 YW~D~~~~~I~~~~~dG~~ 475 (485)
|++|+..++|.++++||..
T Consensus 325 YvaD~~~h~I~kid~dg~~ 343 (496)
T 3kya_A 325 YFGVINNHYFMRSDYDEIK 343 (496)
T ss_dssp EEEETTTTEEEEEEEETTT
T ss_pred EEEeCCCCEEEEEecCCCc
Confidence 9999999999999999975
No 90
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}
Probab=98.01 E-value=4.4e-06 Score=81.79 Aligned_cols=73 Identities=32% Similarity=0.770 Sum_probs=59.2
Q ss_pred CCCCCcc--ccccCCCCCCeeeCCCCceeeCCCCCCC-CcchhhhccccccccccccceeheeheeeeeeecccCCCCCC
Q psy4900 179 CSLLNCE--FTCQASPTGGVCQCPEGQKVANDSRTCL-LYMKNNLKQAVRSSTVSSHVKLVLLEVYVNVLKVRKLPTTAE 255 (485)
Q Consensus 179 C~~~~C~--~~C~n~~~~~~C~C~~G~~l~~~~~~C~-d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 255 (485)
|...+|. ..|.++.++|.|.|++||. ++.|. |+++
T Consensus 8 C~~~pC~~~g~C~~~~~~~~C~C~~g~~----g~~C~~~~~e-------------------------------------- 45 (317)
T 3h5c_B 8 CISQPCLHNGSCQDSIWGYTCTCSPGYE----GSNCELAKNE-------------------------------------- 45 (317)
T ss_dssp TTSCCCTTTCCCCCCSSSCCCCCSSSCC----SSSSCCCSSS--------------------------------------
T ss_pred CCCCCCCCCCEeECCCCCeEEECCCCCc----CCccccCccc--------------------------------------
Confidence 4444453 4688999999999999995 66887 8777
Q ss_pred CCCCCCCCCC-CCCccccccccccCCCCCCccccCCCCccccCCCCCCCC
Q psy4900 256 PQSPNPCGSN-NGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQ 304 (485)
Q Consensus 256 ~~~~~~C~~~-~g~C~~~C~n~~~~~~~g~~~C~C~~Gy~l~~d~~~C~~ 304 (485)
|... .+.|.+.|+|+. ++|+|.|+.||.+..++++|.+
T Consensus 46 ------C~~~~~~~C~~~C~~~~-----g~~~C~C~~g~~~~~~~~~C~~ 84 (317)
T 3h5c_B 46 ------CHPERTDGCQHFCLPGQ-----ESYTCSCAQGYRLGEDHKQCVP 84 (317)
T ss_dssp ------CCTTCTTSCSSEEECCS-----SSCEEECCTTEECCTTSSCCEE
T ss_pred ------CCCCCCCCCcCccccCC-----CeeEEecccccccccccccccc
Confidence 7632 367888999999 9999999999999888888876
No 91
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.01 E-value=1e-05 Score=78.91 Aligned_cols=103 Identities=9% Similarity=0.080 Sum_probs=75.5
Q ss_pred CCCccCCCCC-CccccccCcccccceEEEEec----CCCCCCccEEecCCCCeEEEeC-C------------------Cc
Q psy4900 367 SENDCGDGSD-EGDFCSEKTCAYFQFHAIVLG----SNLTNPTDLALDPTSGLMFVAD-S------------------NQ 422 (485)
Q Consensus 367 ~~~~y~~d~~-~I~~~~~~~c~~g~~~~~l~~----~~~~~p~~iavD~~~~~lywtd-~------------------~~ 422 (485)
.+++|..+.. .|.+.+.+ +....++.. ..+..|.+|++|+..|.||++| . .+
T Consensus 91 ~g~l~v~d~~~~i~~~d~~----~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~ 166 (322)
T 2fp8_A 91 NNQLYIVDCYYHLSVVGSE----GGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGR 166 (322)
T ss_dssp TTEEEEEETTTEEEEECTT----CEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEE
T ss_pred CCcEEEEECCCCEEEEeCC----CCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCce
Confidence 4677777654 46666655 444334432 2256799999998568999998 2 35
Q ss_pred EEEEEcCCCCcEEEEeCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEccCC
Q psy4900 423 ILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEGK 474 (485)
Q Consensus 423 I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG~ 474 (485)
|++.+.++...+++. ..+..|+|||++...+.||++|...++|.+.+++|.
T Consensus 167 v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~ 217 (322)
T 2fp8_A 167 LIKYDPSTKETTLLL-KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGP 217 (322)
T ss_dssp EEEEETTTTEEEEEE-EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSST
T ss_pred EEEEeCCCCEEEEec-cCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 888887755444443 467899999999888899999999999999999973
No 92
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=98.00 E-value=2.2e-05 Score=74.61 Aligned_cols=107 Identities=12% Similarity=0.094 Sum_probs=82.0
Q ss_pred CCccCCCCC--CccccccCcccccceEEEEec-CCCCCCccEEecCCCCeEEEeC--CCcEEEEEcCCCCcEEEEeCC-C
Q psy4900 368 ENDCGDGSD--EGDFCSEKTCAYFQFHAIVLG-SNLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTMAMSIVSEA-A 441 (485)
Q Consensus 368 ~~~y~~d~~--~I~~~~~~~c~~g~~~~~l~~-~~~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~~~~i~~~~-~ 441 (485)
+++|+++.. .|.+.+.+ |.....+.. ..+..|.+|++|+. |.||+++ ..+|.+.+.+|.....+...+ +
T Consensus 132 g~l~v~~~~~~~i~~~~~~----g~~~~~~~~~~~~~~p~~i~~~~~-g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~ 206 (286)
T 1q7f_A 132 GRIIVVECKVMRVIIFDQN----GNVLHKFGCSKHLEFPNGVVVNDK-QEIFISDNRAHCVKVFNYEGQYLRQIGGEGIT 206 (286)
T ss_dssp SCEEEEETTTTEEEEECTT----SCEEEEEECTTTCSSEEEEEECSS-SEEEEEEGGGTEEEEEETTCCEEEEESCTTTS
T ss_pred CCEEEEECCCCEEEEEcCC----CCEEEEeCCCCccCCcEEEEECCC-CCEEEEECCCCEEEEEcCCCCEEEEEccCCcc
Confidence 467877654 67777777 776655543 45678999999986 7899998 689999999887555443332 5
Q ss_pred cccceEEEeCCCCeEEEEeCCCC-cEEEEEccCCCeEEEe
Q psy4900 442 YKASGVALDINAKRLFWCDNLLD-YIETVDYEGKNRFLIL 480 (485)
Q Consensus 442 ~~p~glavD~~~~~lYW~D~~~~-~I~~~~~dG~~r~~~~ 480 (485)
..|.+|++|. .++||.++...+ +|.+.+.+|...+++.
T Consensus 207 ~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~~g~~~~~~~ 245 (286)
T 1q7f_A 207 NYPIGVGINS-NGEILIADNHNNFNLTIFTQDGQLISALE 245 (286)
T ss_dssp CSEEEEEECT-TCCEEEEECSSSCEEEEECTTSCEEEEEE
T ss_pred CCCcEEEECC-CCCEEEEeCCCCEEEEEECCCCCEEEEEc
Confidence 7899999996 569999999886 9999999887666554
No 93
>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*
Probab=98.00 E-value=5.2e-06 Score=70.57 Aligned_cols=70 Identities=20% Similarity=0.447 Sum_probs=45.4
Q ss_pred ccccCCCCCCeeeCCCCceeeCCCCCCC-CcchhhhccccccccccccceeheeheeeeeeecccCCCCCCCCCCCCCCC
Q psy4900 186 FTCQASPTGGVCQCPEGQKVANDSRTCL-LYMKNNLKQAVRSSTVSSHVKLVLLEVYVNVLKVRKLPTTAEPQSPNPCGS 264 (485)
Q Consensus 186 ~~C~n~~~~~~C~C~~G~~l~~~~~~C~-d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~C~~ 264 (485)
..|.+++++|+|.|++||. +..|. ++++ |.
T Consensus 57 ~~C~~~~g~~~C~C~~G~~----G~~C~~~~~~--------------------------------------------C~- 87 (135)
T 2vj3_A 57 ATCLDQIGEFQCICMPGYE----GVHCEVNTDE--------------------------------------------CA- 87 (135)
T ss_dssp CEEEECSSCEEEECCTTEE----SSSSCEECCT--------------------------------------------TT-
T ss_pred CEEeCCCCCceeeCCCCCc----CCcceecCCc--------------------------------------------cc-
Confidence 5799999999999999996 34664 4444 43
Q ss_pred CCCCcc--ccccccccCCCCCCccccCCCCccccCCCCCCCC--CCCCCceEEc
Q psy4900 265 NNGGCE--HMCIITRASGNALGYKCACDIGYRLSVNGNNCNQ--PTCAPGEFQC 314 (485)
Q Consensus 265 ~~g~C~--~~C~n~~~~~~~g~~~C~C~~Gy~l~~d~~~C~~--~~C~~~~~~c 314 (485)
...|. ..|+++. ++|+|.|+.||. +..|.. ++|......|
T Consensus 88 -~~~C~~~g~C~~~~-----g~~~C~C~~G~~----G~~C~~~i~~C~~~~~~c 131 (135)
T 2vj3_A 88 -SSPCLHNGRCLDKI-----NEFQCECPTGFT----GHLCQVDLHHILDAQKMV 131 (135)
T ss_dssp -TCCSTTTCEEEECS-----SCEEEECCTTEE----SSSSCEECC---------
T ss_pred -CCCcCCCCEeECCC-----CCeEEECCCCCc----CCccCccCccccCCCcce
Confidence 22343 4688888 999999999996 567753 5666554444
No 94
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*
Probab=97.94 E-value=4.6e-06 Score=88.13 Aligned_cols=86 Identities=26% Similarity=0.583 Sum_probs=61.8
Q ss_pred CCCCCcc--ccccCCCCC-Cee-eCCCCceeeCCCCCCCCcchhhhccccccccccccceeheeheeeeeeecccCCCCC
Q psy4900 179 CSLLNCE--FTCQASPTG-GVC-QCPEGQKVANDSRTCLLYMKNNLKQAVRSSTVSSHVKLVLLEVYVNVLKVRKLPTTA 254 (485)
Q Consensus 179 C~~~~C~--~~C~n~~~~-~~C-~C~~G~~l~~~~~~C~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (485)
|...+|. ..|.+++++ |+| .|++||. .+++.|.++++
T Consensus 6 C~~nPC~~gg~C~n~~~Gsy~C~~C~~Gyt--Gdg~~CeDiDE------------------------------------- 46 (634)
T 1yo8_A 6 CLSNPCFPGAQCSSFPDGSWSCGFCPVGFL--GNGTHCEDLDE------------------------------------- 46 (634)
T ss_dssp GGGCCSCTTCCEEECTTSCEEECCCCTTBC--SCSSSCCBCCT-------------------------------------
T ss_pred cCCCCCCCCCEEecCCCCCeECCcCCCccC--CCCCCcccccc-------------------------------------
Confidence 3334453 479998854 999 9999996 45688998888
Q ss_pred CCCCCCCCCCCCCCccc-----cccccccCCCCCCcccc-CCCCccccC-----------CCCCCCC-CCCCCceEEcC
Q psy4900 255 EPQSPNPCGSNNGGCEH-----MCIITRASGNALGYKCA-CDIGYRLSV-----------NGNNCNQ-PTCAPGEFQCA 315 (485)
Q Consensus 255 e~~~~~~C~~~~g~C~~-----~C~n~~~~~~~g~~~C~-C~~Gy~l~~-----------d~~~C~~-~~C~~~~~~c~ 315 (485)
|....+.|.+ .|+++. ++|+|. |+.||.... +++.|++ ++|......|.
T Consensus 47 -------C~~~p~~C~~gg~~~~CvNt~-----gsY~C~~C~~Gy~G~~c~g~g~~~~~~dg~~C~dideC~~~~~pC~ 113 (634)
T 1yo8_A 47 -------CALVPDICFSTSKVPRCVNTQ-----PGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCH 113 (634)
T ss_dssp -------TTTSCCCSCCCSSSCCEEECS-----SSEEECCCCTTEEECCCEESSSHHHHSCCCCEEECCTTTTTCCCCC
T ss_pred -------ccCCCCcccCCccccceeecc-----CceecccCCCCcccCccccccccccccCCCcccccccccCCCcccc
Confidence 7644555764 799999 999998 999998542 4556765 66765434453
No 95
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=97.92 E-value=3.3e-05 Score=73.35 Aligned_cols=104 Identities=10% Similarity=0.127 Sum_probs=79.0
Q ss_pred CCccCCCCC--CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC--CCcEEEEEcCCCCcEEEEeCCCcc
Q psy4900 368 ENDCGDGSD--EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTMAMSIVSEAAYK 443 (485)
Q Consensus 368 ~~~y~~d~~--~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~~~~i~~~~~~~ 443 (485)
+++|+++.. .|.+.+.+ +......+...+..|.+|++|+ .|.||+++ ...|.+.+.+|......+......
T Consensus 157 g~l~v~~~~~~~i~~~~~~----g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~ 231 (300)
T 2qc5_A 157 NALWFTENQNNSIGRITNT----GKLEEYPLPTNAAAPVGITSGN-DGALWFVEIMGNKIGRITTTGEISEYDIPTPNAR 231 (300)
T ss_dssp SSEEEEETTTTEEEEECTT----CCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECTTCCEEEEECSSTTCC
T ss_pred CCEEEEecCCCeEEEECCC----CcEEEeeCCCCCCCcceEEECC-CCCEEEEccCCCEEEEEcCCCcEEEEECCCCCCC
Confidence 457877643 67777767 7776654545677899999998 47999998 567999999776544334445778
Q ss_pred cceEEEeCCCCeEEEEeCCCCcEEEEEccCCCeE
Q psy4900 444 ASGVALDINAKRLFWCDNLLDYIETVDYEGKNRF 477 (485)
Q Consensus 444 p~glavD~~~~~lYW~D~~~~~I~~~~~dG~~r~ 477 (485)
|.+|++|.. ++||+++...+.|.+.+.+|..+.
T Consensus 232 ~~~i~~d~~-g~l~v~~~~~~~i~~~~~~g~~~~ 264 (300)
T 2qc5_A 232 PHAITAGKN-SEIWFTEWGANQIGRITNDNTIQE 264 (300)
T ss_dssp EEEEEECST-TCEEEEETTTTEEEEECTTSCEEE
T ss_pred ceEEEECCC-CCEEEeccCCCeEEEECCCCcEEE
Confidence 999999965 679999998899999998775443
No 96
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.91 E-value=2.3e-05 Score=77.97 Aligned_cols=115 Identities=17% Similarity=0.153 Sum_probs=82.8
Q ss_pred cccCCCCccCCCCC-CccccccCcccccceEEEEe-----cCCCCCCccEEecCC---CCeEEEeC-C--------CcEE
Q psy4900 363 WKCDSENDCGDGSD-EGDFCSEKTCAYFQFHAIVL-----GSNLTNPTDLALDPT---SGLMFVAD-S--------NQIL 424 (485)
Q Consensus 363 ~~~~~~~~y~~d~~-~I~~~~~~~c~~g~~~~~l~-----~~~~~~p~~iavD~~---~~~lywtd-~--------~~I~ 424 (485)
+.++ +++|+++.. +|.+.+.+ |. .++. ..+...|.+||++|. .++||+++ . .+|.
T Consensus 36 ~~pd-G~l~V~e~~g~I~~~d~~----G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~ 108 (354)
T 3a9g_A 36 PLGG-GRYLVTERPGRLVLISPS----GK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVI 108 (354)
T ss_dssp EEET-TEEEEEETTTEEEEECSS----CE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEE
T ss_pred EcCC-CeEEEEeCCCEEEEEeCC----Cc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEE
Confidence 3444 458887766 77777666 76 2222 245677999999998 89999987 3 7899
Q ss_pred EEEcCCC-----CcEEEEe----CCCcccceEEEeCCCCeEEEEeCC-------------CCcEEEEEccCC--------
Q psy4900 425 RTNMDGT-----MAMSIVS----EAAYKASGVALDINAKRLFWCDNL-------------LDYIETVDYEGK-------- 474 (485)
Q Consensus 425 r~~~dG~-----~~~~i~~----~~~~~p~glavD~~~~~lYW~D~~-------------~~~I~~~~~dG~-------- 474 (485)
|..+++. ..++|+. ...+.|.+|++++ .++||+++.. .++|.+++.||+
T Consensus 109 r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~ 187 (354)
T 3a9g_A 109 RGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFP 187 (354)
T ss_dssp EEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSST
T ss_pred EEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCC
Confidence 9999876 2455543 2356789999996 5689999632 368999999998
Q ss_pred CeEEEecCCCC
Q psy4900 475 NRFLILRGSQN 485 (485)
Q Consensus 475 ~r~~~~~~~~~ 485 (485)
..+++..+++|
T Consensus 188 ~~~i~a~G~rn 198 (354)
T 3a9g_A 188 NSPIWSYGHRN 198 (354)
T ss_dssp TCCEEEECCSC
T ss_pred CCcEEEEccCC
Confidence 55666666655
No 97
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=97.89 E-value=8.3e-06 Score=85.26 Aligned_cols=46 Identities=35% Similarity=0.587 Sum_probs=39.4
Q ss_pred CcccCC-CCcccCccccCCCCCCCCCCCCCCCCCCCCcCCCceecCCCCCCCCCcccC
Q psy4900 99 GQFKCA-NSLCIPVSYHCDGYRDCIDGSDETNCTSIACPNNKFLCPMGAAGGKPKCIP 155 (485)
Q Consensus 99 ~~f~C~-~~~Ci~~~~~Cdg~~dC~dgsDe~~C~~~~c~~~~~~C~~g~~~~~~~Ci~ 155 (485)
.+|+|. +|+||+..|+|||.+||.|+|||.+|... ...|... .++|
T Consensus 69 ~~f~C~~~g~Ci~~~~~Cdg~~dC~d~sdE~~c~~~-----~~~C~~~------~~~~ 115 (537)
T 3ojy_B 69 EGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCRRI-----YKKCQHE------MDQY 115 (537)
T ss_dssp SSEECTTTCCEECGGGTTSSSCCSSSSCTTSSCSSC-----SSCCSSC------CBCC
T ss_pred CccCcCCCCcEeeccccCCCCCCCCCccccccCCCC-----CCccccC------cCCC
Confidence 689999 99999999999999999999999998743 4567665 6666
No 98
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A
Probab=97.87 E-value=1.1e-06 Score=72.96 Aligned_cols=76 Identities=29% Similarity=0.589 Sum_probs=54.4
Q ss_pred CCCCCccccccCC-CCCCeeeCCCCceeeCCCCCCCCcchhhhccccccccccccceeheeheeeeeeecccCCCCCCCC
Q psy4900 179 CSLLNCEFTCQAS-PTGGVCQCPEGQKVANDSRTCLLYMKNNLKQAVRSSTVSSHVKLVLLEVYVNVLKVRKLPTTAEPQ 257 (485)
Q Consensus 179 C~~~~C~~~C~n~-~~~~~C~C~~G~~l~~~~~~C~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 257 (485)
|...+|++.|.++ +++|+|.|++||.+... ++++..
T Consensus 7 C~~~pC~~~C~~~~~g~y~C~C~~Gy~g~~~-----~~~~C~-------------------------------------- 43 (118)
T 1dx5_I 7 CFRANCEYQCQPLDQTSYLCVCAEGFAPIPH-----EPHRCQ-------------------------------------- 43 (118)
T ss_dssp GGGCCCSSEEEECSSSCEEEECCTTEEEETT-----EEEEEE--------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCEEeECCCCccccCC-----CCCccc--------------------------------------
Confidence 5556788899999 99999999999987421 222200
Q ss_pred CCCCCCCCCCCccccccccccCCCCCCccccCCCCccccCCCCCCCC-CCCC
Q psy4900 258 SPNPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQ-PTCA 308 (485)
Q Consensus 258 ~~~~C~~~~g~C~~~C~n~~~~~~~g~~~C~C~~Gy~l~~d~~~C~~-~~C~ 308 (485)
.+|. .+.|.+.|++ . ++|+|.|+.||.+.. ++.|++ ++|.
T Consensus 44 --~~C~--~~~C~~~C~~-~-----~~y~C~C~~Gy~~~~-g~~C~dideC~ 84 (118)
T 1dx5_I 44 --MFCN--QTACPADCDP-N-----TQASCECPEGYILDD-GFICTDIDECE 84 (118)
T ss_dssp --ECCC--SSEEECEECT-T-----STTCEECCTTEEEET-TTEEEECCHHH
T ss_pred --cccC--CCCCCCcccC-C-----CCeEeECCCCccCCC-CCccccccccC
Confidence 0043 5667788887 5 889999999999865 777765 4554
No 99
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A
Probab=97.87 E-value=8.5e-07 Score=79.90 Aligned_cols=62 Identities=21% Similarity=0.483 Sum_probs=47.7
Q ss_pred cccc----CCCCCCeeeCCCCceeeC-CCCCCCCc--chhhhccccccccccccceeheeheeeeeeecccCCCCCCCCC
Q psy4900 186 FTCQ----ASPTGGVCQCPEGQKVAN-DSRTCLLY--MKNNLKQAVRSSTVSSHVKLVLLEVYVNVLKVRKLPTTAEPQS 258 (485)
Q Consensus 186 ~~C~----n~~~~~~C~C~~G~~l~~-~~~~C~d~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 258 (485)
..|. +++++|+|.|++||.+.. +++.|.++ ++
T Consensus 103 g~C~~~~~~~~g~~~C~C~~Gy~g~~~~~~~C~~~~~~~----------------------------------------- 141 (186)
T 1z1y_A 103 GECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETA----------------------------------------- 141 (186)
T ss_dssp EEEEEEEETTEEEEEEEECTEEEEETTTTTEEEEEECCC-----------------------------------------
T ss_pred CEEeeCCcCCCCCceEECCCCCcccCCCCCcceEcCCCc-----------------------------------------
Confidence 4565 899999999999998754 66778765 33
Q ss_pred CCCCCCCCCCc---cccccccccCCCCCCccccCCCCccccCCC
Q psy4900 259 PNPCGSNNGGC---EHMCIITRASGNALGYKCACDIGYRLSVNG 299 (485)
Q Consensus 259 ~~~C~~~~g~C---~~~C~n~~~~~~~g~~~C~C~~Gy~l~~d~ 299 (485)
|. ..| .+.|+++. ++|+|.|+.||.+..++
T Consensus 142 ---C~---~~C~~~~~~C~n~~-----g~y~C~C~~G~~g~~~~ 174 (186)
T 1z1y_A 142 ---CQ---LXCNTDNEVCXNVE-----GVYXCQCMEGFTFDXEX 174 (186)
T ss_dssp ---CC---CCCCTTTEEEEEET-----TEEEEEECTTCEEETTT
T ss_pred ---cc---ccccccCcceecCC-----CCeeeECCCCCccCccc
Confidence 54 145 35799998 99999999999876544
No 100
>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*
Probab=97.86 E-value=4.3e-06 Score=59.93 Aligned_cols=36 Identities=31% Similarity=0.670 Sum_probs=31.8
Q ss_pred CCccccccCCC-CCCeeeCCCCceeeCCCCCCCCcch
Q psy4900 182 LNCEFTCQASP-TGGVCQCPEGQKVANDSRTCLLYMK 217 (485)
Q Consensus 182 ~~C~~~C~n~~-~~~~C~C~~G~~l~~~~~~C~d~~e 217 (485)
..|++.|.|++ ++|+|.|++||.|..|+++|.|+++
T Consensus 7 ggC~~~C~n~~~gs~~C~C~~Gy~L~~D~~tC~d~~~ 43 (59)
T 2wph_E 7 GRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVP 43 (59)
T ss_dssp GGCSSEEEECSTTCEEEECCTTEEECTTSSCEEESSS
T ss_pred CCcCCEeEeCCCCCEEeeCCCCcEECCCCCcccCCCC
Confidence 35889999999 6999999999999999999988654
No 101
>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*
Probab=97.86 E-value=2.3e-06 Score=61.31 Aligned_cols=38 Identities=37% Similarity=0.861 Sum_probs=34.0
Q ss_pred CCCCCCCccccccccccCCCCC-CccccCCCCccccCCCCCCCC
Q psy4900 262 CGSNNGGCEHMCIITRASGNAL-GYKCACDIGYRLSVNGNNCNQ 304 (485)
Q Consensus 262 C~~~~g~C~~~C~n~~~~~~~g-~~~C~C~~Gy~l~~d~~~C~~ 304 (485)
|...++.|+|+|+|++ + +|+|.|+.||.|..|+++|.+
T Consensus 2 C~~~nggC~~~C~n~~-----~gs~~C~C~~Gy~L~~D~~tC~d 40 (59)
T 2wph_E 2 CNIKNGRCEQFCKNSA-----DNKVVCSCTEGYRLAENQKSCEP 40 (59)
T ss_dssp TTTGGGGCSSEEEECS-----TTCEEEECCTTEEECTTSSCEEE
T ss_pred CcCCCCCcCCEeEeCC-----CCCEEeeCCCCcEECCCCCcccC
Confidence 6556789999999998 5 999999999999999999976
No 102
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*
Probab=97.86 E-value=7.3e-06 Score=86.57 Aligned_cols=70 Identities=26% Similarity=0.583 Sum_probs=50.5
Q ss_pred cccCCCCCCeee-CCCCceeeC-----------CCCCCCCcchhhhccccccccccccceeheeheeeeeeecccCCCCC
Q psy4900 187 TCQASPTGGVCQ-CPEGQKVAN-----------DSRTCLLYMKNNLKQAVRSSTVSSHVKLVLLEVYVNVLKVRKLPTTA 254 (485)
Q Consensus 187 ~C~n~~~~~~C~-C~~G~~l~~-----------~~~~C~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (485)
.|.+++++|+|. |++||.... +++.|.++++
T Consensus 62 ~CvNt~gsY~C~~C~~Gy~G~~c~g~g~~~~~~dg~~C~dide------------------------------------- 104 (634)
T 1yo8_A 62 RCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENP------------------------------------- 104 (634)
T ss_dssp CEEECSSSEEECCCCTTEEECCCEESSSHHHHSCCCCEEECCT-------------------------------------
T ss_pred ceeeccCceecccCCCCcccCccccccccccccCCCccccccc-------------------------------------
Confidence 799999999999 999998532 3445666665
Q ss_pred CCCCCCCCCCCCCCcc--ccccccccCCCCCCccccCCCCccccCCCCCCC
Q psy4900 255 EPQSPNPCGSNNGGCE--HMCIITRASGNALGYKCACDIGYRLSVNGNNCN 303 (485)
Q Consensus 255 e~~~~~~C~~~~g~C~--~~C~n~~~~~~~g~~~C~C~~Gy~l~~d~~~C~ 303 (485)
|....+.|. +.|++++. ...++|+|.|+.||. .+++.|.
T Consensus 105 -------C~~~~~pC~~~~~Cvnt~~-~~~GsY~C~C~~Gy~--GdG~~Ce 145 (634)
T 1yo8_A 105 -------CKDKTHNCHKHAECIYLGH-FSDPMYKCECQTGYA--GDGLICG 145 (634)
T ss_dssp -------TTTTCCCCCTTEEEEECCT-TCSSSEEEEECTTEE--ESSSSEE
T ss_pred -------ccCCCcccccCcccccccc-ccccceeeeccCCcc--ccCcccc
Confidence 764445675 57888751 112789999999997 4567775
No 103
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1
Probab=97.82 E-value=3.4e-06 Score=58.54 Aligned_cols=37 Identities=22% Similarity=0.566 Sum_probs=33.8
Q ss_pred CCccccccCCCCCCeeeCCCCceeeCCCCCCCCcchh
Q psy4900 182 LNCEFTCQASPTGGVCQCPEGQKVANDSRTCLLYMKN 218 (485)
Q Consensus 182 ~~C~~~C~n~~~~~~C~C~~G~~l~~~~~~C~d~~e~ 218 (485)
..|++.|.|++++|+|.|++||.|..++++|.|++++
T Consensus 6 g~C~~~C~n~~gs~~C~C~~Gy~L~~d~~tC~dide~ 42 (51)
T 1kig_L 6 GGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERF 42 (51)
T ss_dssp TSSSSCCCEETTEECCCCCTTEEECTTSSCEEECSSS
T ss_pred CCcCCEeEcCCCCeEEeCCCCcEECCCCCccccCCcc
Confidence 4578899999999999999999999999999999884
No 104
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Probab=97.80 E-value=1.7e-06 Score=76.12 Aligned_cols=64 Identities=23% Similarity=0.434 Sum_probs=51.8
Q ss_pred CCCCCeeeCCC--CceeeCCCCCCCCcchhhhccccccccccccceeheeheeeeeeecccCCCCCCCCCCCCCCCCCCC
Q psy4900 191 SPTGGVCQCPE--GQKVANDSRTCLLYMKNNLKQAVRSSTVSSHVKLVLLEVYVNVLKVRKLPTTAEPQSPNPCGSNNGG 268 (485)
Q Consensus 191 ~~~~~~C~C~~--G~~l~~~~~~C~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~C~~~~g~ 268 (485)
.+++|+|.|++ ||....+++.|.|++| |....+.
T Consensus 96 ~~~~y~C~C~~g~G~~~~~~~~~c~dide--------------------------------------------C~~~~~~ 131 (162)
T 1uzk_A 96 NTSEYKILCPGGEGFRPNPITVILEDIDE--------------------------------------------CQELPGL 131 (162)
T ss_dssp TSHHHHHHCTTCTTEEECTTTCCEEECCH--------------------------------------------HHHCGGG
T ss_pred CCCCceeECCCCCCcccCCCCCccCcccc--------------------------------------------ccCCCCC
Confidence 45678999988 8988666778899988 5433445
Q ss_pred cc-ccccccccCCCCCCccccCCCCccccCCCCCCC
Q psy4900 269 CE-HMCIITRASGNALGYKCACDIGYRLSVNGNNCN 303 (485)
Q Consensus 269 C~-~~C~n~~~~~~~g~~~C~C~~Gy~l~~d~~~C~ 303 (485)
|. +.|+|++ ++|+|.|+.||.+..|+++|.
T Consensus 132 C~~g~C~n~~-----gsy~C~C~~Gy~g~~d~~~C~ 162 (162)
T 1uzk_A 132 CQGGKCINTF-----GSFQCRCPTGYYLNEDTRVCD 162 (162)
T ss_dssp GBTSEEEECS-----SCEEEECCTTCCBCTTTCBBC
T ss_pred cCCCEeEcCC-----CCEEeeCCCCccCCCCCCccC
Confidence 66 4899999 999999999999999988873
No 105
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Probab=97.79 E-value=9.1e-07 Score=77.82 Aligned_cols=35 Identities=20% Similarity=0.548 Sum_probs=30.1
Q ss_pred Cc-cccccCCCCCCeeeCCCCceeeCCCCCCCCcch
Q psy4900 183 NC-EFTCQASPTGGVCQCPEGQKVANDSRTCLLYMK 217 (485)
Q Consensus 183 ~C-~~~C~n~~~~~~C~C~~G~~l~~~~~~C~d~~e 217 (485)
+| ...|.|++++|+|.|++||.+..+++.|.++++
T Consensus 11 ~C~~~~C~n~~gsy~C~C~~Gy~~~~~g~~C~d~~~ 46 (162)
T 1uzk_A 11 TCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRS 46 (162)
T ss_dssp SSBTSEEEEETTEEEEECCTTCEECTTSSBEECCCC
T ss_pred CCCCCEeECCCCCEEEeCCCCCeECCCCCcccCCCC
Confidence 34 368999999999999999999878999988765
No 106
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...
Probab=97.77 E-value=4.2e-06 Score=59.12 Aligned_cols=37 Identities=22% Similarity=0.601 Sum_probs=33.7
Q ss_pred CCccccccCCCCCCeeeCCCCceeeCCCCCCCCcchh
Q psy4900 182 LNCEFTCQASPTGGVCQCPEGQKVANDSRTCLLYMKN 218 (485)
Q Consensus 182 ~~C~~~C~n~~~~~~C~C~~G~~l~~~~~~C~d~~e~ 218 (485)
..|++.|.|++|+|+|.|++||.|..++++|.+++++
T Consensus 9 ~~C~~~C~nt~Gsy~C~C~~Gy~L~~d~~~C~didec 45 (55)
T 2jkh_L 9 GDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPY 45 (55)
T ss_dssp GGCSSEEEEETTEEEEECCTTEEECTTSSCEEESSSS
T ss_pred CCcCcEeEcCCCCeEEeCCCCCEECCCCCeeccCccc
Confidence 3578899999999999999999999999999998874
No 107
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=97.77 E-value=8.3e-05 Score=70.49 Aligned_cols=105 Identities=11% Similarity=0.075 Sum_probs=78.8
Q ss_pred CCccCCCCC--CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC--CCcEEEEEcCCCCcEEEEeCCCcc
Q psy4900 368 ENDCGDGSD--EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTMAMSIVSEAAYK 443 (485)
Q Consensus 368 ~~~y~~d~~--~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~~~~i~~~~~~~ 443 (485)
+++|+++.. .|.+.+.+ |......+......|.+|++|+. |.||+++ ...|.+.+.+|......+...+..
T Consensus 115 g~l~v~~~~~~~i~~~~~~----g~~~~~~~~~~~~~~~~i~~d~~-g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~ 189 (300)
T 2qc5_A 115 GDIWFTQLNGDRIGKLTAD----GTIYEYDLPNKGSYPAFITLGSD-NALWFTENQNNSIGRITNTGKLEEYPLPTNAAA 189 (300)
T ss_dssp TCEEEEETTTTEEEEECTT----SCEEEEECSSTTCCEEEEEECTT-SSEEEEETTTTEEEEECTTCCEEEEECSSTTCC
T ss_pred CCEEEEccCCCeEEEECCC----CCEEEccCCCCCCCceeEEECCC-CCEEEEecCCCeEEEECCCCcEEEeeCCCCCCC
Confidence 567776643 67777777 77665545446778999999986 5699998 678999999776544323345678
Q ss_pred cceEEEeCCCCeEEEEeCCCCcEEEEEccCCCeEE
Q psy4900 444 ASGVALDINAKRLFWCDNLLDYIETVDYEGKNRFL 478 (485)
Q Consensus 444 p~glavD~~~~~lYW~D~~~~~I~~~~~dG~~r~~ 478 (485)
|.+|++|. .++||+++...+.|.+.+.+|.....
T Consensus 190 ~~~i~~d~-~g~l~v~~~~~~~i~~~~~~g~~~~~ 223 (300)
T 2qc5_A 190 PVGITSGN-DGALWFVEIMGNKIGRITTTGEISEY 223 (300)
T ss_dssp EEEEEECT-TSSEEEEETTTTEEEEECTTCCEEEE
T ss_pred cceEEECC-CCCEEEEccCCCEEEEEcCCCcEEEE
Confidence 99999996 67999999988899999987765443
No 108
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.76 E-value=4.6e-05 Score=75.62 Aligned_cols=103 Identities=16% Similarity=0.132 Sum_probs=74.1
Q ss_pred ccCCCCccCCCCC-CccccccCcccccceEEE----EecCCCCCCccEEecCC---CCeEEEeCC-------CcEEEEEc
Q psy4900 364 KCDSENDCGDGSD-EGDFCSEKTCAYFQFHAI----VLGSNLTNPTDLALDPT---SGLMFVADS-------NQILRTNM 428 (485)
Q Consensus 364 ~~~~~~~y~~d~~-~I~~~~~~~c~~g~~~~~----l~~~~~~~p~~iavD~~---~~~lywtd~-------~~I~r~~~ 428 (485)
.+++ ++|+++.. +|.+.+ + |....+ +...++..|.+||++|. .++||.++. .+|.|..+
T Consensus 39 ~pdG-~l~V~e~~g~I~~i~-~----g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~ 112 (352)
T 2ism_A 39 LPDG-GMLIAERPGRIRLFR-E----GRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRH 112 (352)
T ss_dssp CTTS-CEEEEETTTEEEEEE-T----TEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEE
T ss_pred cCCC-eEEEEeCCCeEEEEE-C----CCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEe
Confidence 4443 57887765 666666 5 653322 12345678999999998 889999983 78999999
Q ss_pred CCC---CcEEEEe------CCCcccceEEEeCCCCeEEEEeC-------------CCCcEEEEEccC
Q psy4900 429 DGT---MAMSIVS------EAAYKASGVALDINAKRLFWCDN-------------LLDYIETVDYEG 473 (485)
Q Consensus 429 dG~---~~~~i~~------~~~~~p~glavD~~~~~lYW~D~-------------~~~~I~~~~~dG 473 (485)
++. ..++|+. ...+.|.+|++++ .++||+++. ..++|.+.+.+|
T Consensus 113 ~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG 178 (352)
T 2ism_A 113 LGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRLTPEG 178 (352)
T ss_dssp CSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS
T ss_pred CCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEEcCCC
Confidence 874 3445553 2346789999997 559999973 236899999999
No 109
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.73 E-value=8e-05 Score=73.96 Aligned_cols=83 Identities=16% Similarity=0.218 Sum_probs=66.3
Q ss_pred cceEEEEecCCCCCCccEEecCCCCeEEEeC-CCcEEEEEcCCCCcEEEEe-----CCCcccceEEEeCC---CCeEEEE
Q psy4900 389 FQFHAIVLGSNLTNPTDLALDPTSGLMFVAD-SNQILRTNMDGTMAMSIVS-----EAAYKASGVALDIN---AKRLFWC 459 (485)
Q Consensus 389 g~~~~~l~~~~~~~p~~iavD~~~~~lywtd-~~~I~r~~~dG~~~~~i~~-----~~~~~p~glavD~~---~~~lYW~ 459 (485)
..+...++..++..|.+|+++|. |.||+++ ..+|.+.+.+|. +++.. .....|.|||+++. +++||.+
T Consensus 17 ~~~~~~~va~~l~~P~~ia~~pd-G~l~V~e~~g~I~~~d~~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~ 93 (354)
T 3a9g_A 17 WKFKISEVASDLEVPWSIAPLGG-GRYLVTERPGRLVLISPSGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLY 93 (354)
T ss_dssp CCEEEEEEECSCSCEEEEEEEET-TEEEEEETTTEEEEECSSCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred CCeEEEEEeCCCCCCeEEEEcCC-CeEEEEeCCCEEEEEeCCCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEE
Confidence 34566677788999999999985 7899999 789999987776 44432 34567999999987 8999999
Q ss_pred eCC---C----CcEEEEEccCC
Q psy4900 460 DNL---L----DYIETVDYEGK 474 (485)
Q Consensus 460 D~~---~----~~I~~~~~dG~ 474 (485)
+.. . .+|.+.++++.
T Consensus 94 ~~~~~~~~~~~~~v~r~~~~~~ 115 (354)
T 3a9g_A 94 ASYFAEGGHIRNRVIRGRLDGS 115 (354)
T ss_dssp EEEECGGGCEEEEEEEEEECSS
T ss_pred EeccCCCCCcceEEEEEEECCC
Confidence 864 3 68999999876
No 110
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=97.71 E-value=7.6e-05 Score=73.02 Aligned_cols=100 Identities=13% Similarity=0.093 Sum_probs=72.2
Q ss_pred CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeCCCcEEEEEcCCCCc--EEEEeCCCcccceEEEeCCCC
Q psy4900 377 EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVADSNQILRTNMDGTMA--MSIVSEAAYKASGVALDINAK 454 (485)
Q Consensus 377 ~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd~~~I~r~~~dG~~~--~~i~~~~~~~p~glavD~~~~ 454 (485)
.|.+.+..+ +.....+....-..|.+|+++|..++||+++. .|++.++..... ..++......|.|||||+..+
T Consensus 204 ~v~~id~~t---~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g 279 (328)
T 3dsm_A 204 SLYRIDAET---FTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNG 279 (328)
T ss_dssp EEEEEETTT---TEEEEEEECCTTCCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTC
T ss_pred eEEEEECCC---CeEEEEEecCCCCCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCC
Confidence 455565541 33333333222357999999999999999988 899988875432 122222256899999999999
Q ss_pred eEEEEe----CCCCcEEEEEccCCCeEEEe
Q psy4900 455 RLFWCD----NLLDYIETVDYEGKNRFLIL 480 (485)
Q Consensus 455 ~lYW~D----~~~~~I~~~~~dG~~r~~~~ 480 (485)
+||.++ +..++|.+.+.+|+..+++-
T Consensus 280 ~lyva~~~~y~~~~~V~v~d~~g~~~~~i~ 309 (328)
T 3dsm_A 280 EVYVADAIDYQQQGIVYRYSPQGKLIDEFY 309 (328)
T ss_dssp CEEEEECTTSSSEEEEEEECTTCCEEEEEE
T ss_pred eEEEEcccccccCCEEEEECCCCCEEEEEE
Confidence 999999 77899999999988776654
No 111
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1
Probab=97.70 E-value=1.3e-05 Score=56.03 Aligned_cols=33 Identities=33% Similarity=0.831 Sum_probs=29.9
Q ss_pred CCccccccccccCCCCCCccccCCCCccccCCCCCCCC
Q psy4900 267 GGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQ 304 (485)
Q Consensus 267 g~C~~~C~n~~~~~~~g~~~C~C~~Gy~l~~d~~~C~~ 304 (485)
+.|++.|+|++ |+|+|.|+.||.|..++++|.+
T Consensus 20 ~~C~~~C~n~~-----Gsy~C~C~~Gy~~~~d~~~C~~ 52 (53)
T 1apq_A 20 PQCQHLCHNYV-----GGYFCSCRPGYELQEDRHSCQA 52 (53)
T ss_dssp CTTSSEEEEET-----TEEEEECSTTCEECTTSSCEEC
T ss_pred CCCCCEeECCC-----CCeEEECCCCCeECCCCCccCC
Confidence 67899999999 9999999999999999888853
No 112
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Probab=97.69 E-value=4.6e-05 Score=65.18 Aligned_cols=50 Identities=26% Similarity=0.628 Sum_probs=39.6
Q ss_pred CCCCCCeeeCCCCceeeCCCCCCC-CcchhhhccccccccccccceeheeheeeeeeecccCCCCCCCCCCCCCCCCCCC
Q psy4900 190 ASPTGGVCQCPEGQKVANDSRTCL-LYMKNNLKQAVRSSTVSSHVKLVLLEVYVNVLKVRKLPTTAEPQSPNPCGSNNGG 268 (485)
Q Consensus 190 n~~~~~~C~C~~G~~l~~~~~~C~-d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~C~~~~g~ 268 (485)
+++++|+|.|++||. +..|. ++++ |. ...
T Consensus 75 ~~~~~~~C~C~~G~~----G~~C~~~i~~--------------------------------------------C~--~~~ 104 (143)
T 4d90_A 75 DTFIGYVCKCPRGFN----GIHCQHNINE--------------------------------------------CE--VEP 104 (143)
T ss_dssp TEECCEEEECCTTEE----STTSCEECCT--------------------------------------------TT--TCC
T ss_pred CCCCCeEeECcCCCc----CCCcccCCCc--------------------------------------------CC--CCC
Confidence 777899999999994 56786 7776 54 223
Q ss_pred cc--ccccccccCCCCCCccccCCCCcc
Q psy4900 269 CE--HMCIITRASGNALGYKCACDIGYR 294 (485)
Q Consensus 269 C~--~~C~n~~~~~~~g~~~C~C~~Gy~ 294 (485)
|. +.|+++. ++|+|.|+.||.
T Consensus 105 C~~~~~C~~~~-----g~~~C~C~~G~~ 127 (143)
T 4d90_A 105 CKNGGICTDLV-----ANYSCECPGEFM 127 (143)
T ss_dssp SCTTCEEEEET-----TEEEEECCTTCB
T ss_pred CCCCCEeECCC-----CCeEeECCCCCc
Confidence 43 5789988 999999999996
No 113
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A
Probab=97.67 E-value=1.1e-05 Score=69.11 Aligned_cols=91 Identities=26% Similarity=0.650 Sum_probs=57.5
Q ss_pred ccccCCCCCCeeeCCCCceee-----CCCCCCCCcchhhhccccccccccccceeheeheeeeeeecccCCCCCCCCCCC
Q psy4900 186 FTCQASPTGGVCQCPEGQKVA-----NDSRTCLLYMKNNLKQAVRSSTVSSHVKLVLLEVYVNVLKVRKLPTTAEPQSPN 260 (485)
Q Consensus 186 ~~C~n~~~~~~C~C~~G~~l~-----~~~~~C~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 260 (485)
..|.++ |+|.|++||... .+++.|.|+++
T Consensus 13 ~~C~~~---~~C~C~~G~~g~~~~~~~~~~~C~dide------------------------------------------- 46 (143)
T 2bou_A 13 SSCVNA---TACRCNPGFSSFSEIITTPMETCDDINE------------------------------------------- 46 (143)
T ss_dssp EEESSS---SCEEECTTEECSSSSBCSTTCCCEECCG-------------------------------------------
T ss_pred CEEcCC---CEEeCCCCCcCccccccCCCCcCCcccc-------------------------------------------
Confidence 356663 899999999853 34578888877
Q ss_pred CCCCCC-CCcc--ccccccccCCCCCCccccCCCCccccCCC--------CCCCC-CCCCCceEEcCC-CCc--ccCcee
Q psy4900 261 PCGSNN-GGCE--HMCIITRASGNALGYKCACDIGYRLSVNG--------NNCNQ-PTCAPGEFQCAS-GRC--VPSTFK 325 (485)
Q Consensus 261 ~C~~~~-g~C~--~~C~n~~~~~~~g~~~C~C~~Gy~l~~d~--------~~C~~-~~C~~~~~~c~~-g~c--i~~~~~ 325 (485)
|.... ..|. +.|++++ ++|+|.|+.||.+...+ ..|++ ++|......|.+ +.| .+.+|+
T Consensus 47 -C~~~~~~~C~~~~~C~n~~-----g~y~C~C~~Gy~g~~~~~~~~~~~~~~C~dideC~~~~~~C~~~~~C~n~~g~y~ 120 (143)
T 2bou_A 47 -CATLSKVSCGKFSDCWNTE-----GSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYS 120 (143)
T ss_dssp -GGC----CCCTTEEEEECS-----SCEEEEECTTEEETTCCSCBSSGGGCCEEECCHHHHTCCCCCTTSEEEECSSCEE
T ss_pred -ccCCCCCCCCCCCEEEcCC-----CCeEeECCCCcccCcCccccccCCCCCcCCccCccCcCCCCCCCCEEECCCCCEE
Confidence 54222 1464 5799998 99999999999876543 35654 445432233433 223 344566
Q ss_pred ecC
Q psy4900 326 CDA 328 (485)
Q Consensus 326 cd~ 328 (485)
|.-
T Consensus 121 C~C 123 (143)
T 2bou_A 121 CRC 123 (143)
T ss_dssp EEC
T ss_pred eeC
Confidence 643
No 114
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=97.67 E-value=2.8e-05 Score=81.37 Aligned_cols=33 Identities=42% Similarity=1.034 Sum_probs=25.6
Q ss_pred CCeecC-CCCceecCcceeCCCCCCCCCCcccCCC
Q psy4900 59 DQFRCA-NGQKCIDAKLKCNYHNDCGDNSDEEKCN 92 (485)
Q Consensus 59 ~~f~C~-~g~~Ci~~~~~Cd~~~dC~d~sDe~~C~ 92 (485)
.+|+|. +|. ||+..|+|||.+||.|+|||.+|.
T Consensus 68 ~~f~C~~~g~-Ci~~~~~Cdg~~dC~d~sDE~~C~ 101 (554)
T 3ojy_A 68 QDFQCKETGR-CLKRHLVCNGDQDCLDGSDEDDCE 101 (554)
T ss_dssp SSEECSSSCC-EECGGGTTSSSCCSSSCTTSSSCC
T ss_pred CcCccCCCCE-EcccccccCCcccCCCccccccCC
Confidence 578887 676 888888888888888888887764
No 115
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.65 E-value=9e-05 Score=72.10 Aligned_cols=80 Identities=18% Similarity=0.177 Sum_probs=61.8
Q ss_pred CCCCCCccEEecCCCCeEEEeC--CCcEEEEEcCCC---CcEEEEeCCCcccceEEEeCCCCeEEEEeCC----------
Q psy4900 398 SNLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGT---MAMSIVSEAAYKASGVALDINAKRLFWCDNL---------- 462 (485)
Q Consensus 398 ~~~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~---~~~~i~~~~~~~p~glavD~~~~~lYW~D~~---------- 462 (485)
..+..|.+|++++..+.||++| .++|.+.+++|. .++++.. ... |.||++|. .++||.++..
T Consensus 182 ~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~-~G~l~va~~~~~~~~~~~~~ 258 (322)
T 2fp8_A 182 KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNA-DGHFWVSSSEELDGNMHGRV 258 (322)
T ss_dssp EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECT-TSCEEEEEEEETTSSTTSCE
T ss_pred cCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECC-CCCEEEEecCcccccccCCC
Confidence 5678899999999888899999 689999999973 3344443 223 99999996 5679988866
Q ss_pred CCcEEEEEccCCCeEEEe
Q psy4900 463 LDYIETVDYEGKNRFLIL 480 (485)
Q Consensus 463 ~~~I~~~~~dG~~r~~~~ 480 (485)
.+.|.+.+.+|...+++.
T Consensus 259 ~~~v~~~d~~G~~~~~~~ 276 (322)
T 2fp8_A 259 DPKGIKFDEFGNILEVIP 276 (322)
T ss_dssp EEEEEEECTTSCEEEEEE
T ss_pred ccEEEEECCCCCEEEEEE
Confidence 467889888887665543
No 116
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=97.65 E-value=0.00016 Score=68.49 Aligned_cols=103 Identities=8% Similarity=0.078 Sum_probs=75.8
Q ss_pred CCccCCCCC--CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC--CCcEEEEEcCCCCcEEEEeCCCcc
Q psy4900 368 ENDCGDGSD--EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTMAMSIVSEAAYK 443 (485)
Q Consensus 368 ~~~y~~d~~--~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~~~~i~~~~~~~ 443 (485)
+++|+++.. .|.+.+.+ |......+......|.+|++|+. |.||+++ ...|.+.+.+|......+......
T Consensus 152 g~l~v~~~~~~~i~~~~~~----g~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~ 226 (299)
T 2z2n_A 152 NALWFTENQNNAIGRITES----GDITEFKIPTPASGPVGITKGND-DALWFVEIIGNKIGRITTSGEITEFKIPTPNAR 226 (299)
T ss_dssp SCEEEEETTTTEEEEECTT----CCEEEEECSSTTCCEEEEEECTT-SSEEEEETTTTEEEEECTTCCEEEEECSSTTCC
T ss_pred CCEEEEeCCCCEEEEEcCC----CcEEEeeCCCCCCcceeEEECCC-CCEEEEccCCceEEEECCCCcEEEEECCCCCCC
Confidence 467776543 56666666 77665545556778999999986 7899998 678999999665333222334678
Q ss_pred cceEEEeCCCCeEEEEeCCCCcEEEEEccCCCe
Q psy4900 444 ASGVALDINAKRLFWCDNLLDYIETVDYEGKNR 476 (485)
Q Consensus 444 p~glavD~~~~~lYW~D~~~~~I~~~~~dG~~r 476 (485)
|.+|++|.. ++||+++...+.|.+.+.+|..+
T Consensus 227 ~~~i~~~~~-g~l~v~~~~~~~i~~~d~~g~~~ 258 (299)
T 2z2n_A 227 PHAITAGAG-IDLWFTEWGANKIGRLTSNNIIE 258 (299)
T ss_dssp EEEEEECST-TCEEEEETTTTEEEEEETTTEEE
T ss_pred ceeEEECCC-CCEEEeccCCceEEEECCCCceE
Confidence 999999955 67999998889999999876433
No 117
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=97.63 E-value=0.00018 Score=69.37 Aligned_cols=100 Identities=16% Similarity=0.195 Sum_probs=71.0
Q ss_pred CCccCCCCC--CccccccCcccccceEEEEec---CCCCCCccEEecCCCCeEEEeC-------------------CCcE
Q psy4900 368 ENDCGDGSD--EGDFCSEKTCAYFQFHAIVLG---SNLTNPTDLALDPTSGLMFVAD-------------------SNQI 423 (485)
Q Consensus 368 ~~~y~~d~~--~I~~~~~~~c~~g~~~~~l~~---~~~~~p~~iavD~~~~~lywtd-------------------~~~I 423 (485)
+++|+.+.. .|.+.+.+ |+....... ..+..|.+|++|+. |.||+|| ...|
T Consensus 97 G~l~v~~~~~~~v~~~~~~----g~~~~~~~~~~~~~~~~~~~i~~d~d-G~l~~td~~~g~~~~~~~~~~~~~~~~~~v 171 (305)
T 3dr2_A 97 QRLVHCEHGRRAITRSDAD----GQAHLLVGRYAGKRLNSPNDLIVARD-GAIWFTDPPFGLRKPSQGCPADPELAHHSV 171 (305)
T ss_dssp SCEEEEETTTTEEEEECTT----SCEEEEECEETTEECSCCCCEEECTT-SCEEEECCSGGGSCGGGSCCCCCSSSCEEE
T ss_pred CCEEEEECCCCEEEEECCC----CCEEEEEeccCCCccCCCCCEEECCC-CCEEEeCcCCCccccccccccccccCCCeE
Confidence 446665443 56666666 765433211 12567899999985 7899976 1468
Q ss_pred EEEEcCCCCcEEEEeCCCcccceEEEeCCCCeEEEEeCCC-----CcEEEEEccCC
Q psy4900 424 LRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLL-----DYIETVDYEGK 474 (485)
Q Consensus 424 ~r~~~dG~~~~~i~~~~~~~p~glavD~~~~~lYW~D~~~-----~~I~~~~~dG~ 474 (485)
++.+.++...+.+. .+..|+||++++..+.|||+|... +.|.+.++++.
T Consensus 172 ~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~ 225 (305)
T 3dr2_A 172 YRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDG 225 (305)
T ss_dssp EEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETT
T ss_pred EEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCC
Confidence 99888544444444 678999999999999999999874 78999998864
No 118
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=97.63 E-value=4.3e-05 Score=79.85 Aligned_cols=67 Identities=36% Similarity=0.741 Sum_probs=48.2
Q ss_pred cCCCCCC-CcCCCCCCC----CCCCCCCCCeecC-CCCceecCcceeCCCCCCCCCCcccCCCCCccCCCcccCCCCccc
Q psy4900 36 YYDCRNR-KDEEGCPAT----TGLSCDLDQFRCA-NGQKCIDAKLKCNYHNDCGDNSDEEKCNFTACHVGQFKCANSLCI 109 (485)
Q Consensus 36 ~~dC~d~-sdE~~C~~~----~~~~C~~~~f~C~-~g~~Ci~~~~~Cd~~~dC~d~sDe~~C~~~~C~~~~f~C~~~~Ci 109 (485)
...|... .|+..|... ....| .+|+|. +|. ||+..|+|||.+||.|+|||.+|. ..++.|....+|
T Consensus 43 G~~C~~~l~d~~~C~~~~~C~~~~~c--~~f~C~~~g~-Ci~~~~~Cdg~~dC~d~sdE~~c~-----~~~~~C~~~~~~ 114 (537)
T 3ojy_B 43 GEPCNFSDKEVEDCVTNRPCRSQVRC--EGFVCAQTGR-CVNRRLLCNGDNDCGDQSDEANCR-----RIYKKCQHEMDQ 114 (537)
T ss_dssp CCCCCSCSEEEEECCCCCCCCCCSCC--SSEECTTTCC-EECGGGTTSSSCCSSSSCTTSSCS-----SCSSCCSSCCBC
T ss_pred CCcCccchhhhccCCCccccccCCCC--CccCcCCCCc-EeeccccCCCCCCCCCccccccCC-----CCCCccccCcCC
Confidence 3466643 555666431 01234 799999 887 999999999999999999998874 234567666676
Q ss_pred C
Q psy4900 110 P 110 (485)
Q Consensus 110 ~ 110 (485)
|
T Consensus 115 ~ 115 (537)
T 3ojy_B 115 Y 115 (537)
T ss_dssp C
T ss_pred C
Confidence 6
No 119
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.61 E-value=9.6e-05 Score=73.29 Aligned_cols=88 Identities=17% Similarity=0.228 Sum_probs=67.4
Q ss_pred eEEEEecCCCCCCccEEecCCCCeEEEeC-CCcEEEEEcCCCCcEEEEe-----CCCcccceEEEeCC---CCeEEEEeC
Q psy4900 391 FHAIVLGSNLTNPTDLALDPTSGLMFVAD-SNQILRTNMDGTMAMSIVS-----EAAYKASGVALDIN---AKRLFWCDN 461 (485)
Q Consensus 391 ~~~~l~~~~~~~p~~iavD~~~~~lywtd-~~~I~r~~~dG~~~~~i~~-----~~~~~p~glavD~~---~~~lYW~D~ 461 (485)
+...++..++..|.+|+++|. |.||.++ ..+|.+.. +|.. +++.. ..+..|.|||+++. +++||.++.
T Consensus 21 ~~~~~va~~l~~P~~ia~~pd-G~l~V~e~~g~I~~i~-~g~~-~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~ 97 (352)
T 2ism_A 21 LRVEEVVGGLEVPWALAFLPD-GGMLIAERPGRIRLFR-EGRL-STYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRT 97 (352)
T ss_dssp CCEEEEECCCSCEEEEEECTT-SCEEEEETTTEEEEEE-TTEE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred cEEEEEECCCCCceEEEEcCC-CeEEEEeCCCeEEEEE-CCCc-cEeecceEeecCCCCceeEEECCCCCCCCEEEEEEe
Confidence 445566678999999999987 6799999 78999998 7753 33322 34668999999987 789999997
Q ss_pred CC-----CcEEEEEccCC---CeEEEec
Q psy4900 462 LL-----DYIETVDYEGK---NRFLILR 481 (485)
Q Consensus 462 ~~-----~~I~~~~~dG~---~r~~~~~ 481 (485)
.. .+|.+.++++. .+++|+.
T Consensus 98 ~~~~~~~~~v~r~~~~~~~~~~~~~l~~ 125 (352)
T 2ism_A 98 VAEGGLRNQVVRLRHLGERGVLDRVVLD 125 (352)
T ss_dssp ECTTSSEEEEEEEEECSSCEEEEEEEEE
T ss_pred cCCCCCccEEEEEEeCCCCcCceEEEEE
Confidence 54 78999999875 3445554
No 120
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=97.60 E-value=2.8e-05 Score=81.38 Aligned_cols=37 Identities=38% Similarity=1.004 Sum_probs=33.5
Q ss_pred ccCCCcccCC-CCcccCccccCCCCCCCCCCCCCCCCCC
Q psy4900 95 ACHVGQFKCA-NSLCIPVSYHCDGYRDCIDGSDETNCTS 132 (485)
Q Consensus 95 ~C~~~~f~C~-~~~Ci~~~~~Cdg~~dC~dgsDe~~C~~ 132 (485)
.|. ++|+|. +|+||+..|+|||.+||.|++||.+|..
T Consensus 65 ~c~-~~f~C~~~g~Ci~~~~~Cdg~~dC~d~sDE~~C~~ 102 (554)
T 3ojy_A 65 QCG-QDFQCKETGRCLKRHLVCNGDQDCLDGSDEDDCED 102 (554)
T ss_dssp CCS-SSEECSSSCCEECGGGTTSSSCCSSSCTTSSSCCS
T ss_pred CCC-CcCccCCCCEEcccccccCCcccCCCccccccCCC
Confidence 353 699999 9999999999999999999999999974
No 121
>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*
Probab=97.57 E-value=1e-05 Score=56.54 Aligned_cols=37 Identities=24% Similarity=0.523 Sum_probs=33.5
Q ss_pred CCccccccCCCC-CCeeeCCCCceeeCCCCCCCCcchh
Q psy4900 182 LNCEFTCQASPT-GGVCQCPEGQKVANDSRTCLLYMKN 218 (485)
Q Consensus 182 ~~C~~~C~n~~~-~~~C~C~~G~~l~~~~~~C~d~~e~ 218 (485)
..|++.|.|+++ +|+|.|++||.|..|+++|.|++|+
T Consensus 7 ggC~~~C~n~~ggs~~C~C~~Gy~L~~Dg~tC~d~dec 44 (53)
T 2bz6_L 7 GGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY 44 (53)
T ss_dssp GGCSSEEEEETTTEEEEECCTTEEECTTSSCEEECSSS
T ss_pred CCcCCEeEcCCCCCEEeeCCCCCEECCCCCcccCCccc
Confidence 358899999999 7999999999999999999999884
No 122
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=97.57 E-value=0.00024 Score=67.17 Aligned_cols=103 Identities=12% Similarity=0.142 Sum_probs=75.9
Q ss_pred CCccCCCCC--CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC--CCcEEEEEcCCCCcEEEEeCCCcc
Q psy4900 368 ENDCGDGSD--EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTMAMSIVSEAAYK 443 (485)
Q Consensus 368 ~~~y~~d~~--~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~~~~i~~~~~~~ 443 (485)
+++|+++.. .|.+.+.+ |......+......|.+|++|+. |.||+++ ...|.+.+.+|.-....+......
T Consensus 110 g~l~v~~~~~~~i~~~d~~----g~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~ 184 (299)
T 2z2n_A 110 GDIWFTEMNGNRIGRITDD----GKIREYELPNKGSYPSFITLGSD-NALWFTENQNNAIGRITESGDITEFKIPTPASG 184 (299)
T ss_dssp SCEEEEETTTTEEEEECTT----CCEEEEECSSTTCCEEEEEECTT-SCEEEEETTTTEEEEECTTCCEEEEECSSTTCC
T ss_pred CCEEEEecCCceEEEECCC----CCEEEecCCCCCCCCceEEEcCC-CCEEEEeCCCCEEEEEcCCCcEEEeeCCCCCCc
Confidence 567776533 66666666 77765555555678999999976 6899988 578999999655433323345678
Q ss_pred cceEEEeCCCCeEEEEeCCCCcEEEEEccCCCe
Q psy4900 444 ASGVALDINAKRLFWCDNLLDYIETVDYEGKNR 476 (485)
Q Consensus 444 p~glavD~~~~~lYW~D~~~~~I~~~~~dG~~r 476 (485)
|.+|++|.. ++||+++...+.|.+.+.+|..+
T Consensus 185 ~~~i~~~~~-g~l~v~~~~~~~i~~~~~~g~~~ 216 (299)
T 2z2n_A 185 PVGITKGND-DALWFVEIIGNKIGRITTSGEIT 216 (299)
T ss_dssp EEEEEECTT-SSEEEEETTTTEEEEECTTCCEE
T ss_pred ceeEEECCC-CCEEEEccCCceEEEECCCCcEE
Confidence 999999964 77999998888999999866543
No 123
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A
Probab=97.52 E-value=8.3e-06 Score=73.35 Aligned_cols=75 Identities=24% Similarity=0.533 Sum_probs=50.6
Q ss_pred ccccCCC-----CCCeeeCCCCceeeCCCCCCCCcchhhhccccccccccccceeheeheeeeeeecccCCCCCCCCCCC
Q psy4900 186 FTCQASP-----TGGVCQCPEGQKVANDSRTCLLYMKNNLKQAVRSSTVSSHVKLVLLEVYVNVLKVRKLPTTAEPQSPN 260 (485)
Q Consensus 186 ~~C~n~~-----~~~~C~C~~G~~l~~~~~~C~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 260 (485)
..|.+++ ++|+|.|++||.... ..|. +++.. .+
T Consensus 60 ~~C~~~~~~~~~g~y~C~C~~G~~g~~--~~C~-~d~C~---------------------------------------~~ 97 (186)
T 1z1y_A 60 GQCIENPDPAQVNMYXCGCIEGYTLXE--DTCV-LDVCQ---------------------------------------YX 97 (186)
T ss_dssp EEEEECSSTTSSCSEEEEECTTEEEET--TEEE-EGGGT---------------------------------------TC
T ss_pred CEeecCCCCcCCCCEECCCCCCCccCC--CCCC-CCcCc---------------------------------------CC
Confidence 5799998 899999999998742 2343 33310 01
Q ss_pred CCCCCCCCccccccccccCCCCCCccccCCCCccccC-CCCCCCC---CCCC
Q psy4900 261 PCGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSV-NGNNCNQ---PTCA 308 (485)
Q Consensus 261 ~C~~~~g~C~~~C~n~~~~~~~g~~~C~C~~Gy~l~~-d~~~C~~---~~C~ 308 (485)
+|. ..+.|.+.++++. ++|+|.|+.||.+.. +++.|.+ ++|.
T Consensus 98 ~C~-~~g~C~~~~~~~~-----g~~~C~C~~Gy~g~~~~~~~C~~~~~~~C~ 143 (186)
T 1z1y_A 98 NCG-ESGECIVEYLSEI-----QSAGCSCAIGXVPNPEDEXXCTXTGETACQ 143 (186)
T ss_dssp CCC-TTEEEEEEEETTE-----EEEEEEECTEEEEETTTTTEEEEEECCCCC
T ss_pred CCC-CCCEEeeCCcCCC-----CCceEECCCCCcccCCCCCcceEcCCCccc
Confidence 144 3445555555888 899999999998754 6677764 3554
No 124
>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*
Probab=97.49 E-value=1.8e-05 Score=58.54 Aligned_cols=37 Identities=24% Similarity=0.523 Sum_probs=33.8
Q ss_pred CCccccccCCCC-CCeeeCCCCceeeCCCCCCCCcchh
Q psy4900 182 LNCEFTCQASPT-GGVCQCPEGQKVANDSRTCLLYMKN 218 (485)
Q Consensus 182 ~~C~~~C~n~~~-~~~C~C~~G~~l~~~~~~C~d~~e~ 218 (485)
+.|++.|.|+++ +|+|.|++||.|..++++|.+++++
T Consensus 13 ggC~h~C~n~~g~s~~C~C~~Gy~L~~D~~tC~d~dec 50 (69)
T 1kli_L 13 GGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY 50 (69)
T ss_dssp GGCSSEEEEETTTEEEEECCTTEEECTTSSCEEECSSS
T ss_pred CCcCCEeEcCCCCCEEEeCCCCCeECCCCCcccCcccc
Confidence 458899999999 7999999999999999999999884
No 125
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=97.49 E-value=0.00022 Score=68.41 Aligned_cols=97 Identities=12% Similarity=0.058 Sum_probs=70.8
Q ss_pred CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC--CCcEEEEEcC---CC--CcEEEEeC--CCcccceE
Q psy4900 377 EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD--SNQILRTNMD---GT--MAMSIVSE--AAYKASGV 447 (485)
Q Consensus 377 ~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd--~~~I~r~~~d---G~--~~~~i~~~--~~~~p~gl 447 (485)
.|.+.+.+ |.... +...+..|.+|+++|..+.|||++ ..+|.+.+++ |. ++++++.. ....|.||
T Consensus 131 ~l~~~d~~----g~~~~--~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~ 204 (297)
T 3g4e_A 131 ALYSLFPD----HHVKK--YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGM 204 (297)
T ss_dssp EEEEECTT----SCEEE--EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEE
T ss_pred EEEEEECC----CCEEE--EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCee
Confidence 45555555 54433 335677899999999988999999 6889999986 32 23444432 23579999
Q ss_pred EEeCCCCeEEEEeCCCCcEEEEEcc-CCCeEEEe
Q psy4900 448 ALDINAKRLFWCDNLLDYIETVDYE-GKNRFLIL 480 (485)
Q Consensus 448 avD~~~~~lYW~D~~~~~I~~~~~d-G~~r~~~~ 480 (485)
++|.. ++||.+.+..++|.+.+.+ |+...++.
T Consensus 205 ~~d~~-G~lwva~~~~~~v~~~d~~tG~~~~~i~ 237 (297)
T 3g4e_A 205 CIDAE-GKLWVACYNGGRVIRLDPVTGKRLQTVK 237 (297)
T ss_dssp EEBTT-SCEEEEEETTTEEEEECTTTCCEEEEEE
T ss_pred EECCC-CCEEEEEcCCCEEEEEcCCCceEEEEEE
Confidence 99954 6899999888999999998 76655543
No 126
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.47 E-value=0.00017 Score=71.51 Aligned_cols=107 Identities=11% Similarity=0.034 Sum_probs=72.9
Q ss_pred cccCCCCccCCCCC-CccccccCcccccceEEEE------ecCCCCCCccEEecCC---CCeEEEeCC---------CcE
Q psy4900 363 WKCDSENDCGDGSD-EGDFCSEKTCAYFQFHAIV------LGSNLTNPTDLALDPT---SGLMFVADS---------NQI 423 (485)
Q Consensus 363 ~~~~~~~~y~~d~~-~I~~~~~~~c~~g~~~~~l------~~~~~~~p~~iavD~~---~~~lywtd~---------~~I 423 (485)
+.++++.+|+++.. +|.+.+.+ |.....+ .......|.+||++|. .++||+++. .+|
T Consensus 25 ~~pdG~~l~V~e~~G~i~~~~~~----g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v 100 (353)
T 2g8s_A 25 FLPDNHGMLITLRGGELRHWQAG----KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAV 100 (353)
T ss_dssp ECSTTCCEEEEETTTEEEEEETT----TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEE
T ss_pred EcCCCCEEEEEeCCceEEEEeCC----CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEE
Confidence 34554337777665 66666655 5432211 1233445789999996 899999972 379
Q ss_pred EEEEcCCC-----CcEEEEeC------CCcccceEEEeCCCCeEEEEeCC-------------CCcEEEEEccCC
Q psy4900 424 LRTNMDGT-----MAMSIVSE------AAYKASGVALDINAKRLFWCDNL-------------LDYIETVDYEGK 474 (485)
Q Consensus 424 ~r~~~dG~-----~~~~i~~~------~~~~p~glavD~~~~~lYW~D~~-------------~~~I~~~~~dG~ 474 (485)
.|..+++. ..++|+.. ..++|.+|++++ .++||++... .++|.+++.||+
T Consensus 101 ~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~ 174 (353)
T 2g8s_A 101 GYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE 174 (353)
T ss_dssp EEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred EEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence 99999754 34556542 345689999997 5699999632 468999999997
No 127
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.45 E-value=0.00023 Score=68.73 Aligned_cols=74 Identities=15% Similarity=0.267 Sum_probs=58.3
Q ss_pred CCCCCCccEEecCCCCeEEEeC--CCcEEEEEcCCC----CcEEEEeCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEc
Q psy4900 398 SNLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGT----MAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDY 471 (485)
Q Consensus 398 ~~~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~----~~~~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~ 471 (485)
..+..|.+| ++..++||++| .++|.+..+++. .++++.. +..|.||+||. .++||.+++..++|.+.+.
T Consensus 166 ~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~--~~~P~gi~vd~-dG~l~va~~~~~~V~~~~~ 240 (306)
T 2p4o_A 166 SVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDV-EGNLYGATHIYNSVVRIAP 240 (306)
T ss_dssp CCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBT-TCCEEEECBTTCCEEEECT
T ss_pred CCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec--cCCCCCeEECC-CCCEEEEeCCCCeEEEECC
Confidence 356678888 55578999999 789999999852 2344443 46899999995 5689999999999999999
Q ss_pred cCCCe
Q psy4900 472 EGKNR 476 (485)
Q Consensus 472 dG~~r 476 (485)
+|+..
T Consensus 241 ~G~~~ 245 (306)
T 2p4o_A 241 DRSTT 245 (306)
T ss_dssp TCCEE
T ss_pred CCCEE
Confidence 87653
No 128
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}
Probab=97.40 E-value=7.5e-05 Score=58.07 Aligned_cols=38 Identities=34% Similarity=0.713 Sum_probs=31.3
Q ss_pred CCCCCccccccCCCCCCeeeC--CCCceeeCCCCCCCCcc
Q psy4900 179 CSLLNCEFTCQASPTGGVCQC--PEGQKVANDSRTCLLYM 216 (485)
Q Consensus 179 C~~~~C~~~C~n~~~~~~C~C--~~G~~l~~~~~~C~d~~ 216 (485)
|...+|.+.|.|++++|+|.| ..||.+..+++.|.|++
T Consensus 48 C~~~~C~~~C~n~~g~y~C~C~g~~G~~~~~~~~~C~di~ 87 (87)
T 1z6c_A 48 CSENMCAQLCVNYPGGYTCYCDGKKGFKLAQDQKSCEVVS 87 (87)
T ss_dssp HHHSCCSSEECCCSSSCCEECCSSSCCBCCTTSSSCBCCC
T ss_pred eCCCCCCCEEEccCCCEEEECCCCcCCcccCCCCcceECc
Confidence 434457789999999999999 58999888888998764
No 129
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=97.38 E-value=0.0006 Score=64.99 Aligned_cols=79 Identities=18% Similarity=0.195 Sum_probs=64.1
Q ss_pred EecCCCCCCccEEecCCCCeEEEeC--CCcEEEEEcCCCCcEEEEeCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEc-
Q psy4900 395 VLGSNLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDY- 471 (485)
Q Consensus 395 l~~~~~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~- 471 (485)
++...+..|.++++|+..+.|||++ ..+|.+.+.++. .+. +......|.+|++|. .++||+++...+.|.+.+.
T Consensus 22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~-~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~d~~ 98 (296)
T 3e5z_A 22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSP-EMHPSHHQNGHCLNK-QGHLIACSHGLRRLERQREP 98 (296)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEE-EESSCSSEEEEEECT-TCCEEEEETTTTEEEEECST
T ss_pred EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEE-EECCCCCcceeeECC-CCcEEEEecCCCeEEEEcCC
Confidence 3446788899999999987899999 689999999987 443 445567799999996 6679999988889999998
Q ss_pred cCCCe
Q psy4900 472 EGKNR 476 (485)
Q Consensus 472 dG~~r 476 (485)
+|+.+
T Consensus 99 ~g~~~ 103 (296)
T 3e5z_A 99 GGEWE 103 (296)
T ss_dssp TCCEE
T ss_pred CCcEE
Confidence 56543
No 130
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.33 E-value=0.00051 Score=67.74 Aligned_cols=118 Identities=15% Similarity=0.067 Sum_probs=80.8
Q ss_pred cccCCCCccCCCC--CCccccccCcccccceEEEE-----ecCCCCCCccEEecCC---CCeEEEeC----CCcEEEEEc
Q psy4900 363 WKCDSENDCGDGS--DEGDFCSEKTCAYFQFHAIV-----LGSNLTNPTDLALDPT---SGLMFVAD----SNQILRTNM 428 (485)
Q Consensus 363 ~~~~~~~~y~~d~--~~I~~~~~~~c~~g~~~~~l-----~~~~~~~p~~iavD~~---~~~lywtd----~~~I~r~~~ 428 (485)
+.++ +.+|.+.. ++|.+.+.+. |....+. ...+..-|.+||++|. .++||++. ..+|.|+.+
T Consensus 39 ~~pd-G~llVter~~G~I~~v~~~~---g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~ 114 (347)
T 3das_A 39 PLPG-GDLLVSSRDEATITRVDAKT---GRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLY 114 (347)
T ss_dssp ECTT-SCEEEEETTTCEEEEECTTT---CCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEB
T ss_pred EcCC-CcEEEEEecCCEEEEEECCC---CcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEe
Confidence 3444 45777766 3676665430 3322221 1244667889999994 78898853 578999999
Q ss_pred CCC--------CcEEEEe----CCCcccceEEEeCCCCeEEEEe-------------CCCCcEEEEEccCC--------C
Q psy4900 429 DGT--------MAMSIVS----EAAYKASGVALDINAKRLFWCD-------------NLLDYIETVDYEGK--------N 475 (485)
Q Consensus 429 dG~--------~~~~i~~----~~~~~p~glavD~~~~~lYW~D-------------~~~~~I~~~~~dG~--------~ 475 (485)
++. ..++|+. ...+++..|++++ .++||++- ...++|.|++.||+ .
T Consensus 115 ~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~ 193 (347)
T 3das_A 115 DEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPG 193 (347)
T ss_dssp CTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTT
T ss_pred CCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCC
Confidence 872 3566664 2356678899996 56999994 23589999999998 6
Q ss_pred eEEEecCCCC
Q psy4900 476 RFLILRGSQN 485 (485)
Q Consensus 476 r~~~~~~~~~ 485 (485)
.+++..+++|
T Consensus 194 ~~i~a~G~RN 203 (347)
T 3das_A 194 SPVYSYGHRN 203 (347)
T ss_dssp CCEEEBCCSB
T ss_pred CeEEeeCCCC
Confidence 6777778776
No 131
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1
Probab=97.22 E-value=8.4e-05 Score=51.81 Aligned_cols=33 Identities=24% Similarity=0.669 Sum_probs=29.1
Q ss_pred CCccccccCCCCCCeeeCCCCceeeCCCCCCCC
Q psy4900 182 LNCEFTCQASPTGGVCQCPEGQKVANDSRTCLL 214 (485)
Q Consensus 182 ~~C~~~C~n~~~~~~C~C~~G~~l~~~~~~C~d 214 (485)
.+|++.|.|++|+|+|.|++||.+..++++|.+
T Consensus 20 ~~C~~~C~n~~Gsy~C~C~~Gy~~~~d~~~C~~ 52 (53)
T 1apq_A 20 PQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQA 52 (53)
T ss_dssp CTTSSEEEEETTEEEEECSTTCEECTTSSCEEC
T ss_pred CCCCCEeECCCCCeEEECCCCCeECCCCCccCC
Confidence 357789999999999999999999888888864
No 132
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=97.21 E-value=0.0013 Score=64.59 Aligned_cols=76 Identities=12% Similarity=0.132 Sum_probs=59.0
Q ss_pred CCCCCccEEecCCCCeEEEeC-C------CcEEEEEcCCCC-cEEEEeC-C----CcccceEEEeCCCCeEEEEeC---C
Q psy4900 399 NLTNPTDLALDPTSGLMFVAD-S------NQILRTNMDGTM-AMSIVSE-A----AYKASGVALDINAKRLFWCDN---L 462 (485)
Q Consensus 399 ~~~~p~~iavD~~~~~lywtd-~------~~I~r~~~dG~~-~~~i~~~-~----~~~p~glavD~~~~~lYW~D~---~ 462 (485)
.+..|.+|++|+. |+|||+| . ++|.+.++.... .+++... . ...|++|+||+..+++|.+|. .
T Consensus 65 ~~~~p~gv~~d~~-g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 65 TFDTVLGIKSDGN-GIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCSCEEEEEECSS-SEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred ceeEeeEEEEcCC-CcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 4788999999987 8999999 3 699999987433 3333321 1 246799999988899999999 7
Q ss_pred CCcEEEEEccCCC
Q psy4900 463 LDYIETVDYEGKN 475 (485)
Q Consensus 463 ~~~I~~~~~dG~~ 475 (485)
.+.|.+.+++...
T Consensus 144 ~~~i~v~d~~~g~ 156 (343)
T 2qe8_A 144 KAALIRVDLQTGL 156 (343)
T ss_dssp GCEEEEEETTTCC
T ss_pred CCeEEEEECCCCC
Confidence 8899999987443
No 133
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.21 E-value=0.00028 Score=69.94 Aligned_cols=92 Identities=13% Similarity=0.133 Sum_probs=66.6
Q ss_pred eEEEEecCCCCCCccEEecCCCCeEEEeC-CCcEEEEEcCCCCcEEEE------eCCCcccceEEEeCC---CCeEEEEe
Q psy4900 391 FHAIVLGSNLTNPTDLALDPTSGLMFVAD-SNQILRTNMDGTMAMSIV------SEAAYKASGVALDIN---AKRLFWCD 460 (485)
Q Consensus 391 ~~~~l~~~~~~~p~~iavD~~~~~lywtd-~~~I~r~~~dG~~~~~i~------~~~~~~p~glavD~~---~~~lYW~D 460 (485)
+...++...+..|++|+++|..++||.++ ..+|.+...+|...+++. .....-|.|||+++. .++||+++
T Consensus 8 ~~~~~va~~l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~ 87 (353)
T 2g8s_A 8 VNVEVLQDKLDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSY 87 (353)
T ss_dssp SEEEEEEEEESSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEE
T ss_pred cEEEEEECCCCCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEE
Confidence 45556667899999999999743399999 789999988775432221 123446789999986 89999998
Q ss_pred CC-------CCcEEEEEccCC-----CeEEEecC
Q psy4900 461 NL-------LDYIETVDYEGK-----NRFLILRG 482 (485)
Q Consensus 461 ~~-------~~~I~~~~~dG~-----~r~~~~~~ 482 (485)
.. ..+|.+.++++. .+++|+.+
T Consensus 88 ~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~ 121 (353)
T 2g8s_A 88 SEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQ 121 (353)
T ss_dssp EEECSSSCEEEEEEEEEECTTSSBEEEEEEEEEC
T ss_pred eCCCCCCCceeEEEEEEECCCCCCCCceEEEEEE
Confidence 65 457999988754 35556543
No 134
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=97.20 E-value=0.0018 Score=61.60 Aligned_cols=97 Identities=20% Similarity=0.213 Sum_probs=69.9
Q ss_pred CCccCCCCC--Ccccccc-CcccccceEEEEec---CCCCCCccEEecCCCCeEEEeC-------------------CCc
Q psy4900 368 ENDCGDGSD--EGDFCSE-KTCAYFQFHAIVLG---SNLTNPTDLALDPTSGLMFVAD-------------------SNQ 422 (485)
Q Consensus 368 ~~~y~~d~~--~I~~~~~-~~c~~g~~~~~l~~---~~~~~p~~iavD~~~~~lywtd-------------------~~~ 422 (485)
+++|+++.. .|.+.+. + |.....+.. ..+..|.+|++|+. |.||++| ...
T Consensus 80 g~l~v~~~~~~~i~~~d~~~----g~~~~~~~~~~~~~~~~~~~i~~d~~-G~l~vtd~~~g~~~~~~~~~~~~~~~~~~ 154 (296)
T 3e5z_A 80 GHLIACSHGLRRLERQREPG----GEWESIADSFEGKKLNSPNDVCLAPD-GSLWFSDPTYGIDKPEEGYGGEMELPGRW 154 (296)
T ss_dssp CCEEEEETTTTEEEEECSTT----CCEEEEECEETTEECCCCCCEEECTT-SCEEEEECSHHHHCGGGSSCCCCCSSSCE
T ss_pred CcEEEEecCCCeEEEEcCCC----CcEEEEeeccCCCCCCCCCCEEECCC-CCEEEECCccccccccccccccccCCCcE
Confidence 456666543 6767776 4 655433211 12467899999985 7899975 247
Q ss_pred EEEEEcCCCCcEEEEeCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEcc
Q psy4900 423 ILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYE 472 (485)
Q Consensus 423 I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~d 472 (485)
|++.+.+|. ...+...+..|+||++++..+.| |++...++|.+.+++
T Consensus 155 l~~~~~~g~--~~~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~ 201 (296)
T 3e5z_A 155 VFRLAPDGT--LSAPIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLN 201 (296)
T ss_dssp EEEECTTSC--EEEEECCCSSEEEEEECTTSCEE-EEETTTTEEEEEEEC
T ss_pred EEEECCCCC--EEEeecCCCCCccEEECCCCCEE-EEeCCCCeEEEEEEC
Confidence 999888844 34445678899999999888888 999999999999986
No 135
>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*
Probab=97.19 E-value=0.00034 Score=59.19 Aligned_cols=65 Identities=26% Similarity=0.607 Sum_probs=46.9
Q ss_pred ccccCCCCCCeeeCCCCceeeCCCCCCC-CcchhhhccccccccccccceeheeheeeeeeecccCCCCCCCCCCCCCCC
Q psy4900 186 FTCQASPTGGVCQCPEGQKVANDSRTCL-LYMKNNLKQAVRSSTVSSHVKLVLLEVYVNVLKVRKLPTTAEPQSPNPCGS 264 (485)
Q Consensus 186 ~~C~n~~~~~~C~C~~G~~l~~~~~~C~-d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~C~~ 264 (485)
..|.+++++|+|.|++||. +..|. ++++ |.
T Consensus 19 g~C~~~~g~~~C~C~~Gy~----G~~C~~~~~~--------------------------------------------C~- 49 (135)
T 2vj3_A 19 GKCINTLGSFECQCLQGYT----GPRCEIDVNE--------------------------------------------CV- 49 (135)
T ss_dssp CEEEECSSSEEEECCTTEE----STTSCEECCT--------------------------------------------TT-
T ss_pred CEeECCCCCEEEECCCCCc----CCcccccCcc--------------------------------------------CC-
Confidence 4799999999999999996 34664 5554 54
Q ss_pred CCCCcc--ccccccccCCCCCCccccCCCCccccCCCCCCCC--CCCCC
Q psy4900 265 NNGGCE--HMCIITRASGNALGYKCACDIGYRLSVNGNNCNQ--PTCAP 309 (485)
Q Consensus 265 ~~g~C~--~~C~n~~~~~~~g~~~C~C~~Gy~l~~d~~~C~~--~~C~~ 309 (485)
...|. ..|++++ ++|+|.|++||. +..|.. ++|..
T Consensus 50 -~~~C~~~~~C~~~~-----g~~~C~C~~G~~----G~~C~~~~~~C~~ 88 (135)
T 2vj3_A 50 -SNPCQNDATCLDQI-----GEFQCICMPGYE----GVHCEVNTDECAS 88 (135)
T ss_dssp -TCCCCSSCEEEECS-----SCEEEECCTTEE----SSSSCEECCTTTT
T ss_pred -CCCCCCCCEEeCCC-----CCceeeCCCCCc----CCcceecCCcccC
Confidence 22343 5788888 999999999996 456652 45543
No 136
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.18 E-value=0.0012 Score=63.55 Aligned_cols=74 Identities=23% Similarity=0.204 Sum_probs=54.4
Q ss_pred CCCccEEecCCCCeEEEeC--CCcEEEEEcCCCCcEEEEeCCCcccceEEEeCCCCeEEEEeCCCC--cEEEEEccCCCe
Q psy4900 401 TNPTDLALDPTSGLMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLD--YIETVDYEGKNR 476 (485)
Q Consensus 401 ~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~~lYW~D~~~~--~I~~~~~dG~~r 476 (485)
..|.+|++|+ .|.|||+| .++|.+.+.+|.. ..++. .-..|.||++|.. ++||.+|...+ +|.+.+......
T Consensus 32 ~~pegia~~~-~g~lyv~d~~~~~I~~~d~~g~~-~~~~~-~~~~p~gia~~~d-G~l~vad~~~~~~~v~~~d~~~g~~ 107 (306)
T 2p4o_A 32 TFLENLASAP-DGTIFVTNHEVGEIVSITPDGNQ-QIHAT-VEGKVSGLAFTSN-GDLVATGWNADSIPVVSLVKSDGTV 107 (306)
T ss_dssp CCEEEEEECT-TSCEEEEETTTTEEEEECTTCCE-EEEEE-CSSEEEEEEECTT-SCEEEEEECTTSCEEEEEECTTSCE
T ss_pred CCcceEEECC-CCCEEEEeCCCCeEEEECCCCce-EEEEe-CCCCceeEEEcCC-CcEEEEeccCCcceEEEEcCCCCeE
Confidence 6799999999 57899999 6899999999854 33333 2357999999965 56999997654 477766443333
Q ss_pred EE
Q psy4900 477 FL 478 (485)
Q Consensus 477 ~~ 478 (485)
++
T Consensus 108 ~~ 109 (306)
T 2p4o_A 108 ET 109 (306)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 137
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=97.18 E-value=0.0012 Score=63.18 Aligned_cols=108 Identities=10% Similarity=-0.072 Sum_probs=76.5
Q ss_pred ccccCCCCccCCCCC--CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeCCCcEEEEEcCCCCcEEEEeC
Q psy4900 362 TWKCDSENDCGDGSD--EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVADSNQILRTNMDGTMAMSIVSE 439 (485)
Q Consensus 362 ~~~~~~~~~y~~d~~--~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd~~~I~r~~~dG~~~~~i~~~ 439 (485)
.|.++.+.+||++.. +|.+.+.+ +....++. ....|.+|++++.. .||.+....|.+.+.++...+.+...
T Consensus 19 ~w~~~~~~l~~~d~~~~~i~~~d~~----~~~~~~~~--~~~~~~~i~~~~dG-~l~v~~~~~l~~~d~~~g~~~~~~~~ 91 (297)
T 3g4e_A 19 VWEEVSNSLLFVDIPAKKVCRWDSF----TKQVQRVT--MDAPVSSVALRQSG-GYVATIGTKFCALNWKEQSAVVLATV 91 (297)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETT----TCCEEEEE--CSSCEEEEEEBTTS-SEEEEETTEEEEEETTTTEEEEEEEC
T ss_pred eEECCCCEEEEEECCCCEEEEEECC----CCcEEEEe--CCCceEEEEECCCC-CEEEEECCeEEEEECCCCcEEEEEec
Confidence 567777899998865 77777777 54443332 23568999999874 56666678999999986655666543
Q ss_pred ----CCcccceEEEeCCCCeEEEEeC-----------CCCcEEEEEccCCCeE
Q psy4900 440 ----AAYKASGVALDINAKRLFWCDN-----------LLDYIETVDYEGKNRF 477 (485)
Q Consensus 440 ----~~~~p~glavD~~~~~lYW~D~-----------~~~~I~~~~~dG~~r~ 477 (485)
....|++|++|. .++||+++. ..+.|++.+.+|+.+.
T Consensus 92 ~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~ 143 (297)
T 3g4e_A 92 DNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK 143 (297)
T ss_dssp CTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE
T ss_pred CCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEE
Confidence 245689999996 567888874 3357888888775443
No 138
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=97.15 E-value=0.0013 Score=63.23 Aligned_cols=84 Identities=20% Similarity=0.207 Sum_probs=65.4
Q ss_pred cceEEEEecCCCCCCccEEecCCCCeEEEeC--CCcEEEEEcCCCCcEEEEeCCCcccceEEEeCCCCeEEEEeCCCCcE
Q psy4900 389 FQFHAIVLGSNLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYI 466 (485)
Q Consensus 389 g~~~~~l~~~~~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I 466 (485)
+.....| ..+...+.|++.++..+.|||++ ..+|++.+.+|. ..++......|+||++|. .++||+++...+.|
T Consensus 34 ~~~~~~l-~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~--~~~~~~~~~~~~gl~~d~-dG~l~v~~~~~~~v 109 (305)
T 3dr2_A 34 DARLLTL-YDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGT--VDVLLDATAFTNGNAVDA-QQRLVHCEHGRRAI 109 (305)
T ss_dssp TCCCEEE-ECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSC--EEEEEESCSCEEEEEECT-TSCEEEEETTTTEE
T ss_pred CCceEEE-ecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCC--EEEEeCCCCccceeeECC-CCCEEEEECCCCEE
Confidence 3333344 46788899999999988899999 689999998765 333444556799999996 56799999888899
Q ss_pred EEEEccCCCe
Q psy4900 467 ETVDYEGKNR 476 (485)
Q Consensus 467 ~~~~~dG~~r 476 (485)
.+.+.+|+.+
T Consensus 110 ~~~~~~g~~~ 119 (305)
T 3dr2_A 110 TRSDADGQAH 119 (305)
T ss_dssp EEECTTSCEE
T ss_pred EEECCCCCEE
Confidence 9999987643
No 139
>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Probab=97.12 E-value=0.00021 Score=61.31 Aligned_cols=66 Identities=24% Similarity=0.568 Sum_probs=44.5
Q ss_pred ecCCCCCCCCCcccCCCcccCCCCCCCCCccccCcccCCCC--CCccccc-cCCCCCCeeeCCCCceeeCCCCCCCCcch
Q psy4900 141 LCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEETVCCDCSL--LNCEFTC-QASPTGGVCQCPEGQKVANDSRTCLLYMK 217 (485)
Q Consensus 141 ~C~~g~~~~~~~Ci~~~~~Cdg~~dC~d~sDe~~~C~~C~~--~~C~~~C-~n~~~~~~C~C~~G~~l~~~~~~C~d~~e 217 (485)
.|.+..++|.+.|.+... | ..|.+. || |.. .+|.+.| .+++++|+|.|++||.+..+++.|.++.+
T Consensus 61 ~C~~~~~~y~C~C~~G~~---G-~~C~~~-de------C~~~~~~C~~~C~~n~~g~y~C~C~~Gy~l~~dG~~C~~~~~ 129 (146)
T 1x7a_L 61 LCKDDINSYECWCQVGFE---G-KNCELD-AT------CNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPAVP 129 (146)
T ss_dssp EEEECSSCEEEECCSSEE---S-TTTCEE-CC------TTSGGGSCSSBCCCCSSSCCCCBCCTTEEECTTSSSEEECSS
T ss_pred EeECCCCCEEEecCCCCc---C-CcCCCC-cc------ccCCCCCCcCCCCCCCCCCEEeEcCCCcEeCCCCCcCCCCCC
Confidence 455555555556655421 1 223332 22 433 3577799 99999999999999999888999988766
No 140
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.04 E-value=0.0015 Score=66.97 Aligned_cols=117 Identities=7% Similarity=0.150 Sum_probs=77.1
Q ss_pred ccCCCCccCCCCC--CccccccCcccccceEEEE-ecCCC------CCCccEEecCC---CCeEEEeCC-----------
Q psy4900 364 KCDSENDCGDGSD--EGDFCSEKTCAYFQFHAIV-LGSNL------TNPTDLALDPT---SGLMFVADS----------- 420 (485)
Q Consensus 364 ~~~~~~~y~~d~~--~I~~~~~~~c~~g~~~~~l-~~~~~------~~p~~iavD~~---~~~lywtd~----------- 420 (485)
.++ +++|.++.. +|.+.+... |....++ +...+ .-+.+||++|. .++||++..
T Consensus 35 ~pd-G~l~V~e~~gg~I~~~~~~~---g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~ 110 (454)
T 1cru_A 35 GPD-NQIWLTERATGKILRVNPES---GSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKEL 110 (454)
T ss_dssp CTT-SCEEEEETTTCEEEEECTTT---CCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCS
T ss_pred cCC-CcEEEEEcCCCEEEEEECCC---CcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCcccc
Confidence 344 457776655 466555420 4433222 22222 23448999997 899999982
Q ss_pred ---CcEEEEEcCCC-----CcEEEEe----CCCcccceEEEeCCCCeEEEEeCC--------------------------
Q psy4900 421 ---NQILRTNMDGT-----MAMSIVS----EAAYKASGVALDINAKRLFWCDNL-------------------------- 462 (485)
Q Consensus 421 ---~~I~r~~~dG~-----~~~~i~~----~~~~~p~glavD~~~~~lYW~D~~-------------------------- 462 (485)
.+|.|+.+++. .+++|+. ...+.+.+|++++ .++||++-..
T Consensus 111 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~~~a 189 (454)
T 1cru_A 111 PNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQELNG 189 (454)
T ss_dssp CEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECCTTTTSGGGTTSCCCTTCCCCHHHHHT
T ss_pred ccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECCCCCCCccccccccccccccccccccc
Confidence 37999998753 3455654 2357799999996 5689998321
Q ss_pred ------CCcEEEEEccCC-----------CeEEEecCCCC
Q psy4900 463 ------LDYIETVDYEGK-----------NRFLILRGSQN 485 (485)
Q Consensus 463 ------~~~I~~~~~dG~-----------~r~~~~~~~~~ 485 (485)
.++|.|++.||+ ..+++..+++|
T Consensus 190 q~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RN 229 (454)
T 1cru_A 190 KDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRN 229 (454)
T ss_dssp TCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSE
T ss_pred cCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCC
Confidence 478999999998 55666677765
No 141
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.00 E-value=0.0016 Score=66.72 Aligned_cols=92 Identities=18% Similarity=0.307 Sum_probs=65.0
Q ss_pred cceEEEEecCCCCCCccEEecCCCCeEEEeC-C-CcEEEEEcCCCCcEEEEe-CC-------CcccceEEEeCC---CCe
Q psy4900 389 FQFHAIVLGSNLTNPTDLALDPTSGLMFVAD-S-NQILRTNMDGTMAMSIVS-EA-------AYKASGVALDIN---AKR 455 (485)
Q Consensus 389 g~~~~~l~~~~~~~p~~iavD~~~~~lywtd-~-~~I~r~~~dG~~~~~i~~-~~-------~~~p~glavD~~---~~~ 455 (485)
..+...++..+|..|.+|+++|. |.||.++ . .+|.+...+.....++.. .. ..-+.|||+++. .++
T Consensus 15 ~gf~~~~~a~~l~~P~~~a~~pd-G~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~ 93 (454)
T 1cru_A 15 ENFDKKVILSNLNKPHALLWGPD-NQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPY 93 (454)
T ss_dssp TTSCEEEEECCCSSEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCE
T ss_pred CCeEEEEEECCCCCceEEEEcCC-CcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCE
Confidence 34566667788999999999987 7899999 3 479999875322333332 11 223459999986 899
Q ss_pred EEEEeCC------------CCcEEEEEccCC-----CeEEEec
Q psy4900 456 LFWCDNL------------LDYIETVDYEGK-----NRFLILR 481 (485)
Q Consensus 456 lYW~D~~------------~~~I~~~~~dG~-----~r~~~~~ 481 (485)
||++++. ..+|.+..+++. .+++|+.
T Consensus 94 lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~ 136 (454)
T 1cru_A 94 IYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLA 136 (454)
T ss_dssp EEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEE
T ss_pred EEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEE
Confidence 9999864 358999998753 3556664
No 142
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.98 E-value=0.0023 Score=62.94 Aligned_cols=81 Identities=17% Similarity=0.170 Sum_probs=61.3
Q ss_pred EEEEecCCCCCCccEEecCCCCeEEEeC--CCcEEEEEcCCCCcEEEEe------CCCcccceEEEeCC---CCeEEEEe
Q psy4900 392 HAIVLGSNLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTMAMSIVS------EAAYKASGVALDIN---AKRLFWCD 460 (485)
Q Consensus 392 ~~~l~~~~~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~~~~i~~------~~~~~p~glavD~~---~~~lYW~D 460 (485)
...++..+|..|.+||+.|. |.||.++ ..+|.+...++.....+.. .+..-|.|||+++. ++.||++.
T Consensus 23 ~~~~va~gL~~P~~ia~~pd-G~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~y 101 (347)
T 3das_A 23 VLRTVATGLNSPWGLAPLPG-GDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYF 101 (347)
T ss_dssp EEEEEECCCSSEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEE
T ss_pred eeEEeecCCCCceEEEEcCC-CcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEE
Confidence 34566789999999999986 6799998 5889999876443333321 34566899999984 78899865
Q ss_pred C--CCCcEEEEEccC
Q psy4900 461 N--LLDYIETVDYEG 473 (485)
Q Consensus 461 ~--~~~~I~~~~~dG 473 (485)
+ ..++|.+..+++
T Consensus 102 t~~~~~~v~R~~~~~ 116 (347)
T 3das_A 102 TSASDNRIVRMLYDE 116 (347)
T ss_dssp ECSSSEEEEEEEBCT
T ss_pred ecCCCCEEEEEEeCC
Confidence 4 457899999987
No 143
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Probab=96.95 E-value=0.0021 Score=54.63 Aligned_cols=101 Identities=29% Similarity=0.740 Sum_probs=56.5
Q ss_pred CCCCCcc--ccccCCC--CCCeeeCCCCceeeCCCCCCCCcchhhhccccccccccccceeheeheeeeeeecccCCCCC
Q psy4900 179 CSLLNCE--FTCQASP--TGGVCQCPEGQKVANDSRTCLLYMKNNLKQAVRSSTVSSHVKLVLLEVYVNVLKVRKLPTTA 254 (485)
Q Consensus 179 C~~~~C~--~~C~n~~--~~~~C~C~~G~~l~~~~~~C~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (485)
|...+|. ..|.++. ++|+|.|++||. +..|....+.... ..
T Consensus 3 C~~~pC~~~g~C~~~~~~g~~~C~C~~G~~----G~~C~~~~~~~~~-------------------------------~~ 47 (143)
T 4d90_A 3 CDPNPCENGGICLPGLADGSFSCECPDGFT----DPNCSSVVEVASD-------------------------------EE 47 (143)
T ss_dssp CCSCCCGGGCEEEC-----CCEEECCTTCC----TTTTCSCCCCTTT-------------------------------TT
T ss_pred CCCCcCCCCCEeeCCCCCCCEEeECCCCCC----CCCCccCcccccc-------------------------------cc
Confidence 4444453 4788765 689999999995 5567654431100 00
Q ss_pred CCCCCCCCCCCCCCcc--cccc-------ccccCCCCCCccccCCCCccccCCCCCCC-C-CCCCCceEEcCC-CCcc--
Q psy4900 255 EPQSPNPCGSNNGGCE--HMCI-------ITRASGNALGYKCACDIGYRLSVNGNNCN-Q-PTCAPGEFQCAS-GRCV-- 320 (485)
Q Consensus 255 e~~~~~~C~~~~g~C~--~~C~-------n~~~~~~~g~~~C~C~~Gy~l~~d~~~C~-~-~~C~~~~~~c~~-g~ci-- 320 (485)
.....++|. ...|. ..|+ +++ ++|+|.|++||. +..|. + ++|... .|.+ +.|+
T Consensus 48 ~c~~~~~C~--~~~C~~~g~C~~~~~~~~~~~-----~~~~C~C~~G~~----G~~C~~~i~~C~~~--~C~~~~~C~~~ 114 (143)
T 4d90_A 48 EPTSAGPCT--PNPCHNGGTCEISEAYRGDTF-----IGYVCKCPRGFN----GIHCQHNINECEVE--PCKNGGICTDL 114 (143)
T ss_dssp SCCCCCTTS--SCCCCTTCEEEECCCEETTEE-----CCEEEECCTTEE----STTSCEECCTTTTC--CSCTTCEEEEE
T ss_pred ccccCCcCC--CCCCCCCCEecCCCccccCCC-----CCeEeECcCCCc----CCCcccCCCcCCCC--CCCCCCEeECC
Confidence 111122253 22343 3566 666 899999999994 67886 3 667643 2543 3443
Q ss_pred cCceeec
Q psy4900 321 PSTFKCD 327 (485)
Q Consensus 321 ~~~~~cd 327 (485)
...++|.
T Consensus 115 ~g~~~C~ 121 (143)
T 4d90_A 115 VANYSCE 121 (143)
T ss_dssp TTEEEEE
T ss_pred CCCeEeE
Confidence 4455664
No 144
>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*
Probab=96.92 E-value=0.00064 Score=55.61 Aligned_cols=71 Identities=24% Similarity=0.404 Sum_probs=47.8
Q ss_pred ceecCCCCCCCCCcccCCCcccCCCCCCCCCccccCcccCCC--CCCccccccCCCCCCeeeCCCCceeeCCCCCCCCcc
Q psy4900 139 KFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEETVCCDCS--LLNCEFTCQASPTGGVCQCPEGQKVANDSRTCLLYM 216 (485)
Q Consensus 139 ~~~C~~g~~~~~~~Ci~~~~~Cdg~~dC~d~sDe~~~C~~C~--~~~C~~~C~n~~~~~~C~C~~G~~l~~~~~~C~d~~ 216 (485)
...|.+..++|...|.+... |. .|.+..+. + +|. ...|++.|.|++++|+|.|++||.+..+++.|.+..
T Consensus 25 ~g~C~~~~~~y~C~C~~G~~---G~-~C~~~~~~-~---~C~~~~~~C~~~C~n~~g~y~C~C~~G~~~~~~g~~C~~~~ 96 (114)
T 1aut_L 25 HGTCIDGIGSFSCDCRSGWE---GR-FCQREVSF-L---NCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAV 96 (114)
T ss_dssp SEEECCCSSCCCEEECTTEE---ST-TSCEECCS-S---SSSSGGGGCSSEEEECSSSEEEECCTTEEECTTSSCEEECS
T ss_pred cCCCCCCCCCcEeeCCCCCc---CC-CcCcCCcC-C---cCcCCCCCCCCEeECCCCCEEeECCCCeeECCCCCccCcCc
Confidence 45677776777667766421 11 24432110 1 144 235777999999999999999999988899998765
Q ss_pred h
Q psy4900 217 K 217 (485)
Q Consensus 217 e 217 (485)
+
T Consensus 97 ~ 97 (114)
T 1aut_L 97 K 97 (114)
T ss_dssp S
T ss_pred c
Confidence 5
No 145
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A
Probab=96.92 E-value=0.00044 Score=52.97 Aligned_cols=58 Identities=36% Similarity=0.907 Sum_probs=37.9
Q ss_pred CCCCCCCccc-cccccccCCCCCCccccCCCCccccCCCCCCCC-CCCCCceEEcCCCCcc--cCceeecC
Q psy4900 262 CGSNNGGCEH-MCIITRASGNALGYKCACDIGYRLSVNGNNCNQ-PTCAPGEFQCASGRCV--PSTFKCDA 328 (485)
Q Consensus 262 C~~~~g~C~~-~C~n~~~~~~~g~~~C~C~~Gy~l~~d~~~C~~-~~C~~~~~~c~~g~ci--~~~~~cd~ 328 (485)
|.. ...|.+ .|++++ ++|+|.|++||.+ +++.|++ ++|.. ...|.++.|+ .++++|..
T Consensus 8 C~~-~~~C~~g~C~n~~-----g~y~C~C~~Gy~~--~g~~C~dideC~~-~~~C~~~~C~n~~g~y~C~C 69 (82)
T 1emn_A 8 CKE-PDVCKHGQCINTD-----GSYRCECPFGYIL--AGNECVDTDECSV-GNPCGNGTCKNVIGGFECTC 69 (82)
T ss_dssp SSS-TTSCSSSEECCCS-----SCCCEECCTTEEE--ETTEEEECCGGGT-CCTTSSSCEEECSSSEEECC
T ss_pred CCC-CCCcCCCEEEecC-----CCEEEECCCCeEC--CCCccCCcccccC-CCCCCCCEeECCCCCEEeEC
Confidence 653 355654 799998 9999999999987 5677765 56652 1234444443 44566643
No 146
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=96.90 E-value=0.0026 Score=59.79 Aligned_cols=74 Identities=12% Similarity=0.196 Sum_probs=56.5
Q ss_pred CCCCCccEEecCCCCeEEEeC--CCcEEEEEcCCCCcEEEEeC--------CCcccceEEEeCCCCeEEEEeCCCCcEEE
Q psy4900 399 NLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTMAMSIVSE--------AAYKASGVALDINAKRLFWCDNLLDYIET 468 (485)
Q Consensus 399 ~~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~~~~i~~~--------~~~~p~glavD~~~~~lYW~D~~~~~I~~ 468 (485)
.+..+.+|++||.++.||... .+.|..++++|.-+..+--. .+.+|+|||+|. .++||.+- .-+.+++
T Consensus 171 ~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~-~G~lyIvs-E~n~~y~ 248 (255)
T 3qqz_A 171 TLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDA-SGNIYIVS-EPNRFYR 248 (255)
T ss_dssp CSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECT-TCCEEEEE-TTTEEEE
T ss_pred ccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECC-CCCEEEEc-CCceEEE
Confidence 366799999999999999888 78999999999854444322 256999999996 56899994 4568888
Q ss_pred EEccCC
Q psy4900 469 VDYEGK 474 (485)
Q Consensus 469 ~~~dG~ 474 (485)
....++
T Consensus 249 f~~~~~ 254 (255)
T 3qqz_A 249 FTPQSS 254 (255)
T ss_dssp EEC---
T ss_pred EEecCC
Confidence 876543
No 147
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=96.89 E-value=0.0015 Score=63.94 Aligned_cols=72 Identities=13% Similarity=0.167 Sum_probs=55.2
Q ss_pred CCccEEecCCCCeEEEeC--CCcEEEEEcC----CC--CcE-----EEEeCCCcccceEEEeCCCCeEEEEeCCCCcEEE
Q psy4900 402 NPTDLALDPTSGLMFVAD--SNQILRTNMD----GT--MAM-----SIVSEAAYKASGVALDINAKRLFWCDNLLDYIET 468 (485)
Q Consensus 402 ~p~~iavD~~~~~lywtd--~~~I~r~~~d----G~--~~~-----~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~ 468 (485)
.|.||+++|..+.||+++ ..+|+++..+ +. ..+ ..+ .....|.|||+|. .++||.+++..++|.+
T Consensus 196 ~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-g~~g~pdgia~d~-~G~l~va~~~~~~V~~ 273 (343)
T 2qe8_A 196 GVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERY-SEKPICDGISIDK-DHNIYVGDLAHSAIGV 273 (343)
T ss_dssp CEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE-EECCSCSCEEECT-TCCEEEEEGGGTEEEE
T ss_pred ccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEec-ccCCCCceEEECC-CCCEEEEccCCCeEEE
Confidence 478899999888999998 5689998864 21 110 111 2244899999996 5899999999999999
Q ss_pred EEc-cCCC
Q psy4900 469 VDY-EGKN 475 (485)
Q Consensus 469 ~~~-dG~~ 475 (485)
.+. +|+.
T Consensus 274 ~d~~~G~~ 281 (343)
T 2qe8_A 274 ITSADRAY 281 (343)
T ss_dssp EETTTTEE
T ss_pred EECCCCCE
Confidence 999 7764
No 148
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Probab=96.87 E-value=0.00026 Score=54.83 Aligned_cols=63 Identities=25% Similarity=0.727 Sum_probs=41.9
Q ss_pred CCCCCCCccc-cccccccCCCCCCccccCCCCccccC-CCCCCCC-CCCCCceEEcCCCCc--ccCceeecCC
Q psy4900 262 CGSNNGGCEH-MCIITRASGNALGYKCACDIGYRLSV-NGNNCNQ-PTCAPGEFQCASGRC--VPSTFKCDAE 329 (485)
Q Consensus 262 C~~~~g~C~~-~C~n~~~~~~~g~~~C~C~~Gy~l~~-d~~~C~~-~~C~~~~~~c~~g~c--i~~~~~cd~~ 329 (485)
|......|.+ .|+|++ ++|+|.|++||.+.. +++.|++ ++|......|.++.| .+++|+|...
T Consensus 6 C~~~~~~C~~g~C~n~~-----g~y~C~C~~Gy~~~~~~g~~C~dideC~~~~~~C~~~~C~n~~g~y~C~C~ 73 (86)
T 1lmj_A 6 CRISPDLCGRGQCVNTP-----GDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNTEGSYRCECP 73 (86)
T ss_dssp TTTCSSTTTTSCEEEET-----TEEEECCCSSEEECTTTSSSEEECCHHHHCSSTTTTSEEEEETTEEEEESC
T ss_pred ccCCCCCCCCCEEECCC-----CCEEeeCCCCcCccCCCCCccCCcccccCCCCcCCCCEeEcCCCCEEEECc
Confidence 7644455764 799999 999999999998753 4678876 566543333433443 4556777543
No 149
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.84 E-value=0.0041 Score=60.45 Aligned_cols=112 Identities=16% Similarity=0.103 Sum_probs=74.4
Q ss_pred cccCCCCccCCCC--CCccccccCcccccceEEEEecCCCC-------CCccEEe---cCCCCeEEE-eC----------
Q psy4900 363 WKCDSENDCGDGS--DEGDFCSEKTCAYFQFHAIVLGSNLT-------NPTDLAL---DPTSGLMFV-AD---------- 419 (485)
Q Consensus 363 ~~~~~~~~y~~d~--~~I~~~~~~~c~~g~~~~~l~~~~~~-------~p~~iav---D~~~~~lyw-td---------- 419 (485)
|....+.+|..+. .+|.+.+.+ +.....+...++. .|.||.+ |+. ++|+. ++
T Consensus 20 wd~~~g~~~vs~l~~g~V~~~~~~----~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 20 YDRTRQVFYQSNLYKGRIEVYNPK----TQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT----TCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTTTCTTSC
T ss_pred CcCCCCEEEEEeccCCEEEEEcCC----CCeEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEccccccccccc
Confidence 3333455666553 267666766 5433333334432 5689999 788 77776 44
Q ss_pred ----CCcEEEEEcC----CCCcEEEEeC------------CCcccceEEEeCCCCeEEEEeCCC-CcEEEEEccCCCeEE
Q psy4900 420 ----SNQILRTNMD----GTMAMSIVSE------------AAYKASGVALDINAKRLFWCDNLL-DYIETVDYEGKNRFL 478 (485)
Q Consensus 420 ----~~~I~r~~~d----G~~~~~i~~~------------~~~~p~glavD~~~~~lYW~D~~~-~~I~~~~~dG~~r~~ 478 (485)
...|.+.+++ |.....+-.. ....|+.|||| ..+++|.+|+.. +.|.+++.||+...+
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD-~~GnaYVt~s~~~~~I~rV~pdG~~~~~ 173 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQD-RDGNSYVAFALGMPAIARVSADGKTVST 173 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEEC-TTSCEEEEEEESSCEEEEECTTSCCEEE
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEEC-CCCCEEEeCCCCCCeEEEEeCCCCEEee
Confidence 2569999999 4333322211 12358999999 689999999999 999999999996665
Q ss_pred Ee
Q psy4900 479 IL 480 (485)
Q Consensus 479 ~~ 480 (485)
+.
T Consensus 174 ~~ 175 (334)
T 2p9w_A 174 FA 175 (334)
T ss_dssp EE
T ss_pred ee
Confidence 44
No 150
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=96.83 E-value=0.0098 Score=57.34 Aligned_cols=110 Identities=14% Similarity=0.061 Sum_probs=77.9
Q ss_pred ccccCCCCccCCCC---CCccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC-CCcEEEEEcCCCCcEEEE
Q psy4900 362 TWKCDSENDCGDGS---DEGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD-SNQILRTNMDGTMAMSIV 437 (485)
Q Consensus 362 ~~~~~~~~~y~~d~---~~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd-~~~I~r~~~dG~~~~~i~ 437 (485)
.+.++++.+|..+. ..|.+.++. .......+...-..|.+|+++|..++||.++ ...|...++........+
T Consensus 147 ~~s~dg~~l~~~~~~~~~~i~~~d~~----~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~ 222 (353)
T 3vgz_A 147 VADDATNTVYISGIGKESVIWVVDGG----NIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRK 222 (353)
T ss_dssp EEETTTTEEEEEEESSSCEEEEEETT----TTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEecCCCceEEEEcCC----CCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEE
Confidence 45567777887662 257777766 4333333432344599999999999999999 678888877654433333
Q ss_pred eC----CCcccceEEEeCCCCeEEEEeCCCCcEEEEEccCCC
Q psy4900 438 SE----AAYKASGVALDINAKRLFWCDNLLDYIETVDYEGKN 475 (485)
Q Consensus 438 ~~----~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG~~ 475 (485)
.. ....|.+|++++..++||.++...+.|.+.++....
T Consensus 223 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~ 264 (353)
T 3vgz_A 223 KLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGN 264 (353)
T ss_dssp ECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCC
T ss_pred EcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence 32 234577899999999999999888999999886444
No 151
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...
Probab=96.82 E-value=0.00022 Score=60.96 Aligned_cols=38 Identities=24% Similarity=0.497 Sum_probs=33.0
Q ss_pred CCCCccccccCCCC-CCeeeCCCCceeeCCCCCCCCcch
Q psy4900 180 SLLNCEFTCQASPT-GGVCQCPEGQKVANDSRTCLLYMK 217 (485)
Q Consensus 180 ~~~~C~~~C~n~~~-~~~C~C~~G~~l~~~~~~C~d~~e 217 (485)
....|.+.|.++++ +|+|.|++||.+..+++.|.++++
T Consensus 94 ~~~~C~~~C~~~~g~~y~C~C~~Gy~l~~dG~~C~~~~e 132 (142)
T 2c4f_L 94 ENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVE 132 (142)
T ss_dssp GGGGCSSEEECCTTSCCEEECCTTEEECTTSSCEEESSS
T ss_pred CCCCccCEeECCCCCCEEEECCCCceECCCCCCCCCCCc
Confidence 34567779999999 999999999999888999988776
No 152
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=96.76 E-value=0.0056 Score=59.00 Aligned_cols=106 Identities=15% Similarity=0.096 Sum_probs=73.0
Q ss_pred CCccCCCCC--CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC-C-----CcEEEEEcCCCCcEEEEeC
Q psy4900 368 ENDCGDGSD--EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD-S-----NQILRTNMDGTMAMSIVSE 439 (485)
Q Consensus 368 ~~~y~~d~~--~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd-~-----~~I~r~~~dG~~~~~i~~~ 439 (485)
+++||++.. .|.+.+.+ +.....+.......|.+|++|+. |.||++. . ..|.+.++++...+.++..
T Consensus 56 g~l~~~~~~~~~i~~~d~~----~~~~~~~~~~~~~~~~~i~~~~d-g~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 130 (333)
T 2dg1_A 56 GQLFLLDVFEGNIFKINPE----TKEIKRPFVSHKANPAAIKIHKD-GRLFVCYLGDFKSTGGIFAATENGDNLQDIIED 130 (333)
T ss_dssp SCEEEEETTTCEEEEECTT----TCCEEEEEECSSSSEEEEEECTT-SCEEEEECTTSSSCCEEEEECTTSCSCEEEECS
T ss_pred CCEEEEECCCCEEEEEeCC----CCcEEEEeeCCCCCcceEEECCC-CcEEEEeCCCCCCCceEEEEeCCCCEEEEEEcc
Confidence 458876543 67777766 44333333234567999999977 6788887 3 4899999998876655542
Q ss_pred --CCcccceEEEeCCCCeEEEEeCC------CCcEEEEEccCCCeEEE
Q psy4900 440 --AAYKASGVALDINAKRLFWCDNL------LDYIETVDYEGKNRFLI 479 (485)
Q Consensus 440 --~~~~p~glavD~~~~~lYW~D~~------~~~I~~~~~dG~~r~~~ 479 (485)
....|.+|++|+ .++||+++.. .+.|.+.+.++...+.+
T Consensus 131 ~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~ 177 (333)
T 2dg1_A 131 LSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI 177 (333)
T ss_dssp SSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEE
T ss_pred CccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEEEEe
Confidence 235689999996 5689998874 46788888876554443
No 153
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}
Probab=96.67 E-value=0.0023 Score=62.25 Aligned_cols=37 Identities=19% Similarity=0.565 Sum_probs=32.4
Q ss_pred CCccccccCCCCCCeeeCCCCceeeCCCCCCCCcchh
Q psy4900 182 LNCEFTCQASPTGGVCQCPEGQKVANDSRTCLLYMKN 218 (485)
Q Consensus 182 ~~C~~~C~n~~~~~~C~C~~G~~l~~~~~~C~d~~e~ 218 (485)
.+|.+.|.|++++|+|.|++||.+..+.+.|.+.+++
T Consensus 52 ~~C~~~C~~~~g~~~C~C~~g~~~~~~~~~C~~~~~c 88 (317)
T 3h5c_B 52 DGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQC 88 (317)
T ss_dssp TSCSSEEECCSSSCEEECCTTEECCTTSSCCEECSSC
T ss_pred CCCcCccccCCCeeEEecccccccccccccccccccc
Confidence 4677799999999999999999988888899887763
No 154
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Probab=96.62 E-value=0.00031 Score=63.11 Aligned_cols=68 Identities=26% Similarity=0.564 Sum_probs=33.0
Q ss_pred eecCCCCCCCCCcccCCCcccCCCCCCCCCc-cccCcccCCCC--CCccccccCCCCCCeeeCCCCceeeCCCCCCCCcc
Q psy4900 140 FLCPMGAAGGKPKCIPKAQVCDGRKDCEDNA-DEETVCCDCSL--LNCEFTCQASPTGGVCQCPEGQKVANDSRTCLLYM 216 (485)
Q Consensus 140 ~~C~~g~~~~~~~Ci~~~~~Cdg~~dC~d~s-De~~~C~~C~~--~~C~~~C~n~~~~~~C~C~~G~~l~~~~~~C~d~~ 216 (485)
..|.+..++|.+.|.+... | ..|.+.. |+ |.. .+|.+.|.+++++|.|.|++||.+..+++.|.++.
T Consensus 54 g~C~n~~g~y~C~C~~Gf~---G-~~Ce~~i~de------C~~~~~~C~~~C~n~~gsy~C~C~~Gy~l~~dG~~C~~~~ 123 (195)
T 1nfu_B 54 GKCKDGLGEYTCTCLEGFE---G-KNCELFTRKL------CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTG 123 (195)
T ss_dssp -------------------------------CCG------GGTGGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEESS
T ss_pred CEeECCCCCeeEeCCCCce---e-cccccccccc------ccCCCCCCCCEeECCCCCeEEECCCCceeCCCCCccccCC
Confidence 4576666667667766532 2 2344422 33 332 34777899999999999999999988899998775
Q ss_pred h
Q psy4900 217 K 217 (485)
Q Consensus 217 e 217 (485)
+
T Consensus 124 ~ 124 (195)
T 1nfu_B 124 P 124 (195)
T ss_dssp S
T ss_pred C
Confidence 4
No 155
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.58 E-value=0.0029 Score=62.57 Aligned_cols=72 Identities=14% Similarity=0.150 Sum_probs=56.5
Q ss_pred CCCCCCccEEecCCCCeE------EEeC-------------CCcEEEEEcCCCCcEEEEeCCCcccceEEEeCCCCeEEE
Q psy4900 398 SNLTNPTDLALDPTSGLM------FVAD-------------SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFW 458 (485)
Q Consensus 398 ~~~~~p~~iavD~~~~~l------ywtd-------------~~~I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~~lYW 458 (485)
..+..|..+++|+. |.+ |++| ..+|+|.+.+ ..+ ++..++..|+|||+++..+.||+
T Consensus 162 ~~~~~pND~~v~~~-G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~-~~~~~l~~pNGia~spDg~~lYv 237 (355)
T 3sre_A 162 KLLPSVNDIVAVGP-EHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVR-VVAEGFDFANGINISPDGKYVYI 237 (355)
T ss_dssp TTCSSEEEEEEEET-TEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCE-EEEEEESSEEEEEECTTSSEEEE
T ss_pred CCCCCCceEEEeCC-CCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEE-EeecCCcccCcceECCCCCEEEE
Confidence 44788999999986 564 4444 1358887652 333 44578999999999999999999
Q ss_pred EeCCCCcEEEEEccC
Q psy4900 459 CDNLLDYIETVDYEG 473 (485)
Q Consensus 459 ~D~~~~~I~~~~~dG 473 (485)
+|+..++|.+.++++
T Consensus 238 adt~~~~I~~~~~~~ 252 (355)
T 3sre_A 238 AELLAHKIHVYEKHA 252 (355)
T ss_dssp EEGGGTEEEEEEECT
T ss_pred EeCCCCeEEEEEECC
Confidence 999999999999974
No 156
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=96.56 E-value=0.019 Score=55.24 Aligned_cols=109 Identities=10% Similarity=0.070 Sum_probs=76.6
Q ss_pred ccccCCCCccCCCCC-CccccccCcccccceEEEEecC---CCCCCccEEecCCCCeEEEeC--CCcEEEEEcCCCCcEE
Q psy4900 362 TWKCDSENDCGDGSD-EGDFCSEKTCAYFQFHAIVLGS---NLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTMAMS 435 (485)
Q Consensus 362 ~~~~~~~~~y~~d~~-~I~~~~~~~c~~g~~~~~l~~~---~~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~~~~ 435 (485)
.+.++++.+|....+ .|.+.++.+ +.....+... ....|.+|+++|..++||.++ ...|...++.......
T Consensus 191 ~~s~dg~~l~~~~~~~~i~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 267 (353)
T 3vgz_A 191 ALDSEGKRLYTTNADGELITIDTAD---NKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILA 267 (353)
T ss_dssp EEETTTTEEEEECTTSEEEEEETTT---TEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred EECCCCCEEEEEcCCCeEEEEECCC---CeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 455677778877665 666666551 3333333221 233567799999999999998 5789999886544333
Q ss_pred EEeCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEccCCC
Q psy4900 436 IVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEGKN 475 (485)
Q Consensus 436 i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG~~ 475 (485)
.+. +..|.++++++..++||.++...+.|.+.++....
T Consensus 268 ~~~--~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~ 305 (353)
T 3vgz_A 268 KVA--APESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYK 305 (353)
T ss_dssp EEE--CSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred EEE--cCCCceEEECCCCCEEEEEECCCCeEEEEECCCCe
Confidence 333 45688999999999999999988999999886443
No 157
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Probab=96.55 E-value=0.00038 Score=58.84 Aligned_cols=68 Identities=26% Similarity=0.564 Sum_probs=32.6
Q ss_pred eecCCCCCCCCCcccCCCcccCCCCCCCCCc-cccCcccCCCC--CCccccccCCCCCCeeeCCCCceeeCCCCCCCCcc
Q psy4900 140 FLCPMGAAGGKPKCIPKAQVCDGRKDCEDNA-DEETVCCDCSL--LNCEFTCQASPTGGVCQCPEGQKVANDSRTCLLYM 216 (485)
Q Consensus 140 ~~C~~g~~~~~~~Ci~~~~~Cdg~~dC~d~s-De~~~C~~C~~--~~C~~~C~n~~~~~~C~C~~G~~l~~~~~~C~d~~ 216 (485)
..|.+..++|.+.|.+... | ..|.+.. |+ |.. .+|.+.|.+++++|.|.|++||.+..+++.|.++.
T Consensus 54 g~C~~~~~~y~C~C~~G~~---G-~~C~~~i~d~------C~~~~~~C~~~C~~~~g~y~C~C~~Gy~l~~~g~~C~~~~ 123 (134)
T 2vh0_B 54 GKCKDGLGEYTCTCLEGFE---G-KNCELFTRKL------CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTG 123 (134)
T ss_dssp -------------------------------CCG------GGTGGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEESS
T ss_pred CCcccCCCCEEeeCCCCcc---C-CccccCCCCc------cccCCCCCCCEeECCCCCEEEECCCCcEECCCCCccCcCC
Confidence 3466655566556655432 1 2344322 33 332 34667899999999999999999988899998766
Q ss_pred h
Q psy4900 217 K 217 (485)
Q Consensus 217 e 217 (485)
+
T Consensus 124 ~ 124 (134)
T 2vh0_B 124 P 124 (134)
T ss_dssp S
T ss_pred C
Confidence 5
No 158
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=96.43 E-value=0.0044 Score=58.97 Aligned_cols=96 Identities=15% Similarity=0.151 Sum_probs=66.4
Q ss_pred CccccccCcccccceEEEEecCCCCCCccEEec----CCCCeEEEeC--CCcEEEEEcCCCCc----EEEEeC--CC-cc
Q psy4900 377 EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALD----PTSGLMFVAD--SNQILRTNMDGTMA----MSIVSE--AA-YK 443 (485)
Q Consensus 377 ~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD----~~~~~lywtd--~~~I~r~~~dG~~~----~~i~~~--~~-~~ 443 (485)
.|.+.+.+ +..... ...+..|.+|+++ +..+.||+++ ..+|.+.++++... +++... .. ..
T Consensus 154 ~l~~~~~~----g~~~~~--~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~ 227 (314)
T 1pjx_A 154 SIYCFTTD----GQMIQV--DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGG 227 (314)
T ss_dssp EEEEECTT----SCEEEE--EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCE
T ss_pred eEEEECCC----CCEEEe--ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCC
Confidence 35555555 554332 2345678999999 8877899998 57899998863221 222221 12 57
Q ss_pred cceEEEeCCCCeEEEEeCCCCcEEEEEcc-CCCeEEE
Q psy4900 444 ASGVALDINAKRLFWCDNLLDYIETVDYE-GKNRFLI 479 (485)
Q Consensus 444 p~glavD~~~~~lYW~D~~~~~I~~~~~d-G~~r~~~ 479 (485)
|.+|++|. .++||.++...+.|.+.+.+ |....++
T Consensus 228 p~~i~~d~-~G~l~v~~~~~~~i~~~d~~~g~~~~~~ 263 (314)
T 1pjx_A 228 ADGMDFDE-DNNLLVANWGSSHIEVFGPDGGQPKMRI 263 (314)
T ss_dssp EEEEEEBT-TCCEEEEEETTTEEEEECTTCBSCSEEE
T ss_pred CCceEECC-CCCEEEEEcCCCEEEEEcCCCCcEeEEE
Confidence 99999995 67999999888899999988 7654443
No 159
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=96.42 E-value=0.012 Score=55.83 Aligned_cols=77 Identities=19% Similarity=0.314 Sum_probs=58.2
Q ss_pred ecCCCCCCccEEecCCCCeEEEe-------C--CCcEEEEEcCCCCcEEEEeC----CCcccceEEEeCCCCeEEEEeCC
Q psy4900 396 LGSNLTNPTDLALDPTSGLMFVA-------D--SNQILRTNMDGTMAMSIVSE----AAYKASGVALDINAKRLFWCDNL 462 (485)
Q Consensus 396 ~~~~~~~p~~iavD~~~~~lywt-------d--~~~I~r~~~dG~~~~~i~~~----~~~~p~glavD~~~~~lYW~D~~ 462 (485)
+...+..|.++++| ..|.|||+ + .+.|.+.++.....+.+... ....|.+|++|...++||+++..
T Consensus 13 ~~~~~~~~~~~~~~-~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~ 91 (314)
T 1pjx_A 13 VTEDIPGAEGPVFD-KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR 91 (314)
T ss_dssp EECCCTTCEEEEEC-TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT
T ss_pred hhccCCCccCceEC-CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC
Confidence 35788999999999 56799999 6 67899998765444443321 23579999999766899999875
Q ss_pred CCcEEEEEccCC
Q psy4900 463 LDYIETVDYEGK 474 (485)
Q Consensus 463 ~~~I~~~~~dG~ 474 (485)
. .|.+.+.+|+
T Consensus 92 ~-~l~~~d~~g~ 102 (314)
T 1pjx_A 92 L-GLLVVQTDGT 102 (314)
T ss_dssp T-EEEEEETTSC
T ss_pred C-CEEEEeCCCC
Confidence 4 7888888844
No 160
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=96.41 E-value=0.022 Score=54.73 Aligned_cols=82 Identities=18% Similarity=0.183 Sum_probs=63.1
Q ss_pred cCCCCCCccEEecCCCCeEEEeC--CCcEEEEEcCCCCcEEEEeCCCcccceEEEeCCCCeEEEEeCCC----CcEEEEE
Q psy4900 397 GSNLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLL----DYIETVD 470 (485)
Q Consensus 397 ~~~~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~~lYW~D~~~----~~I~~~~ 470 (485)
......|.++++|+. |.|||++ ...|.+.++++...+.+.......|.+|++|. .++||+++... +.|.+.+
T Consensus 41 ~~~~~~~~~~~~~~~-g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d 118 (333)
T 2dg1_A 41 SKKGLQLEGLNFDRQ-GQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAAT 118 (333)
T ss_dssp ESSCCCEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEEC
T ss_pred eccCccccCcEECCC-CCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEe
Confidence 356778999999975 7799987 67899999987665555544456799999995 46799988766 6899999
Q ss_pred ccCCCeEEEe
Q psy4900 471 YEGKNRFLIL 480 (485)
Q Consensus 471 ~dG~~r~~~~ 480 (485)
+++...+.++
T Consensus 119 ~~~~~~~~~~ 128 (333)
T 2dg1_A 119 ENGDNLQDII 128 (333)
T ss_dssp TTSCSCEEEE
T ss_pred CCCCEEEEEE
Confidence 9887765443
No 161
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=96.34 E-value=0.0092 Score=57.89 Aligned_cols=68 Identities=10% Similarity=0.286 Sum_probs=52.9
Q ss_pred CCCccEEecCCCCeEEEeCC--------CcEEEEEcCCCCcEEEEeCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEcc
Q psy4900 401 TNPTDLALDPTSGLMFVADS--------NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYE 472 (485)
Q Consensus 401 ~~p~~iavD~~~~~lywtd~--------~~I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~d 472 (485)
..|.+|++|+. |+||+++. ..|++.+ +|+- ..+...+..|++|++++..+.|||++...+.|.+.+++
T Consensus 134 ~~~~~i~~d~~-G~l~v~~~~~~~~~~~~~l~~~~-~g~~--~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~ 209 (326)
T 2ghs_A 134 NRSNDGRMHPS-GALWIGTMGRKAETGAGSIYHVA-KGKV--TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLD 209 (326)
T ss_dssp EEEEEEEECTT-SCEEEEEEETTCCTTCEEEEEEE-TTEE--EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred CCCCCEEECCC-CCEEEEeCCCcCCCCceEEEEEe-CCcE--EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcc
Confidence 35778999985 67888762 4788888 5542 22334566899999998888999999988999999986
No 162
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=96.24 E-value=0.016 Score=56.12 Aligned_cols=100 Identities=11% Similarity=-0.011 Sum_probs=70.8
Q ss_pred CCCccCCCCC--CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC--CCcEEEEEcCCCCcEEEEeCC--
Q psy4900 367 SENDCGDGSD--EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTMAMSIVSEA-- 440 (485)
Q Consensus 367 ~~~~y~~d~~--~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~~~~i~~~~-- 440 (485)
++++|..... .|.+.+..+ +....++ .....|.+|++++. ++||+++ ..+|.+.++........+...
T Consensus 53 ~~~lyv~~~~~~~v~viD~~t---~~~~~~i--~~~~~p~~i~~~~~-g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~ 126 (328)
T 3dsm_A 53 DGIGWIVVNNSHVIFAIDINT---FKEVGRI--TGFTSPRYIHFLSD-EKAYVTQIWDYRIFIINPKTYEITGYIECPDM 126 (328)
T ss_dssp TTEEEEEEGGGTEEEEEETTT---CCEEEEE--ECCSSEEEEEEEET-TEEEEEEBSCSEEEEEETTTTEEEEEEECTTC
T ss_pred CCEEEEEEcCCCEEEEEECcc---cEEEEEc--CCCCCCcEEEEeCC-CeEEEEECCCCeEEEEECCCCeEEEEEEcCCc
Confidence 4667766543 677766652 4444444 35688999999876 5999999 688999888754433233322
Q ss_pred ---CcccceEEEeCCCCeEEEEeCC-CCcEEEEEccCC
Q psy4900 441 ---AYKASGVALDINAKRLFWCDNL-LDYIETVDYEGK 474 (485)
Q Consensus 441 ---~~~p~glavD~~~~~lYW~D~~-~~~I~~~~~dG~ 474 (485)
...|.+|+++ .++||.++++ .++|.+.++...
T Consensus 127 ~~~~~~p~~i~~~--~~~lyv~~~~~~~~v~viD~~t~ 162 (328)
T 3dsm_A 127 DMESGSTEQMVQY--GKYVYVNCWSYQNRILKIDTETD 162 (328)
T ss_dssp CTTTCBCCCEEEE--TTEEEEEECTTCCEEEEEETTTT
T ss_pred cccCCCcceEEEE--CCEEEEEcCCCCCEEEEEECCCC
Confidence 2289999994 8999999985 789999988743
No 163
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=96.24 E-value=0.025 Score=53.03 Aligned_cols=77 Identities=12% Similarity=0.114 Sum_probs=60.8
Q ss_pred CCCCCCccEEecCCCCeEEEeC--CCcEEEEEcCCCCcEEEEeCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEccCCC
Q psy4900 398 SNLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEGKN 475 (485)
Q Consensus 398 ~~~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG~~ 475 (485)
.-..++.|||+||..+.||-.. .++|++.+++|.-.+.+-..+...+.|||++ ..+++|.++.+.++|.+..++...
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~-~~g~~~vs~E~~~~l~~~~v~~~~ 102 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYI-GDNQFVISDERDYAIYVISLTPNS 102 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEEEEEEC-STTEEEEEETTTTEEEEEEECTTC
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChHHeEEe-CCCEEEEEECCCCcEEEEEcCCCC
Confidence 4457899999999988898744 7899999999887666655667889999998 455666677777889888776544
No 164
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=96.20 E-value=0.018 Score=55.72 Aligned_cols=95 Identities=14% Similarity=0.193 Sum_probs=66.9
Q ss_pred CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC--CCcEEEEEcC---C-C--CcEEEEeC--CCcccce
Q psy4900 377 EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD--SNQILRTNMD---G-T--MAMSIVSE--AAYKASG 446 (485)
Q Consensus 377 ~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd--~~~I~r~~~d---G-~--~~~~i~~~--~~~~p~g 446 (485)
.|.+.+ + |..... ...+..|.+|++++..+.|||++ ..+|.+.+++ | . .++++... ....|.|
T Consensus 162 ~l~~~~-~----g~~~~~--~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~g 234 (326)
T 2ghs_A 162 SIYHVA-K----GKVTKL--FADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDG 234 (326)
T ss_dssp EEEEEE-T----TEEEEE--EEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEE
T ss_pred EEEEEe-C----CcEEEe--eCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCe
Confidence 455555 5 654432 24456789999999988999998 5789999986 4 2 23444432 3457999
Q ss_pred EEEeCCCCeEEEEeCCCCcEEEEEccCCCeEEE
Q psy4900 447 VALDINAKRLFWCDNLLDYIETVDYEGKNRFLI 479 (485)
Q Consensus 447 lavD~~~~~lYW~D~~~~~I~~~~~dG~~r~~~ 479 (485)
|++|. .++||.+....+.|.+.+.+|...+++
T Consensus 235 i~~d~-~G~lwva~~~~~~v~~~d~~g~~~~~i 266 (326)
T 2ghs_A 235 SVCDA-EGHIWNARWGEGAVDRYDTDGNHIARY 266 (326)
T ss_dssp EEECT-TSCEEEEEETTTEEEEECTTCCEEEEE
T ss_pred eEECC-CCCEEEEEeCCCEEEEECCCCCEEEEE
Confidence 99994 567888887778899998877654443
No 165
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*
Probab=96.19 E-value=0.0024 Score=71.13 Aligned_cols=34 Identities=38% Similarity=0.917 Sum_probs=32.0
Q ss_pred CcccCCCCcccCccccCCCCCCCCCCCCCCCCCC
Q psy4900 99 GQFKCANSLCIPVSYHCDGYRDCIDGSDETNCTS 132 (485)
Q Consensus 99 ~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDe~~C~~ 132 (485)
..|+|.+|+||+..|+|||.+||.|+|||.+|..
T Consensus 121 ~~F~C~~g~ci~~~~~c~g~~dC~d~sde~~C~~ 154 (913)
T 3t5o_A 121 NKFRCDSGRCIARKLECNGENDCGDNSDERDCGR 154 (913)
T ss_dssp SEEECTTSCEEEGGGSSSSSCCSSSSGGGTTCSS
T ss_pred cccccCCCceEccceecCCcccCCCccccccCCC
Confidence 5699999999999999999999999999999974
No 166
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A
Probab=96.17 E-value=0.001 Score=53.71 Aligned_cols=60 Identities=27% Similarity=0.564 Sum_probs=11.3
Q ss_pred ecCCCCCCCCCcccCCCc-----ccCCCCCCCCCccccCcccCCCCCCccccccCCCCCCeeeCCCCceeeCCCCCC
Q psy4900 141 LCPMGAAGGKPKCIPKAQ-----VCDGRKDCEDNADEETVCCDCSLLNCEFTCQASPTGGVCQCPEGQKVANDSRTC 212 (485)
Q Consensus 141 ~C~~g~~~~~~~Ci~~~~-----~Cdg~~dC~d~sDe~~~C~~C~~~~C~~~C~n~~~~~~C~C~~G~~l~~~~~~C 212 (485)
.|.+..++|.+.|.+... .|..+++|.. ..+|.+.|.|++++|+|.|++||.+..++++|
T Consensus 42 ~C~n~~g~y~C~C~~Gy~g~~g~~C~dideC~~------------~~~C~~~C~n~~gsy~C~C~~Gy~~~~d~~~C 106 (107)
T 2w2n_E 42 VCNDLKIGYECLCPDGFQLVAQRRCEDIDECQD------------PDTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 106 (107)
T ss_dssp EEECCSBSCEEECCTTCEEETTTEEEC--------------------------------------------------
T ss_pred EeEeCCCCeEEECCCCccccCCCccccccccCC------------CCCcCCeeecCCCCEEEECCCCceECCCCCcc
Confidence 455555555556665532 3433333321 13577899999999999999999987777776
No 167
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=96.16 E-value=0.061 Score=51.26 Aligned_cols=108 Identities=9% Similarity=0.078 Sum_probs=75.6
Q ss_pred ccccCCCCccCCCCC----CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC--CCc-EEEEEcCCCCcE
Q psy4900 362 TWKCDSENDCGDGSD----EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD--SNQ-ILRTNMDGTMAM 434 (485)
Q Consensus 362 ~~~~~~~~~y~~d~~----~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd--~~~-I~r~~~dG~~~~ 434 (485)
.+.+++..+|..... .|.+.++. .......+ ..-..|.+|+++|..++||.++ ... |....++.....
T Consensus 90 ~~s~dg~~l~~~~~~~~~~~i~v~d~~----~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~ 164 (331)
T 3u4y_A 90 DITPDDQFAVTVTGLNHPFNMQSYSFL----KNKFISTI-PIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVL 164 (331)
T ss_dssp EECTTSSEEEECCCSSSSCEEEEEETT----TTEEEEEE-ECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCE
T ss_pred EECCCCCEEEEecCCCCcccEEEEECC----CCCeEEEE-ECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcE
Confidence 355677777754444 57777766 33333333 2345689999999988899998 467 887777754432
Q ss_pred -----EEEeCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEccCCC
Q psy4900 435 -----SIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEGKN 475 (485)
Q Consensus 435 -----~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG~~ 475 (485)
.++ .....|.+|++++..++||.+....+.|.+.++....
T Consensus 165 ~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 209 (331)
T 3u4y_A 165 FDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPE 209 (331)
T ss_dssp EEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTT
T ss_pred eecCCccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence 222 3345699999999988999999989999999987443
No 168
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}
Probab=96.15 E-value=0.0021 Score=61.54 Aligned_cols=40 Identities=35% Similarity=0.959 Sum_probs=35.7
Q ss_pred CCCCCC-CCCccccccccccCCCCCCccccCCCCccccCCCCCCCC
Q psy4900 260 NPCGSN-NGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQ 304 (485)
Q Consensus 260 ~~C~~~-~g~C~~~C~n~~~~~~~g~~~C~C~~Gy~l~~d~~~C~~ 304 (485)
++|... ++.|+|.|.|+. ++|+|.|+.||.|..|+++|.+
T Consensus 3 ~eC~~~~~~~C~~~C~~~~-----~~~~C~C~~G~~l~~d~~sC~p 43 (283)
T 3f1s_B 3 NECHPERTDGCQHFCLPGQ-----ESYTCSCAQGYRLGEDHKQCVP 43 (283)
T ss_dssp CCCCSSCSSSCSSBCCCCT-----TSCCCBCCTTEEECTTSSCEEE
T ss_pred CccCCCCCCCCCCEeeCCC-----CCeEecCCCCcccCCCCCcccc
Confidence 348766 789999999999 9999999999999999999875
No 169
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.10 E-value=0.015 Score=56.48 Aligned_cols=70 Identities=21% Similarity=0.235 Sum_probs=57.3
Q ss_pred CCccEEecCCCCeEEEeC--C-CcEEEEEcCCCCcEEEEeCC-----CcccceEEEeCCCCeEEEEeCCCCcEEEEEccC
Q psy4900 402 NPTDLALDPTSGLMFVAD--S-NQILRTNMDGTMAMSIVSEA-----AYKASGVALDINAKRLFWCDNLLDYIETVDYEG 473 (485)
Q Consensus 402 ~p~~iavD~~~~~lywtd--~-~~I~r~~~dG~~~~~i~~~~-----~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG 473 (485)
.|.+|++|+. |++|.++ . +.|+|++.||+...++.... ..-++|||+++..+.|+-.+. .++|.+.++.-
T Consensus 138 ~~nDvavD~~-GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~ 215 (334)
T 2p9w_A 138 GVVQSAQDRD-GNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSK 215 (334)
T ss_dssp EEEEEEECTT-SCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSS
T ss_pred CCceeEECCC-CCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCC
Confidence 3778999975 9999999 7 89999999999655554221 223779999999999999998 99999998873
No 170
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.97 E-value=0.0056 Score=60.48 Aligned_cols=64 Identities=11% Similarity=0.189 Sum_probs=50.1
Q ss_pred EecCCCCCCccEEecCCCCeEEEeC--CCcEEEEEcCCCC----cEEEEeCCCcccceEEEeCCCCeEEEEe
Q psy4900 395 VLGSNLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTM----AMSIVSEAAYKASGVALDINAKRLFWCD 460 (485)
Q Consensus 395 l~~~~~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~----~~~i~~~~~~~p~glavD~~~~~lYW~D 460 (485)
++..++..|.|||+.|..+.||++| .++|++..+++.. ++++ . --..|.||+||..+++||.+.
T Consensus 215 ~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~-~~g~PDGi~vD~e~G~lwva~ 284 (355)
T 3sre_A 215 VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-S-FDTLVDNISVDPVTGDLWVGC 284 (355)
T ss_dssp EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-E-CSSEEEEEEECTTTCCEEEEE
T ss_pred EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-e-CCCCCceEEEeCCCCcEEEEe
Confidence 4457899999999999999999999 7899999998543 2333 2 246799999996568887744
No 171
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=95.78 E-value=0.054 Score=52.65 Aligned_cols=109 Identities=12% Similarity=0.122 Sum_probs=73.3
Q ss_pred ccccCCCCccCCCCC--CccccccCcccccc------eE-----EEEecCCCCCCccEEecCCCCeEEEeC--CCcEEEE
Q psy4900 362 TWKCDSENDCGDGSD--EGDFCSEKTCAYFQ------FH-----AIVLGSNLTNPTDLALDPTSGLMFVAD--SNQILRT 426 (485)
Q Consensus 362 ~~~~~~~~~y~~d~~--~I~~~~~~~c~~g~------~~-----~~l~~~~~~~p~~iavD~~~~~lywtd--~~~I~r~ 426 (485)
.+.|++..+|.++.. .|.+.+++. .+. .. ..+.......|++|+++|..++||.++ ...|...
T Consensus 161 ~~spdg~~l~~~~~~~~~v~v~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 238 (361)
T 3scy_A 161 RITPDGKYLLADDLGTDQIHKFNINP--NANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAF 238 (361)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECT--TCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEE
T ss_pred EECCCCCEEEEEeCCCCEEEEEEEcC--CCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEE
Confidence 456777778887653 555554430 021 11 222334456799999999988899988 6788888
Q ss_pred EcCCCCcEEEEe-----CCCcccceEEEeCCCCeEEEEeCC-CCcEEEEEcc
Q psy4900 427 NMDGTMAMSIVS-----EAAYKASGVALDINAKRLFWCDNL-LDYIETVDYE 472 (485)
Q Consensus 427 ~~dG~~~~~i~~-----~~~~~p~glavD~~~~~lYW~D~~-~~~I~~~~~d 472 (485)
+++....+.+.. .....|.+|++++..++||.++.. .+.|.+.+++
T Consensus 239 ~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 239 RYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD 290 (361)
T ss_dssp EEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred EecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence 887433222221 123457799999999999999988 7888888886
No 172
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=95.75 E-value=0.037 Score=52.80 Aligned_cols=104 Identities=9% Similarity=0.052 Sum_probs=70.5
Q ss_pred CCCccCCCCC--CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC--CCcEEEEEcCCCCc-EEEEeCCC
Q psy4900 367 SENDCGDGSD--EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTMA-MSIVSEAA 441 (485)
Q Consensus 367 ~~~~y~~d~~--~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~~-~~i~~~~~ 441 (485)
+..+|+++.. .|.+.++.+ +..... +......| +|+++|..++||.+. ..+|...++..... ...+. ..
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~---~~~~~~-~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~ 82 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDT---LEILNQ-ITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ-EG 82 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTT---CCEEEE-EECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEE-EC
T ss_pred CCEEEEEecCCCeEEEEeCcc---cceeee-EEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecc-cC
Confidence 3455665544 566666551 333333 33456667 999999988899998 57899999986654 33332 34
Q ss_pred cccce-EEEeCCCCeEEEEeCCC-C--cEEEEEccCCCeE
Q psy4900 442 YKASG-VALDINAKRLFWCDNLL-D--YIETVDYEGKNRF 477 (485)
Q Consensus 442 ~~p~g-lavD~~~~~lYW~D~~~-~--~I~~~~~dG~~r~ 477 (485)
..|.. |++++..++|| +.... + .|.+.+++.....
T Consensus 83 ~~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~ 121 (331)
T 3u4y_A 83 QSSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFI 121 (331)
T ss_dssp SSCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEE
T ss_pred CCCccceEECCCCCEEE-EecCCCCcccEEEEECCCCCeE
Confidence 56777 99999999999 54444 3 8999998765433
No 173
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=95.72 E-value=0.06 Score=53.40 Aligned_cols=116 Identities=9% Similarity=0.036 Sum_probs=78.7
Q ss_pred ccCCCCccCCCCC--CccccccCcccccceEEEEec------------CC-----CCCCccEEecCC----CCeEEEeC-
Q psy4900 364 KCDSENDCGDGSD--EGDFCSEKTCAYFQFHAIVLG------------SN-----LTNPTDLALDPT----SGLMFVAD- 419 (485)
Q Consensus 364 ~~~~~~~y~~d~~--~I~~~~~~~c~~g~~~~~l~~------------~~-----~~~p~~iavD~~----~~~lywtd- 419 (485)
.|.....|.+|+. .|.|.++.+ |+..+++-. .+ .....||||.|. .++|||.-
T Consensus 167 ~c~~~~aYItD~~~~gLIVydl~~---~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~pl 243 (381)
T 3q6k_A 167 DCSETFVYITNFLRGALFIYDHKK---QDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAG 243 (381)
T ss_dssp TSCSEEEEEEETTTTEEEEEETTT---TEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEES
T ss_pred CCCccEEEEEcCCCCcEEEEECCC---CcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEEC
Confidence 4556778888876 666776652 444443310 01 134567999987 78999999
Q ss_pred -CCcEEEEEcC----C---CCcEEEEeCC-CcccceEEEeCCCCeEEEEeCCCCcEEEEEccC-----CCeEEEecC
Q psy4900 420 -SNQILRTNMD----G---TMAMSIVSEA-AYKASGVALDINAKRLFWCDNLLDYIETVDYEG-----KNRFLILRG 482 (485)
Q Consensus 420 -~~~I~r~~~d----G---~~~~~i~~~~-~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG-----~~r~~~~~~ 482 (485)
..+++++... + ..-+.+-.++ .....++++|..++.||.++.....|..-+.++ .+..+|++.
T Consensus 244 ss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d 320 (381)
T 3q6k_A 244 SAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTS 320 (381)
T ss_dssp SCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEEC
T ss_pred CCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEEC
Confidence 5678888743 2 2223333333 345567899988999999999999999999988 345666654
No 174
>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=95.71 E-value=0.003 Score=55.47 Aligned_cols=40 Identities=33% Similarity=0.822 Sum_probs=33.2
Q ss_pred CCCCCCCCC---ccccccccccCCCCCCccccCCCCccccCCCCCCCC
Q psy4900 260 NPCGSNNGG---CEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQ 304 (485)
Q Consensus 260 ~~C~~~~g~---C~~~C~n~~~~~~~g~~~C~C~~Gy~l~~d~~~C~~ 304 (485)
++|....+. |++.|+|++ |+|+|.|++||.|..|+++|++
T Consensus 125 ~eC~~~~~~~~~C~~~C~n~~-----g~~~C~C~~Gy~l~~d~~~C~~ 167 (170)
T 1szb_A 125 DECQVAPGEAPTCDHHCHNHL-----GGFYCSCRAGYVLHRNKRTCSE 167 (170)
T ss_dssp CTTCCCTTSCCSSSSEEEEET-----TEEEEECCTTEEECTTSSCEEE
T ss_pred CcccCCCCCCCccCCccccCC-----CCEEEeCCCCcEECCCCCcccc
Confidence 347644443 999999999 9999999999999999998864
No 175
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=95.70 E-value=0.029 Score=54.24 Aligned_cols=111 Identities=11% Similarity=0.050 Sum_probs=71.0
Q ss_pred ccccCCCCccCCCCC--CccccccCcccccceEEE-EecCC------CCCCccEEecCCCCeEEEeC--CCcEEEEEcCC
Q psy4900 362 TWKCDSENDCGDGSD--EGDFCSEKTCAYFQFHAI-VLGSN------LTNPTDLALDPTSGLMFVAD--SNQILRTNMDG 430 (485)
Q Consensus 362 ~~~~~~~~~y~~d~~--~I~~~~~~~c~~g~~~~~-l~~~~------~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG 430 (485)
.+.+++..+|.++.. .|.+.+++. ..|..... .+... ...|.+|+++|..++||.++ ...|...+++.
T Consensus 193 ~~spdg~~l~v~~~~~~~v~v~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 193 VFSPDGQYAFLAGELSSQIASLKYDT-QTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEEET-TTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred EECCCCCEEEEEeCCCCEEEEEEecC-CCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence 466777778876443 555554440 00332211 11111 13478899999988999988 57788888763
Q ss_pred CCc-EEE--EeCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEccC
Q psy4900 431 TMA-MSI--VSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEG 473 (485)
Q Consensus 431 ~~~-~~i--~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG 473 (485)
... +.+ +......|.+|++++..++||.++...+.|.+..+|.
T Consensus 272 ~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 272 DGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp GGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence 322 222 2223457999999999999999999888888886653
No 176
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Probab=95.69 E-value=0.0075 Score=47.00 Aligned_cols=19 Identities=21% Similarity=0.315 Sum_probs=16.4
Q ss_pred ccccCCCCCCeeeCCCCce
Q psy4900 186 FTCQASPTGGVCQCPEGQK 204 (485)
Q Consensus 186 ~~C~n~~~~~~C~C~~G~~ 204 (485)
..|.|..++|+|.|++||.
T Consensus 23 ~pC~n~~~~y~C~C~~G~~ 41 (91)
T 1tpg_A 23 RPVLRSNRVEYCWCNSGRA 41 (91)
T ss_dssp EECSSSSCEEEEECSSSCC
T ss_pred CccccCCCCcEeECCCCCc
Confidence 4578888999999999995
No 177
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*
Probab=95.51 E-value=0.0064 Score=67.70 Aligned_cols=37 Identities=35% Similarity=0.942 Sum_probs=33.5
Q ss_pred CCCCCcEEecCCCCceecCCcccCCcCCCCCCCcCCCCCC
Q psy4900 11 KCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCPA 50 (485)
Q Consensus 11 ~C~~~~f~C~c~~g~ci~~~~~Cd~~~dC~d~sdE~~C~~ 50 (485)
.|. ..|+| .+|.||+..|+|||.+||.|+|||.+|..
T Consensus 118 ~C~-~~F~C--~~g~ci~~~~~c~g~~dC~d~sde~~C~~ 154 (913)
T 3t5o_A 118 DCK-NKFRC--DSGRCIARKLECNGENDCGDNSDERDCGR 154 (913)
T ss_dssp CCS-SEEEC--TTSCEEEGGGSSSSSCCSSSSGGGTTCSS
T ss_pred Ccc-ccccc--CCCceEccceecCCcccCCCccccccCCC
Confidence 464 67999 78999999999999999999999999975
No 178
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=95.28 E-value=0.079 Score=50.38 Aligned_cols=109 Identities=6% Similarity=0.033 Sum_probs=73.9
Q ss_pred ccccCCCCccCCCCC--CccccccCcccccceEE-EEecCCCCCCccEEecCCCCeEEEeC--CCcEEEEEcCCCCc-EE
Q psy4900 362 TWKCDSENDCGDGSD--EGDFCSEKTCAYFQFHA-IVLGSNLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTMA-MS 435 (485)
Q Consensus 362 ~~~~~~~~~y~~d~~--~I~~~~~~~c~~g~~~~-~l~~~~~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~~-~~ 435 (485)
.+.+++..+|.+... .|.+.+++ .|.... .........|.+|+++|...+||.++ ..+|...+++.... ..
T Consensus 90 ~~s~dg~~l~~~~~~~~~i~~~d~~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 166 (343)
T 1ri6_A 90 STDHQGQFVFVGSYNAGNVSVTRLE---DGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA 166 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEEE---TTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred EEcCCCCEEEEEecCCCeEEEEECC---CCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceee
Confidence 355666667776542 46655552 032221 11224456799999999988999997 67888888875232 21
Q ss_pred -----EEeCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEccC
Q psy4900 436 -----IVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEG 473 (485)
Q Consensus 436 -----i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG 473 (485)
+....-..|.+|++++..++||.++...+.|...+++.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~ 209 (343)
T 1ri6_A 167 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKD 209 (343)
T ss_dssp EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSC
T ss_pred ecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 12122347899999999999999998889999999864
No 179
>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=95.28 E-value=0.011 Score=43.73 Aligned_cols=36 Identities=22% Similarity=0.401 Sum_probs=25.7
Q ss_pred CCCCCCCcc--ccccccccCCCCCCcccc-CCCCccccCCCCCC
Q psy4900 262 CGSNNGGCE--HMCIITRASGNALGYKCA-CDIGYRLSVNGNNC 302 (485)
Q Consensus 262 C~~~~g~C~--~~C~n~~~~~~~g~~~C~-C~~Gy~l~~d~~~C 302 (485)
|......|. +.|+|++ |+|+|. +..||.+..++..+
T Consensus 6 C~~~~~~C~~~~~C~Nt~-----Gsy~C~~~~~g~~~~~~~~~~ 44 (71)
T 2kl7_A 6 CLTIPEACKGEMKCINHY-----GGYLCLPRSAAVINDLHGEGP 44 (71)
T ss_dssp TTCCCCSCTTEEEEEETT-----CCEEEEETTSCCCSCCSCSSC
T ss_pred ccCCCCCCCCCCEeECCC-----CCeEecccCCcccccccCCcc
Confidence 764445674 5799999 999997 55688766665544
No 180
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=95.16 E-value=0.17 Score=47.60 Aligned_cols=69 Identities=12% Similarity=0.123 Sum_probs=53.1
Q ss_pred CCCccEEecCCCCeEEEeC----CCcEEEEEcCC-CCcEEEEeCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEcc
Q psy4900 401 TNPTDLALDPTSGLMFVAD----SNQILRTNMDG-TMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYE 472 (485)
Q Consensus 401 ~~p~~iavD~~~~~lywtd----~~~I~r~~~dG-~~~~~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~d 472 (485)
..|.||++++. ++||.+. ..+|.+.++.- .-...+-......+.||+++ .++||++.+..+.|.+.+..
T Consensus 21 ~f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~ 94 (266)
T 2iwa_A 21 AFTQGLVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRR 94 (266)
T ss_dssp CCEEEEEECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETT
T ss_pred CCcccEEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECC
Confidence 45789999987 7999986 47899999974 33333333344466788877 78999999999999998876
No 181
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=95.15 E-value=0.081 Score=50.30 Aligned_cols=109 Identities=10% Similarity=0.106 Sum_probs=71.8
Q ss_pred ccccCCCCccCCCC--CCccccccCcccccceEE----EEecCCCCCCccEEecCCCCeEEEeC--CCcEEEEEcCCCC-
Q psy4900 362 TWKCDSENDCGDGS--DEGDFCSEKTCAYFQFHA----IVLGSNLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTM- 432 (485)
Q Consensus 362 ~~~~~~~~~y~~d~--~~I~~~~~~~c~~g~~~~----~l~~~~~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~- 432 (485)
.+.+++..+|..+. +.|.+.++.+ .+.... .+....-..|++|+++|...+||.+. ...|...+++...
T Consensus 135 ~~s~dg~~l~~~~~~~~~v~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g 212 (343)
T 1ri6_A 135 NISPDNRTLWVPALKQDRICLFTVSD--DGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHG 212 (343)
T ss_dssp EECTTSSEEEEEEGGGTEEEEEEECT--TSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTS
T ss_pred EECCCCCEEEEecCCCCEEEEEEecC--CCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCC
Confidence 45677777777652 2566655540 022221 12222335788999999988899987 6789999986422
Q ss_pred -cE--EEEe-C-----CCcccceEEEeCCCCeEEEEeCCCCcEEEEEcc
Q psy4900 433 -AM--SIVS-E-----AAYKASGVALDINAKRLFWCDNLLDYIETVDYE 472 (485)
Q Consensus 433 -~~--~i~~-~-----~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~d 472 (485)
.+ ..+. . ...+|.+|++++..++||.+....+.|.+.+++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 213 NIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp CCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred cEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence 11 1111 1 123566899999899999999888999998887
No 182
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=95.11 E-value=0.13 Score=50.28 Aligned_cols=109 Identities=16% Similarity=0.202 Sum_probs=77.6
Q ss_pred ccccCCCCccCCCC--CCccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC--CCcEEEEEcCCCCcEEEE
Q psy4900 362 TWKCDSENDCGDGS--DEGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTMAMSIV 437 (485)
Q Consensus 362 ~~~~~~~~~y~~d~--~~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~~~~i~ 437 (485)
.+.+++..+|.+.. +.|.+.++.+ +.....+... ..|.+|++.|...+||.+. ...|...++........+
T Consensus 38 ~~s~dg~~l~~~~~~d~~i~v~d~~~---~~~~~~~~~~--~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~ 112 (391)
T 1l0q_A 38 VISPDGTKVYVANAHSNDVSIIDTAT---NNVIATVPAG--SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV 112 (391)
T ss_dssp EECTTSSEEEEEEGGGTEEEEEETTT---TEEEEEEECS--SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEECCCCCeEEEEECCC---CeEEEEEECC--CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEE
Confidence 45566677776643 2666667641 4444444322 3788999999988999887 588999999865544444
Q ss_pred eCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEccCCCe
Q psy4900 438 SEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEGKNR 476 (485)
Q Consensus 438 ~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG~~r 476 (485)
. .-..|.+|++.+..++||.+....+.|...++.....
T Consensus 113 ~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~ 150 (391)
T 1l0q_A 113 K-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV 150 (391)
T ss_dssp E-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred e-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence 3 3346899999988899999998889999988865443
No 183
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=95.04 E-value=0.1 Score=50.17 Aligned_cols=74 Identities=20% Similarity=0.248 Sum_probs=57.9
Q ss_pred CCCCCCccEEecCCCCeEEEeCC----CcEEEEEcCCCCcEEEEe--CCCcccceEEEeCCCCeEEEEeCCCCcEEEEEc
Q psy4900 398 SNLTNPTDLALDPTSGLMFVADS----NQILRTNMDGTMAMSIVS--EAAYKASGVALDINAKRLFWCDNLLDYIETVDY 471 (485)
Q Consensus 398 ~~~~~p~~iavD~~~~~lywtd~----~~I~r~~~dG~~~~~i~~--~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~ 471 (485)
.....|.+|+++|. |+||.++. ..|...++++...+.+.. .....|.+|++++..++||.++...+.|.+.++
T Consensus 37 ~~~~~p~~~a~spd-g~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~ 115 (347)
T 3hfq_A 37 AATQNPTYLALSAK-DCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI 115 (347)
T ss_dssp EECSCCCCEEECTT-CEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred eccCCcceEEEccC-CeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 45688999999996 55998873 689999997655443332 246689999999999999999988888888877
Q ss_pred c
Q psy4900 472 E 472 (485)
Q Consensus 472 d 472 (485)
+
T Consensus 116 ~ 116 (347)
T 3hfq_A 116 A 116 (347)
T ss_dssp C
T ss_pred C
Confidence 5
No 184
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=95.03 E-value=0.2 Score=47.31 Aligned_cols=108 Identities=8% Similarity=-0.062 Sum_probs=72.7
Q ss_pred ccccCCCCccCCCCC--CccccccCcccccceEEEEecCCC----CCCccEEecCCCCeEEEeC-------------CCc
Q psy4900 362 TWKCDSENDCGDGSD--EGDFCSEKTCAYFQFHAIVLGSNL----TNPTDLALDPTSGLMFVAD-------------SNQ 422 (485)
Q Consensus 362 ~~~~~~~~~y~~d~~--~I~~~~~~~c~~g~~~~~l~~~~~----~~p~~iavD~~~~~lywtd-------------~~~ 422 (485)
.+.+++..+|.+... .|.+.++.+ +.....+-.... ..|.+|+++|..++||+++ ...
T Consensus 40 ~~s~dg~~l~v~~~~~~~v~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~ 116 (337)
T 1pby_B 40 MVAPGGRIAYATVNKSESLVKIDLVT---GETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTR 116 (337)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTT---CCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCE
T ss_pred EEcCCCCEEEEEeCCCCeEEEEECCC---CCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCce
Confidence 345666677776543 666666641 443333332221 2689999999988999994 478
Q ss_pred EEEEEcCCCCcEEEEeCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEccCCCe
Q psy4900 423 ILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEGKNR 476 (485)
Q Consensus 423 I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG~~r 476 (485)
|...++.+......+.. -..|.++++++..++||.+ .+.|.+.++.+...
T Consensus 117 i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~---~~~i~~~d~~~~~~ 166 (337)
T 1pby_B 117 VALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL---GRDLHVMDPEAGTL 166 (337)
T ss_dssp EEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE---SSSEEEEETTTTEE
T ss_pred EEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe---CCeEEEEECCCCcE
Confidence 99998876544333432 3468999999988999998 36788888875543
No 185
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=94.89 E-value=0.074 Score=50.10 Aligned_cols=106 Identities=15% Similarity=0.080 Sum_probs=70.8
Q ss_pred cCCCCccCCCCC-CccccccCcccccceEEEEecC----CCCCCccEEecCCCCeEEEeC--CCcEEEEEcCCCCc-EEE
Q psy4900 365 CDSENDCGDGSD-EGDFCSEKTCAYFQFHAIVLGS----NLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTMA-MSI 436 (485)
Q Consensus 365 ~~~~~~y~~d~~-~I~~~~~~~c~~g~~~~~l~~~----~~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~~-~~i 436 (485)
++++.+|.++.. .|.+.+..+ ......+... .+..|.+|++. .|+||-+. .+.|.++++..... ..|
T Consensus 114 ~Dg~~l~vs~gs~~l~viD~~t---~~v~~~I~Vg~~~~p~~~~nele~~--dg~lyvn~~~~~~V~vID~~tg~V~~~I 188 (266)
T 2iwa_A 114 TDGKILYGSDGTSILYEIDPHT---FKLIKKHNVKYNGHRVIRLNELEYI--NGEVWANIWQTDCIARISAKDGTLLGWI 188 (266)
T ss_dssp ECSSSEEEECSSSEEEEECTTT---CCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTSSEEEEEETTTCCEEEEE
T ss_pred ECCCEEEEECCCCeEEEEECCC---CcEEEEEEECCCCcccccceeEEEE--CCEEEEecCCCCeEEEEECCCCcEEEEE
Confidence 456778877643 666666541 2223333222 23356677766 68898777 68999999964433 333
Q ss_pred EeCCC------------cccceEEEeCCCCeEEEEeCCCCcEEEEEccCCC
Q psy4900 437 VSEAA------------YKASGVALDINAKRLFWCDNLLDYIETVDYEGKN 475 (485)
Q Consensus 437 ~~~~~------------~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG~~ 475 (485)
-..++ ..|+|||+|+.+++||.+-...++|.++++....
T Consensus 189 ~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 189 LLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp ECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred ECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 22222 4689999999999999999999999999887553
No 186
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=94.84 E-value=0.16 Score=49.52 Aligned_cols=110 Identities=14% Similarity=0.107 Sum_probs=77.8
Q ss_pred cccccCCCCccCCCCC--CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC--CCcEEEEEcCCCCcEEE
Q psy4900 361 STWKCDSENDCGDGSD--EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTMAMSI 436 (485)
Q Consensus 361 ~~~~~~~~~~y~~d~~--~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~~~~i 436 (485)
..+.+++..+|.+... .|.+.++. .......+. .-..|.+|++.|...+||.+. ...|...++........
T Consensus 79 ~~~spdg~~l~~~~~~~~~v~v~d~~----~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 153 (391)
T 1l0q_A 79 VAVSPDGKQVYVTNMASSTLSVIDTT----SNTVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT 153 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETT----TTEEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eEECCCCCEEEEEECCCCEEEEEECC----CCeEEEEEe-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 3456777777776543 67777766 433333332 344688999999988898887 67899988875544444
Q ss_pred EeCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEccCCCe
Q psy4900 437 VSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEGKNR 476 (485)
Q Consensus 437 ~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG~~r 476 (485)
+.. -..|.++++++..++||.+....+.|...++.....
T Consensus 154 ~~~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~ 192 (391)
T 1l0q_A 154 VSV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV 192 (391)
T ss_dssp EEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred Eec-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeE
Confidence 432 356899999998999999988888899888876543
No 187
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=94.77 E-value=0.13 Score=48.06 Aligned_cols=105 Identities=15% Similarity=0.125 Sum_probs=64.0
Q ss_pred cCCCCccCCCCC-CccccccCcccccceEEEEecCCCCCCcc-E-EecCCCCeEEEeC--CCcEEEEEcCCCC-cEEEEe
Q psy4900 365 CDSENDCGDGSD-EGDFCSEKTCAYFQFHAIVLGSNLTNPTD-L-ALDPTSGLMFVAD--SNQILRTNMDGTM-AMSIVS 438 (485)
Q Consensus 365 ~~~~~~y~~d~~-~I~~~~~~~c~~g~~~~~l~~~~~~~p~~-i-avD~~~~~lywtd--~~~I~r~~~dG~~-~~~i~~ 438 (485)
.++..+|.++.. +|.+.+..+ ......+....-..|.. | .+.+..|+||-.. ...|.+++..-.. ..+|-.
T Consensus 134 ~dg~~L~~SdGs~~i~~iDp~T---~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp~tG~V~~~Id~ 210 (262)
T 3nol_A 134 HNDQYLIMSDGTPVLRFLDPES---LTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKIVRIDPETGKVTGIIDL 210 (262)
T ss_dssp ECSSCEEECCSSSEEEEECTTT---CSEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEECTTTCBEEEEEEC
T ss_pred cCCCEEEEECCCCeEEEEcCCC---CeEEEEEEeccCCccccccceeEEECCEEEEEEccCCeEEEEECCCCcEEEEEEC
Confidence 345677777743 566665441 23333333221122321 1 2444578988766 6788888876333 333333
Q ss_pred CC-----------CcccceEEEeCCCCeEEEEeCCCCcEEEEEcc
Q psy4900 439 EA-----------AYKASGVALDINAKRLFWCDNLLDYIETVDYE 472 (485)
Q Consensus 439 ~~-----------~~~p~glavD~~~~~lYW~D~~~~~I~~~~~d 472 (485)
.+ ...|+|||+|+.+++||.|-..=.+++.+.+.
T Consensus 211 ~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev~~~ 255 (262)
T 3nol_A 211 NGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEITLT 255 (262)
T ss_dssp TTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred CcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEEEEEe
Confidence 22 24689999999999999998777888877764
No 188
>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=94.69 E-value=0.0076 Score=52.84 Aligned_cols=32 Identities=28% Similarity=0.668 Sum_probs=29.0
Q ss_pred ccccccCCCCCCeeeCCCCceeeCCCCCCCCc
Q psy4900 184 CEFTCQASPTGGVCQCPEGQKVANDSRTCLLY 215 (485)
Q Consensus 184 C~~~C~n~~~~~~C~C~~G~~l~~~~~~C~d~ 215 (485)
|++.|.|++++|.|.|++||.|..++++|.++
T Consensus 137 C~~~C~n~~g~~~C~C~~Gy~l~~d~~~C~~~ 168 (170)
T 1szb_A 137 CDHHCHNHLGGFYCSCRAGYVLHRNKRTCSEQ 168 (170)
T ss_dssp SSSEEEEETTEEEEECCTTEEECTTSSCEEEC
T ss_pred cCCccccCCCCEEEeCCCCcEECCCCCccccc
Confidence 77889999999999999999998889999764
No 189
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=94.63 E-value=0.11 Score=50.82 Aligned_cols=76 Identities=17% Similarity=0.219 Sum_probs=58.4
Q ss_pred CCCccEEecCCCCeEEEeC-CCcEEEEEcCCC---CcEEEEe---CCCc-ccceEEEeCCC---CeEEEEeCCCCcEEEE
Q psy4900 401 TNPTDLALDPTSGLMFVAD-SNQILRTNMDGT---MAMSIVS---EAAY-KASGVALDINA---KRLFWCDNLLDYIETV 469 (485)
Q Consensus 401 ~~p~~iavD~~~~~lywtd-~~~I~r~~~dG~---~~~~i~~---~~~~-~p~glavD~~~---~~lYW~D~~~~~I~~~ 469 (485)
..|.++++|+..++||.++ ...|++...+.. .++.|.. ..+. .|+||||.+.. ++||-++-+.++..+.
T Consensus 180 sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vy 259 (355)
T 3amr_A 180 SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIY 259 (355)
T ss_dssp SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEE
T ss_pred CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEE
Confidence 5799999999999999999 566999997633 2444433 2344 79999997554 5899999888999999
Q ss_pred EccCCCe
Q psy4900 470 DYEGKNR 476 (485)
Q Consensus 470 ~~dG~~r 476 (485)
+..++++
T Consensus 260 dr~~~~~ 266 (355)
T 3amr_A 260 DRQGKNK 266 (355)
T ss_dssp ESSTTCC
T ss_pred ECCCCCc
Confidence 8876553
No 190
>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=94.41 E-value=0.015 Score=50.26 Aligned_cols=39 Identities=31% Similarity=0.608 Sum_probs=32.4
Q ss_pred CCCCC-CCCccccccccccCCCCCCccccCCCCccccCCCCCCCC
Q psy4900 261 PCGSN-NGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQ 304 (485)
Q Consensus 261 ~C~~~-~g~C~~~C~n~~~~~~~g~~~C~C~~Gy~l~~d~~~C~~ 304 (485)
+|... .+.|++.|.|++ ++|+|.|..||.|..|+++|++
T Consensus 119 eC~~~~~~~C~~~C~n~~-----g~~~C~C~~Gy~l~~~~~~C~~ 158 (159)
T 1nzi_A 119 ECTDFVDVPCSHFCNNFI-----GGYFCSCPPEYFLHDDMKNCGV 158 (159)
T ss_dssp TTTC-CCCCSSSEEEEET-----TEEEEECCTTCEECTTSSCEEC
T ss_pred ccCCCCCCCCCCcccCcC-----CCEEEecCCCcEECCCCCcccc
Confidence 47632 357899999998 9999999999999999998864
No 191
>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=94.34 E-value=0.041 Score=40.53 Aligned_cols=13 Identities=23% Similarity=0.537 Sum_probs=10.8
Q ss_pred ccccCCCCCCeee
Q psy4900 186 FTCQASPTGGVCQ 198 (485)
Q Consensus 186 ~~C~n~~~~~~C~ 198 (485)
..|.|++|+|+|.
T Consensus 17 ~~C~Nt~Gsy~C~ 29 (71)
T 2kl7_A 17 MKCINHYGGYLCL 29 (71)
T ss_dssp EEEEETTCCEEEE
T ss_pred CEeECCCCCeEec
Confidence 5688888888888
No 192
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=94.20 E-value=0.28 Score=47.37 Aligned_cols=73 Identities=10% Similarity=0.186 Sum_probs=56.0
Q ss_pred CCccEEecCCCCeEEEeC--CCcEEEEEcCCCCc-------------EEEEeCCCcccceEEEeCCCCeEEEEeCCCCcE
Q psy4900 402 NPTDLALDPTSGLMFVAD--SNQILRTNMDGTMA-------------MSIVSEAAYKASGVALDINAKRLFWCDNLLDYI 466 (485)
Q Consensus 402 ~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~~-------------~~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I 466 (485)
.|.+|+++|..++||.++ ...|....++.... ..+....-..|.+|++++..++||.++...+.|
T Consensus 156 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v 235 (361)
T 3scy_A 156 HLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTV 235 (361)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEE
T ss_pred cceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeE
Confidence 347799999988899998 57788777775432 222333455699999999999999999888999
Q ss_pred EEEEccCC
Q psy4900 467 ETVDYEGK 474 (485)
Q Consensus 467 ~~~~~dG~ 474 (485)
.+.++++.
T Consensus 236 ~v~~~~~g 243 (361)
T 3scy_A 236 IAFRYADG 243 (361)
T ss_dssp EEEEEETT
T ss_pred EEEEecCC
Confidence 99988744
No 193
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=94.12 E-value=0.13 Score=51.88 Aligned_cols=104 Identities=14% Similarity=0.041 Sum_probs=68.1
Q ss_pred cCCCCccCCCC------CCccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC-----------CCcEEEEE
Q psy4900 365 CDSENDCGDGS------DEGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD-----------SNQILRTN 427 (485)
Q Consensus 365 ~~~~~~y~~d~------~~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd-----------~~~I~r~~ 427 (485)
+++..+|.++. +.|.+++..+ ++...++-.. ..| +|+++|..++||.++ .+.|...+
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t---~~vv~~I~vG--~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD 155 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGST---GRILGMTDGG--FLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFD 155 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTT---TEEEEEEEEC--SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCC---CEEEEEEECC--CCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEE
Confidence 34466777655 3566666651 3333333322 358 999999999999997 23566665
Q ss_pred cCCCC-cEEEEeC------CCcccceEEEeCCCCeEEEEeCC-CCcEEEEEccCC
Q psy4900 428 MDGTM-AMSIVSE------AAYKASGVALDINAKRLFWCDNL-LDYIETVDYEGK 474 (485)
Q Consensus 428 ~dG~~-~~~i~~~------~~~~p~glavD~~~~~lYW~D~~-~~~I~~~~~dG~ 474 (485)
..... ...|... ....|.+|+|++..++||.+... .+.|.++++...
T Consensus 156 ~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~ 210 (426)
T 3c75_H 156 PVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGK 210 (426)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTT
T ss_pred CCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCC
Confidence 55332 2223221 12479999999999999999865 678888877654
No 194
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=93.77 E-value=0.089 Score=53.80 Aligned_cols=85 Identities=11% Similarity=0.069 Sum_probs=59.6
Q ss_pred cceEEEEecCCCCCCccEEecCCC-CeEEEeC-CCcEEEEEcCCCC-cEEEEe------CC-----CcccceEEEeCC--
Q psy4900 389 FQFHAIVLGSNLTNPTDLALDPTS-GLMFVAD-SNQILRTNMDGTM-AMSIVS------EA-----AYKASGVALDIN-- 452 (485)
Q Consensus 389 g~~~~~l~~~~~~~p~~iavD~~~-~~lywtd-~~~I~r~~~dG~~-~~~i~~------~~-----~~~p~glavD~~-- 452 (485)
+.+...+++.+|..|.+||+.|.. ++||.++ ..+|.++..+|.. ..+|.. .+ ..-+.|||+++.
T Consensus 2 ~gf~v~~va~gL~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~ 81 (463)
T 2wg3_C 2 NCFCIQEVVSGLRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYK 81 (463)
T ss_dssp CCEEEEEEEEEESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHH
T ss_pred CceEEEEeccCCCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCc
Confidence 445666777899999999999986 3799999 7889999877753 222221 11 234678999975
Q ss_pred -CCeEEEEeCCC------------CcEEEEEccC
Q psy4900 453 -AKRLFWCDNLL------------DYIETVDYEG 473 (485)
Q Consensus 453 -~~~lYW~D~~~------------~~I~~~~~dG 473 (485)
+++||++-+.. .+|.+..++.
T Consensus 82 ~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~ 115 (463)
T 2wg3_C 82 KNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSR 115 (463)
T ss_dssp HHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCT
T ss_pred CCCEEEEEEeCCCCCcccCCcccceEEEEEEEcC
Confidence 67888875421 3788888863
No 195
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=93.46 E-value=0.33 Score=46.15 Aligned_cols=103 Identities=9% Similarity=0.015 Sum_probs=68.5
Q ss_pred CCccCCCCC--CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC--CCcEEEEEcCCCCcEEEEeC-C--
Q psy4900 368 ENDCGDGSD--EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTMAMSIVSE-A-- 440 (485)
Q Consensus 368 ~~~y~~d~~--~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~~~~i~~~-~-- 440 (485)
+++|.+... .|.+.++.+ +.....+-......|.++++.|..++||.+. ...|...+++.......+.. .
T Consensus 11 ~~~~v~~~~~~~v~~~d~~~---~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~ 87 (349)
T 1jmx_B 11 HEYMIVTNYPNNLHVVDVAS---DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP 87 (349)
T ss_dssp CEEEEEEETTTEEEEEETTT---TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCST
T ss_pred CEEEEEeCCCCeEEEEECCC---CcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccc
Confidence 444544332 566666551 4444344333333699999999888898887 67899999875443333332 1
Q ss_pred ---CcccceEEEeCCCCeEEEEeCC-----------CCcEEEEEccC
Q psy4900 441 ---AYKASGVALDINAKRLFWCDNL-----------LDYIETVDYEG 473 (485)
Q Consensus 441 ---~~~p~glavD~~~~~lYW~D~~-----------~~~I~~~~~dG 473 (485)
...|.+|++++..++||.+... .+.|.+.++..
T Consensus 88 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 134 (349)
T 1jmx_B 88 GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD 134 (349)
T ss_dssp TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG
T ss_pred ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCC
Confidence 2348999999999999998854 57898888875
No 196
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=93.43 E-value=0.32 Score=45.03 Aligned_cols=105 Identities=15% Similarity=0.096 Sum_probs=63.8
Q ss_pred CCCCccCCCCC-CccccccCcccccceEEEEecCCCCCCcc--EEecCCCCeEEEeC--CCcEEEEEcCCCC-cEEEEeC
Q psy4900 366 DSENDCGDGSD-EGDFCSEKTCAYFQFHAIVLGSNLTNPTD--LALDPTSGLMFVAD--SNQILRTNMDGTM-AMSIVSE 439 (485)
Q Consensus 366 ~~~~~y~~d~~-~I~~~~~~~c~~g~~~~~l~~~~~~~p~~--iavD~~~~~lywtd--~~~I~r~~~dG~~-~~~i~~~ 439 (485)
++..+|.++.. .|.+.+..+ ......+-...-..|.. -.+++..|+||-.. .+.|.+++..-.. ..+|-..
T Consensus 113 dg~~L~vSdgs~~l~~iDp~t---~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~ 189 (243)
T 3mbr_X 113 DDSHLYMSDGTAVIRKLDPDT---LQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSRIARIDPASGKVVAWIDLQ 189 (243)
T ss_dssp CSSCEEEECSSSEEEEECTTT---CCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTEEEEECTTTCBEEEEEECG
T ss_pred CCCEEEEECCCCeEEEEeCCC---CeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCeEEEEECCCCCEEEEEECC
Confidence 45677777654 566555441 22222322221111211 13556688988665 6778888776333 3333322
Q ss_pred ------------CCcccceEEEeCCCCeEEEEeCCCCcEEEEEccC
Q psy4900 440 ------------AAYKASGVALDINAKRLFWCDNLLDYIETVDYEG 473 (485)
Q Consensus 440 ------------~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG 473 (485)
....|+|||+|+.+++||.|-..=.+++.+.+..
T Consensus 190 ~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v~~~~ 235 (243)
T 3mbr_X 190 ALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEIRLTP 235 (243)
T ss_dssp GGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEEEECC
T ss_pred cCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEEEEec
Confidence 2247899999999999999987778888887754
No 197
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=93.36 E-value=0.16 Score=53.16 Aligned_cols=96 Identities=15% Similarity=0.011 Sum_probs=64.9
Q ss_pred ccCCCCccCCCCC--CccccccCcccccce-EEEEecCCCCCCccEEe-c-CCCCeEEEeCCCcE---------------
Q psy4900 364 KCDSENDCGDGSD--EGDFCSEKTCAYFQF-HAIVLGSNLTNPTDLAL-D-PTSGLMFVADSNQI--------------- 423 (485)
Q Consensus 364 ~~~~~~~y~~d~~--~I~~~~~~~c~~g~~-~~~l~~~~~~~p~~iav-D-~~~~~lywtd~~~I--------------- 423 (485)
.++++.+|..++. +|.+++++ .-. ..++-..+...|.||++ . |..++||-+....|
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~----t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~ 173 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCD----VMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANY 173 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETT----TTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGE
T ss_pred CcCCCEEEEEcCCCCEEEEEECC----CceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccccccc
Confidence 4567889998876 68888887 333 22332345567999998 4 89999999942211
Q ss_pred --EEEEcCCCCcEEEEeCCC-cccceEEEeCCCCeEEEEeCCC
Q psy4900 424 --LRTNMDGTMAMSIVSEAA-YKASGVALDINAKRLFWCDNLL 463 (485)
Q Consensus 424 --~r~~~dG~~~~~i~~~~~-~~p~glavD~~~~~lYW~D~~~ 463 (485)
...-+|...++++..-.+ ..|.++++++..+++|.+....
T Consensus 174 ~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~s 216 (595)
T 1fwx_A 174 VNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNS 216 (595)
T ss_dssp EEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCT
T ss_pred CceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCc
Confidence 223344445555443222 3799999999999999999765
No 198
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=93.30 E-value=0.8 Score=43.03 Aligned_cols=74 Identities=14% Similarity=0.174 Sum_probs=55.4
Q ss_pred CCccEEecCCCCeEEEeC--CCcEEEEEcCCCCcEEEEeCCC-----cccceEEEeCCCCeEEEEeC-----------CC
Q psy4900 402 NPTDLALDPTSGLMFVAD--SNQILRTNMDGTMAMSIVSEAA-----YKASGVALDINAKRLFWCDN-----------LL 463 (485)
Q Consensus 402 ~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~~~~i~~~~~-----~~p~glavD~~~~~lYW~D~-----------~~ 463 (485)
.|.+|+++|..++||.+. ...|...++........+.... ..|.++++++..++||+++. ..
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence 599999999988999988 5789999987544333332211 26899999998999999962 24
Q ss_pred CcEEEEEccCCC
Q psy4900 464 DYIETVDYEGKN 475 (485)
Q Consensus 464 ~~I~~~~~dG~~ 475 (485)
+.|.+.++.+..
T Consensus 115 ~~i~v~d~~~~~ 126 (337)
T 1pby_B 115 TRVALYDAETLS 126 (337)
T ss_dssp CEEEEEETTTTE
T ss_pred ceEEEEECCCCc
Confidence 788888887544
No 199
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=93.22 E-value=0.2 Score=49.59 Aligned_cols=63 Identities=17% Similarity=0.272 Sum_probs=50.3
Q ss_pred CCccEEecCCCCeEEEeC--CCcEEEEEcCC-----CCcEEEEe-CCCcccceEEEeCCCCeEEEEeCCCCc
Q psy4900 402 NPTDLALDPTSGLMFVAD--SNQILRTNMDG-----TMAMSIVS-EAAYKASGVALDINAKRLFWCDNLLDY 465 (485)
Q Consensus 402 ~p~~iavD~~~~~lywtd--~~~I~r~~~dG-----~~~~~i~~-~~~~~p~glavD~~~~~lYW~D~~~~~ 465 (485)
...++++|+.+|.||+++ ...|.+-+.++ .+..+|+. ..+.||.+|+|| ..+.||.+....+.
T Consensus 276 ~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~-~~g~Lwv~sn~l~~ 346 (381)
T 3q6k_A 276 DAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVD-SKGGLWFMSNGFPP 346 (381)
T ss_dssp CEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEEC-TTSCEEEEECSCCS
T ss_pred CcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEEC-CCCeEEEEECcchH
Confidence 344689998899999999 78899999988 34466654 458899999999 46789998877654
No 200
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=93.21 E-value=0.38 Score=47.56 Aligned_cols=106 Identities=11% Similarity=0.117 Sum_probs=73.9
Q ss_pred ccccCCCCccCCCCC--CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeCC----------------CcE
Q psy4900 362 TWKCDSENDCGDGSD--EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVADS----------------NQI 423 (485)
Q Consensus 362 ~~~~~~~~~y~~d~~--~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd~----------------~~I 423 (485)
.+.+++..+|.+... .|.+.++. .......+ .....|.+|++.|..++||.+.. +.|
T Consensus 309 ~~~~~g~~l~~~~~~~~~v~v~d~~----~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v 383 (433)
T 3bws_A 309 VSGNTENKIYVSDMCCSKIEVYDLK----EKKVQKSI-PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKV 383 (433)
T ss_dssp EECSSTTEEEEEETTTTEEEEEETT----TTEEEEEE-ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEE
T ss_pred EECCCCCEEEEEecCCCEEEEEECC----CCcEEEEe-cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEE
Confidence 345666667776332 66666665 33333333 24466889999999888888872 278
Q ss_pred EEEEcCCCCcEEEEeCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEccC
Q psy4900 424 LRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEG 473 (485)
Q Consensus 424 ~r~~~dG~~~~~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG 473 (485)
+..++........+.. ...|.+|++++..+.||.+....+.|...++++
T Consensus 384 ~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 384 YVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred EEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 8888865444444433 457999999998999999988788999888875
No 201
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=93.01 E-value=1 Score=44.33 Aligned_cols=103 Identities=11% Similarity=-0.057 Sum_probs=66.0
Q ss_pred cCCCCccCCCC-C-----CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC-----------CCcEEEEE
Q psy4900 365 CDSENDCGDGS-D-----EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD-----------SNQILRTN 427 (485)
Q Consensus 365 ~~~~~~y~~d~-~-----~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd-----------~~~I~r~~ 427 (485)
++++.+|..+. . .|.+.+..+ +....++- .+ ..| +|++.|..++||.++ ...|...+
T Consensus 30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t---~~~~~~i~-~g-~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD 103 (373)
T 2mad_H 30 ADGRRSYINLPAHHSAIIQQWVLDAGS---GSILGHVN-GG-FLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFD 103 (373)
T ss_pred CCCCEEEEeCCcccCCccEEEEEECCC---CeEEEEec-CC-CCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEE
Confidence 45566777765 2 345566541 33333332 22 357 999999999999996 24577777
Q ss_pred cCCCC-cEEEEeC-C-----CcccceEEEeCCCCeEEEEeCC-CCcEEEEEccCC
Q psy4900 428 MDGTM-AMSIVSE-A-----AYKASGVALDINAKRLFWCDNL-LDYIETVDYEGK 474 (485)
Q Consensus 428 ~dG~~-~~~i~~~-~-----~~~p~glavD~~~~~lYW~D~~-~~~I~~~~~dG~ 474 (485)
..... ...|-.. . ...|.++++++..++||.+... .+.|.+.+ ...
T Consensus 104 ~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~ 157 (373)
T 2mad_H 104 PVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGG 157 (373)
T ss_pred CCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCC
Confidence 65222 1222111 0 2469999999999999999765 57898887 543
No 202
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=92.83 E-value=0.14 Score=48.09 Aligned_cols=101 Identities=15% Similarity=0.137 Sum_probs=62.9
Q ss_pred CCCCccCCCCC-CccccccCcccccceEEEEecCC----CCCCccEEecCCCCeEEEeC--CCcEEEEEcCCCC-cEEEE
Q psy4900 366 DSENDCGDGSD-EGDFCSEKTCAYFQFHAIVLGSN----LTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTM-AMSIV 437 (485)
Q Consensus 366 ~~~~~y~~d~~-~I~~~~~~~c~~g~~~~~l~~~~----~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~-~~~i~ 437 (485)
+++.+|.++.. +|.+.+..+ ......+.... +..+. .+++..|+||-.. .+.|.+++..-.. ..+|-
T Consensus 144 Dg~~L~vSdGs~~l~~iDp~T---~~v~~~I~V~~~g~~v~~lN--eLe~~dG~lyanvw~s~~I~vIDp~TG~V~~~Id 218 (268)
T 3nok_A 144 WNGKLVRSDGGTMLTFHEPDG---FALVGAVQVKLRGQPVELIN--ELECANGVIYANIWHSSDVLEIDPATGTVVGVID 218 (268)
T ss_dssp ETTEEEEECSSSEEEEECTTT---CCEEEEEECEETTEECCCEE--EEEEETTEEEEEETTCSEEEEECTTTCBEEEEEE
T ss_pred CCCEEEEECCCCEEEEEcCCC---CeEEEEEEeCCCCccccccc--ccEEeCCEEEEEECCCCeEEEEeCCCCcEEEEEE
Confidence 45667777633 666666441 23333332222 12222 2445688988766 6788888886333 33333
Q ss_pred eCC------------CcccceEEEeCCCCeEEEEeCCCCcEEEEEc
Q psy4900 438 SEA------------AYKASGVALDINAKRLFWCDNLLDYIETVDY 471 (485)
Q Consensus 438 ~~~------------~~~p~glavD~~~~~lYW~D~~~~~I~~~~~ 471 (485)
..+ ...|+|||+|+.+++||.|-..=.+++.+.+
T Consensus 219 l~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev~~ 264 (268)
T 3nok_A 219 ASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEVRL 264 (268)
T ss_dssp CHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEEEEE
T ss_pred CCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceEEEEE
Confidence 221 2378999999999999999877788888776
No 203
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=92.53 E-value=0.58 Score=46.46 Aligned_cols=109 Identities=12% Similarity=0.054 Sum_probs=71.3
Q ss_pred cccccCCCCccCCCCC------CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC-----------CCcE
Q psy4900 361 STWKCDSENDCGDGSD------EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD-----------SNQI 423 (485)
Q Consensus 361 ~~~~~~~~~~y~~d~~------~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd-----------~~~I 423 (485)
.+..|+++.+|..+.. .|.+.+..+ +....++-. + ..|. |++.|..++||.++ ...|
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t---~~v~~~I~v-G-~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~V 111 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEA---GRVIGMIDG-G-FLPN-PVVADDGSFIAHASTVFSRIARGERTDYV 111 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTT---TEEEEEEEE-C-SSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCC---CeEEEEEEC-C-CCCc-EEECCCCCEEEEEcccccccccCCCCCEE
Confidence 3445778888888763 566676651 333333322 2 3475 99999999999987 2346
Q ss_pred EEEEcCCCCc-EEEEeCC------CcccceEEEeCCCCeEEEEeCC-CCcEEEEEccCCC
Q psy4900 424 LRTNMDGTMA-MSIVSEA------AYKASGVALDINAKRLFWCDNL-LDYIETVDYEGKN 475 (485)
Q Consensus 424 ~r~~~dG~~~-~~i~~~~------~~~p~glavD~~~~~lYW~D~~-~~~I~~~~~dG~~ 475 (485)
...++..... ..|.... ...|.+|+|++..++||.+... .+.|.+.++....
T Consensus 112 sviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~ 171 (386)
T 3sjl_D 112 EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA 171 (386)
T ss_dssp EEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE
T ss_pred EEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCc
Confidence 6666654332 2222111 2379999999999999999864 6788888776443
No 204
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Probab=92.51 E-value=0.089 Score=40.74 Aligned_cols=35 Identities=40% Similarity=0.688 Sum_probs=24.4
Q ss_pred CCCCCcc--ccccCCC--CCCeeeCCCCceeeCCCCCCC-Ccch
Q psy4900 179 CSLLNCE--FTCQASP--TGGVCQCPEGQKVANDSRTCL-LYMK 217 (485)
Q Consensus 179 C~~~~C~--~~C~n~~--~~~~C~C~~G~~l~~~~~~C~-d~~e 217 (485)
|...+|. ..|.+++ ++|.|.|++||. ++.|. +++|
T Consensus 51 C~~~pC~ngg~C~~~~~~~~~~C~C~~G~~----G~~Ce~~ide 90 (91)
T 1tpg_A 51 CSEPRCFNGGTCQQALYFSDFVCQCPEGFA----GKSCEIDTRA 90 (91)
T ss_dssp CSSCCSCTTCEEEEESSSSCEEEECCTTCB----SSSCCBCSSC
T ss_pred ccCCCCCCCCEeecCCCCCCeEeECCCCCc----CCcCCcCCCC
Confidence 4444453 4688877 899999999994 56785 5543
No 205
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}
Probab=92.47 E-value=0.057 Score=51.31 Aligned_cols=37 Identities=19% Similarity=0.565 Sum_probs=33.1
Q ss_pred CCccccccCCCCCCeeeCCCCceeeCCCCCCCCcchh
Q psy4900 182 LNCEFTCQASPTGGVCQCPEGQKVANDSRTCLLYMKN 218 (485)
Q Consensus 182 ~~C~~~C~n~~~~~~C~C~~G~~l~~~~~~C~d~~e~ 218 (485)
+.|+|.|.|+.++|+|.|++||.|..+.++|.+.+++
T Consensus 11 ~~C~~~C~~~~~~~~C~C~~G~~l~~d~~sC~p~~~c 47 (283)
T 3f1s_B 11 DGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQC 47 (283)
T ss_dssp SSCSSBCCCCTTSCCCBCCTTEEECTTSSCEEECSTT
T ss_pred CCCCCEeeCCCCCeEecCCCCcccCCCCCcccccccc
Confidence 4789999999999999999999998899999886653
No 206
>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=92.23 E-value=0.041 Score=47.34 Aligned_cols=32 Identities=25% Similarity=0.622 Sum_probs=28.5
Q ss_pred CccccccCCCCCCeeeCCCCceeeCCCCCCCC
Q psy4900 183 NCEFTCQASPTGGVCQCPEGQKVANDSRTCLL 214 (485)
Q Consensus 183 ~C~~~C~n~~~~~~C~C~~G~~l~~~~~~C~d 214 (485)
.|.+.|.|++++++|.|.+||.|..++++|.+
T Consensus 127 ~C~~~C~n~~g~~~C~C~~Gy~l~~~~~~C~~ 158 (159)
T 1nzi_A 127 PCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGV 158 (159)
T ss_dssp CSSSEEEEETTEEEEECCTTCEECTTSSCEEC
T ss_pred CCCCcccCcCCCEEEecCCCcEECCCCCcccc
Confidence 46778999999999999999999888998865
No 207
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=92.09 E-value=0.89 Score=44.36 Aligned_cols=74 Identities=16% Similarity=0.228 Sum_probs=53.7
Q ss_pred CCCCCCccEEe--cCCCC--eEEEeC-CCcEEEEEcC----CCCcEEEEeC--CCcccceEEEeCCCCeEEEEeCCCCcE
Q psy4900 398 SNLTNPTDLAL--DPTSG--LMFVAD-SNQILRTNMD----GTMAMSIVSE--AAYKASGVALDINAKRLFWCDNLLDYI 466 (485)
Q Consensus 398 ~~~~~p~~iav--D~~~~--~lywtd-~~~I~r~~~d----G~~~~~i~~~--~~~~p~glavD~~~~~lYW~D~~~~~I 466 (485)
..+..|.||++ ++..+ ++|-++ ..+|+...+. |+-...++.+ --..|.|+++|...++||..+...+ |
T Consensus 125 t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~G-I 203 (355)
T 3amr_A 125 TAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDEA-I 203 (355)
T ss_dssp CCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTE-E
T ss_pred CCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEecccce-E
Confidence 45688999999 99877 477777 6677665552 3222233321 1347999999999999999998866 9
Q ss_pred EEEEcc
Q psy4900 467 ETVDYE 472 (485)
Q Consensus 467 ~~~~~d 472 (485)
++.+.+
T Consensus 204 w~~da~ 209 (355)
T 3amr_A 204 WKFSAE 209 (355)
T ss_dssp EEEECS
T ss_pred EEEeCC
Confidence 999855
No 208
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=92.01 E-value=0.53 Score=46.44 Aligned_cols=108 Identities=11% Similarity=0.120 Sum_probs=73.2
Q ss_pred ccccCCCCccCCCC--CCccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC---------CCcEEEEEcCC
Q psy4900 362 TWKCDSENDCGDGS--DEGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD---------SNQILRTNMDG 430 (485)
Q Consensus 362 ~~~~~~~~~y~~d~--~~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd---------~~~I~r~~~dG 430 (485)
.+.+++..+|.+.. +.|.+.++. .......+ .....|.+++++|..++||.+. .+.|...++..
T Consensus 218 ~~~~~~~~l~~~~~~~~~i~~~d~~----~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~ 292 (433)
T 3bws_A 218 LYDPIRDLVYCSNWISEDISVIDRK----TKLEIRKT-DKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDK 292 (433)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETT----TTEEEEEC-CCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTT
T ss_pred EEcCCCCEEEEEecCCCcEEEEECC----CCcEEEEe-cCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCC
Confidence 45566667776653 266666765 33322233 2344588999999988888776 23688888875
Q ss_pred CCcEEEEeCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEccCCC
Q psy4900 431 TMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEGKN 475 (485)
Q Consensus 431 ~~~~~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG~~ 475 (485)
.....++. ....|.++++++..+.||.+....+.|.+.++++..
T Consensus 293 ~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~ 336 (433)
T 3bws_A 293 EKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK 336 (433)
T ss_dssp TEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE
T ss_pred CcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc
Confidence 54333332 123688999998888999999889999999988544
No 209
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=92.01 E-value=0.89 Score=44.14 Aligned_cols=74 Identities=16% Similarity=0.140 Sum_probs=56.2
Q ss_pred CCCCCccEEecCCCCeEEEeC--CCcEEEEEcC-CCCcEEE--EeC--CCcccceEEEeCCCCeEEEEeCCCCcEEEEEc
Q psy4900 399 NLTNPTDLALDPTSGLMFVAD--SNQILRTNMD-GTMAMSI--VSE--AAYKASGVALDINAKRLFWCDNLLDYIETVDY 471 (485)
Q Consensus 399 ~~~~p~~iavD~~~~~lywtd--~~~I~r~~~d-G~~~~~i--~~~--~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~ 471 (485)
....|.+++++|..++||.++ ..+|...+++ ....+.+ +.. ....|.+|++++..++||.+....+.|.+.++
T Consensus 143 ~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~ 222 (365)
T 1jof_A 143 ENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVI 222 (365)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEE
Confidence 346789999999988899888 5789999987 2222222 221 13569999999999999999887888888877
Q ss_pred c
Q psy4900 472 E 472 (485)
Q Consensus 472 d 472 (485)
+
T Consensus 223 ~ 223 (365)
T 1jof_A 223 D 223 (365)
T ss_dssp C
T ss_pred e
Confidence 6
No 210
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=91.70 E-value=0.52 Score=43.15 Aligned_cols=113 Identities=12% Similarity=0.036 Sum_probs=73.2
Q ss_pred cccccCCCCccCCCCCCccccccCccccc-ceEEEEecCC-CCCCccEEecCCCCeEEEeC-----CCcEEEEEcCCCCc
Q psy4900 361 STWKCDSENDCGDGSDEGDFCSEKTCAYF-QFHAIVLGSN-LTNPTDLALDPTSGLMFVAD-----SNQILRTNMDGTMA 433 (485)
Q Consensus 361 ~~~~~~~~~~y~~d~~~I~~~~~~~c~~g-~~~~~l~~~~-~~~p~~iavD~~~~~lywtd-----~~~I~r~~~dG~~~ 433 (485)
..|.+++..+++...+.|.+.++. + .....+.... ...+.++++.|...+|+++. ..+|+..++++...
T Consensus 47 ~~~spdg~~l~~~~~~~i~~~d~~----~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~ 122 (297)
T 2ojh_A 47 PNWSPDGKYLLLNSEGLLYRLSLA----GDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP 122 (297)
T ss_dssp EEECTTSSEEEEEETTEEEEEESS----SCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC
T ss_pred eEECCCCCEEEEEcCCeEEEEeCC----CCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce
Confidence 345667666666555567777776 5 4444433222 24567899999988888877 36888888887765
Q ss_pred EEEEeCCCcccceEEEeCCCCeEEEEeCCCC--cEEEEEccCCCeEEE
Q psy4900 434 MSIVSEAAYKASGVALDINAKRLFWCDNLLD--YIETVDYEGKNRFLI 479 (485)
Q Consensus 434 ~~i~~~~~~~p~glavD~~~~~lYW~D~~~~--~I~~~~~dG~~r~~~ 479 (485)
+.+... ..+..+++.+..++|+++....+ .|..+++++...+.+
T Consensus 123 ~~~~~~--~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~ 168 (297)
T 2ojh_A 123 RLMTKN--LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRL 168 (297)
T ss_dssp EECCSS--SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEEC
T ss_pred EEeecC--CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEc
Confidence 554432 23677888888888887665555 455566666554443
No 211
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=91.02 E-value=0.92 Score=45.85 Aligned_cols=60 Identities=5% Similarity=0.107 Sum_probs=46.0
Q ss_pred CCCccEEecCCCCeEEEeC--CCcEEEEEcC-CCCcEEEEeCCCc----------------ccceEEEeCCCCeEEEEe
Q psy4900 401 TNPTDLALDPTSGLMFVAD--SNQILRTNMD-GTMAMSIVSEAAY----------------KASGVALDINAKRLFWCD 460 (485)
Q Consensus 401 ~~p~~iavD~~~~~lywtd--~~~I~r~~~d-G~~~~~i~~~~~~----------------~p~glavD~~~~~lYW~D 460 (485)
..|.+|+|.+..++||.++ ...|...+++ ....+.+-.-.+. .|.+|+|++..++||++.
T Consensus 321 ~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 321 PLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 4589999999999999999 6788888875 3333333221121 699999999999999998
No 212
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=90.54 E-value=0.4 Score=48.90 Aligned_cols=62 Identities=16% Similarity=0.336 Sum_probs=49.3
Q ss_pred CCCCCccEEecCCCCeEEEeC-------------------CCcEEEEEcCCCC-------------------cEEEEeCC
Q psy4900 399 NLTNPTDLALDPTSGLMFVAD-------------------SNQILRTNMDGTM-------------------AMSIVSEA 440 (485)
Q Consensus 399 ~~~~p~~iavD~~~~~lywtd-------------------~~~I~r~~~dG~~-------------------~~~i~~~~ 440 (485)
..+....|+++|. |+||++- ..+|.|++.||.. +..|+..+
T Consensus 137 ~~H~g~~l~fgpD-G~LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G 215 (463)
T 2wg3_C 137 RKHLGGQLLFGPD-GFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHG 215 (463)
T ss_dssp SSSCEEEEEECTT-SCEEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEEC
T ss_pred CcccCCcEeECCC-CcEEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEEC
Confidence 3566677999984 7999984 1469999999951 45688899
Q ss_pred CcccceEEEeCCCC------eEEEEeC
Q psy4900 441 AYKASGVALDINAK------RLFWCDN 461 (485)
Q Consensus 441 ~~~p~glavD~~~~------~lYW~D~ 461 (485)
+.+|.|||+|+.++ +||-+|.
T Consensus 216 ~RNp~gla~dp~tg~~~G~l~~~~~D~ 242 (463)
T 2wg3_C 216 LHDPGRCAVDRHPTDININLTILCSDS 242 (463)
T ss_dssp CSSCCBEEEESSCSSTTCSEEEEEECC
T ss_pred CCCcceEEECCCCCCcccceEEEeccc
Confidence 99999999998854 6777885
No 213
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=90.53 E-value=1.5 Score=40.42 Aligned_cols=75 Identities=11% Similarity=0.033 Sum_probs=50.9
Q ss_pred CCCccEEecCCCCeEEEeC----CCcEEEEEcCCCC-cEEEEeCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEccC-C
Q psy4900 401 TNPTDLALDPTSGLMFVAD----SNQILRTNMDGTM-AMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEG-K 474 (485)
Q Consensus 401 ~~p~~iavD~~~~~lywtd----~~~I~r~~~dG~~-~~~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG-~ 474 (485)
....||++|. +.||.+. ..+|.+.++.... ...+--..-....||+++ .++||-+.+..++|.+.+.+. +
T Consensus 21 ~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 21 AFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp CCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred cccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence 3345899986 7999997 3589999987433 333322233344666665 799999999999999988753 3
Q ss_pred CeEEE
Q psy4900 475 NRFLI 479 (485)
Q Consensus 475 ~r~~~ 479 (485)
..+++
T Consensus 97 ~~~ti 101 (243)
T 3mbr_X 97 PRARF 101 (243)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 34333
No 214
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=90.34 E-value=0.45 Score=47.44 Aligned_cols=113 Identities=12% Similarity=0.085 Sum_probs=77.0
Q ss_pred cccccCCCCccCCCC-C---CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC----CCcEEEEEcCCCC
Q psy4900 361 STWKCDSENDCGDGS-D---EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD----SNQILRTNMDGTM 432 (485)
Q Consensus 361 ~~~~~~~~~~y~~d~-~---~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd----~~~I~r~~~dG~~ 432 (485)
..|.|++..+++... + .|.+.++. +.....+. ........+++.|...+|+++. ...|+..++++..
T Consensus 272 ~~~spdg~~l~~~s~~~g~~~i~~~d~~----~~~~~~l~-~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~ 346 (415)
T 2hqs_A 272 PTWFPDSQNLAFTSDQAGRPQVYKVNIN----GGAPQRIT-WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 346 (415)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETT----SSCCEECC-CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC
T ss_pred eEECCCCCEEEEEECCCCCcEEEEEECC----CCCEEEEe-cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC
Confidence 456778776766432 2 56666666 44333332 2334456789999988898877 2579999998766
Q ss_pred cEEEEeCCCcccceEEEeCCCCeEEEEeCCCC--cEEEEEccCCCeEEEe
Q psy4900 433 AMSIVSEAAYKASGVALDINAKRLFWCDNLLD--YIETVDYEGKNRFLIL 480 (485)
Q Consensus 433 ~~~i~~~~~~~p~glavD~~~~~lYW~D~~~~--~I~~~~~dG~~r~~~~ 480 (485)
.+.|... .....+++.+..+.|+++....+ .|...+++|...+.|.
T Consensus 347 ~~~l~~~--~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~ 394 (415)
T 2hqs_A 347 VQVLSST--FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLP 394 (415)
T ss_dssp EEECCCS--SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECC
T ss_pred EEEecCC--CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEee
Confidence 5544332 36788999888888888765444 8999999998877654
No 215
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=90.25 E-value=0.94 Score=47.09 Aligned_cols=70 Identities=9% Similarity=0.016 Sum_probs=52.3
Q ss_pred CccEEecCCCCeEEEeC-CCcEEEEEcCCCCcEEEEe-CCCcccceEEEeC----CCCeEEEEeCCCCcEEEEEcc
Q psy4900 403 PTDLALDPTSGLMFVAD-SNQILRTNMDGTMAMSIVS-EAAYKASGVALDI----NAKRLFWCDNLLDYIETVDYE 472 (485)
Q Consensus 403 p~~iavD~~~~~lywtd-~~~I~r~~~dG~~~~~i~~-~~~~~p~glavD~----~~~~lYW~D~~~~~I~~~~~d 472 (485)
|.+++++|..++||-++ ...|...+++....+++.. ..-..|.+|++++ ..++||-+....+.|.+.+..
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~ 256 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE 256 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecc
Confidence 88999999999999988 7889999995222222211 1245799999998 889999887666777776654
No 216
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=90.25 E-value=1.5 Score=39.86 Aligned_cols=98 Identities=8% Similarity=0.058 Sum_probs=69.5
Q ss_pred CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeCCCcEEEEEcCC-CCcEEEEeCC-CcccceEEEeCCCC
Q psy4900 377 EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVADSNQILRTNMDG-TMAMSIVSEA-AYKASGVALDINAK 454 (485)
Q Consensus 377 ~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd~~~I~r~~~dG-~~~~~i~~~~-~~~p~glavD~~~~ 454 (485)
.|.+.++. +.....+. ..-..+.++++.|...+|+++....|...++++ .....+.... ...+..+++.+..+
T Consensus 23 ~i~~~d~~----~~~~~~~~-~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~ 97 (297)
T 2ojh_A 23 SIEIFNIR----TRKMRVVW-QTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGA 97 (297)
T ss_dssp EEEEEETT----TTEEEEEE-EESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSS
T ss_pred eEEEEeCC----CCceeeec-cCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCCC
Confidence 56666665 44444444 334567889999998888888888999999998 6655554332 24567899998899
Q ss_pred eEEEEeCC---CCcEEEEEccCCCeEEE
Q psy4900 455 RLFWCDNL---LDYIETVDYEGKNRFLI 479 (485)
Q Consensus 455 ~lYW~D~~---~~~I~~~~~dG~~r~~~ 479 (485)
+|+++... ...|...++++...+.+
T Consensus 98 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 125 (297)
T 2ojh_A 98 LYAISDKVEFGKSAIYLLPSTGGTPRLM 125 (297)
T ss_dssp EEEEEECTTTSSCEEEEEETTCCCCEEC
T ss_pred EEEEEEeCCCCcceEEEEECCCCceEEe
Confidence 99998743 46788888877665544
No 217
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A
Probab=90.15 E-value=0.11 Score=45.35 Aligned_cols=18 Identities=39% Similarity=0.870 Sum_probs=15.2
Q ss_pred ccccc-ccCCCCCCccccCCCCcc
Q psy4900 272 MCIIT-RASGNALGYKCACDIGYR 294 (485)
Q Consensus 272 ~C~n~-~~~~~~g~~~C~C~~Gy~ 294 (485)
.|+++ + ++|+|.|++||.
T Consensus 145 ~C~~~~~-----~~~~C~C~~G~~ 163 (169)
T 2vj2_A 145 TCSNTGP-----DKYQCSCPEGYS 163 (169)
T ss_dssp EEEECST-----TCEEEECCTTCC
T ss_pred EEcCCCC-----CCcEeECCCCCc
Confidence 57775 6 899999999995
No 218
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=89.90 E-value=0.97 Score=43.85 Aligned_cols=74 Identities=12% Similarity=0.205 Sum_probs=55.0
Q ss_pred CCccEE-ecCCCCeEEEeC--CC-----cEEEEEcC--CCCcEE--EEeCCCcccceEEEeC---CCCeEEEEeCCCCcE
Q psy4900 402 NPTDLA-LDPTSGLMFVAD--SN-----QILRTNMD--GTMAMS--IVSEAAYKASGVALDI---NAKRLFWCDNLLDYI 466 (485)
Q Consensus 402 ~p~~ia-vD~~~~~lywtd--~~-----~I~r~~~d--G~~~~~--i~~~~~~~p~glavD~---~~~~lYW~D~~~~~I 466 (485)
.|.+|+ ++|..++||.++ .. .|....++ |.-+.+ ++......|.+|++++ ..++||.+....+.|
T Consensus 255 ~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v 334 (365)
T 1jof_A 255 YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWL 334 (365)
T ss_dssp EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEE
T ss_pred ccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeE
Confidence 478899 999988999887 33 78888775 332221 2322345689999998 688999998878899
Q ss_pred EEEEccCCC
Q psy4900 467 ETVDYEGKN 475 (485)
Q Consensus 467 ~~~~~dG~~ 475 (485)
.+.++++..
T Consensus 335 ~v~~~~~~~ 343 (365)
T 1jof_A 335 EIYRWKDEF 343 (365)
T ss_dssp EEEEEETTE
T ss_pred EEEEEchhh
Confidence 999888763
No 219
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=89.41 E-value=1.2 Score=46.29 Aligned_cols=82 Identities=20% Similarity=0.191 Sum_probs=58.5
Q ss_pred CCCCCccEEecCCCCeEEEeC-----------------------CCcEEEEEcCCCC-------cEEEEeC---------
Q psy4900 399 NLTNPTDLALDPTSGLMFVAD-----------------------SNQILRTNMDGTM-------AMSIVSE--------- 439 (485)
Q Consensus 399 ~~~~p~~iavD~~~~~lywtd-----------------------~~~I~r~~~dG~~-------~~~i~~~--------- 439 (485)
.+.+|.+|+++|.+|.||.+= ...|+|...++.+ ..+++..
T Consensus 382 ~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~~ 461 (592)
T 4a9v_A 382 RMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGT 461 (592)
T ss_dssp CEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTS
T ss_pred cccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCcccccc
Confidence 356899999999999999983 1469999987643 3444421
Q ss_pred ------------CCcccceEEEeCCCCeEEE-EeCC-----------CCcEEEEEccCCCeEEEec
Q psy4900 440 ------------AAYKASGVALDINAKRLFW-CDNL-----------LDYIETVDYEGKNRFLILR 481 (485)
Q Consensus 440 ------------~~~~p~glavD~~~~~lYW-~D~~-----------~~~I~~~~~dG~~r~~~~~ 481 (485)
.+..|.+|++|. .+.||. +|.. ...|.+.+.+....+.|+.
T Consensus 462 ~~~g~~~~~~~~~fnsPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~ 526 (592)
T 4a9v_A 462 PKGGSSNITPQNMFNSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMV 526 (592)
T ss_dssp GGGCCTTCCTTTCCCCEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEE
T ss_pred cccCccCccccCccCCCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEe
Confidence 267899999995 589999 8864 2378888875444444444
No 220
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=89.15 E-value=1.5 Score=43.39 Aligned_cols=68 Identities=9% Similarity=0.053 Sum_probs=49.1
Q ss_pred cEEecCCCCeEEEeC-----------CCcEEEEEcCCCCcEEEEeCCCcccceEEEeCCCC-eEEEEeCCCCcEEEEEcc
Q psy4900 405 DLALDPTSGLMFVAD-----------SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAK-RLFWCDNLLDYIETVDYE 472 (485)
Q Consensus 405 ~iavD~~~~~lywtd-----------~~~I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~-~lYW~D~~~~~I~~~~~d 472 (485)
.+++++..++||.+. ..+|..+++.-..+..-+..+ ..|.+|+|+...+ +||-+.+..+.|.+.+..
T Consensus 284 ~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~ 362 (386)
T 3sjl_D 284 QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAE 362 (386)
T ss_dssp CEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETT
T ss_pred eeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence 489999999999975 145777776544332222111 2688999998886 789889889999998876
Q ss_pred C
Q psy4900 473 G 473 (485)
Q Consensus 473 G 473 (485)
.
T Consensus 363 t 363 (386)
T 3sjl_D 363 S 363 (386)
T ss_dssp T
T ss_pred C
Confidence 3
No 221
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=89.05 E-value=1.6 Score=45.73 Aligned_cols=98 Identities=9% Similarity=-0.034 Sum_probs=64.2
Q ss_pred CccCCCCC--CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC-CCcEEEEEcC-CCCcEE-EEeCCCcc
Q psy4900 369 NDCGDGSD--EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD-SNQILRTNMD-GTMAMS-IVSEAAYK 443 (485)
Q Consensus 369 ~~y~~d~~--~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd-~~~I~r~~~d-G~~~~~-i~~~~~~~ 443 (485)
.+|.+..+ .|.+.+..+ +.....+-. -..|.+|++.|..++||.+. ...|...++. .+.+.+ -+.. -..
T Consensus 168 ~~~V~~~~~~~V~viD~~t---~~v~~~i~~--g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~~ 241 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGST---YEIKTVLDT--GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSE 241 (567)
T ss_dssp EEEEEETTTTEEEEEETTT---CCEEEEEEC--SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-CSE
T ss_pred eEEEEeCCCCeEEEEECCC---CeEEEEEeC--CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-CCC
Confidence 34444433 566666551 333333322 23588999999999999888 6789999995 333221 1112 346
Q ss_pred cceEEEe----CCCCeEEEEeCCCCcEEEEEcc
Q psy4900 444 ASGVALD----INAKRLFWCDNLLDYIETVDYE 472 (485)
Q Consensus 444 p~glavD----~~~~~lYW~D~~~~~I~~~~~d 472 (485)
|.+|+++ +..++||-+....+.|.+++..
T Consensus 242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~ 274 (567)
T 1qks_A 242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE 274 (567)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEETTEEEEEETT
T ss_pred CceeEEccccCCCCCEEEEEEccCCeEEEEECC
Confidence 9999999 5888999988877888877643
No 222
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=88.94 E-value=1.7 Score=40.53 Aligned_cols=72 Identities=8% Similarity=0.070 Sum_probs=50.0
Q ss_pred ccEEecCCCCeEEEeC----CCcEEEEEcC-CCCcEEEEeCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEccC-CCeE
Q psy4900 404 TDLALDPTSGLMFVAD----SNQILRTNMD-GTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEG-KNRF 477 (485)
Q Consensus 404 ~~iavD~~~~~lywtd----~~~I~r~~~d-G~~~~~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG-~~r~ 477 (485)
.||+++ .+.||.+. ..+|.+.++. |.-...+....-....||+++ .++||.+.+..+.|.+.+... +..+
T Consensus 46 qGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~~ 121 (262)
T 3nol_A 46 EGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQVR 121 (262)
T ss_dssp EEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred ceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEEE
Confidence 789998 57999998 2489988887 333333332222234667766 789999999999999988863 3344
Q ss_pred EE
Q psy4900 478 LI 479 (485)
Q Consensus 478 ~~ 479 (485)
+|
T Consensus 122 ti 123 (262)
T 3nol_A 122 SF 123 (262)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 223
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=88.71 E-value=3.1 Score=40.79 Aligned_cols=73 Identities=10% Similarity=0.088 Sum_probs=51.9
Q ss_pred CCcc---EEecCCCCeEEEeC-----------CCcEEEEEcCCCCcEEEEeCCCcccceEEEeCCCC-eEEEEeCCCCcE
Q psy4900 402 NPTD---LALDPTSGLMFVAD-----------SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAK-RLFWCDNLLDYI 466 (485)
Q Consensus 402 ~p~~---iavD~~~~~lywtd-----------~~~I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~-~lYW~D~~~~~I 466 (485)
.|.+ +++++..++||.+. ...|..+++.......-+.. -..|.+|++++..+ +||-+....+.|
T Consensus 265 ~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V 343 (373)
T 2mad_H 265 RPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVL 343 (373)
T ss_pred ecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeE
Confidence 3666 89999999999864 13688877764433222221 22699999999888 777777678999
Q ss_pred EEEEccCCC
Q psy4900 467 ETVDYEGKN 475 (485)
Q Consensus 467 ~~~~~dG~~ 475 (485)
.+.++....
T Consensus 344 ~ViD~~t~~ 352 (373)
T 2mad_H 344 HIYDAGAGD 352 (373)
T ss_pred EEEECCCCC
Confidence 999987544
No 224
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=88.31 E-value=2 Score=42.70 Aligned_cols=113 Identities=10% Similarity=0.004 Sum_probs=75.0
Q ss_pred ccccccCCCCccCCCCC----CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC----CCcEEEEEcCCC
Q psy4900 360 PSTWKCDSENDCGDGSD----EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD----SNQILRTNMDGT 431 (485)
Q Consensus 360 ~~~~~~~~~~~y~~d~~----~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd----~~~I~r~~~dG~ 431 (485)
...|.|++..+++...+ .|.+.++. +.....+. .....+.++++.|...+|+++. ...|+..++.+.
T Consensus 183 ~~~~Spdg~~la~~s~~~~~~~i~~~d~~----tg~~~~l~-~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~ 257 (415)
T 2hqs_A 183 SPAWSPDGSKLAYVTFESGRSALVIQTLA----NGAVRQVA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG 257 (415)
T ss_dssp EEEECTTSSEEEEEECTTSSCEEEEEETT----TCCEEEEE-CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred eeEEcCCCCEEEEEEecCCCcEEEEEECC----CCcEEEee-cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC
Confidence 34577888777665432 67777776 44444443 3334567899999988888774 356999999876
Q ss_pred CcEEEEeCCCcccceEEEeCCCCeEEEEeCC--CCcEEEEEccCCCeEE
Q psy4900 432 MAMSIVSEAAYKASGVALDINAKRLFWCDNL--LDYIETVDYEGKNRFL 478 (485)
Q Consensus 432 ~~~~i~~~~~~~p~glavD~~~~~lYW~D~~--~~~I~~~~~dG~~r~~ 478 (485)
..+.+. ..-.....+++.+..++|+.+-.. ..+|.+.++++...+.
T Consensus 258 ~~~~l~-~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~ 305 (415)
T 2hqs_A 258 QIRQVT-DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR 305 (415)
T ss_dssp CEEECC-CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE
T ss_pred CEEeCc-CCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEE
Confidence 544433 333456778888888888877643 3478888888766444
No 225
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=88.27 E-value=1.9 Score=40.22 Aligned_cols=65 Identities=15% Similarity=0.129 Sum_probs=47.5
Q ss_pred ccEEecCCCCeEEEeC--CCcEEEEEcC-CCCcEEEEeCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEccC
Q psy4900 404 TDLALDPTSGLMFVAD--SNQILRTNMD-GTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEG 473 (485)
Q Consensus 404 ~~iavD~~~~~lywtd--~~~I~r~~~d-G~~~~~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG 473 (485)
.||.++ .+.||.+. ..+|.+.++. |.-...+ ...-....||+++ .++||.+.+..+.|.+.+...
T Consensus 58 qGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~T 125 (268)
T 3nok_A 58 QGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMP 125 (268)
T ss_dssp EEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTT
T ss_pred ceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCc
Confidence 688888 47999998 4568888887 4445555 3333345667765 789999999999999888753
No 226
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=88.24 E-value=2.2 Score=39.85 Aligned_cols=95 Identities=11% Similarity=-0.061 Sum_probs=57.2
Q ss_pred Ccccccc-CcccccceEEEEecCCCCCCccEEecCCCCeEEEeCCCcEEEEEcCCCCcEEEEeCCCcccceEEEeCCCCe
Q psy4900 377 EGDFCSE-KTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVADSNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKR 455 (485)
Q Consensus 377 ~I~~~~~-~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd~~~I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~~ 455 (485)
.|.+.+. + |...-.+-......+.++++.|. |.||.+..+.|...+.+|.....+-...-..+.++++. ..++
T Consensus 16 ~v~~~d~~t----G~~~w~~~~~~~~~~~~~~~~pd-G~ilvs~~~~V~~~d~~G~~~W~~~~~~~~~~~~~~~~-~dG~ 89 (276)
T 3no2_A 16 KIAIINKDT----KEIVWEYPLEKGWECNSVAATKA-GEILFSYSKGAKMITRDGRELWNIAAPAGCEMQTARIL-PDGN 89 (276)
T ss_dssp EEEEEETTT----TEEEEEEECCTTCCCCEEEECTT-SCEEEECBSEEEEECTTSCEEEEEECCTTCEEEEEEEC-TTSC
T ss_pred EEEEEECCC----CeEEEEeCCCccCCCcCeEECCC-CCEEEeCCCCEEEECCCCCEEEEEcCCCCccccccEEC-CCCC
Confidence 5666666 5 66655544333346888999986 45555777788888887765444332111234445554 4566
Q ss_pred EEEEeCC-CCcEEEEEccCCCeE
Q psy4900 456 LFWCDNL-LDYIETVDYEGKNRF 477 (485)
Q Consensus 456 lYW~D~~-~~~I~~~~~dG~~r~ 477 (485)
++.++.. .++|...+.+|+...
T Consensus 90 ~lv~~~~~~~~v~~vd~~Gk~l~ 112 (276)
T 3no2_A 90 ALVAWCGHPSTILEVNMKGEVLS 112 (276)
T ss_dssp EEEEEESTTEEEEEECTTSCEEE
T ss_pred EEEEecCCCCEEEEEeCCCCEEE
Confidence 6666666 667776677776533
No 227
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=87.97 E-value=1.1 Score=44.99 Aligned_cols=72 Identities=8% Similarity=0.048 Sum_probs=52.4
Q ss_pred EEecCCCCeEEEeCC-----------CcEEEEEcCCCCcEEEEeCCCc-ccceEEEeCCCC-eEEEEeCCCCcEEEEEcc
Q psy4900 406 LALDPTSGLMFVADS-----------NQILRTNMDGTMAMSIVSEAAY-KASGVALDINAK-RLFWCDNLLDYIETVDYE 472 (485)
Q Consensus 406 iavD~~~~~lywtd~-----------~~I~r~~~dG~~~~~i~~~~~~-~p~glavD~~~~-~lYW~D~~~~~I~~~~~d 472 (485)
|++++..++||.+.. +.|..+++.-.....-| .+. .|.+|+|++..+ +||-+.+..+.|.+.++.
T Consensus 324 va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I--~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~ 401 (426)
T 3c75_H 324 TAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKI--ELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAA 401 (426)
T ss_dssp EEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE--EEEEEECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred eEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEE--ECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECC
Confidence 899999999999861 25777766543322222 222 599999999998 999999889999999987
Q ss_pred CCC-eEEE
Q psy4900 473 GKN-RFLI 479 (485)
Q Consensus 473 G~~-r~~~ 479 (485)
... .++|
T Consensus 402 t~kvv~tI 409 (426)
T 3c75_H 402 TGEELRSV 409 (426)
T ss_dssp TCCEEEEE
T ss_pred CCCEEEEe
Confidence 443 4444
No 228
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Probab=87.96 E-value=0.37 Score=30.44 Aligned_cols=23 Identities=35% Similarity=0.888 Sum_probs=18.5
Q ss_pred ccccccccCCCCCCccccCCCCccccCCCCCC
Q psy4900 271 HMCIITRASGNALGYKCACDIGYRLSVNGNNC 302 (485)
Q Consensus 271 ~~C~n~~~~~~~g~~~C~C~~Gy~l~~d~~~C 302 (485)
..|+++. ++|+|.|+.||. +..|
T Consensus 15 g~C~~~~-----~~~~C~C~~G~~----G~~C 37 (39)
T 1edm_B 15 GSCKDDI-----NSYECWCPFGFE----GKNC 37 (39)
T ss_dssp CEEEEET-----TEEEEECCTTCC----STTS
T ss_pred CEeEcCC-----CceEeECCCCCc----CCcc
Confidence 3688888 999999999994 5555
No 229
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=87.89 E-value=0.97 Score=46.98 Aligned_cols=61 Identities=18% Similarity=0.348 Sum_probs=46.7
Q ss_pred CCCCCccEEecCCCCeEEE-eCCC-------------cEEEEEcCCCCcEEEEe-CCCcccceEEEeCCCCeEEEEe
Q psy4900 399 NLTNPTDLALDPTSGLMFV-ADSN-------------QILRTNMDGTMAMSIVS-EAAYKASGVALDINAKRLFWCD 460 (485)
Q Consensus 399 ~~~~p~~iavD~~~~~lyw-td~~-------------~I~r~~~dG~~~~~i~~-~~~~~p~glavD~~~~~lYW~D 460 (485)
.+..|..|+||+. |.||+ ||.. .|+++..+....+.|+. .....|+||++.+..+.||.+-
T Consensus 474 ~fnsPDnL~fd~~-G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 474 MFNSPDGLGFDKA-GRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCCCEEEEEECTT-CCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred ccCCCCceEECCC-CCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 3788999999986 89999 8821 68888875444444544 3456899999999999999865
No 230
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Probab=87.71 E-value=0.15 Score=43.26 Aligned_cols=30 Identities=33% Similarity=0.793 Sum_probs=25.8
Q ss_pred ccc-cccCCCCCCeeeCCCCceeeCCCCCCC
Q psy4900 184 CEF-TCQASPTGGVCQCPEGQKVANDSRTCL 213 (485)
Q Consensus 184 C~~-~C~n~~~~~~C~C~~G~~l~~~~~~C~ 213 (485)
|++ .|.|++++|+|.|++||.+..++++|.
T Consensus 117 C~~g~C~n~~g~y~C~C~~Gy~g~~~~~~C~ 147 (147)
T 2w86_A 117 CKNGLCVNTRGSFKCQCPSGMTLDATGRICL 147 (147)
T ss_dssp SSSSEEEEETTEEEEECCTTCCBCTTSSCBC
T ss_pred CCCCEEECCCCCEEeeCCCCCccCCCCCeeC
Confidence 543 799999999999999999988888874
No 231
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=87.50 E-value=2.4 Score=43.89 Aligned_cols=106 Identities=10% Similarity=-0.014 Sum_probs=72.3
Q ss_pred cccCCCCccCCCCC-Ccccccc--CcccccceEEEEecCCCCCCccEEecC----CCCeEEEeC--CCcEEEEEcCCCCc
Q psy4900 363 WKCDSENDCGDGSD-EGDFCSE--KTCAYFQFHAIVLGSNLTNPTDLALDP----TSGLMFVAD--SNQILRTNMDGTMA 433 (485)
Q Consensus 363 ~~~~~~~~y~~d~~-~I~~~~~--~~c~~g~~~~~l~~~~~~~p~~iavD~----~~~~lywtd--~~~I~r~~~dG~~~ 433 (485)
+.++++.+|..+.+ .|.+.++ .+ +....++- .-..|++|+++| ..++||-+. .+.|...+......
T Consensus 186 ~spdg~~l~v~~~d~~V~v~D~~~~t---~~~~~~i~--~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~ 260 (543)
T 1nir_A 186 MSASGRYLLVIGRDARIDMIDLWAKE---PTKVAEIK--IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP 260 (543)
T ss_dssp ECTTSCEEEEEETTSEEEEEETTSSS---CEEEEEEE--CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE
T ss_pred ECCCCCEEEEECCCCeEEEEECcCCC---CcEEEEEe--cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc
Confidence 56788888887665 6666666 31 44444443 234699999999 888899887 57776665543222
Q ss_pred EEEEeC-C----------CcccceEEEeCCCCeEEEEeCCCCcEEEEEccC
Q psy4900 434 MSIVSE-A----------AYKASGVALDINAKRLFWCDNLLDYIETVDYEG 473 (485)
Q Consensus 434 ~~i~~~-~----------~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG 473 (485)
...+.. . -.++.+|++.+..+++|.+....++|...++..
T Consensus 261 ~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~ 311 (543)
T 1nir_A 261 KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD 311 (543)
T ss_dssp EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTT
T ss_pred ceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecC
Confidence 222322 1 125678999988999999988889998888764
No 232
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=86.16 E-value=1.9 Score=42.43 Aligned_cols=95 Identities=6% Similarity=-0.167 Sum_probs=61.6
Q ss_pred CCccCCCCC------CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC-----------CCcEEEEEcCC
Q psy4900 368 ENDCGDGSD------EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD-----------SNQILRTNMDG 430 (485)
Q Consensus 368 ~~~y~~d~~------~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd-----------~~~I~r~~~dG 430 (485)
..+|.++.. .|.+++.++ +....++-.. ..| +|++.|..++||.++ .+.|...++.-
T Consensus 32 ~~~yV~~~~~~~~~d~vsvID~~t---~~v~~~i~vG--~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T 105 (368)
T 1mda_H 32 RRSHITLPAYFAGTTENWVSCAGC---GVTLGHSLGA--FLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT 105 (368)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTT---TEEEEEEEEC--TTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT
T ss_pred CeEEEECCccCCccceEEEEECCC---CeEEEEEeCC--CCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC
Confidence 456665543 344666551 3334444333 358 999999999999996 25677777764
Q ss_pred CC-cEEEEeC------CCcccceEEEeCCCCeEEEEeCC-CCcEEE
Q psy4900 431 TM-AMSIVSE------AAYKASGVALDINAKRLFWCDNL-LDYIET 468 (485)
Q Consensus 431 ~~-~~~i~~~------~~~~p~glavD~~~~~lYW~D~~-~~~I~~ 468 (485)
.. ..+|-.. ....|.+|+|++..++||.+... ...|.+
T Consensus 106 ~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V 151 (368)
T 1mda_H 106 FLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGL 151 (368)
T ss_dssp CCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEE
T ss_pred CCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEE
Confidence 33 2333221 13579999999999999999865 455666
No 233
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=85.76 E-value=2.6 Score=42.57 Aligned_cols=93 Identities=13% Similarity=0.054 Sum_probs=61.0
Q ss_pred CccccccCcccccceEEEEecC-CCCCCccEEe--cCCCCeEEEeC-------CCcEEEEEcCCCCc---EEE-EeC---
Q psy4900 377 EGDFCSEKTCAYFQFHAIVLGS-NLTNPTDLAL--DPTSGLMFVAD-------SNQILRTNMDGTMA---MSI-VSE--- 439 (485)
Q Consensus 377 ~I~~~~~~~c~~g~~~~~l~~~-~~~~p~~iav--D~~~~~lywtd-------~~~I~r~~~dG~~~---~~i-~~~--- 439 (485)
+|.+.++++ ++...++-.. .-..|+.|++ +|...++|.+. ...|.+...++... ++| +..
T Consensus 229 ~V~v~D~~~---~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v 305 (462)
T 2ece_A 229 RIHFWDLRK---RKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPL 305 (462)
T ss_dssp EEEEEETTT---TEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEEC
T ss_pred EEEEEECCC---CcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccc
Confidence 666666651 3223333221 1235777766 99988999875 35777777765221 122 111
Q ss_pred --C-----------CcccceEEEeCCCCeEEEEeCCCCcEEEEEcc
Q psy4900 440 --A-----------AYKASGVALDINAKRLFWCDNLLDYIETVDYE 472 (485)
Q Consensus 440 --~-----------~~~p~glavD~~~~~lYW~D~~~~~I~~~~~d 472 (485)
. -..|.+|+|.+..++||.+.++.+.|.+.+.+
T Consensus 306 ~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 306 EGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp CSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred cccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 1 14589999999999999999999999999875
No 234
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=85.68 E-value=3 Score=40.10 Aligned_cols=73 Identities=12% Similarity=0.109 Sum_probs=48.9
Q ss_pred ccccCCCCccCCCC-C---CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC-CCcEEEEEcCCCCcEEE
Q psy4900 362 TWKCDSENDCGDGS-D---EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD-SNQILRTNMDGTMAMSI 436 (485)
Q Consensus 362 ~~~~~~~~~y~~d~-~---~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd-~~~I~r~~~dG~~~~~i 436 (485)
.|.|++..+.+... + .|.+.+++ +.....+.........++++.|...+|+|+. ...|++.++++...+.+
T Consensus 42 ~~SpDg~~l~~~~~~~g~~~l~~~d~~----~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~ 117 (388)
T 3pe7_A 42 CFTRDGSKLLFGGAFDGPWNYYLLDLN----TQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVV 117 (388)
T ss_dssp CBCTTSCEEEEEECTTSSCEEEEEETT----TCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred cCCCCCCEEEEEEcCCCCceEEEEeCC----CCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceee
Confidence 46777776655433 2 47777777 6555554433222233678999988999988 67899999998776655
Q ss_pred Ee
Q psy4900 437 VS 438 (485)
Q Consensus 437 ~~ 438 (485)
..
T Consensus 118 ~~ 119 (388)
T 3pe7_A 118 YQ 119 (388)
T ss_dssp EE
T ss_pred ee
Confidence 54
No 235
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Probab=85.35 E-value=0.24 Score=31.38 Aligned_cols=19 Identities=26% Similarity=0.546 Sum_probs=16.7
Q ss_pred ccccCCCCCCeeeCCCCce
Q psy4900 186 FTCQASPTGGVCQCPEGQK 204 (485)
Q Consensus 186 ~~C~n~~~~~~C~C~~G~~ 204 (485)
..|.++.++|.|.|++||.
T Consensus 15 g~C~~~~~~~~C~C~~G~~ 33 (39)
T 1edm_B 15 GSCKDDINSYECWCPFGFE 33 (39)
T ss_dssp CEEEEETTEEEEECCTTCC
T ss_pred CEeEcCCCceEeECCCCCc
Confidence 4688889999999999994
No 236
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=85.20 E-value=4.1 Score=42.55 Aligned_cols=107 Identities=10% Similarity=-0.018 Sum_probs=64.5
Q ss_pred ccccCCCCccCCCCC-Ccccccc---CcccccceEEEEecCCCCCCccEEec----CCCCeEEEeC--CCcEEEE-----
Q psy4900 362 TWKCDSENDCGDGSD-EGDFCSE---KTCAYFQFHAIVLGSNLTNPTDLALD----PTSGLMFVAD--SNQILRT----- 426 (485)
Q Consensus 362 ~~~~~~~~~y~~d~~-~I~~~~~---~~c~~g~~~~~l~~~~~~~p~~iavD----~~~~~lywtd--~~~I~r~----- 426 (485)
.+.++++.+|....+ .|.+.++ . +.....+.. -..|++|+++ |..++||.+. .+.|...
T Consensus 203 ~~SpDGr~lyv~~~dg~V~viD~~~~t----~~~v~~i~~--G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~ 276 (567)
T 1qks_A 203 RLSASGRYLFVIGRDGKVNMIDLWMKE----PTTVAEIKI--GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL 276 (567)
T ss_dssp EECTTSCEEEEEETTSEEEEEETTSSS----CCEEEEEEC--CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCC----CcEeEEEec--CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCC
Confidence 346777888876654 6666666 3 444444432 2359999999 5777888877 3443332
Q ss_pred ------EcCCC--------------------------------CcEEEEeC------------CCcccceEEEeCCCCeE
Q psy4900 427 ------NMDGT--------------------------------MAMSIVSE------------AAYKASGVALDINAKRL 456 (485)
Q Consensus 427 ------~~dG~--------------------------------~~~~i~~~------------~~~~p~glavD~~~~~l 456 (485)
.+.|. ++..++.. .-..|.++++|+..++|
T Consensus 277 ~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~ 356 (567)
T 1qks_A 277 EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYF 356 (567)
T ss_dssp CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEE
T ss_pred cEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEE
Confidence 22110 00011110 01246678888888888
Q ss_pred EEEeCCCCcEEEEEccCC
Q psy4900 457 FWCDNLLDYIETVDYEGK 474 (485)
Q Consensus 457 YW~D~~~~~I~~~~~dG~ 474 (485)
|-+....++|.+.++...
T Consensus 357 ~va~~~sn~V~ViD~~t~ 374 (567)
T 1qks_A 357 ITAANARNKLVVIDTKEG 374 (567)
T ss_dssp EEEEGGGTEEEEEETTTT
T ss_pred EEEeCCCCeEEEEECCCC
Confidence 888888888888877744
No 237
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=83.95 E-value=1.6 Score=45.94 Aligned_cols=115 Identities=5% Similarity=-0.087 Sum_probs=72.4
Q ss_pred cccccCCCCccCCCCC-----------CccccccCccccc------ceEEEEecCCCCCCccEEecCCCCeEEEeC-C--
Q psy4900 361 STWKCDSENDCGDGSD-----------EGDFCSEKTCAYF------QFHAIVLGSNLTNPTDLALDPTSGLMFVAD-S-- 420 (485)
Q Consensus 361 ~~~~~~~~~~y~~d~~-----------~I~~~~~~~c~~g------~~~~~l~~~~~~~p~~iavD~~~~~lywtd-~-- 420 (485)
..|.|++..|++...+ .|.+.+++ + .....|.........++++.|..++|+|+. .
T Consensus 135 ~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~ 210 (662)
T 3azo_A 135 PVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLD----GSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHP 210 (662)
T ss_dssp EEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETT----STTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTT
T ss_pred cEECCCCCEEEEEEecccCCCCCCceeEEEEEECC----CCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCC
Confidence 4567787777664321 56677777 6 444333303334566788999988999886 2
Q ss_pred ------CcEEEEEcCCC----CcEEEEeCCCcccceEEEeCCCCeEEEEeCCCC--cEEEEEccCCCeEEEe
Q psy4900 421 ------NQILRTNMDGT----MAMSIVSEAAYKASGVALDINAKRLFWCDNLLD--YIETVDYEGKNRFLIL 480 (485)
Q Consensus 421 ------~~I~r~~~dG~----~~~~i~~~~~~~p~glavD~~~~~lYW~D~~~~--~I~~~~~dG~~r~~~~ 480 (485)
..|+..+++++ ..+.|.......+..++..+..+ ||++-...+ .|.+.++++...+.|.
T Consensus 211 ~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~ 281 (662)
T 3azo_A 211 RMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGAATQLC 281 (662)
T ss_dssp CCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCCEEESS
T ss_pred CCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCceeecc
Confidence 36999999853 33444433345667777766566 666655444 7888888666554444
No 238
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A
Probab=83.32 E-value=0.092 Score=49.46 Aligned_cols=40 Identities=28% Similarity=0.663 Sum_probs=29.3
Q ss_pred CCCCCCCCCCCcc--ccccccccCCCCCCccccCCCCccccCCCCCCCC
Q psy4900 258 SPNPCGSNNGGCE--HMCIITRASGNALGYKCACDIGYRLSVNGNNCNQ 304 (485)
Q Consensus 258 ~~~~C~~~~g~C~--~~C~n~~~~~~~g~~~C~C~~Gy~l~~d~~~C~~ 304 (485)
+.++|......|. ..|+|++ |+|.|.|..||. .|++.|.+
T Consensus 4 DiDEC~~~~~~C~~~a~C~Nt~-----Gsy~C~C~~Gy~--GnG~~C~d 45 (285)
T 1gl4_A 4 AQQTCANNRHQCSVHAECRDYA-----TGFCCRCVANYT--GNGRQCVA 45 (285)
T ss_dssp ---CHHHHGGGSCTTEEEEECS-----SCEEEEECTTEE--ECSSSEEE
T ss_pred cchhccCCCCCCCCCCEeEcCC-----CCeEEEcCCCCC--CCCCcCCC
Confidence 3445754345675 4699999 999999999996 57888876
No 239
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=83.08 E-value=2.7 Score=43.48 Aligned_cols=112 Identities=9% Similarity=-0.141 Sum_probs=74.1
Q ss_pred ccccCCCCccCC-CCC-CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC-C----CcEEEEEcCCCCcE
Q psy4900 362 TWKCDSENDCGD-GSD-EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD-S----NQILRTNMDGTMAM 434 (485)
Q Consensus 362 ~~~~~~~~~y~~-d~~-~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd-~----~~I~r~~~dG~~~~ 434 (485)
.|.+++..+++. .+. .+.+.+++ +.....+..... .+++++|...+|+++. . ..|++.++++...+
T Consensus 116 ~~s~dg~~~~~~s~~~~~~~l~d~~----~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~ 188 (582)
T 3o4h_A 116 SGVDTGEAVVFTGATEDRVALYALD----GGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR 188 (582)
T ss_dssp EEEECSSCEEEEEECSSCEEEEEEE----TTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE
T ss_pred eeCCCCCeEEEEecCCCCceEEEcc----CCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce
Confidence 456676655443 222 33345666 544444442222 6789999988998776 2 67999999877766
Q ss_pred EEEeCCCcccceEEEeCCCCeEEEEeCCC-CcEEEEEccCCCeEEEecC
Q psy4900 435 SIVSEAAYKASGVALDINAKRLFWCDNLL-DYIETVDYEGKNRFLILRG 482 (485)
Q Consensus 435 ~i~~~~~~~p~glavD~~~~~lYW~D~~~-~~I~~~~~dG~~r~~~~~~ 482 (485)
.|. ........+++.+..+.||..+... ..|.+.++++...+ ++.+
T Consensus 189 ~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~ 235 (582)
T 3o4h_A 189 VFD-SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLEL 235 (582)
T ss_dssp EEC-CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCC
T ss_pred Eee-cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccC
Confidence 654 4445568899998899999555432 38999999988776 5543
No 240
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=82.69 E-value=2.6 Score=41.00 Aligned_cols=101 Identities=11% Similarity=-0.017 Sum_probs=64.4
Q ss_pred CCCccCCCCC-------CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC-----------CCcEEEEEc
Q psy4900 367 SENDCGDGSD-------EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD-----------SNQILRTNM 428 (485)
Q Consensus 367 ~~~~y~~d~~-------~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd-----------~~~I~r~~~ 428 (485)
+..+|..+.+ .|.+.+..+ +....++-. + ..| +|+++|..++||-+. ...|...++
T Consensus 15 ~~~~yv~~~~~~~~~d~~v~v~D~~t---~~~~~~i~~-g-~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~ 88 (361)
T 2oiz_A 15 ENRIYVMDSVFMHLTESRVHVYDYTN---GKFLGMVPT-A-FNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDA 88 (361)
T ss_dssp GGEEEEEECCGGGGGGCEEEEEETTT---CCEEEEEEC-C-EEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEET
T ss_pred CCEEEEECCCCCccccCeEEEEECCC---CeEEEEecC-C-CCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEEC
Confidence 3456665432 455555431 444444332 2 458 999999999999986 234777776
Q ss_pred CCCC-cEEEEeC-----CCcccceEEEeCCCCeEEEEeCC-CCcEEEEEccC
Q psy4900 429 DGTM-AMSIVSE-----AAYKASGVALDINAKRLFWCDNL-LDYIETVDYEG 473 (485)
Q Consensus 429 dG~~-~~~i~~~-----~~~~p~glavD~~~~~lYW~D~~-~~~I~~~~~dG 473 (485)
.... ..+|-.. ....|.+|+|++..++||-+... .+.|.+.+++.
T Consensus 89 ~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~ 140 (361)
T 2oiz_A 89 DKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAK 140 (361)
T ss_dssp TTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTT
T ss_pred cCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCC
Confidence 5322 2223211 13579999999999999999865 57788877664
No 241
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A
Probab=82.25 E-value=0.18 Score=47.53 Aligned_cols=30 Identities=23% Similarity=0.532 Sum_probs=26.3
Q ss_pred ccccCCCCCCeeeCCCCceeeCCCCCCCCcch
Q psy4900 186 FTCQASPTGGVCQCPEGQKVANDSRTCLLYMK 217 (485)
Q Consensus 186 ~~C~n~~~~~~C~C~~G~~l~~~~~~C~d~~e 217 (485)
..|.|++|+|.|.|++||. .+++.|.|+++
T Consensus 19 a~C~Nt~Gsy~C~C~~Gy~--GnG~~C~d~d~ 48 (285)
T 1gl4_A 19 AECRDYATGFCCRCVANYT--GNGRQCVAEGS 48 (285)
T ss_dssp EEEEECSSCEEEEECTTEE--ECSSSEEETTC
T ss_pred CEeEcCCCCeEEEcCCCCC--CCCCcCCCCCC
Confidence 5799999999999999997 46788998776
No 242
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=82.01 E-value=4.9 Score=39.41 Aligned_cols=72 Identities=3% Similarity=0.003 Sum_probs=49.5
Q ss_pred CCcc---EEecCCCCeEEEeCC---C-------cEEEEEcCCCCcEEEEeCCCc-ccceEEEeCCCCeEEEEeC-CCCcE
Q psy4900 402 NPTD---LALDPTSGLMFVADS---N-------QILRTNMDGTMAMSIVSEAAY-KASGVALDINAKRLFWCDN-LLDYI 466 (485)
Q Consensus 402 ~p~~---iavD~~~~~lywtd~---~-------~I~r~~~dG~~~~~i~~~~~~-~p~glavD~~~~~lYW~D~-~~~~I 466 (485)
.|.+ +++++..++||.+.. . .+...++. .++++-.-.+. .|.||++.+..++||.+-. ..+.|
T Consensus 262 ~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~--t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~V 339 (368)
T 1mda_H 262 RSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS--VGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVL 339 (368)
T ss_dssp EECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESS--SCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEE
T ss_pred ccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECC--CCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeE
Confidence 3555 899999999998642 2 34444443 33333221122 6999999988888999988 68999
Q ss_pred EEEEccCCC
Q psy4900 467 ETVDYEGKN 475 (485)
Q Consensus 467 ~~~~~dG~~ 475 (485)
.+.++....
T Consensus 340 sVID~~t~k 348 (368)
T 1mda_H 340 DIYDAASDQ 348 (368)
T ss_dssp EEEESSSCE
T ss_pred EEEECCCCc
Confidence 999987543
No 243
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=81.87 E-value=6.8 Score=37.86 Aligned_cols=66 Identities=15% Similarity=0.185 Sum_probs=47.1
Q ss_pred cEEecCCCCeEEEeCC------------CcEEEEEcCCCCcEEEEeCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEcc
Q psy4900 405 DLALDPTSGLMFVADS------------NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYE 472 (485)
Q Consensus 405 ~iavD~~~~~lywtd~------------~~I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~d 472 (485)
.+++++..++||-+.. ..|...++.......-+.... |.+|++++..++||-+.. +.|.+.++.
T Consensus 258 ~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~--~~v~v~D~~ 333 (361)
T 2oiz_A 258 LVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG--GNVNVYDIS 333 (361)
T ss_dssp CEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS--SCEEEEECS
T ss_pred EEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC--CeEEEEECC
Confidence 4999999999997631 357777765433222232232 999999999999998764 889998877
Q ss_pred CC
Q psy4900 473 GK 474 (485)
Q Consensus 473 G~ 474 (485)
..
T Consensus 334 t~ 335 (361)
T 2oiz_A 334 QP 335 (361)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 244
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=81.63 E-value=6 Score=37.06 Aligned_cols=71 Identities=10% Similarity=0.131 Sum_probs=50.7
Q ss_pred ccEEecCCCCeEEEeC--CCcEEEEEcCCCCcEEEEe-CCCcccceEEEeCCCCeEEEEeCCCCcEEEEEccCCC
Q psy4900 404 TDLALDPTSGLMFVAD--SNQILRTNMDGTMAMSIVS-EAAYKASGVALDINAKRLFWCDNLLDYIETVDYEGKN 475 (485)
Q Consensus 404 ~~iavD~~~~~lywtd--~~~I~r~~~dG~~~~~i~~-~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG~~ 475 (485)
.|+++.+ .+.+|.+. .++|...++........+. .....|.++++++..++||.+....+.|.+.++....
T Consensus 3 ~g~~~~~-~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~ 76 (349)
T 1jmx_B 3 TGPALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK 76 (349)
T ss_dssp -CCCCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred ccccccC-CCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc
Confidence 4666664 46778777 6889998887543332332 2223699999998888899999888999999987544
No 245
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=81.14 E-value=4.4 Score=43.09 Aligned_cols=112 Identities=7% Similarity=-0.002 Sum_probs=75.5
Q ss_pred cccccCCCCccCCCC-C------CccccccCcccccceEEEEecCCCC------------------------CCccEEec
Q psy4900 361 STWKCDSENDCGDGS-D------EGDFCSEKTCAYFQFHAIVLGSNLT------------------------NPTDLALD 409 (485)
Q Consensus 361 ~~~~~~~~~~y~~d~-~------~I~~~~~~~c~~g~~~~~l~~~~~~------------------------~p~~iavD 409 (485)
..|.+++..+++... + .|.+.++. +.....++..... ...++++.
T Consensus 42 ~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S 117 (741)
T 2ecf_A 42 PKVAPDGSRVTFLRGKDSDRNQLDLWSYDIG----SGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS 117 (741)
T ss_dssp EEECTTSSEEEEEECCSSCTTEEEEEEEETT----TCCEEEEECGGGTC--------------------CCEESCCCEEC
T ss_pred ceEecCCCEEEEEeccCCCCcccEEEEEECC----CCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC
Confidence 456777777766433 2 46666766 4444444432211 25688999
Q ss_pred CCCCeEEEeCCCcEEEEEcCCC---CcEEEEeCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEccCCCeEEE
Q psy4900 410 PTSGLMFVADSNQILRTNMDGT---MAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEGKNRFLI 479 (485)
Q Consensus 410 ~~~~~lywtd~~~I~r~~~dG~---~~~~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG~~r~~~ 479 (485)
|...+|+++....|+..++++. ..+.+. .....+..+++.+..++|+++. .+.|.+.++++...+.+
T Consensus 118 pDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~-~~~~~~~~~~~SPDG~~la~~~--~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 118 PDAQRLLFPLGGELYLYDLKQEGKAAVRQLT-HGEGFATDAKLSPKGGFVSFIR--GRNLWVIDLASGRQMQL 187 (741)
T ss_dssp TTSSEEEEEETTEEEEEESSSCSTTSCCBCC-CSSSCEEEEEECTTSSEEEEEE--TTEEEEEETTTTEEEEC
T ss_pred CCCCEEEEEeCCcEEEEECCCCCcceEEEcc-cCCcccccccCCCCCCEEEEEe--CCcEEEEecCCCCEEEe
Confidence 9988898888889999999977 444443 2334578889988888888876 35788888887654443
No 246
>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A
Probab=80.49 E-value=0.2 Score=35.53 Aligned_cols=28 Identities=25% Similarity=0.555 Sum_probs=21.0
Q ss_pred ccccCCCCCCeeeCCCCceeeCCCCCCCCcc
Q psy4900 186 FTCQASPTGGVCQCPEGQKVANDSRTCLLYM 216 (485)
Q Consensus 186 ~~C~n~~~~~~C~C~~G~~l~~~~~~C~d~~ 216 (485)
..|.+++++|.|.|++||.+ +..|.+..
T Consensus 25 gtC~~~~g~y~C~C~~Gy~~---G~~C~~~~ 52 (61)
T 2k2s_B 25 GTCKETNSGYICRCNQGYRI---SLDGTGNV 52 (61)
T ss_dssp CEEEECSSEEEEECCTTEEE---EECSSSCE
T ss_pred cccccCCCceEeECCCCCcc---CCCCCCCC
Confidence 36999999999999999973 23465443
No 247
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Probab=78.79 E-value=2.3 Score=40.95 Aligned_cols=17 Identities=41% Similarity=1.124 Sum_probs=0.0
Q ss_pred CccccCCCCccccCCCCCCCC
Q psy4900 284 GYKCACDIGYRLSVNGNNCNQ 304 (485)
Q Consensus 284 ~~~C~C~~Gy~l~~d~~~C~~ 304 (485)
.++|.|++||. +..|..
T Consensus 292 ~~~C~C~~G~~----G~~C~~ 308 (324)
T 2ygq_A 292 PNKCQCQEGWH----GRHCNK 308 (324)
T ss_dssp ---------------------
T ss_pred CCEeECCCCCc----CCCCCC
Confidence 47899999995 566653
No 248
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=78.58 E-value=4.5 Score=42.84 Aligned_cols=113 Identities=11% Similarity=0.182 Sum_probs=67.3
Q ss_pred cccccCCCCccCCC--CC----CccccccCcccccc-eEEEEecCC----CCCCccEEecC--CCCeEEEeC---CCcEE
Q psy4900 361 STWKCDSENDCGDG--SD----EGDFCSEKTCAYFQ-FHAIVLGSN----LTNPTDLALDP--TSGLMFVAD---SNQIL 424 (485)
Q Consensus 361 ~~~~~~~~~~y~~d--~~----~I~~~~~~~c~~g~-~~~~l~~~~----~~~p~~iavD~--~~~~lywtd---~~~I~ 424 (485)
..|.+++..++... .. .|.+.++. .. ....+.... +....++++.| ..++||.++ ..+|+
T Consensus 263 ~~~spdg~~l~~~~~~~~~~~~~v~~~d~~----~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~ 338 (706)
T 2z3z_A 263 LSWSPDENILYVAEVNRAQNECKVNAYDAE----TGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLY 338 (706)
T ss_dssp EEECTTSSEEEEEEECTTSCEEEEEEEETT----TCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEE
T ss_pred EEEECCCCEEEEEEeCCCCCeeEEEEEECC----CCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEE
Confidence 45778877777632 21 55566665 33 334443211 11235688887 544555454 35788
Q ss_pred EEEcCCCCcEEEEeCCCcccce-EEEeCCCCeEEEEeCCCC----cEEEEEccCCCeEE
Q psy4900 425 RTNMDGTMAMSIVSEAAYKASG-VALDINAKRLFWCDNLLD----YIETVDYEGKNRFL 478 (485)
Q Consensus 425 r~~~dG~~~~~i~~~~~~~p~g-lavD~~~~~lYW~D~~~~----~I~~~~~dG~~r~~ 478 (485)
..+++|...+.|.. ....... +++++..++||.+-...+ .|++.++++...+.
T Consensus 339 ~~~~~~~~~~~l~~-~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 396 (706)
T 2z3z_A 339 LYDTTGRLIRQVTK-GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKD 396 (706)
T ss_dssp EEETTSCEEEECCC-SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEE
T ss_pred EEECCCCEEEecCC-CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCcee
Confidence 88877765554432 2222334 788888899999876654 78888887765444
No 249
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=78.41 E-value=1.6 Score=42.12 Aligned_cols=72 Identities=10% Similarity=0.054 Sum_probs=44.6
Q ss_pred ccccCCCCccCCC-CC---CccccccCcccccceEEEEecCCCCCCc-cEEecCCCCeEEEeC-CCcEEEEEcCCCCcEE
Q psy4900 362 TWKCDSENDCGDG-SD---EGDFCSEKTCAYFQFHAIVLGSNLTNPT-DLALDPTSGLMFVAD-SNQILRTNMDGTMAMS 435 (485)
Q Consensus 362 ~~~~~~~~~y~~d-~~---~I~~~~~~~c~~g~~~~~l~~~~~~~p~-~iavD~~~~~lywtd-~~~I~r~~~dG~~~~~ 435 (485)
.|.|++..+.+.. .+ .|.+.++. +.....+. ....... ++++.|..++|+|+. ...|+..++++...+.
T Consensus 42 ~~SpdG~~l~~~~~~~g~~~l~~~d~~----~~~~~~l~-~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~ 116 (396)
T 3c5m_A 42 CFTQDGKKLLFAGDFDGNRNYYLLNLE----TQQAVQLT-EGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV 116 (396)
T ss_dssp CBCTTSCEEEEEECTTSSCEEEEEETT----TTEEEECC-CSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred cCCCCCCEEEEEEecCCCceEEEEECC----CCcEEEee-cCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE
Confidence 4566776655432 21 56666666 55444433 2222323 377888888898877 5679999999877666
Q ss_pred EEe
Q psy4900 436 IVS 438 (485)
Q Consensus 436 i~~ 438 (485)
+..
T Consensus 117 ~~~ 119 (396)
T 3c5m_A 117 IYT 119 (396)
T ss_dssp EEE
T ss_pred EEe
Confidence 655
No 250
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=77.80 E-value=12 Score=34.73 Aligned_cols=95 Identities=7% Similarity=-0.073 Sum_probs=60.9
Q ss_pred CccccccCcccccceEEEEec-C----CCCCCccEEecCCCCeEEEeC--CCcEEEEEcCCCCcEEEEeCCCcccceEEE
Q psy4900 377 EGDFCSEKTCAYFQFHAIVLG-S----NLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVAL 449 (485)
Q Consensus 377 ~I~~~~~~~c~~g~~~~~l~~-~----~~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~~~~i~~~~~~~p~glav 449 (485)
+|...+.+ |.....+-. . ....|+++++++. |.+++++ .++|...+.+|.....+-.. .+|.++++
T Consensus 100 ~v~~vd~~----Gk~l~~~~~~~~~~~~~~~~~~v~~~~~-G~~lv~~~~~~~v~~~d~~G~~~w~~~~~--~~~~~~~~ 172 (276)
T 3no2_A 100 TILEVNMK----GEVLSKTEFETGIERPHAQFRQINKNKK-GNYLVPLFATSEVREIAPNGQLLNSVKLS--GTPFSSAF 172 (276)
T ss_dssp EEEEECTT----SCEEEEEEECCSCSSGGGSCSCCEECTT-SCEEEEETTTTEEEEECTTSCEEEEEECS--SCCCEEEE
T ss_pred EEEEEeCC----CCEEEEEeccCCCCcccccccCceECCC-CCEEEEecCCCEEEEECCCCCEEEEEECC--CCccceeE
Confidence 45545556 665443321 1 1235778888876 4555566 68899988887654444322 46888887
Q ss_pred eCCCCeEEEEeCCCCcEEEEEcc-CCCeEEE
Q psy4900 450 DINAKRLFWCDNLLDYIETVDYE-GKNRFLI 479 (485)
Q Consensus 450 D~~~~~lYW~D~~~~~I~~~~~d-G~~r~~~ 479 (485)
. ..+++|.++...++|...+.+ |+..-.+
T Consensus 173 ~-~~g~~~v~~~~~~~v~~~d~~tG~~~w~~ 202 (276)
T 3no2_A 173 L-DNGDCLVACGDAHCFVQLNLESNRIVRRV 202 (276)
T ss_dssp C-TTSCEEEECBTTSEEEEECTTTCCEEEEE
T ss_pred c-CCCCEEEEeCCCCeEEEEeCcCCcEEEEe
Confidence 6 467777777777788888888 7765554
No 251
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=77.64 E-value=11 Score=39.84 Aligned_cols=115 Identities=9% Similarity=0.098 Sum_probs=73.0
Q ss_pred cccccCCCCccCCCCCCccccccCcccccceEEEEecCCCC---CCccEEecCCCCeEEEeC-C---------CcEEEEE
Q psy4900 361 STWKCDSENDCGDGSDEGDFCSEKTCAYFQFHAIVLGSNLT---NPTDLALDPTSGLMFVAD-S---------NQILRTN 427 (485)
Q Consensus 361 ~~~~~~~~~~y~~d~~~I~~~~~~~c~~g~~~~~l~~~~~~---~p~~iavD~~~~~lywtd-~---------~~I~r~~ 427 (485)
..|.+++..+|-...+.|.+.+.. +.....++...-. .+.++++.|...+|.++. . ..|+..+
T Consensus 22 ~~~spdg~~~~~~~dg~i~~~d~~----~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d 97 (723)
T 1xfd_A 22 AKWISDTEFIYREQKGTVRLWNVE----TNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK 97 (723)
T ss_dssp CCBSSSSCBCCCCSSSCEEEBCGG----GCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred cEEcCCCcEEEEeCCCCEEEEECC----CCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEE
Confidence 467788775554322367777766 4444444433221 478899999988887764 1 5688888
Q ss_pred cCCCCcEEEEeCCC--cccceEEEeCCCCeEEEEeCCCCcEEEEEccCCCeEEEec
Q psy4900 428 MDGTMAMSIVSEAA--YKASGVALDINAKRLFWCDNLLDYIETVDYEGKNRFLILR 481 (485)
Q Consensus 428 ~dG~~~~~i~~~~~--~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG~~r~~~~~ 481 (485)
+++...+.|..... ..+..+++.+..++|.++.. +.|.+.++++...+.+..
T Consensus 98 ~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~--~~i~~~~~~~g~~~~~~~ 151 (723)
T 1xfd_A 98 IPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE--NNIYYCAHVGKQAIRVVS 151 (723)
T ss_dssp SSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET--TEEEEESSSSSCCEEEEC
T ss_pred CCCCceEeccCCccccccccccEECCCCCEEEEEEC--CeEEEEECCCCceEEEec
Confidence 88766544432221 12567788888888888764 678888888766555443
No 252
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=75.60 E-value=3.6 Score=43.84 Aligned_cols=95 Identities=12% Similarity=0.119 Sum_probs=63.6
Q ss_pred cccccCCCCccCCCCCCccccccCcccccc---eEEEEecCCCCCCccEEecCCCCeEEEeCCCcEEEEEcCCCCcEEEE
Q psy4900 361 STWKCDSENDCGDGSDEGDFCSEKTCAYFQ---FHAIVLGSNLTNPTDLALDPTSGLMFVADSNQILRTNMDGTMAMSIV 437 (485)
Q Consensus 361 ~~~~~~~~~~y~~d~~~I~~~~~~~c~~g~---~~~~l~~~~~~~p~~iavD~~~~~lywtd~~~I~r~~~dG~~~~~i~ 437 (485)
..|.|++..+++.....|.+.+++ +. ....+. .....+..+++.|..++|+++....|+..++++.....+.
T Consensus 114 ~~~SpDg~~l~~~~~~~i~~~d~~----~~~~~~~~~l~-~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~ 188 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLGGELYLYDLK----QEGKAAVRQLT-HGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLT 188 (741)
T ss_dssp CEECTTSSEEEEEETTEEEEEESS----SCSTTSCCBCC-CSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECC
T ss_pred eEECCCCCEEEEEeCCcEEEEECC----CCCcceEEEcc-cCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEec
Confidence 456777777766555667777766 44 332322 3334577899999988888888778999999876544443
Q ss_pred eCCCc----------------ccceEEEeCCCCeEEEEe
Q psy4900 438 SEAAY----------------KASGVALDINAKRLFWCD 460 (485)
Q Consensus 438 ~~~~~----------------~p~glavD~~~~~lYW~D 460 (485)
..... .+.++++.+..++|+++.
T Consensus 189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~ 227 (741)
T 2ecf_A 189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYAR 227 (741)
T ss_dssp CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEE
T ss_pred cCCccceeccccceeeeeccccccceEECCCCCEEEEEE
Confidence 32211 147789888888888874
No 253
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=75.12 E-value=17 Score=33.40 Aligned_cols=109 Identities=14% Similarity=0.058 Sum_probs=63.0
Q ss_pred ccccCCCCccCCCCC-CccccccCcccccce--EEEEecCCCCCCccEEecCCCCeEEEeC-CCcEEEEEcCCCCcEEEE
Q psy4900 362 TWKCDSENDCGDGSD-EGDFCSEKTCAYFQF--HAIVLGSNLTNPTDLALDPTSGLMFVAD-SNQILRTNMDGTMAMSIV 437 (485)
Q Consensus 362 ~~~~~~~~~y~~d~~-~I~~~~~~~c~~g~~--~~~l~~~~~~~p~~iavD~~~~~lywtd-~~~I~r~~~dG~~~~~i~ 437 (485)
.+.+++..++....+ .|.+.++. ... ....+........+|++.|...+|+... .+.|...++........+
T Consensus 104 ~~~~~~~~l~~~~~d~~i~~~d~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~ 179 (337)
T 1gxr_A 104 KLLPDGCTLIVGGEASTLSIWDLA----APTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF 179 (337)
T ss_dssp EECTTSSEEEEEESSSEEEEEECC----CC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EEcCCCCEEEEEcCCCcEEEEECC----CCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeee
Confidence 344444444443333 45555554 322 2222334445567899998777777666 678888888765544444
Q ss_pred eCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEccCCC
Q psy4900 438 SEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEGKN 475 (485)
Q Consensus 438 ~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG~~ 475 (485)
......+..|++.+..+.|+-. ...+.|...++....
T Consensus 180 ~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~ 216 (337)
T 1gxr_A 180 QGHTDGASCIDISNDGTKLWTG-GLDNTVRSWDLREGR 216 (337)
T ss_dssp CCCSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTTE
T ss_pred ecccCceEEEEECCCCCEEEEE-ecCCcEEEEECCCCc
Confidence 4445567788888765555544 345667766665443
No 254
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=74.65 E-value=5.9 Score=44.42 Aligned_cols=96 Identities=16% Similarity=0.148 Sum_probs=65.9
Q ss_pred Ccc-ccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC-CCcEEEEEcCCCCcEEEEeCCCcccceEEEeCCCC
Q psy4900 377 EGD-FCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD-SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAK 454 (485)
Q Consensus 377 ~I~-~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd-~~~I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~ 454 (485)
.|. +.++. +.....+. .....+..+++.|...+|+++. ...|+..++.+...+.++........++++.+..+
T Consensus 359 ~l~~~~d~~----~~~~~~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~ 433 (1045)
T 1k32_A 359 DFLGIYDYR----TGKAEKFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSR 433 (1045)
T ss_dssp EEEEEEETT----TCCEEECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSC
T ss_pred ceEEEEECC----CCCceEec-CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCC
Confidence 444 45555 44433433 4445677899999988888877 67899999987666666655445567889888888
Q ss_pred eEEEEeCCC---------CcEEEEEccCCCeE
Q psy4900 455 RLFWCDNLL---------DYIETVDYEGKNRF 477 (485)
Q Consensus 455 ~lYW~D~~~---------~~I~~~~~dG~~r~ 477 (485)
+|.|+.... ..|...++++...+
T Consensus 434 ~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~ 465 (1045)
T 1k32_A 434 FIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF 465 (1045)
T ss_dssp EEEEEEEECSSTTCSCCEEEEEEEETTTTEEE
T ss_pred eEEEEecCccccccCCCCCeEEEEECCCCcEE
Confidence 888875422 47888888765433
No 255
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=74.13 E-value=7 Score=40.91 Aligned_cols=113 Identities=11% Similarity=-0.041 Sum_probs=60.8
Q ss_pred cccccCCCCccCCCC---------CCccccccCcccccc----eEEEEecCCCCCCccEEecCCCCeEEEeC-C--CcEE
Q psy4900 361 STWKCDSENDCGDGS---------DEGDFCSEKTCAYFQ----FHAIVLGSNLTNPTDLALDPTSGLMFVAD-S--NQIL 424 (485)
Q Consensus 361 ~~~~~~~~~~y~~d~---------~~I~~~~~~~c~~g~----~~~~l~~~~~~~p~~iavD~~~~~lywtd-~--~~I~ 424 (485)
..|.|++..|++... ..|.+.+++ ++ ....+.......+..+++.|....+|-++ . .+|+
T Consensus 193 ~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~----~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~ 268 (662)
T 3azo_A 193 PRLSPDGRQAVWLAWDHPRMPWEGTELKTARVT----EDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLH 268 (662)
T ss_dssp CEECTTSSEEEEEEECTTCCTTTCEEEEEEEEC----TTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEE
T ss_pred ceECCCCCEEEEEECCCCCCCCCCcEEEEEEEC----CCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEE
Confidence 457788877776432 146666665 42 33344332235567788888766444444 3 3799
Q ss_pred EEEcCCCCcEEEEeCCCcc--------cceEEEeCCCCeEEEEeC-CCCcEEEEEccCCCeEE
Q psy4900 425 RTNMDGTMAMSIVSEAAYK--------ASGVALDINAKRLFWCDN-LLDYIETVDYEGKNRFL 478 (485)
Q Consensus 425 r~~~dG~~~~~i~~~~~~~--------p~glavD~~~~~lYW~D~-~~~~I~~~~~dG~~r~~ 478 (485)
+.++++...+.|+...... ...+++.. .++||++-. +..+|.+++++|...+.
T Consensus 269 ~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~d~~~~~~~~ 330 (662)
T 3azo_A 269 RVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLA-NGLIAVVHGKGAAVLGILDPESGELVD 330 (662)
T ss_dssp EECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECT-TSCEEEEEBSSSCEEEEEETTTTEEEE
T ss_pred EEECCCCceeecccccccccCccccccCceEeEeC-CCEEEEEEEcCccEEEEEECCCCcEEE
Confidence 9988666555554322111 23455533 344444433 33456666776555443
No 256
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=73.35 E-value=11 Score=35.51 Aligned_cols=73 Identities=10% Similarity=0.120 Sum_probs=48.9
Q ss_pred CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC--C----CcEEEEEcCCCCcEEEEeCCCcccceEEEe
Q psy4900 377 EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD--S----NQILRTNMDGTMAMSIVSEAAYKASGVALD 450 (485)
Q Consensus 377 ~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd--~----~~I~r~~~dG~~~~~i~~~~~~~p~glavD 450 (485)
.|.+.+++ +.....| ..+..+++.|...+|+|+. . ..|+..++++...+.+..... +.+++..
T Consensus 44 ~l~~~d~~----~~~~~~l-----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~~ws 112 (347)
T 2gop_A 44 TIVIENLK----NNARRFI-----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN--IRSLEWN 112 (347)
T ss_dssp EEEEEETT----TCCEEEE-----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE--EEEEEEC
T ss_pred eEEEEeCC----CCceEEc-----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC--ccceeEC
Confidence 45555665 4444333 3466788999888888876 2 249999998866555554332 6778877
Q ss_pred CCCCeEEEEe
Q psy4900 451 INAKRLFWCD 460 (485)
Q Consensus 451 ~~~~~lYW~D 460 (485)
+..++|+++.
T Consensus 113 pdg~~l~~~~ 122 (347)
T 2gop_A 113 EDSRKLLIVG 122 (347)
T ss_dssp TTSSEEEEEE
T ss_pred CCCCEEEEEE
Confidence 7788888774
No 257
>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A
Probab=73.16 E-value=0.69 Score=32.71 Aligned_cols=18 Identities=50% Similarity=1.126 Sum_probs=16.2
Q ss_pred cccccccCCCCCCccccCCCCcc
Q psy4900 272 MCIITRASGNALGYKCACDIGYR 294 (485)
Q Consensus 272 ~C~n~~~~~~~g~~~C~C~~Gy~ 294 (485)
.|+++. ++|.|.|++||.
T Consensus 26 tC~~~~-----g~y~C~C~~Gy~ 43 (61)
T 2k2s_B 26 TCKETN-----SGYICRCNQGYR 43 (61)
T ss_dssp EEEECS-----SEEEEECCTTEE
T ss_pred ccccCC-----CceEeECCCCCc
Confidence 588888 999999999995
No 258
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=72.80 E-value=19 Score=34.28 Aligned_cols=78 Identities=13% Similarity=0.165 Sum_probs=53.5
Q ss_pred CccEEecCCCCeEEEeC----CCcEEEEEcCCCCcEEEEeCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEccCCCeEE
Q psy4900 403 PTDLALDPTSGLMFVAD----SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEGKNRFL 478 (485)
Q Consensus 403 p~~iavD~~~~~lywtd----~~~I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG~~r~~ 478 (485)
+..+++.|...+|+|+. ...|+..++++...+.+.........++++.+..++|+++... +.|.+.++++...+.
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~-~~l~~~d~~~~~~~~ 116 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNE-LNLMKVDLETLEEQV 116 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETT-TEEEEEETTTCCEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcC-CcEEEEECCCCCcEE
Confidence 56778888888887774 3478888888766544433222222336777888899888654 479999998877666
Q ss_pred Eec
Q psy4900 479 ILR 481 (485)
Q Consensus 479 ~~~ 481 (485)
|..
T Consensus 117 ~~~ 119 (396)
T 3c5m_A 117 IYT 119 (396)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
No 259
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=72.28 E-value=51 Score=30.64 Aligned_cols=107 Identities=13% Similarity=0.027 Sum_probs=61.3
Q ss_pred ccccCCCCccCCCCC-CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC-CCcEEEEEcCCCCcEEEEeC
Q psy4900 362 TWKCDSENDCGDGSD-EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD-SNQILRTNMDGTMAMSIVSE 439 (485)
Q Consensus 362 ~~~~~~~~~y~~d~~-~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd-~~~I~r~~~dG~~~~~i~~~ 439 (485)
.+.+++..+.....+ .|.+.++. .......+........+|++.|...+|+-.. ...|..-++........+..
T Consensus 171 ~~spdg~~lasg~~dg~i~iwd~~----~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 246 (321)
T 3ow8_A 171 AYSPDGKYLASGAIDGIINIFDIA----TGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG 246 (321)
T ss_dssp EECTTSSEEEEEETTSCEEEEETT----TTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECC
T ss_pred EECCCCCEEEEEcCCCeEEEEECC----CCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcC
Confidence 344554444433333 55555554 3222233334445578899999877766655 67788888876555444544
Q ss_pred CCcccceEEEeCCCCeEEEEeCCCCcEEEEEccC
Q psy4900 440 AAYKASGVALDINAKRLFWCDNLLDYIETVDYEG 473 (485)
Q Consensus 440 ~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG 473 (485)
....+..|++.+....|+-. ...+.|..-++..
T Consensus 247 h~~~v~~~~~sp~~~~l~s~-s~D~~v~iwd~~~ 279 (321)
T 3ow8_A 247 HASWVLNVAFCPDDTHFVSS-SSDKSVKVWDVGT 279 (321)
T ss_dssp CSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTT
T ss_pred CCCceEEEEECCCCCEEEEE-eCCCcEEEEeCCC
Confidence 45567778887665555433 3345565555543
No 260
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=71.46 E-value=18 Score=34.36 Aligned_cols=74 Identities=9% Similarity=0.135 Sum_probs=51.1
Q ss_pred EEecCCCCeEEEeC----CCcEEEEEcCCCCcEEEEeCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEccCCCeEEEe
Q psy4900 406 LALDPTSGLMFVAD----SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEGKNRFLIL 480 (485)
Q Consensus 406 iavD~~~~~lywtd----~~~I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG~~r~~~~ 480 (485)
.++.|...+|+++. ...|+..++++...+.+.........++++.+..++||++.. ...|.+.++++...+.++
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~-~~~l~~~d~~~g~~~~~~ 118 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKD-GRNLMRVDLATLEENVVY 118 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEET-TTEEEEEETTTCCEEEEE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeC-CCeEEEEECCCCcceeee
Confidence 46777777677665 235999999887766555433223336788888999999874 357888888877665554
No 261
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=71.33 E-value=36 Score=31.08 Aligned_cols=110 Identities=7% Similarity=-0.024 Sum_probs=65.8
Q ss_pred cccCCCCccCCCCC-CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC-CCcEEEEEcCCCCcEEEEeCC
Q psy4900 363 WKCDSENDCGDGSD-EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD-SNQILRTNMDGTMAMSIVSEA 440 (485)
Q Consensus 363 ~~~~~~~~y~~d~~-~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd-~~~I~r~~~dG~~~~~i~~~~ 440 (485)
+.+++..++....+ .|.+.++. .......+......+.+|++.|...+|+-.. ...|...++........+. .
T Consensus 149 ~~~~~~~l~~~~~dg~v~~~d~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~ 223 (337)
T 1gxr_A 149 ISPDSKVCFSCCSDGNIAVWDLH----NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-F 223 (337)
T ss_dssp ECTTSSEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-C
T ss_pred ECCCCCEEEEEeCCCcEEEEeCC----CCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-C
Confidence 34444444443333 56666665 3333333444456678899998776666655 6788888887654333332 2
Q ss_pred CcccceEEEeCCCCeEEEEeCCCCcEEEEEccCCCeEE
Q psy4900 441 AYKASGVALDINAKRLFWCDNLLDYIETVDYEGKNRFL 478 (485)
Q Consensus 441 ~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG~~r~~ 478 (485)
...+..+++.+..+.|+... ..+.|...++.......
T Consensus 224 ~~~v~~~~~s~~~~~l~~~~-~~~~i~~~~~~~~~~~~ 260 (337)
T 1gxr_A 224 TSQIFSLGYCPTGEWLAVGM-ESSNVEVLHVNKPDKYQ 260 (337)
T ss_dssp SSCEEEEEECTTSSEEEEEE-TTSCEEEEETTSSCEEE
T ss_pred CCceEEEEECCCCCEEEEEc-CCCcEEEEECCCCCeEE
Confidence 34567788877766666554 45667777777655443
No 262
>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1
Probab=71.08 E-value=2.1 Score=27.86 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=18.3
Q ss_pred cccc--CCCCCCeeeCCCCceeeCCCCCCC
Q psy4900 186 FTCQ--ASPTGGVCQCPEGQKVANDSRTCL 213 (485)
Q Consensus 186 ~~C~--n~~~~~~C~C~~G~~l~~~~~~C~ 213 (485)
..|. +..++|+|.|++||. ++.|.
T Consensus 15 g~C~~~~~~~~~~C~C~~G~~----G~~Ce 40 (45)
T 1a3p_A 15 GVXMHIESLDSYTCNCVIGYS----GDRCQ 40 (45)
T ss_dssp CEEEECTTTSSEEEECCTTEE----TTTTC
T ss_pred CEEEeecCCCCEEEEcCCCCc----CCcCC
Confidence 3676 677899999999995 44564
No 263
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=70.92 E-value=41 Score=31.15 Aligned_cols=95 Identities=4% Similarity=0.006 Sum_probs=56.4
Q ss_pred cccCCCCccCCCCC-CccccccCccccc-ceEEEEecCCCCCCccEEecCCCCeEEEeC-CCcEEEEEcCCCCcEEEEeC
Q psy4900 363 WKCDSENDCGDGSD-EGDFCSEKTCAYF-QFHAIVLGSNLTNPTDLALDPTSGLMFVAD-SNQILRTNMDGTMAMSIVSE 439 (485)
Q Consensus 363 ~~~~~~~~y~~d~~-~I~~~~~~~c~~g-~~~~~l~~~~~~~p~~iavD~~~~~lywtd-~~~I~r~~~dG~~~~~i~~~ 439 (485)
+.+++..++....+ .|.+.++. . ......+......+.+|++.|...+|+-.. ...|...++........+.
T Consensus 183 ~~~~~~~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~- 257 (369)
T 3zwl_B 183 WSTKGKYIIAGHKDGKISKYDVS----NNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE- 257 (369)
T ss_dssp ECGGGCEEEEEETTSEEEEEETT----TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-
T ss_pred EcCCCCEEEEEcCCCEEEEEECC----CCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-
Confidence 34444444443333 55555655 3 333333334455677899999776666655 6788888887554444443
Q ss_pred CCcccceEEEeCCCCeEEEEeCC
Q psy4900 440 AAYKASGVALDINAKRLFWCDNL 462 (485)
Q Consensus 440 ~~~~p~glavD~~~~~lYW~D~~ 462 (485)
.-..+..+++.+..+.|+.....
T Consensus 258 ~~~~~~~~~~~~~~~~l~~~~~~ 280 (369)
T 3zwl_B 258 TDCPLNTAVITPLKEFIILGGGQ 280 (369)
T ss_dssp CSSCEEEEEECSSSSEEEEEECC
T ss_pred CCCCceeEEecCCCceEEEeecC
Confidence 33456778888777777766543
No 264
>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}
Probab=70.75 E-value=1.2 Score=41.72 Aligned_cols=32 Identities=34% Similarity=0.853 Sum_probs=28.6
Q ss_pred CCccccccccccCCCCCCccccCCCCccccCCCCCCC
Q psy4900 267 GGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCN 303 (485)
Q Consensus 267 g~C~~~C~n~~~~~~~g~~~C~C~~Gy~l~~d~~~C~ 303 (485)
..|.+.|.|.. ++++|.|..||.|..|++.|.
T Consensus 132 ~~c~~~C~n~~-----g~~~C~C~~Gy~l~~d~~~C~ 163 (278)
T 3dem_A 132 LSCDHYCHNYI-----GGYYCSCRFGYILHTDNRTCR 163 (278)
T ss_dssp CCCSSEEEEET-----TEEEEECCTTCEECTTSSCEE
T ss_pred ccCCcCcCCcc-----CCcEEEeCCcceeccCCCCCc
Confidence 37889999999 999999999999999887775
No 265
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Probab=70.69 E-value=2.2 Score=28.96 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=19.0
Q ss_pred cccc--CCCCCCeeeCCCCceeeCCCCCCC
Q psy4900 186 FTCQ--ASPTGGVCQCPEGQKVANDSRTCL 213 (485)
Q Consensus 186 ~~C~--n~~~~~~C~C~~G~~l~~~~~~C~ 213 (485)
..|. +..++|.|.|++||. +..|.
T Consensus 18 g~C~~~~~~~~~~C~C~~G~~----G~~Ce 43 (53)
T 1egf_A 18 GVCMHIESLDSYTCNCVIGYS----GDRCQ 43 (53)
T ss_dssp CEEEEESSSSCEEEECCTTCC----SSSSC
T ss_pred cEEEeeCCCCCEEEECCCCCc----CCcCC
Confidence 4687 788999999999994 44564
No 266
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=70.22 E-value=17 Score=32.91 Aligned_cols=73 Identities=15% Similarity=0.064 Sum_probs=50.3
Q ss_pred EecCCCCCCccEEecCCCCeEEEeCCCcEEEEEcCC-C------CcEEEEeCCCcccceEEEeCCCCeEEEEeCCCCcEE
Q psy4900 395 VLGSNLTNPTDLALDPTSGLMFVADSNQILRTNMDG-T------MAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 467 (485)
Q Consensus 395 l~~~~~~~p~~iavD~~~~~lywtd~~~I~r~~~dG-~------~~~~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~ 467 (485)
+-...+.+...||++| .|.||-....+|++.++.. . ..+.|-..+...=..|.+| .++.||-+ ..++|.
T Consensus 35 iG~~gw~~~~~laf~P-~G~LYaV~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD-~~G~LYav--~dG~iy 110 (236)
T 1tl2_A 35 IGKGGWSNFKFLFLSP-GGELYGVLNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFD-PNGYLYAV--SKDKLY 110 (236)
T ss_dssp EESSSCTTCSEEEECT-TSCEEEEETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEEC-TTSCEEEE--ETTEEE
T ss_pred cCccccccceeEEECC-CccEEEEeCCeEEEECCCCCCcccccccccEecccccccceEEEEC-CCCCEEEe--CCCEEE
Confidence 3333577888999999 8999988778899988742 1 1233433333334578888 78888888 337888
Q ss_pred EEEc
Q psy4900 468 TVDY 471 (485)
Q Consensus 468 ~~~~ 471 (485)
+.+-
T Consensus 111 r~~p 114 (236)
T 1tl2_A 111 KASP 114 (236)
T ss_dssp EESC
T ss_pred EeCC
Confidence 7765
No 267
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=69.89 E-value=51 Score=30.70 Aligned_cols=82 Identities=12% Similarity=0.058 Sum_probs=49.8
Q ss_pred CCCCCCccEEecCCCCeEEEeC-CCcEEEEEcCCCCcEEEEeCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEccCCCe
Q psy4900 398 SNLTNPTDLALDPTSGLMFVAD-SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEGKNR 476 (485)
Q Consensus 398 ~~~~~p~~iavD~~~~~lywtd-~~~I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG~~r 476 (485)
..-....+|++.|...+|.-.. ...|...++........+.........|++.+..+.|+-. ...+.|..-++.....
T Consensus 162 ~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~-s~dg~i~iwd~~~~~~ 240 (321)
T 3ow8_A 162 TRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTA-SDDGYIKIYDVQHANL 240 (321)
T ss_dssp CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEE-CTTSCEEEEETTTCCE
T ss_pred CCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEE-cCCCeEEEEECCCcce
Confidence 3344567889998877766655 6777777776443333333334456788888765555443 4556677777765544
Q ss_pred EEEe
Q psy4900 477 FLIL 480 (485)
Q Consensus 477 ~~~~ 480 (485)
...+
T Consensus 241 ~~~~ 244 (321)
T 3ow8_A 241 AGTL 244 (321)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 3333
No 268
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=68.88 E-value=37 Score=32.52 Aligned_cols=95 Identities=8% Similarity=0.070 Sum_probs=62.9
Q ss_pred CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC-CCcEEEEEcCCCCcEEEEeCCCcccceEEEeCCCCe
Q psy4900 377 EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD-SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKR 455 (485)
Q Consensus 377 ~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd-~~~I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~~ 455 (485)
.|.+.++. ......++........+|++.|...+|+-.. ...|..-++........+.........|++.+..+.
T Consensus 120 ~i~iwd~~----~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 195 (420)
T 3vl1_A 120 DIKVLDSN----FNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195 (420)
T ss_dssp CEEEECTT----SCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTE
T ss_pred CEEEEeCC----CcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCE
Confidence 55555665 4444455555666778899999866666555 678888888754444444445566788999887777
Q ss_pred EEEEeCCCCcEEEEEccCCCe
Q psy4900 456 LFWCDNLLDYIETVDYEGKNR 476 (485)
Q Consensus 456 lYW~D~~~~~I~~~~~dG~~r 476 (485)
|+-. ...+.|..-++.....
T Consensus 196 l~s~-~~d~~v~iwd~~~~~~ 215 (420)
T 3vl1_A 196 VLSA-SLDGTIRLWECGTGTT 215 (420)
T ss_dssp EEEE-ETTSCEEEEETTTTEE
T ss_pred EEEE-cCCCcEEEeECCCCce
Confidence 7754 3456788877764443
No 269
>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1
Probab=68.80 E-value=1.4 Score=41.61 Aligned_cols=32 Identities=38% Similarity=0.885 Sum_probs=27.8
Q ss_pred CCccccccccccCCCCCCccccCCCCccccCCCCCCC
Q psy4900 267 GGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCN 303 (485)
Q Consensus 267 g~C~~~C~n~~~~~~~g~~~C~C~~Gy~l~~d~~~C~ 303 (485)
..|+|.|.|+. |+|.|.|.+||.|..++++|.
T Consensus 131 ~~c~~~C~n~~-----g~~~csC~~Gy~L~~d~~~C~ 162 (286)
T 1nt0_A 131 VPCDHYCHXYL-----GGYYCSCRVGYILHQNKHTCS 162 (286)
T ss_dssp -CCSSEEEEET-----TEEEEECCTTEEECTTSSCEE
T ss_pred ccCCCcccccc-----CceEeecCCCceeccCCCCcc
Confidence 35889999998 999999999999998877764
No 270
>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}
Probab=68.29 E-value=2.8 Score=28.82 Aligned_cols=17 Identities=29% Similarity=0.923 Sum_probs=14.4
Q ss_pred CCccccCCCCccccCCCCCCC
Q psy4900 283 LGYKCACDIGYRLSVNGNNCN 303 (485)
Q Consensus 283 g~~~C~C~~Gy~l~~d~~~C~ 303 (485)
++|+|.|++||. +..|+
T Consensus 32 ~~y~C~C~~g~~----G~~CE 48 (55)
T 3u7u_G 32 SRYLCKCPNEFT----GDRCQ 48 (55)
T ss_dssp CCEEEEECTTEE----STTSC
T ss_pred CCEeEeCCCCCc----CCCcC
Confidence 789999999995 67775
No 271
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=67.58 E-value=18 Score=38.13 Aligned_cols=107 Identities=7% Similarity=0.035 Sum_probs=64.9
Q ss_pred cccc--CCCCccCCCCC---CccccccCcccccceEEEEecCCCCCCcc-EEecCCCCeEEEeC--C----CcEEEEEcC
Q psy4900 362 TWKC--DSENDCGDGSD---EGDFCSEKTCAYFQFHAIVLGSNLTNPTD-LALDPTSGLMFVAD--S----NQILRTNMD 429 (485)
Q Consensus 362 ~~~~--~~~~~y~~d~~---~I~~~~~~~c~~g~~~~~l~~~~~~~p~~-iavD~~~~~lywtd--~----~~I~r~~~d 429 (485)
.|.+ ++..++....+ .|...+.+ +.....|. .......+ ++++|..++||++. . .+|++.+++
T Consensus 316 ~~sp~~dg~~l~~~~~~g~~~l~~~~~~----~~~~~~l~-~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~ 390 (706)
T 2z3z_A 316 TFLPGSNNQFIWQSRRDGWNHLYLYDTT----GRLIRQVT-KGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIK 390 (706)
T ss_dssp EECTTCSSEEEEEECTTSSCEEEEEETT----SCEEEECC-CSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETT
T ss_pred eeecCCCCEEEEEEccCCccEEEEEECC----CCEEEecC-CCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcC
Confidence 4556 55544443333 44444555 55544443 32222334 78999988999876 2 379999988
Q ss_pred CCCcEEEEeCCCcccceEEEeCCCCeEEEEeCCC---CcEEEEEccCCC
Q psy4900 430 GTMAMSIVSEAAYKASGVALDINAKRLFWCDNLL---DYIETVDYEGKN 475 (485)
Q Consensus 430 G~~~~~i~~~~~~~p~glavD~~~~~lYW~D~~~---~~I~~~~~dG~~ 475 (485)
+...+.|.. ......+++.+..++|..+-... ..|...++++..
T Consensus 391 ~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 391 GGKTKDLTP--ESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp CCCCEESCC--SSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred CCCceeccC--CCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 766554432 23456788887777777653322 568888888765
No 272
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Probab=67.56 E-value=4.1 Score=27.56 Aligned_cols=24 Identities=38% Similarity=1.052 Sum_probs=18.5
Q ss_pred ccc--ccccCCCCCCccccCCCCccccCCCCCCCC
Q psy4900 272 MCI--ITRASGNALGYKCACDIGYRLSVNGNNCNQ 304 (485)
Q Consensus 272 ~C~--n~~~~~~~g~~~C~C~~Gy~l~~d~~~C~~ 304 (485)
.|+ +.. ++|.|.|+.||. +..|..
T Consensus 19 ~C~~~~~~-----~~~~C~C~~G~~----G~~Ce~ 44 (53)
T 1egf_A 19 VCMHIESL-----DSYTCNCVIGYS----GDRCQT 44 (53)
T ss_dssp EEEEESSS-----SCEEEECCTTCC----SSSSCC
T ss_pred EEEeeCCC-----CCEEEECCCCCc----CCcCCc
Confidence 577 666 899999999994 666643
No 273
>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D
Probab=66.78 E-value=0.78 Score=31.16 Aligned_cols=17 Identities=41% Similarity=1.155 Sum_probs=13.6
Q ss_pred CCccccCCCCccccCCCCCCC
Q psy4900 283 LGYKCACDIGYRLSVNGNNCN 303 (485)
Q Consensus 283 g~~~C~C~~Gy~l~~d~~~C~ 303 (485)
++|.|.|+.||. +..|+
T Consensus 31 ~~y~C~C~~Gf~----G~~Ce 47 (52)
T 3ca7_A 31 PVYSCECAIGFM----GQRCE 47 (52)
T ss_dssp EEEEEECCTTEE----STTSC
T ss_pred CCEEEECCCCCc----CCCCc
Confidence 679999999995 55664
No 274
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=66.38 E-value=11 Score=40.38 Aligned_cols=112 Identities=8% Similarity=-0.006 Sum_probs=63.7
Q ss_pred cccccCCCCcc-CC-CCC---CccccccCcccccceEEEEecCCCCCCcc-EEecCCCCeEEEeCC--------CcEEEE
Q psy4900 361 STWKCDSENDC-GD-GSD---EGDFCSEKTCAYFQFHAIVLGSNLTNPTD-LALDPTSGLMFVADS--------NQILRT 426 (485)
Q Consensus 361 ~~~~~~~~~~y-~~-d~~---~I~~~~~~~c~~g~~~~~l~~~~~~~p~~-iavD~~~~~lywtd~--------~~I~r~ 426 (485)
..|.+++..++ |. +.+ .|.+.+++ |.....|.... -.... +.+| .+.||++.. ..|+++
T Consensus 324 p~fspDG~~l~~~~s~~~G~~~l~~~~~~----~~~~~~lT~g~-~~v~~~~~~d--~~~i~f~~~~~~~~~~~~~ly~v 396 (740)
T 4a5s_A 324 PHFTLDGNSFYKIISNEEGYRHICYFQID----KKDCTFITKGT-WEVIGIEALT--SDYLYYISNEYKGMPGGRNLYKI 396 (740)
T ss_dssp CEECTTSSEEEEEEECTTSCEEEEEEETT----CSSCEESCCSS-SCEEEEEEEC--SSEEEEEESCGGGCTTCBEEEEE
T ss_pred ceEcCCCCEEEEEEEcCCCceEEEEEECC----CCceEecccCC-EEEEEEEEEe--CCEEEEEEecCCCCCceeEEEEE
Confidence 35678877665 43 222 67777777 66555444332 22233 3466 788999873 379999
Q ss_pred EcCCCCcEEEEeCCC----cccceEEEeCCCCeEEEEeCC--CCcEEEEEccCCCeEEE
Q psy4900 427 NMDGTMAMSIVSEAA----YKASGVALDINAKRLFWCDNL--LDYIETVDYEGKNRFLI 479 (485)
Q Consensus 427 ~~dG~~~~~i~~~~~----~~p~glavD~~~~~lYW~D~~--~~~I~~~~~dG~~r~~~ 479 (485)
+++|...++.++..+ .....+++.+..+.+..+-+. ...+...++++.....+
T Consensus 397 ~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~ 455 (740)
T 4a5s_A 397 QLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRV 455 (740)
T ss_dssp ETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEE
T ss_pred ECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEEE
Confidence 999877654554332 234456666555544333222 34566666664443333
No 275
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=66.16 E-value=10 Score=40.57 Aligned_cols=77 Identities=12% Similarity=0.100 Sum_probs=53.3
Q ss_pred CccEEecCCCCeEE-EeC----CCcEEEEEcCCCCcEEEEeCCCcccceEEEeCCCCeEEEEeCC------CCcEEEEEc
Q psy4900 403 PTDLALDPTSGLMF-VAD----SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNL------LDYIETVDY 471 (485)
Q Consensus 403 p~~iavD~~~~~ly-wtd----~~~I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~~lYW~D~~------~~~I~~~~~ 471 (485)
+..+++-|....|+ |.. ...|+..+++|...+.|.........-+++| .++||++-.. ...|+++++
T Consensus 321 ~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~~d--~~~i~f~~~~~~~~~~~~~ly~v~~ 398 (740)
T 4a5s_A 321 PSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALT--SDYLYYISNEYKGMPGGRNLYKIQL 398 (740)
T ss_dssp CCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEEEC--SSEEEEEESCGGGCTTCBEEEEEET
T ss_pred CCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEEEe--CCEEEEEEecCCCCCceeEEEEEEC
Confidence 45677877766665 663 3689999999988776665432222234567 8899998765 258999999
Q ss_pred cCCCeEEEec
Q psy4900 472 EGKNRFLILR 481 (485)
Q Consensus 472 dG~~r~~~~~ 481 (485)
+|...++.+.
T Consensus 399 ~g~~~~~~lt 408 (740)
T 4a5s_A 399 IDYTKVTCLS 408 (740)
T ss_dssp TEEEEEEESS
T ss_pred CCCCcceeec
Confidence 9887654443
No 276
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=64.75 E-value=65 Score=30.75 Aligned_cols=111 Identities=10% Similarity=0.041 Sum_probs=68.1
Q ss_pred ccccCCCCccCCCCC-CccccccCcccccceEEEEecCC-CCCCccEEecCCCCeEEEe---C-CCcEEEEEcCCCCc--
Q psy4900 362 TWKCDSENDCGDGSD-EGDFCSEKTCAYFQFHAIVLGSN-LTNPTDLALDPTSGLMFVA---D-SNQILRTNMDGTMA-- 433 (485)
Q Consensus 362 ~~~~~~~~~y~~d~~-~I~~~~~~~c~~g~~~~~l~~~~-~~~p~~iavD~~~~~lywt---d-~~~I~r~~~dG~~~-- 433 (485)
.|.+++..++....+ .|.+.++.+ +.....+.... -..+..+++.|...+|+-. . ...|...++.....
T Consensus 183 ~~~~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~ 259 (402)
T 2aq5_A 183 DWSRDGALICTSCRDKRVRVIEPRK---GTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPL 259 (402)
T ss_dssp EECTTSSCEEEEETTSEEEEEETTT---TEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCS
T ss_pred EECCCCCEEEEEecCCcEEEEeCCC---CceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCc
Confidence 345555444444333 566666551 33333331222 2236788998875555544 2 67788888775442
Q ss_pred EEEEeCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEccCCC
Q psy4900 434 MSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEGKN 475 (485)
Q Consensus 434 ~~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG~~ 475 (485)
..........+..+++++..+.||.+-...+.|...++....
T Consensus 260 ~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 260 SLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA 301 (402)
T ss_dssp EEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred eEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence 222223345678899999999999988778889999888655
No 277
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=64.48 E-value=6.1 Score=42.12 Aligned_cols=110 Identities=9% Similarity=-0.010 Sum_probs=65.4
Q ss_pred ccCCCCccCC-CCC----CccccccCcccccceE---EEEecCCCCCCccEEecCCCCeEEEeC----CCcEEEEEcCCC
Q psy4900 364 KCDSENDCGD-GSD----EGDFCSEKTCAYFQFH---AIVLGSNLTNPTDLALDPTSGLMFVAD----SNQILRTNMDGT 431 (485)
Q Consensus 364 ~~~~~~~y~~-d~~----~I~~~~~~~c~~g~~~---~~l~~~~~~~p~~iavD~~~~~lywtd----~~~I~r~~~dG~ 431 (485)
.++++.+|+. +.+ +|.+++++ +... ..|+...-.. +++.+..++|+++. ..+|+..+++|.
T Consensus 288 ~~~g~~l~~~t~~~~~~~~l~~~d~~----~~~~~~~~~l~~~~~~~---~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 288 DNKGSTLYLLTNRDAPNRRLVTVDAA----NPGPAHWRDLIPERQQV---LTVHSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp EEETTEEEEEECTTCTTCEEEEEETT----SCCGGGCEEEECCCSSC---EEEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred eccCCEEEEEECCCCCCCEEEEEeCC----CCCccccEEEecCCCCE---EEEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence 3455666653 222 56667766 4332 4555433222 25666677888876 247999999987
Q ss_pred CcEEEEeCCCcccceEEEeCCCCeEEEEeCC---CCcEEEEEccCCCeEEEe
Q psy4900 432 MAMSIVSEAAYKASGVALDINAKRLFWCDNL---LDYIETVDYEGKNRFLIL 480 (485)
Q Consensus 432 ~~~~i~~~~~~~p~glavD~~~~~lYW~D~~---~~~I~~~~~dG~~r~~~~ 480 (485)
..+.|.........+++.++..+.||.+-.. -..|...++.+..+++|.
T Consensus 361 ~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~ 412 (693)
T 3iuj_A 361 RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYR 412 (693)
T ss_dssp EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEE
T ss_pred eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEE
Confidence 6555543333344456666667777765433 278888888776665544
No 278
>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}
Probab=64.36 E-value=3.3 Score=28.49 Aligned_cols=27 Identities=22% Similarity=0.561 Sum_probs=17.8
Q ss_pred CCCCCCcc--ccc-----cCCCCCCeeeCCCCce
Q psy4900 178 DCSLLNCE--FTC-----QASPTGGVCQCPEGQK 204 (485)
Q Consensus 178 ~C~~~~C~--~~C-----~n~~~~~~C~C~~G~~ 204 (485)
+|...+|. ..| .+..++|+|.|++||.
T Consensus 10 eC~s~pC~NgGtC~~~~~~d~~~~y~C~C~~g~~ 43 (55)
T 3u7u_G 10 EKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEFT 43 (55)
T ss_dssp STTTTTSCTTCEEEEECCC--CCCEEEEECTTEE
T ss_pred CCcCCCCCCCCCcCCCCccCCCCCEeEeCCCCCc
Confidence 35555553 467 4567899999999995
No 279
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=63.27 E-value=18 Score=40.47 Aligned_cols=96 Identities=13% Similarity=0.063 Sum_probs=64.7
Q ss_pred cccccCCCCccCCCCC-CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC-C----------CcEEEEEc
Q psy4900 361 STWKCDSENDCGDGSD-EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD-S----------NQILRTNM 428 (485)
Q Consensus 361 ~~~~~~~~~~y~~d~~-~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd-~----------~~I~r~~~ 428 (485)
..|.|++..+.+...+ .|.+.++. +.....++........++++.|...+|.|+. . ..|+..++
T Consensus 384 ~~~SpDG~~la~~~~~~~v~~~d~~----tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~ 459 (1045)
T 1k32_A 384 MGVDRNGKFAVVANDRFEIMTVDLE----TGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDM 459 (1045)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETT----TCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEET
T ss_pred eEECCCCCEEEEECCCCeEEEEECC----CCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEEC
Confidence 4466777666654444 66667766 4444444434444557899999988898876 2 37999998
Q ss_pred CCCCcEEEEeCCCcccceEEEeCCCCeEEEEeC
Q psy4900 429 DGTMAMSIVSEAAYKASGVALDINAKRLFWCDN 461 (485)
Q Consensus 429 dG~~~~~i~~~~~~~p~glavD~~~~~lYW~D~ 461 (485)
++.. ...+......+..+++.+..++|||+..
T Consensus 460 ~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~ 491 (1045)
T 1k32_A 460 EGRK-IFAATTENSHDYAPAFDADSKNLYYLSY 491 (1045)
T ss_dssp TTTE-EEECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred CCCc-EEEeeCCCcccCCceEcCCCCEEEEEec
Confidence 8755 3333344555777888888999999875
No 280
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=63.07 E-value=2.9 Score=43.25 Aligned_cols=103 Identities=7% Similarity=-0.149 Sum_probs=63.9
Q ss_pred ccccCCCCccCCCCC-----CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC-CC--cEEEEEcCCCCc
Q psy4900 362 TWKCDSENDCGDGSD-----EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD-SN--QILRTNMDGTMA 433 (485)
Q Consensus 362 ~~~~~~~~~y~~d~~-----~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd-~~--~I~r~~~dG~~~ 433 (485)
.+.|+|..+++...+ .|.+.++. +.....|. .......++++.|...+||.++ .. +|++.++++...
T Consensus 156 ~~spDG~~la~~~~~~~~~~~i~~~d~~----~g~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~ 230 (582)
T 3o4h_A 156 VSDIRGDLIAGLGFFGGGRVSLFTSNLS----SGGLRVFD-SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSV 230 (582)
T ss_dssp EEEEETTEEEEEEEEETTEEEEEEEETT----TCCCEEEC-CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCE
T ss_pred EECCCCCEEEEEEEcCCCCeEEEEEcCC----CCCceEee-cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcE
Confidence 455777777653322 56667766 44444443 4444567889999888888655 34 899999998776
Q ss_pred EEEEeCCCcccceEE--------EeCCCCeEEEEeCCCCcEEEEEc
Q psy4900 434 MSIVSEAAYKASGVA--------LDINAKRLFWCDNLLDYIETVDY 471 (485)
Q Consensus 434 ~~i~~~~~~~p~gla--------vD~~~~~lYW~D~~~~~I~~~~~ 471 (485)
+ ++......+.+++ +.+.. +||.+-...+++....+
T Consensus 231 ~-~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 231 E-DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID 274 (582)
T ss_dssp E-ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET
T ss_pred E-EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE
Confidence 6 5543333444555 77666 66665555555555555
No 281
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=61.83 E-value=25 Score=36.93 Aligned_cols=116 Identities=9% Similarity=0.067 Sum_probs=61.8
Q ss_pred cccccCCCCccCCCCCCccccccCcccccceEEEEecCCC------------------CCCccEEecCCCCeEEEeC--C
Q psy4900 361 STWKCDSENDCGDGSDEGDFCSEKTCAYFQFHAIVLGSNL------------------TNPTDLALDPTSGLMFVAD--S 420 (485)
Q Consensus 361 ~~~~~~~~~~y~~d~~~I~~~~~~~c~~g~~~~~l~~~~~------------------~~p~~iavD~~~~~lywtd--~ 420 (485)
..|.|++..+.+.....|.+.++. +.....+..... ..+.++++.|...+|+++. .
T Consensus 119 ~~~SPdG~~la~~~~~~i~~~~~~----~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~ 194 (723)
T 1xfd_A 119 AGWGPKGQQLIFIFENNIYYCAHV----GKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIND 194 (723)
T ss_dssp CCBCSSTTCEEEEETTEEEEESSS----SSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEEC
T ss_pred cEECCCCCEEEEEECCeEEEEECC----CCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECC
Confidence 456777766666544566666665 443333332211 1336788888877776654 1
Q ss_pred C---------------------------------cEEEEEcCCCCc-EEEEeCC-----CcccceEEEeCCCCeE-EEEe
Q psy4900 421 N---------------------------------QILRTNMDGTMA-MSIVSEA-----AYKASGVALDINAKRL-FWCD 460 (485)
Q Consensus 421 ~---------------------------------~I~r~~~dG~~~-~~i~~~~-----~~~p~glavD~~~~~l-YW~D 460 (485)
. .|...++.+... +.|.... ......+++.+..+.| +|++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~ 274 (723)
T 1xfd_A 195 SRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLN 274 (723)
T ss_dssp TTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEE
T ss_pred CccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEc
Confidence 1 455555554442 2222110 1223456776666666 5555
Q ss_pred CCC--CcEEEEEccCCCeEEEe
Q psy4900 461 NLL--DYIETVDYEGKNRFLIL 480 (485)
Q Consensus 461 ~~~--~~I~~~~~dG~~r~~~~ 480 (485)
... ..|...++.+...+.++
T Consensus 275 ~~~~~~~i~~~d~~~g~~~~~~ 296 (723)
T 1xfd_A 275 RAQNVSILTLCDATTGVCTKKH 296 (723)
T ss_dssp TTSCEEEEEEEETTTCCEEEEE
T ss_pred CCCCeEEEEEEeCCCCcceEEE
Confidence 432 46777777765544443
No 282
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=61.55 E-value=23 Score=34.72 Aligned_cols=76 Identities=7% Similarity=0.093 Sum_probs=54.3
Q ss_pred CCCCCCccEEecCCCCeEEEeC--CCcEEEEEcCCC-CcEEEEeCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEccC
Q psy4900 398 SNLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGT-MAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEG 473 (485)
Q Consensus 398 ~~~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~-~~~~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG 473 (485)
..-..++.|++.|...++|.+- .+.|...++... .....+.........|++.+..+.|+.+-...+.|...++..
T Consensus 275 ~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 275 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 3445678899999877777665 678888888753 323333344556788998888878888877778888887765
No 283
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=61.50 E-value=20 Score=37.36 Aligned_cols=72 Identities=14% Similarity=0.092 Sum_probs=56.5
Q ss_pred CCCccEEecCCCCeEEEeC--CCcEEEEEcCCCC---------c-EEEEeCCC-cccceEEEeCCCCeEEEEeCCCCcEE
Q psy4900 401 TNPTDLALDPTSGLMFVAD--SNQILRTNMDGTM---------A-MSIVSEAA-YKASGVALDINAKRLFWCDNLLDYIE 467 (485)
Q Consensus 401 ~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~---------~-~~i~~~~~-~~p~glavD~~~~~lYW~D~~~~~I~ 467 (485)
.+|.||++.|...+||-++ .++|...+++-.. + .++..-.+ ..|.++|+|... ++|-+-...+.|.
T Consensus 277 ~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~ 355 (595)
T 1fwx_A 277 NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVV 355 (595)
T ss_dssp SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEE
T ss_pred CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEE
Confidence 5799999999999999999 7889988888321 1 12222222 359999999877 9999998889999
Q ss_pred EEEccC
Q psy4900 468 TVDYEG 473 (485)
Q Consensus 468 ~~~~dG 473 (485)
+.+++.
T Consensus 356 kwdi~~ 361 (595)
T 1fwx_A 356 KWNIED 361 (595)
T ss_dssp EEEHHH
T ss_pred EEEhhH
Confidence 998876
No 284
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=61.14 E-value=96 Score=28.11 Aligned_cols=106 Identities=10% Similarity=0.065 Sum_probs=57.7
Q ss_pred cccCCCCccCCCCC-CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC-CCcEEEEEcCCCCcEEEEeCC
Q psy4900 363 WKCDSENDCGDGSD-EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD-SNQILRTNMDGTMAMSIVSEA 440 (485)
Q Consensus 363 ~~~~~~~~y~~d~~-~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd-~~~I~r~~~dG~~~~~i~~~~ 440 (485)
|.+++..+.....+ .|.+.++. .......+.........+++.|...+|+-.. ...|..-++........+...
T Consensus 73 ~~~~~~~l~s~~~d~~i~vwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 148 (312)
T 4ery_A 73 WSSDSNLLVSASDDKTLKIWDVS----SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 148 (312)
T ss_dssp ECTTSSEEEEEETTSEEEEEETT----TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred EcCCCCEEEEECCCCEEEEEECC----CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCC
Confidence 44444333333223 45555544 2222222334445567788988877777665 677888887754433334333
Q ss_pred CcccceEEEeCCCCeEEEEeCCCCcEEEEEccC
Q psy4900 441 AYKASGVALDINAKRLFWCDNLLDYIETVDYEG 473 (485)
Q Consensus 441 ~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG 473 (485)
......|++.+....|+... ..+.|...++..
T Consensus 149 ~~~v~~~~~~~~~~~l~~~~-~d~~i~~wd~~~ 180 (312)
T 4ery_A 149 SDPVSAVHFNRDGSLIVSSS-YDGLCRIWDTAS 180 (312)
T ss_dssp SSCEEEEEECTTSSEEEEEE-TTSCEEEEETTT
T ss_pred CCcEEEEEEcCCCCEEEEEe-CCCcEEEEECCC
Confidence 34456778776555555443 445666666653
No 285
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=60.31 E-value=7.3 Score=41.77 Aligned_cols=108 Identities=11% Similarity=0.006 Sum_probs=63.2
Q ss_pred cCCCCccCCCC-C----CccccccCccccc--ceEEEEecCCCCCCccEEecCCCCeEEEeC----CCcEEEEEcCCCCc
Q psy4900 365 CDSENDCGDGS-D----EGDFCSEKTCAYF--QFHAIVLGSNLTNPTDLALDPTSGLMFVAD----SNQILRTNMDGTMA 433 (485)
Q Consensus 365 ~~~~~~y~~d~-~----~I~~~~~~~c~~g--~~~~~l~~~~~~~p~~iavD~~~~~lywtd----~~~I~r~~~dG~~~ 433 (485)
++++.+|+... + .|.+.+++ + .....++...-....+++++ .+.|+++. ..+|+..+++|...
T Consensus 325 ~dg~~l~~~s~~~~~~~~l~~~d~~----~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~ 398 (741)
T 1yr2_A 325 GVGDQLWFVSGDGAPLKKIVRVDLS----GSTPRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKPA 398 (741)
T ss_dssp EETTEEEEEECTTCTTCEEEEEECS----SSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCEE
T ss_pred ccCCEEEEEECCCCCCCEEEEEeCC----CCccccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCce
Confidence 56666666422 1 57777776 5 24455554332223344554 67888876 35788888887754
Q ss_pred EEEEeCCCcccceEEEeCCCCeEEEEeCC---CCcEEEEEccCCCeEE
Q psy4900 434 MSIVSEAAYKASGVALDINAKRLFWCDNL---LDYIETVDYEGKNRFL 478 (485)
Q Consensus 434 ~~i~~~~~~~p~glavD~~~~~lYW~D~~---~~~I~~~~~dG~~r~~ 478 (485)
+.|.........++++++..+.|+.+-+. -++|+..++.+..+++
T Consensus 399 ~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~ 446 (741)
T 1yr2_A 399 GAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTP 446 (741)
T ss_dssp EECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEE
T ss_pred eeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEE
Confidence 44432234445677777666667654322 2678888887665443
No 286
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=60.19 E-value=1e+02 Score=27.99 Aligned_cols=84 Identities=8% Similarity=0.080 Sum_probs=49.8
Q ss_pred cceEEEEecCCCCCCccEEecCCCCeEEEeC-CCcEEEEEcCCCCcEEEEeCCCcccceEEEeCCCCeEEEEeCCCCcEE
Q psy4900 389 FQFHAIVLGSNLTNPTDLALDPTSGLMFVAD-SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 467 (485)
Q Consensus 389 g~~~~~l~~~~~~~p~~iavD~~~~~lywtd-~~~I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~ 467 (485)
+..... +........+|++.|...+|+-.. ...|..-++........+.........+++.+....|+-.. ..+.|.
T Consensus 55 ~~~~~~-~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~~i~ 132 (312)
T 4ery_A 55 GKFEKT-ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS-FDESVR 132 (312)
T ss_dssp CCEEEE-ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEE-TTSCEE
T ss_pred cccchh-hccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCCcEE
Confidence 444333 334455567889998876666655 66777777775444444444444566777776666555443 345566
Q ss_pred EEEccCC
Q psy4900 468 TVDYEGK 474 (485)
Q Consensus 468 ~~~~dG~ 474 (485)
.-++...
T Consensus 133 iwd~~~~ 139 (312)
T 4ery_A 133 IWDVKTG 139 (312)
T ss_dssp EEETTTC
T ss_pred EEECCCC
Confidence 6665533
No 287
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=59.63 E-value=32 Score=35.85 Aligned_cols=60 Identities=22% Similarity=0.282 Sum_probs=42.2
Q ss_pred CCCCCccEEecCCCCeEEEeC-----------------------CCcEEEEEcCCCC-------cEEEEeC---------
Q psy4900 399 NLTNPTDLALDPTSGLMFVAD-----------------------SNQILRTNMDGTM-------AMSIVSE--------- 439 (485)
Q Consensus 399 ~~~~p~~iavD~~~~~lywtd-----------------------~~~I~r~~~dG~~-------~~~i~~~--------- 439 (485)
.+.+|.+|+++|..|.||++- ...|+|...++.. ...++..
T Consensus 382 ~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~~ 461 (592)
T 3zwu_A 382 RMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGT 461 (592)
T ss_dssp CEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTS
T ss_pred EEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCccccccc
Confidence 467899999999999999984 1459998877543 1233321
Q ss_pred ------------CCcccceEEEeCCCCeEEEE
Q psy4900 440 ------------AAYKASGVALDINAKRLFWC 459 (485)
Q Consensus 440 ------------~~~~p~glavD~~~~~lYW~ 459 (485)
.+..|.+|+||.. ++||..
T Consensus 462 ~~~~~~~~~~~~~f~~PDNL~fd~~-G~LwI~ 492 (592)
T 3zwu_A 462 PKGGSSNITPQNMFNSPDGLGFDKA-GRLWIL 492 (592)
T ss_dssp GGGCCTTCCTTTCCCCEEEEEECTT-CCEEEE
T ss_pred ccccccccCCCCCccCCcceEECCC-CCEEEE
Confidence 2668999999975 456554
No 288
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=59.32 E-value=21 Score=33.39 Aligned_cols=84 Identities=7% Similarity=-0.055 Sum_probs=49.3
Q ss_pred cccccCCCCccCCCC----C--CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC---------------
Q psy4900 361 STWKCDSENDCGDGS----D--EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD--------------- 419 (485)
Q Consensus 361 ~~~~~~~~~~y~~d~----~--~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd--------------- 419 (485)
..|.|++..+++... . .|.+.+++ +.....+..... +.++++.|...+|+++.
T Consensus 64 ~~~SpDg~~la~~~~~~~~~~~~l~~~~~~----~g~~~~l~~~~~--~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~ 137 (347)
T 2gop_A 64 PRISPDGKKIAFMRANEEKKVSEIWVADLE----TLSSKKILEAKN--IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDV 137 (347)
T ss_dssp EEECTTSSEEEEEEEETTTTEEEEEEEETT----TTEEEEEEEESE--EEEEEECTTSSEEEEEEECCCC---------C
T ss_pred eEECCCCCEEEEEEeccCCCcceEEEEECC----CCceEEEEcCCC--ccceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence 356777776666432 2 46666766 544444432222 66788888777777763
Q ss_pred -------------CCcEEEEEcCCCCc-EEEEeCCCcccceEEEeCCC
Q psy4900 420 -------------SNQILRTNMDGTMA-MSIVSEAAYKASGVALDINA 453 (485)
Q Consensus 420 -------------~~~I~r~~~dG~~~-~~i~~~~~~~p~glavD~~~ 453 (485)
..+|++.++++... +.|.. . ....+++.+..
T Consensus 138 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~--~~~~~~~spdg 182 (347)
T 2gop_A 138 PAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P--RFSSGIWHRDK 182 (347)
T ss_dssp CCC---------CEEEEEEEETTTTEEEEEEEE-E--TTCEEEEETTE
T ss_pred ceeecCcccccCccceEEEEECCCCeEEeeecC-C--CcccccCCCCe
Confidence 14688888877655 44443 2 44555555444
No 289
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A
Probab=58.04 E-value=3.9 Score=34.65 Aligned_cols=29 Identities=28% Similarity=0.618 Sum_probs=21.6
Q ss_pred ccccccccCCCCCCccccCCCCccccCCCCCCCC-CCCC
Q psy4900 271 HMCIITRASGNALGYKCACDIGYRLSVNGNNCNQ-PTCA 308 (485)
Q Consensus 271 ~~C~n~~~~~~~g~~~C~C~~Gy~l~~d~~~C~~-~~C~ 308 (485)
..|+++. ++|+|.|++||. +..|.. ++|.
T Consensus 131 g~C~~~~-----~~~~c~C~~g~~----G~~Ce~~~~c~ 160 (162)
T 1g1s_A 131 GECLETI-----GNYTCSCYPGFY----GPECEYVRDDD 160 (162)
T ss_dssp EEEEECS-----SSEEEEECTTEE----STTSCEECC--
T ss_pred CEEecCC-----CCceEeCCCCCc----CcccccCcccC
Confidence 4688887 899999999996 667765 4554
No 290
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=57.94 E-value=59 Score=30.74 Aligned_cols=107 Identities=13% Similarity=0.101 Sum_probs=58.4
Q ss_pred cccCCCCccCCCCC-CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC--CCcEEEEEcCCCCcEEEEe-
Q psy4900 363 WKCDSENDCGDGSD-EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTMAMSIVS- 438 (485)
Q Consensus 363 ~~~~~~~~y~~d~~-~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~~~~i~~- 438 (485)
+.+++..+.-...+ .|.+-++.+ +....+ +.........|++.+....++.+- .+.|..-++........+.
T Consensus 135 ~spdg~~l~sgs~d~~i~iwd~~~---~~~~~~-~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 210 (344)
T 4gqb_B 135 VLSSGTQAVSGSKDICIKVWDLAQ---QVVLSS-YRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC 210 (344)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTT---TEEEEE-ECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-
T ss_pred ECCCCCEEEEEeCCCeEEEEECCC---CcEEEE-EcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeec
Confidence 44554444433333 555556551 333333 334455667888888776666654 5667766665433222221
Q ss_pred -CCCcccceEEEeCCCCeEEEEeCCCCcEEEEEccC
Q psy4900 439 -EAAYKASGVALDINAKRLFWCDNLLDYIETVDYEG 473 (485)
Q Consensus 439 -~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG 473 (485)
.....+..|++.+..++++.+-...+.|...++..
T Consensus 211 ~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~ 246 (344)
T 4gqb_B 211 SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS 246 (344)
T ss_dssp ---CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC
T ss_pred ceeeccceeeeecCCCCcceEEeccCCcEEEEECCC
Confidence 12334667777776777766655566676666653
No 291
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=57.24 E-value=16 Score=38.75 Aligned_cols=69 Identities=14% Similarity=0.221 Sum_probs=46.3
Q ss_pred ecCCCCeEEEeC-----CCcEEEEEcCCCCc---EEEEeCCCcccceEEEeCCCCeEEEEeCCC--CcEEEEEccCCCeE
Q psy4900 408 LDPTSGLMFVAD-----SNQILRTNMDGTMA---MSIVSEAAYKASGVALDINAKRLFWCDNLL--DYIETVDYEGKNRF 477 (485)
Q Consensus 408 vD~~~~~lywtd-----~~~I~r~~~dG~~~---~~i~~~~~~~p~glavD~~~~~lYW~D~~~--~~I~~~~~dG~~r~ 477 (485)
+++..+.||+.. ..+|+++++++... ++|+...-... ++.+..++|+++-... .+|.+.+++|...+
T Consensus 287 ~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~---~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~ 363 (693)
T 3iuj_A 287 VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL---TVHSGSGYLFAEYMVDATARVEQFDYEGKRVR 363 (693)
T ss_dssp EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE---EEEEETTEEEEEEEETTEEEEEEECTTSCEEE
T ss_pred EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE---EEEEECCEEEEEEEECCeeEEEEEECCCCeeE
Confidence 555667777664 36899999997654 66665433322 5556688888775443 47888888887655
Q ss_pred EE
Q psy4900 478 LI 479 (485)
Q Consensus 478 ~~ 479 (485)
.|
T Consensus 364 ~l 365 (693)
T 3iuj_A 364 EV 365 (693)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 292
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=57.10 E-value=47 Score=32.34 Aligned_cols=76 Identities=7% Similarity=0.036 Sum_probs=54.6
Q ss_pred CCCCCCccEEecCCCCeEEEeC--CCcEEEEEcCCCC---cEEEEeCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEcc
Q psy4900 398 SNLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTM---AMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYE 472 (485)
Q Consensus 398 ~~~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~---~~~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~d 472 (485)
.....+.+|++.|..+.+|.+. ...|...++.... ....+...-..+..|++.+....||.+-...+.|...++.
T Consensus 229 ~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~ 308 (430)
T 2xyi_A 229 GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 308 (430)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred CCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCC
Confidence 3445577899999777788776 6788888887542 2223334445678899988888888877777888888887
Q ss_pred C
Q psy4900 473 G 473 (485)
Q Consensus 473 G 473 (485)
.
T Consensus 309 ~ 309 (430)
T 2xyi_A 309 N 309 (430)
T ss_dssp C
T ss_pred C
Confidence 5
No 293
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A
Probab=56.97 E-value=3.6 Score=34.83 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=23.2
Q ss_pred ccccCCCCCCeeeCCCCceeeCCCCCCCCcch
Q psy4900 186 FTCQASPTGGVCQCPEGQKVANDSRTCLLYMK 217 (485)
Q Consensus 186 ~~C~n~~~~~~C~C~~G~~l~~~~~~C~d~~e 217 (485)
..|.+..++|.|.|++||. +..|.+.++
T Consensus 131 g~C~~~~~~~~c~C~~g~~----G~~Ce~~~~ 158 (162)
T 1g1s_A 131 GECLETIGNYTCSCYPGFY----GPECEYVRD 158 (162)
T ss_dssp EEEEECSSSEEEEECTTEE----STTSCEECC
T ss_pred CEEecCCCCceEeCCCCCc----CcccccCcc
Confidence 4688889999999999996 457887765
No 294
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=56.47 E-value=1.1e+02 Score=29.15 Aligned_cols=108 Identities=12% Similarity=0.144 Sum_probs=65.6
Q ss_pred cccCCCCccCCCCC-CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC----CCcEEEEEcCCCCcEEEE
Q psy4900 363 WKCDSENDCGDGSD-EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD----SNQILRTNMDGTMAMSIV 437 (485)
Q Consensus 363 ~~~~~~~~y~~d~~-~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd----~~~I~r~~~dG~~~~~i~ 437 (485)
|.+++..+.....+ .|.+.++. .......+......+.+|++.|....|+.+- ...|...++........+
T Consensus 225 ~~~~~~~l~s~~~d~~v~iwd~~----~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~ 300 (401)
T 4aez_A 225 WRSDGLQLASGGNDNVVQIWDAR----SSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV 300 (401)
T ss_dssp ECTTSSEEEEEETTSCEEEEETT----CSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE
T ss_pred EcCCCCEEEEEeCCCeEEEccCC----CCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE
Confidence 44444333333333 55555655 3333333334556678899999777777752 577888888755444334
Q ss_pred eCCCcccceEEEeCCCCeEEEEeC-CCCcEEEEEccCCC
Q psy4900 438 SEAAYKASGVALDINAKRLFWCDN-LLDYIETVDYEGKN 475 (485)
Q Consensus 438 ~~~~~~p~glavD~~~~~lYW~D~-~~~~I~~~~~dG~~ 475 (485)
. .-..+..|++.+..+.|+.+.. ..+.|...++....
T Consensus 301 ~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~ 338 (401)
T 4aez_A 301 D-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG 338 (401)
T ss_dssp E-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTE
T ss_pred e-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcc
Confidence 3 2345778888877777777643 45777777777543
No 295
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=56.28 E-value=81 Score=29.21 Aligned_cols=108 Identities=14% Similarity=0.064 Sum_probs=63.3
Q ss_pred cccCCCCccCCCCC-CccccccCcccccce--EEEEecCCCCCCccEEecCCCCeEEEeC-CCcEEEEEcCCCCcEEEE-
Q psy4900 363 WKCDSENDCGDGSD-EGDFCSEKTCAYFQF--HAIVLGSNLTNPTDLALDPTSGLMFVAD-SNQILRTNMDGTMAMSIV- 437 (485)
Q Consensus 363 ~~~~~~~~y~~d~~-~I~~~~~~~c~~g~~--~~~l~~~~~~~p~~iavD~~~~~lywtd-~~~I~r~~~dG~~~~~i~- 437 (485)
+.+++..+.....+ .|.+.++. ... ....+...-..+.+|++.|...+|+-.. .+.|...++........+
T Consensus 16 ~s~~~~~l~~~~~d~~v~i~~~~----~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 91 (372)
T 1k8k_C 16 WNKDRTQIAICPNNHEVHIYEKS----GNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLV 91 (372)
T ss_dssp ECTTSSEEEEECSSSEEEEEEEE----TTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred ECCCCCEEEEEeCCCEEEEEeCC----CCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEE
Confidence 34444444443233 56666665 442 2222334455678899999776776655 677888777655433222
Q ss_pred -eCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEccCCC
Q psy4900 438 -SEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEGKN 475 (485)
Q Consensus 438 -~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG~~ 475 (485)
......+..|++.+..+.|+-.. ..+.|...+++...
T Consensus 92 ~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~ 129 (372)
T 1k8k_C 92 ILRINRAARCVRWAPNEKKFAVGS-GSRVISICYFEQEN 129 (372)
T ss_dssp CCCCSSCEEEEEECTTSSEEEEEE-TTSSEEEEEEETTT
T ss_pred eecCCCceeEEEECCCCCEEEEEe-CCCEEEEEEecCCC
Confidence 22344577888887766666654 45667776766554
No 296
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=55.92 E-value=31 Score=36.64 Aligned_cols=110 Identities=9% Similarity=-0.031 Sum_probs=66.9
Q ss_pred ccccCCCCccCCCCC-CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC-CCcEEEEEcCCC-CcEEEEe
Q psy4900 362 TWKCDSENDCGDGSD-EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD-SNQILRTNMDGT-MAMSIVS 438 (485)
Q Consensus 362 ~~~~~~~~~y~~d~~-~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd-~~~I~r~~~dG~-~~~~i~~ 438 (485)
.|.+++..+.....+ .|.+.++.+ +....+ +......++.|++.|...+|+-.. ...|...+++.. ....++.
T Consensus 62 ~~s~~~~~l~~~~~dg~i~vw~~~~---~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 137 (814)
T 3mkq_A 62 KFIARKNWIIVGSDDFRIRVFNYNT---GEKVVD-FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE 137 (814)
T ss_dssp EEEGGGTEEEEEETTSEEEEEETTT---CCEEEE-EECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEE
T ss_pred EEeCCCCEEEEEeCCCeEEEEECCC---CcEEEE-EecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEc
Confidence 445555444443333 566666551 333333 334556678899999877777666 678888888765 3344444
Q ss_pred CCCcccceEEEeCCCCeEEEEeCCCCcEEEEEccCCC
Q psy4900 439 EAAYKASGVALDINAKRLFWCDNLLDYIETVDYEGKN 475 (485)
Q Consensus 439 ~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG~~ 475 (485)
.....+..+++.+..+.++.+-...+.|...++.+..
T Consensus 138 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~ 174 (814)
T 3mkq_A 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST 174 (814)
T ss_dssp CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS
T ss_pred CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 4455677888876455555555566778777776443
No 297
>1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A
Probab=55.09 E-value=4.9 Score=31.16 Aligned_cols=64 Identities=23% Similarity=0.515 Sum_probs=40.6
Q ss_pred ccccC-CCCCCeeeCCCCceeeCCCCCCCCcchhhhccccccccccccceeheeheeeeeeecccCCCCCCCCCCCCCCC
Q psy4900 186 FTCQA-SPTGGVCQCPEGQKVANDSRTCLLYMKNNLKQAVRSSTVSSHVKLVLLEVYVNVLKVRKLPTTAEPQSPNPCGS 264 (485)
Q Consensus 186 ~~C~n-~~~~~~C~C~~G~~l~~~~~~C~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~C~~ 264 (485)
..|.. .++...|.|.+||.. ++..|..... .+|..
T Consensus 16 A~C~r~~~g~e~C~C~~gy~g--dg~~Cv~~~~------------------------------------------~sC~~ 51 (99)
T 1ob1_C 16 SGCFRHLDEREECKCLLNYKQ--EGDKCVENPN------------------------------------------PTCNE 51 (99)
T ss_dssp EEEECCTTSCCEEEECTTEEE--ETTEEEECSC------------------------------------------CCSTT
T ss_pred CCeEEcCCCCEEEEecCCeec--CCCeEeeCCC------------------------------------------CChhh
Confidence 34555 567889999999975 4455654332 12776
Q ss_pred CCCCcc--ccccccccCCCCCCccccCCCCc
Q psy4900 265 NNGGCE--HMCIITRASGNALGYKCACDIGY 293 (485)
Q Consensus 265 ~~g~C~--~~C~n~~~~~~~g~~~C~C~~Gy 293 (485)
.+|+|. ..|..+......+...|.|..||
T Consensus 52 nNGGCd~nA~C~~~~~~~~~~ki~C~C~~g~ 82 (99)
T 1ob1_C 52 NNGGCDADAKCTEEDSGSNGKKITCECTKPD 82 (99)
T ss_dssp GGGGCCTTEEEECCSCSSSSCCCEEEECSTT
T ss_pred cCCCcCCCceeEecCCcccCCceEeEeCCCC
Confidence 678886 46766531111256888888886
No 298
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=54.68 E-value=56 Score=31.02 Aligned_cols=115 Identities=8% Similarity=0.112 Sum_probs=64.1
Q ss_pred ccccCCCCccCCCCC-CccccccCcccccceEEEEecCCCCCCccEEecCC-CCeEEEeC-CCcEEEEEcCCCC------
Q psy4900 362 TWKCDSENDCGDGSD-EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPT-SGLMFVAD-SNQILRTNMDGTM------ 432 (485)
Q Consensus 362 ~~~~~~~~~y~~d~~-~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~-~~~lywtd-~~~I~r~~~dG~~------ 432 (485)
.|.+++..+.....+ .|.+.++.+-..+......+.........|++.|. ..+|+-.. ...|...++....
T Consensus 74 ~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 153 (416)
T 2pm9_A 74 DWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNY 153 (416)
T ss_dssp EECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTC
T ss_pred EECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccc
Confidence 344554444433222 45555554000012233334455566788999997 55555554 6778887777554
Q ss_pred cEEEE---eCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEccCCCe
Q psy4900 433 AMSIV---SEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEGKNR 476 (485)
Q Consensus 433 ~~~i~---~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG~~r 476 (485)
....+ ......+..|++.+..++++.+-...+.|...++.....
T Consensus 154 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 200 (416)
T 2pm9_A 154 TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE 200 (416)
T ss_dssp CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE
T ss_pred cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc
Confidence 22111 122345678888877566666666677788877765443
No 299
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Probab=54.63 E-value=17 Score=34.76 Aligned_cols=11 Identities=45% Similarity=0.930 Sum_probs=0.0
Q ss_pred CCeeeCCCCce
Q psy4900 194 GGVCQCPEGQK 204 (485)
Q Consensus 194 ~~~C~C~~G~~ 204 (485)
.++|.|++||.
T Consensus 292 ~~~C~C~~G~~ 302 (324)
T 2ygq_A 292 PNKCQCQEGWH 302 (324)
T ss_dssp -----------
T ss_pred CCEeECCCCCc
Confidence 35677777764
No 300
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=53.99 E-value=34 Score=32.67 Aligned_cols=77 Identities=8% Similarity=0.055 Sum_probs=46.8
Q ss_pred CCCCccEEecCCCCeEEEeC--CC---cEEEEEcCCC-CcEEEEe-CCCcccceEEEeCCCCeEEEEeCCCCcEEEEEcc
Q psy4900 400 LTNPTDLALDPTSGLMFVAD--SN---QILRTNMDGT-MAMSIVS-EAAYKASGVALDINAKRLFWCDNLLDYIETVDYE 472 (485)
Q Consensus 400 ~~~p~~iavD~~~~~lywtd--~~---~I~r~~~dG~-~~~~i~~-~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~d 472 (485)
...+.+|++.|....++.+- .. .|...++... .....+. .....+..|++.+..++++.+-...+.|...++.
T Consensus 214 ~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~ 293 (416)
T 2pm9_A 214 KQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPE 293 (416)
T ss_dssp CCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSS
T ss_pred CCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCC
Confidence 45577899999865555444 34 7888888753 2222222 2344567888877455555555556777777776
Q ss_pred CCCe
Q psy4900 473 GKNR 476 (485)
Q Consensus 473 G~~r 476 (485)
....
T Consensus 294 ~~~~ 297 (416)
T 2pm9_A 294 SAEQ 297 (416)
T ss_dssp SCCE
T ss_pred CCcc
Confidence 5443
No 301
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=53.95 E-value=85 Score=32.99 Aligned_cols=71 Identities=6% Similarity=0.025 Sum_probs=46.6
Q ss_pred CccEEecCCCCeEEEeC------CCcEEEEEcCC------C--CcEEEEeCCCcccceEEEeCCCCeEEEEeCC---CCc
Q psy4900 403 PTDLALDPTSGLMFVAD------SNQILRTNMDG------T--MAMSIVSEAAYKASGVALDINAKRLFWCDNL---LDY 465 (485)
Q Consensus 403 p~~iavD~~~~~lywtd------~~~I~r~~~dG------~--~~~~i~~~~~~~p~glavD~~~~~lYW~D~~---~~~ 465 (485)
..++++.|..++|+++. ...|+..++++ . ..+.|....-. ..-.+++..++||++-.. ..+
T Consensus 235 ~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~--~~~~~s~dg~~l~~~s~~~~~~~~ 312 (710)
T 2xdw_A 235 MGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEG--EYDYVTNEGTVFTFKTNRHSPNYR 312 (710)
T ss_dssp EEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSS--CEEEEEEETTEEEEEECTTCTTCE
T ss_pred EEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCc--EEEEEeccCCEEEEEECCCCCCCE
Confidence 34788889888888875 35789999885 3 34445432211 122455668888887543 347
Q ss_pred EEEEEccCCC
Q psy4900 466 IETVDYEGKN 475 (485)
Q Consensus 466 I~~~~~dG~~ 475 (485)
|.+.++++..
T Consensus 313 l~~~d~~~~~ 322 (710)
T 2xdw_A 313 LINIDFTDPE 322 (710)
T ss_dssp EEEEETTSCC
T ss_pred EEEEeCCCCC
Confidence 9999998764
No 302
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=53.25 E-value=1.1e+02 Score=28.17 Aligned_cols=77 Identities=17% Similarity=0.075 Sum_probs=46.8
Q ss_pred CCCCCCccEEecCCCCeEEEeC-CCcEEEEEcCC------------------CCcEEEEeCCCcccceEEEeCCCCeEEE
Q psy4900 398 SNLTNPTDLALDPTSGLMFVAD-SNQILRTNMDG------------------TMAMSIVSEAAYKASGVALDINAKRLFW 458 (485)
Q Consensus 398 ~~~~~p~~iavD~~~~~lywtd-~~~I~r~~~dG------------------~~~~~i~~~~~~~p~glavD~~~~~lYW 458 (485)
.....+.+|++.|...+|+-.. ...|...++.. ......+......+..|++.+....|+.
T Consensus 140 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 219 (372)
T 1k8k_C 140 PIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW 219 (372)
T ss_dssp TCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEE
T ss_pred ccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEE
Confidence 3355677899998766666555 66777777531 1111122223445778888876666665
Q ss_pred EeCCCCcEEEEEccCCC
Q psy4900 459 CDNLLDYIETVDYEGKN 475 (485)
Q Consensus 459 ~D~~~~~I~~~~~dG~~ 475 (485)
.. ..+.|...++....
T Consensus 220 ~~-~d~~i~i~d~~~~~ 235 (372)
T 1k8k_C 220 VS-HDSTVCLADADKKM 235 (372)
T ss_dssp EE-TTTEEEEEEGGGTT
T ss_pred Ee-CCCEEEEEECCCCc
Confidence 54 56778888876444
No 303
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=53.10 E-value=1.3e+02 Score=27.59 Aligned_cols=86 Identities=9% Similarity=-0.054 Sum_probs=55.7
Q ss_pred cceEEE-EecCCCCCCccEEecCCCCeEEEeC-CCcEEEEEcCCCCcEEEEeCCCcccceEEEeCCCCeEEEEeCCCCcE
Q psy4900 389 FQFHAI-VLGSNLTNPTDLALDPTSGLMFVAD-SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYI 466 (485)
Q Consensus 389 g~~~~~-l~~~~~~~p~~iavD~~~~~lywtd-~~~I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I 466 (485)
|+..+. .+...-....+|++.|...+|+-.. .+.|...++........+.........|++.+..+.|+-+ ...+.|
T Consensus 20 G~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~dg~i 98 (369)
T 3zwl_B 20 GSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTG-SADYSI 98 (369)
T ss_dssp CCSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE-ETTTEE
T ss_pred ccccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEE-eCCCeE
Confidence 544443 3445566678899999776676655 6778888877555444454445567788888766666554 345677
Q ss_pred EEEEccCCC
Q psy4900 467 ETVDYEGKN 475 (485)
Q Consensus 467 ~~~~~dG~~ 475 (485)
...++....
T Consensus 99 ~iwd~~~~~ 107 (369)
T 3zwl_B 99 KLWDVSNGQ 107 (369)
T ss_dssp EEEETTTCC
T ss_pred EEEECCCCc
Confidence 777776544
No 304
>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1
Probab=51.17 E-value=4.1 Score=38.31 Aligned_cols=31 Identities=26% Similarity=0.638 Sum_probs=26.7
Q ss_pred CccccccCCCCCCeeeCCCCceeeCCCCCCC
Q psy4900 183 NCEFTCQASPTGGVCQCPEGQKVANDSRTCL 213 (485)
Q Consensus 183 ~C~~~C~n~~~~~~C~C~~G~~l~~~~~~C~ 213 (485)
.|++.|.|+++++.|.|.+||.|..+.+.|.
T Consensus 132 ~c~~~C~n~~g~~~csC~~Gy~L~~d~~~C~ 162 (286)
T 1nt0_A 132 PCDHYCHXYLGGYYCSCRVGYILHQNKHTCS 162 (286)
T ss_dssp CCSSEEEEETTEEEEECCTTEEECTTSSCEE
T ss_pred cCCCccccccCceEeecCCCceeccCCCCcc
Confidence 3678899999999999999999987777764
No 305
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=50.50 E-value=56 Score=34.47 Aligned_cols=108 Identities=11% Similarity=-0.003 Sum_probs=66.9
Q ss_pred cccccCCCCccCCC----CC--CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC-CC------------
Q psy4900 361 STWKCDSENDCGDG----SD--EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD-SN------------ 421 (485)
Q Consensus 361 ~~~~~~~~~~y~~d----~~--~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd-~~------------ 421 (485)
..|.|++..+.+.. ++ .|.+.++. +.....+..... ...+++.-|....||++. ..
T Consensus 130 ~~~SPDg~~la~~~~~~G~~~~~i~v~d~~----tg~~~~~~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~ 204 (710)
T 2xdw_A 130 YAFSEDGEYFAYGLSASGSDWVTIKFMKVD----GAKELPDVLERV-KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST 204 (710)
T ss_dssp EEECTTSSEEEEEEEETTCSCEEEEEEETT----TTEEEEEEEEEE-CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred EEECCCCCEEEEEEcCCCCceEEEEEEECC----CCCCCcccccCc-ccceEEEEeCCCEEEEEEECCcccccccccccc
Confidence 45678887665532 11 67777776 443332221222 256788888878888876 22
Q ss_pred ----cEEEEEcCCCCc-EEEEeCC---CcccceEEEeCCCCeEEEEeC-C---CCcEEEEEccC
Q psy4900 422 ----QILRTNMDGTMA-MSIVSEA---AYKASGVALDINAKRLFWCDN-L---LDYIETVDYEG 473 (485)
Q Consensus 422 ----~I~r~~~dG~~~-~~i~~~~---~~~p~glavD~~~~~lYW~D~-~---~~~I~~~~~dG 473 (485)
+|++..+++... .+++... -.+..++++.+..+.|+++-. . ...|...++++
T Consensus 205 ~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~ 268 (710)
T 2xdw_A 205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQ 268 (710)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred CCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcc
Confidence 399999875442 2333222 223568888888888888754 2 46889999885
No 306
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=50.27 E-value=1.1e+02 Score=28.54 Aligned_cols=76 Identities=13% Similarity=0.092 Sum_probs=50.2
Q ss_pred CCCCccEEecCCCCeEEEeC-C---CcEEEEEcCCCCcEEEEeC-------------CCcccceEEEeCCCCeEEEEeCC
Q psy4900 400 LTNPTDLALDPTSGLMFVAD-S---NQILRTNMDGTMAMSIVSE-------------AAYKASGVALDINAKRLFWCDNL 462 (485)
Q Consensus 400 ~~~p~~iavD~~~~~lywtd-~---~~I~r~~~dG~~~~~i~~~-------------~~~~p~glavD~~~~~lYW~D~~ 462 (485)
...+.+|++.|...+|+... . ..|...++........+.. ....+..|++.+..+.|+-. ..
T Consensus 233 ~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~ 311 (397)
T 1sq9_A 233 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA-GW 311 (397)
T ss_dssp CCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEE-ET
T ss_pred CCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEE-eC
Confidence 45677899999876666655 5 6888888875544434433 34456788888766666554 35
Q ss_pred CCcEEEEEccCCCe
Q psy4900 463 LDYIETVDYEGKNR 476 (485)
Q Consensus 463 ~~~I~~~~~dG~~r 476 (485)
.+.|...++.....
T Consensus 312 dg~i~iwd~~~~~~ 325 (397)
T 1sq9_A 312 DGKLRFWDVKTKER 325 (397)
T ss_dssp TSEEEEEETTTTEE
T ss_pred CCeEEEEEcCCCce
Confidence 67788888765443
No 307
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=49.78 E-value=23 Score=37.77 Aligned_cols=111 Identities=15% Similarity=0.164 Sum_probs=61.9
Q ss_pred cccccCCCCccCCCC------CCccccccCcccccc--e-EEEEecCCCCCCccEEecCCCCeEEEeC-----CCcEEEE
Q psy4900 361 STWKCDSENDCGDGS------DEGDFCSEKTCAYFQ--F-HAIVLGSNLTNPTDLALDPTSGLMFVAD-----SNQILRT 426 (485)
Q Consensus 361 ~~~~~~~~~~y~~d~------~~I~~~~~~~c~~g~--~-~~~l~~~~~~~p~~iavD~~~~~lywtd-----~~~I~r~ 426 (485)
..|.+++..+.+... ..|.+.+++ +. . ...|. ........ .+.+..+.||+.. ..+|+++
T Consensus 273 ~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~----~~~~~~~~~l~-~~~~~~~~-~~~~dg~~l~~~s~~~~~~~~l~~~ 346 (741)
T 1yr2_A 273 ASVSSDGRWVVITSSEGTDPVNTVHVARVT----NGKIGPVTALI-PDLKAQWD-FVDGVGDQLWFVSGDGAPLKKIVRV 346 (741)
T ss_dssp EEECTTSCEEEEEEECTTCSCCEEEEEEEE----TTEECCCEEEE-CSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEE
T ss_pred EEECCCCCEEEEEEEccCCCcceEEEEECC----CCCCcccEEec-CCCCceEE-EEeccCCEEEEEECCCCCCCEEEEE
Confidence 345666655544321 156666665 43 2 23333 22222222 2346677777764 3569999
Q ss_pred EcCCC--CcEEEEeCCCcccceEEEeCCCCeEEEEeCC--CCcEEEEEccCCCeEEE
Q psy4900 427 NMDGT--MAMSIVSEAAYKASGVALDINAKRLFWCDNL--LDYIETVDYEGKNRFLI 479 (485)
Q Consensus 427 ~~dG~--~~~~i~~~~~~~p~glavD~~~~~lYW~D~~--~~~I~~~~~dG~~r~~~ 479 (485)
++++. ..+.|+...-....+++++ .++|+++-.. ..+|.+.+++|+..+.|
T Consensus 347 d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l 401 (741)
T 1yr2_A 347 DLSGSTPRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKPAGAV 401 (741)
T ss_dssp ECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCEEEEC
T ss_pred eCCCCccccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCceeec
Confidence 99873 4566664433334455544 7888877544 35677888877754443
No 308
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=49.77 E-value=38 Score=32.20 Aligned_cols=92 Identities=9% Similarity=-0.109 Sum_probs=53.3
Q ss_pred CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC-CCcEEEEEcCCCC--------------------cEE
Q psy4900 377 EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD-SNQILRTNMDGTM--------------------AMS 435 (485)
Q Consensus 377 ~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd-~~~I~r~~~dG~~--------------------~~~ 435 (485)
.|.+.++. .......+......+.+|++.|...+|+... .+.|...++.... ...
T Consensus 311 ~i~i~d~~----~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (425)
T 1r5m_A 311 SVRLWSLK----QNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYA 386 (425)
T ss_dssp EEEEEETT----TTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEE
T ss_pred cEEEEECC----CCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhh
Confidence 55555554 2223233333445677899998876666655 6677777776433 222
Q ss_pred EEeCCCc--ccceEEEeCCCCeEEEEeCCCCcEEEEEccC
Q psy4900 436 IVSEAAY--KASGVALDINAKRLFWCDNLLDYIETVDYEG 473 (485)
Q Consensus 436 i~~~~~~--~p~glavD~~~~~lYW~D~~~~~I~~~~~dG 473 (485)
.+..... .+..|++.+..+.|+-+. ..+.|...+++|
T Consensus 387 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~g 425 (425)
T 1r5m_A 387 SYQSSQDNDYIFDLSWNCAGNKISVAY-SLQEGSVVAIPG 425 (425)
T ss_dssp EECCTTCCCCEEEEEECTTSSEEEEEE-SSSCCEEEECCC
T ss_pred hhcCcccCCceEEEEccCCCceEEEEe-cCceEEEEeecC
Confidence 2322222 677788877666665543 445666666655
No 309
>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}
Probab=49.71 E-value=4.7 Score=37.59 Aligned_cols=31 Identities=32% Similarity=0.712 Sum_probs=26.7
Q ss_pred CccccccCCCCCCeeeCCCCceeeCCCCCCC
Q psy4900 183 NCEFTCQASPTGGVCQCPEGQKVANDSRTCL 213 (485)
Q Consensus 183 ~C~~~C~n~~~~~~C~C~~G~~l~~~~~~C~ 213 (485)
.|.+.|.|.+++++|.|.+||.+..+.+.|.
T Consensus 133 ~c~~~C~n~~g~~~C~C~~Gy~l~~d~~~C~ 163 (278)
T 3dem_A 133 SCDHYCHNYIGGYYCSCRFGYILHTDNRTCR 163 (278)
T ss_dssp CCSSEEEEETTEEEEECCTTCEECTTSSCEE
T ss_pred cCCcCcCCccCCcEEEeCCcceeccCCCCCc
Confidence 4677899999999999999999987777775
No 310
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A
Probab=48.67 E-value=3 Score=29.34 Aligned_cols=24 Identities=25% Similarity=0.659 Sum_probs=18.1
Q ss_pred ccccC-----CCCCCeeeCCCCceeeCCCCCCC
Q psy4900 186 FTCQA-----SPTGGVCQCPEGQKVANDSRTCL 213 (485)
Q Consensus 186 ~~C~n-----~~~~~~C~C~~G~~l~~~~~~C~ 213 (485)
..|.+ ..++|.|.|++||. +..|.
T Consensus 18 G~C~~~~~~~~~~~y~C~C~~Gf~----G~~Ce 46 (63)
T 1hae_A 18 GECFMVKDLSNPSRYLCKCQPGFT----GARCT 46 (63)
T ss_dssp CEEEEEESSSSSCCEEEECCTTEE----STTSC
T ss_pred cEEecCCccCCCCCEEEECCCCCc----CCccC
Confidence 35764 66889999999995 45674
No 311
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=48.06 E-value=1.2e+02 Score=30.27 Aligned_cols=96 Identities=10% Similarity=0.097 Sum_probs=59.6
Q ss_pred CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC-CCcEEEEEcCCCCcEEEEeCCCcccceEEEeCCCCe
Q psy4900 377 EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD-SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKR 455 (485)
Q Consensus 377 ~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd-~~~I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~~ 455 (485)
.|.+.+.+ +....++. ..-....+|++.|...+|.-.. ...|...++++.....+. .....+..|++.+..+.
T Consensus 408 ~v~~~~~~----~~~~~~~~-~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~-~~~~~v~~~~~spd~~~ 481 (577)
T 2ymu_A 408 TVKLWNRN----GQLLQTLT-GHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLT-GHSSSVRGVAFSPDGQT 481 (577)
T ss_dssp EEEEECTT----CCEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEE-CCSSCEEEEEECTTSCE
T ss_pred EEEEEeCC----CCEEEEec-CCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEc-CCCCCEEEEEEcCCCCE
Confidence 44444555 55554443 3344567799998877776555 677777788776555544 33445678888876666
Q ss_pred EEEEeCCCCcEEEEEccCCCeEEE
Q psy4900 456 LFWCDNLLDYIETVDYEGKNRFLI 479 (485)
Q Consensus 456 lYW~D~~~~~I~~~~~dG~~r~~~ 479 (485)
|.-+. ..+.|..-+++|...+++
T Consensus 482 las~~-~d~~i~iw~~~~~~~~~~ 504 (577)
T 2ymu_A 482 IASAS-DDKTVKLWNRNGQLLQTL 504 (577)
T ss_dssp EEEEE-TTSEEEEEETTSCEEEEE
T ss_pred EEEEe-CCCEEEEEcCCCCEEEEE
Confidence 65543 455677667776655443
No 312
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=48.00 E-value=82 Score=33.30 Aligned_cols=109 Identities=6% Similarity=-0.118 Sum_probs=68.1
Q ss_pred cccccCCCCccCCCCC-CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC-CCcEEEEEcCCCCcEEEEe
Q psy4900 361 STWKCDSENDCGDGSD-EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD-SNQILRTNMDGTMAMSIVS 438 (485)
Q Consensus 361 ~~~~~~~~~~y~~d~~-~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd-~~~I~r~~~dG~~~~~i~~ 438 (485)
..|.|++..+.....+ .|.+.+..+ |.....+. ..-...++|++.|...+|.-.. .+.|...++........+.
T Consensus 19 i~~sp~~~~la~~~~~g~v~iwd~~~---~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 94 (814)
T 3mkq_A 19 IDFHPTEPWVLTTLYSGRVEIWNYET---QVEVRSIQ-VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE 94 (814)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTT---TEEEEEEE-CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCC---CceEEEEe-cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence 3455655544443333 555556541 33333333 3445577899999877777766 6788888887555444454
Q ss_pred CCCcccceEEEeCCCCeEEEEeCCCCcEEEEEccCC
Q psy4900 439 EAAYKASGVALDINAKRLFWCDNLLDYIETVDYEGK 474 (485)
Q Consensus 439 ~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG~ 474 (485)
.....+..|++.+...+|+-.. ..+.|...++++.
T Consensus 95 ~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vw~~~~~ 129 (814)
T 3mkq_A 95 AHPDYIRSIAVHPTKPYVLSGS-DDLTVKLWNWENN 129 (814)
T ss_dssp CCSSCEEEEEECSSSSEEEEEE-TTSEEEEEEGGGT
T ss_pred cCCCCEEEEEEeCCCCEEEEEc-CCCEEEEEECCCC
Confidence 4555677888887777777544 4567777777754
No 313
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=47.81 E-value=90 Score=29.39 Aligned_cols=76 Identities=5% Similarity=-0.055 Sum_probs=46.3
Q ss_pred CCCCCCccEEecCCCCeEEEeC-CCcEEEEEcCCCCcEEEEeCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEccCCC
Q psy4900 398 SNLTNPTDLALDPTSGLMFVAD-SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEGKN 475 (485)
Q Consensus 398 ~~~~~p~~iavD~~~~~lywtd-~~~I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG~~ 475 (485)
........|++.|...+|+-.. ...|...++........+......+..|++.+.. ++.+-...+.|...++....
T Consensus 245 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~ 321 (425)
T 1r5m_A 245 GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNT 321 (425)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTE
T ss_pred cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCc
Confidence 3344567788988776666655 6778777777544333443344456677777544 44444556667776665433
No 314
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=47.51 E-value=1.9e+02 Score=27.38 Aligned_cols=78 Identities=9% Similarity=-0.039 Sum_probs=52.2
Q ss_pred CCCCCCccEEecCCCCeEEEeC-CCcEEEEEcCCCCcEEEEeCCCcccceEEEeCCCCeEEEEeC--CCCcEEEEEccCC
Q psy4900 398 SNLTNPTDLALDPTSGLMFVAD-SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDN--LLDYIETVDYEGK 474 (485)
Q Consensus 398 ~~~~~p~~iavD~~~~~lywtd-~~~I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~~lYW~D~--~~~~I~~~~~dG~ 474 (485)
.......+|++.|...+|+-.. .+.|...++........+......+..|++.+....|+.+-. ..+.|...++...
T Consensus 215 ~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~ 294 (401)
T 4aez_A 215 GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG 294 (401)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC
T ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC
Confidence 4455677899998666666555 678888888865544444445556778888877777777654 4566777776544
Q ss_pred C
Q psy4900 475 N 475 (485)
Q Consensus 475 ~ 475 (485)
.
T Consensus 295 ~ 295 (401)
T 4aez_A 295 A 295 (401)
T ss_dssp C
T ss_pred C
Confidence 3
No 315
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=47.36 E-value=1.4e+02 Score=28.33 Aligned_cols=106 Identities=10% Similarity=0.028 Sum_probs=57.6
Q ss_pred ccccCCCCccCCCCC-CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC-CCcEEEEEcCCCCcEEEEeC
Q psy4900 362 TWKCDSENDCGDGSD-EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD-SNQILRTNMDGTMAMSIVSE 439 (485)
Q Consensus 362 ~~~~~~~~~y~~d~~-~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd-~~~I~r~~~dG~~~~~i~~~ 439 (485)
.|.+++..+.....+ .|.+.++. .......+........+|++.|...+|+-.. ...|..-++........+.
T Consensus 130 ~~s~dg~~l~s~~~d~~i~iwd~~----~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~- 204 (393)
T 1erj_A 130 CFSPDGKFLATGAEDRLIRIWDIE----NRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS- 204 (393)
T ss_dssp EECTTSSEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-
T ss_pred EECCCCCEEEEEcCCCeEEEEECC----CCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-
Confidence 345555444443333 56666665 4434344445556677899988877766554 5667766766443222222
Q ss_pred CCcccceEEEeCCCCeEEEEeCCCCcEEEEEcc
Q psy4900 440 AAYKASGVALDINAKRLFWCDNLLDYIETVDYE 472 (485)
Q Consensus 440 ~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~d 472 (485)
.-..+..+++.+..++++.+-...+.|...++.
T Consensus 205 ~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~ 237 (393)
T 1erj_A 205 IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 237 (393)
T ss_dssp CSSCEEEEEECSTTCCEEEEEETTSCEEEEETT
T ss_pred cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence 223455677766455554444444555555544
No 316
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Probab=46.95 E-value=9.7 Score=29.76 Aligned_cols=58 Identities=24% Similarity=0.474 Sum_probs=39.6
Q ss_pred cccC-CCCCCeeeCCCCceeeCCCCCCCCcchhhhccccccccccccceeheeheeeeeeecccCCCCCCCCCCCCCCCC
Q psy4900 187 TCQA-SPTGGVCQCPEGQKVANDSRTCLLYMKNNLKQAVRSSTVSSHVKLVLLEVYVNVLKVRKLPTTAEPQSPNPCGSN 265 (485)
Q Consensus 187 ~C~n-~~~~~~C~C~~G~~l~~~~~~C~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~C~~~ 265 (485)
.|.. .+|...|.|..||.. ++..|..++. .|..+
T Consensus 23 ~C~r~~~G~e~CrCl~gY~~--dg~~Cv~~Np-------------------------------------------~C~~n 57 (105)
T 1n1i_A 23 ACYRYLDGTEEWRCLLGFKE--VGGKCVPASI-------------------------------------------TCEEN 57 (105)
T ss_dssp EEEECTTSCEEEEECTTEEE--CSSSEEECCC-------------------------------------------CTTSG
T ss_pred CeEECCCCCEeEEEECCeec--cCCEEEECCc-------------------------------------------chhhc
Confidence 4555 678889999999985 4666754422 16667
Q ss_pred CCCcc--ccccccccCCCCCCccccCCCCc
Q psy4900 266 NGGCE--HMCIITRASGNALGYKCACDIGY 293 (485)
Q Consensus 266 ~g~C~--~~C~n~~~~~~~g~~~C~C~~Gy 293 (485)
+|+|. ..|..+. ...-.|.|..||
T Consensus 58 NGGCd~nAeC~~~~----~~ki~C~C~~~~ 83 (105)
T 1n1i_A 58 NGGCAPEAECTMDD----KKEVECKCTKEG 83 (105)
T ss_dssp GGGSCTTSEEEECT----TSCEEEECCSTT
T ss_pred CCCcCCCcEeEECC----CCEEEeECCCCC
Confidence 78886 4676652 056778888886
No 317
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=46.92 E-value=70 Score=30.11 Aligned_cols=105 Identities=5% Similarity=-0.058 Sum_probs=62.4
Q ss_pred cccCCCCccCCCCC-CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC--CCcEEEEEcCC----CCcEE
Q psy4900 363 WKCDSENDCGDGSD-EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD--SNQILRTNMDG----TMAMS 435 (485)
Q Consensus 363 ~~~~~~~~y~~d~~-~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG----~~~~~ 435 (485)
+.+++..+.....+ .|.+.++. +.....+. .......+|++.|....++.+- ...|...++.. .....
T Consensus 171 ~~~~~~~l~~~~~d~~i~i~d~~----~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 245 (383)
T 3ei3_B 171 VSVSRQMLATGDSTGRLLLLGLD----GHEIFKEK-LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIA 245 (383)
T ss_dssp EETTTTEEEEEETTSEEEEEETT----SCEEEEEE-CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEE
T ss_pred ECCCCCEEEEECCCCCEEEEECC----CCEEEEec-cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEE
Confidence 34444444433333 55555665 65555543 4456678899999877344444 67788888774 11122
Q ss_pred EEeCCCcccceEEEeC-CCCeEEEEeCCCCcEEEEEccCC
Q psy4900 436 IVSEAAYKASGVALDI-NAKRLFWCDNLLDYIETVDYEGK 474 (485)
Q Consensus 436 i~~~~~~~p~glavD~-~~~~lYW~D~~~~~I~~~~~dG~ 474 (485)
.+ .....+..|++++ ....|+.. ...+.|...++...
T Consensus 246 ~~-~~~~~v~~~~~s~~~~~~l~~~-~~d~~i~iwd~~~~ 283 (383)
T 3ei3_B 246 EM-PHEKPVNAAYFNPTDSTKLLTT-DQRNEIRVYSSYDW 283 (383)
T ss_dssp EE-ECSSCEEEEEECTTTSCEEEEE-ESSSEEEEEETTBT
T ss_pred Ee-cCCCceEEEEEcCCCCCEEEEE-cCCCcEEEEECCCC
Confidence 22 3455678899988 55555554 45678888887643
No 318
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=46.88 E-value=81 Score=28.80 Aligned_cols=92 Identities=10% Similarity=-0.024 Sum_probs=51.8
Q ss_pred CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC-CCcEEEEEcCCC-CcEEEEeCCCcccceEEEeCCCC
Q psy4900 377 EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD-SNQILRTNMDGT-MAMSIVSEAAYKASGVALDINAK 454 (485)
Q Consensus 377 ~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd-~~~I~r~~~dG~-~~~~i~~~~~~~p~glavD~~~~ 454 (485)
.|.+.++.+ +..... +........+|++.|...+|+=.. ...|..-++... .....+.........|++.+..+
T Consensus 78 ~i~vwd~~~---~~~~~~-~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~ 153 (304)
T 2ynn_A 78 RIRVFNYNT---GEKVVD-FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDP 153 (304)
T ss_dssp EEEEEETTT---CCEEEE-EECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCT
T ss_pred EEEEEECCC---CcEEEE-EeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCC
Confidence 455555541 333333 334455677899998876665444 667777777643 22333433445567788777555
Q ss_pred eEEEEeCCCCcEEEEEcc
Q psy4900 455 RLFWCDNLLDYIETVDYE 472 (485)
Q Consensus 455 ~lYW~D~~~~~I~~~~~d 472 (485)
.++-+-...+.|..-++.
T Consensus 154 ~~l~sgs~D~~v~iwd~~ 171 (304)
T 2ynn_A 154 STFASGCLDRTVKVWSLG 171 (304)
T ss_dssp TEEEEEETTSEEEEEETT
T ss_pred CEEEEEeCCCeEEEEECC
Confidence 544444445556555553
No 319
>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*
Probab=44.88 E-value=1.3 Score=41.34 Aligned_cols=20 Identities=10% Similarity=-0.147 Sum_probs=15.8
Q ss_pred ccccCCCCCCeeeCCCCcee
Q psy4900 186 FTCQASPTGGVCQCPEGQKV 205 (485)
Q Consensus 186 ~~C~n~~~~~~C~C~~G~~l 205 (485)
.+|.+...+|.|.||.||.-
T Consensus 44 G~C~~g~~~y~C~Cp~Gf~G 63 (267)
T 4fbr_A 44 GKTLKGTMTYNGEGPIGFRG 63 (267)
T ss_dssp TSEEEEEEEETTSCCEEEEE
T ss_pred CeecCCCCCeEEeCCCCccc
Confidence 46777778899999999863
No 320
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=44.83 E-value=1.2e+02 Score=30.43 Aligned_cols=95 Identities=11% Similarity=0.100 Sum_probs=60.1
Q ss_pred CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC-CCcEEEEEcCCCCcEEEEeCCCcccceEEEeCCCCe
Q psy4900 377 EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD-SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKR 455 (485)
Q Consensus 377 ~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd-~~~I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~~ 455 (485)
.|.+.+++ +.....+. .....+.+|++.|...+|.-+. ...|..-+++|...+++. .....+..|++.+..+.
T Consensus 449 ~v~~w~~~----~~~~~~~~-~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~-~h~~~v~~l~~s~dg~~ 522 (577)
T 2ymu_A 449 TVKLWNRN----GQLLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT-GHSSSVRGVAFSPDGQT 522 (577)
T ss_dssp EEEEEETT----SCEEEEEE-CCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEE-CCSSCEEEEEECTTSSC
T ss_pred EEEEEECC----CCEEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEe-CCCCCEEEEEEcCCCCE
Confidence 34444555 55444443 3445667899999877776655 677777788877655554 33455778888877766
Q ss_pred EEEEeCCCCcEEEEEccCCCeEE
Q psy4900 456 LFWCDNLLDYIETVDYEGKNRFL 478 (485)
Q Consensus 456 lYW~D~~~~~I~~~~~dG~~r~~ 478 (485)
|.=+. ..+.|..-+++|....+
T Consensus 523 l~s~~-~dg~v~lwd~~~~~~~~ 544 (577)
T 2ymu_A 523 IASAS-DDKTVKLWNRNGQLLQT 544 (577)
T ss_dssp EEEEE-TTSEEEEECTTSCEEEE
T ss_pred EEEEE-CcCEEEEEeCCCCEEEE
Confidence 66443 34667777777665444
No 321
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=44.22 E-value=73 Score=30.95 Aligned_cols=77 Identities=12% Similarity=0.180 Sum_probs=48.6
Q ss_pred CCCCCCccEEecCCCCeEEEeC--CCcEEEEEcCCCCcEEEEeCCC--cccceEEEeCCCCeEEEEeCCCCcEEEEEccC
Q psy4900 398 SNLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTMAMSIVSEAA--YKASGVALDINAKRLFWCDNLLDYIETVDYEG 473 (485)
Q Consensus 398 ~~~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~~~~i~~~~~--~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG 473 (485)
..-....+|++.|..+.++.+- .+.|..-++.+...+++..... .+...|++++....|+ +-...+.|...+++|
T Consensus 162 gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~g~~dg~i~~wd~~~ 240 (435)
T 4e54_B 162 GAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVV-TGDNVGNVILLNMDG 240 (435)
T ss_dssp SSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEE-EECSSSBEEEEESSS
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEE-EEeCCCcEeeeccCc
Confidence 3455678899998766555554 6778888888766555554332 2356788776555544 334556777777766
Q ss_pred CC
Q psy4900 474 KN 475 (485)
Q Consensus 474 ~~ 475 (485)
..
T Consensus 241 ~~ 242 (435)
T 4e54_B 241 KE 242 (435)
T ss_dssp CB
T ss_pred ce
Confidence 54
No 322
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=42.71 E-value=1.7e+02 Score=26.90 Aligned_cols=77 Identities=12% Similarity=0.173 Sum_probs=48.6
Q ss_pred CCCCCCccEEecCC--CCeEEEeC-CCcEEEEEcCCCC--cEEEEeCCCcccceEEEeCC------------CCeEEEEe
Q psy4900 398 SNLTNPTDLALDPT--SGLMFVAD-SNQILRTNMDGTM--AMSIVSEAAYKASGVALDIN------------AKRLFWCD 460 (485)
Q Consensus 398 ~~~~~p~~iavD~~--~~~lywtd-~~~I~r~~~dG~~--~~~i~~~~~~~p~glavD~~------------~~~lYW~D 460 (485)
.......+|++.|. ..+|+-.. ...|...++.... ....+.........|++.+. .+.++.+-
T Consensus 99 ~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 178 (379)
T 3jrp_A 99 VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG 178 (379)
T ss_dssp CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEE
T ss_pred CCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEE
Confidence 34556778999988 55666555 6778888877552 33344444555677777764 34555555
Q ss_pred CCCCcEEEEEccCC
Q psy4900 461 NLLDYIETVDYEGK 474 (485)
Q Consensus 461 ~~~~~I~~~~~dG~ 474 (485)
...+.|...++...
T Consensus 179 ~~dg~i~i~d~~~~ 192 (379)
T 3jrp_A 179 GADNLVKIWKYNSD 192 (379)
T ss_dssp ETTSCEEEEEEETT
T ss_pred eCCCeEEEEEecCC
Confidence 55667777777643
No 323
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=42.06 E-value=2.2e+02 Score=27.20 Aligned_cols=95 Identities=7% Similarity=-0.075 Sum_probs=52.8
Q ss_pred CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC-CCcEEEEEcCCCCcEEEEeCCCcccceEEEeCCCCe
Q psy4900 377 EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD-SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKR 455 (485)
Q Consensus 377 ~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd-~~~I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~~ 455 (485)
.|.+.++. +......+........+|++.|...+|+-.. .+.|..-++........+.....+...+++.+.. +
T Consensus 173 ~i~iwd~~----~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g-~ 247 (410)
T 1vyh_C 173 TIKLWDFQ----GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG-T 247 (410)
T ss_dssp CCCEEETT----SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-S
T ss_pred eEEEEeCC----CCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCC-C
Confidence 45555554 3332222334445567789988766665444 6777777776444333343444556677776544 4
Q ss_pred EEEEeCCCCcEEEEEccCCCe
Q psy4900 456 LFWCDNLLDYIETVDYEGKNR 476 (485)
Q Consensus 456 lYW~D~~~~~I~~~~~dG~~r 476 (485)
++.+-...+.|..-++.....
T Consensus 248 ~l~s~s~D~~v~vwd~~~~~~ 268 (410)
T 1vyh_C 248 LIASCSNDQTVRVWVVATKEC 268 (410)
T ss_dssp EEEEEETTSCEEEEETTTCCE
T ss_pred EEEEEcCCCeEEEEECCCCce
Confidence 444444556677766654443
No 324
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=41.86 E-value=40 Score=33.02 Aligned_cols=74 Identities=14% Similarity=0.058 Sum_probs=48.6
Q ss_pred CCCCccEEecCC---CCeEEEeC-CCcEEEEEcCCCCc-EEEEeCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEccCC
Q psy4900 400 LTNPTDLALDPT---SGLMFVAD-SNQILRTNMDGTMA-MSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEGK 474 (485)
Q Consensus 400 ~~~p~~iavD~~---~~~lywtd-~~~I~r~~~dG~~~-~~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG~ 474 (485)
...+.+|++.|. ..+|+-+. ...|...++..... ..++......+..|++. ..+.|+.. ...+.|...++...
T Consensus 195 ~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~-~~d~~v~vwd~~~~ 272 (450)
T 2vdu_B 195 VSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSA-GGDDKIFAWDWKTG 272 (450)
T ss_dssp SSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEE-ESSSEEEEEETTTC
T ss_pred cCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEE-eCCCeEEEEECCCC
Confidence 345677889887 54565555 67888888875443 33343445567888888 55566655 46678888888755
Q ss_pred C
Q psy4900 475 N 475 (485)
Q Consensus 475 ~ 475 (485)
.
T Consensus 273 ~ 273 (450)
T 2vdu_B 273 K 273 (450)
T ss_dssp C
T ss_pred c
Confidence 4
No 325
>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A
Probab=41.49 E-value=7.2 Score=25.51 Aligned_cols=18 Identities=22% Similarity=0.563 Sum_probs=13.5
Q ss_pred cccCCC--CCCeeeCCCCce
Q psy4900 187 TCQASP--TGGVCQCPEGQK 204 (485)
Q Consensus 187 ~C~n~~--~~~~C~C~~G~~ 204 (485)
.|.... ++|.|.|++||.
T Consensus 18 ~C~~~~~~~~~~C~C~~Gyt 37 (46)
T 1k36_A 18 QCIYLVDMSQNYCRCEVGYT 37 (46)
T ss_dssp EEEEETTTTEEEEEECTTCS
T ss_pred EeeccCCCCCEEEECCCCCc
Confidence 565433 579999999994
No 326
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=41.47 E-value=97 Score=30.01 Aligned_cols=81 Identities=15% Similarity=0.179 Sum_probs=52.9
Q ss_pred CCCccEEecCCCCeEEEeC--CCcEEEEEcCCCCcEEEEeC--CCcccceEEEeCCCCeEEEEeCCCCcEEEEEccCCCe
Q psy4900 401 TNPTDLALDPTSGLMFVAD--SNQILRTNMDGTMAMSIVSE--AAYKASGVALDINAKRLFWCDNLLDYIETVDYEGKNR 476 (485)
Q Consensus 401 ~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~~~~i~~~--~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG~~r 476 (485)
....+|+++|..+.|..+- .+.|..-+++......++.. ......+|++.+..++++.+=+..+.|..-++.+...
T Consensus 120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~ 199 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL 199 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE
T ss_pred CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce
Confidence 3467889988766544443 67787778876655554432 2345678888876666666666677888888877665
Q ss_pred EEEec
Q psy4900 477 FLILR 481 (485)
Q Consensus 477 ~~~~~ 481 (485)
+++..
T Consensus 200 ~~~~~ 204 (435)
T 4e54_B 200 RVFAS 204 (435)
T ss_dssp EEEEC
T ss_pred eEEec
Confidence 55543
No 327
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=41.35 E-value=1e+02 Score=32.24 Aligned_cols=109 Identities=11% Similarity=0.009 Sum_probs=58.4
Q ss_pred cccccCCCCccCCCCC--------------CccccccCcccccceEEEEecCCCC---CCccEEecCCCCeEEEeC-CC-
Q psy4900 361 STWKCDSENDCGDGSD--------------EGDFCSEKTCAYFQFHAIVLGSNLT---NPTDLALDPTSGLMFVAD-SN- 421 (485)
Q Consensus 361 ~~~~~~~~~~y~~d~~--------------~I~~~~~~~c~~g~~~~~l~~~~~~---~p~~iavD~~~~~lywtd-~~- 421 (485)
..|.+++..++++..+ .|.+.++.+ +.....++...-. ...++++.|...+|+++. ..
T Consensus 173 ~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t---~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 249 (695)
T 2bkl_A 173 PKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGT---EPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGW 249 (695)
T ss_dssp CEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTS---CGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETT
T ss_pred eEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCC---CchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCC
Confidence 4577787777665432 255555541 2211223322222 234678888888888776 22
Q ss_pred ---cEEEEEcCCCCcEEEEeCCCcccceEEEeCCCCeEEEEeC---CCCcEEEEEccCCC
Q psy4900 422 ---QILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDN---LLDYIETVDYEGKN 475 (485)
Q Consensus 422 ---~I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~~lYW~D~---~~~~I~~~~~dG~~ 475 (485)
.|+..+..+...+.|....-. ..... ....+ ||++-. ...+|.+.++++..
T Consensus 250 ~~~~l~~~~~~~~~~~~l~~~~~~-~~~~~-~~~g~-l~~~s~~~~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 250 SENDVYWKRPGEKDFRLLVKGVGA-KYEVH-AWKDR-FYVLTDEGAPRQRVFEVDPAKPA 306 (695)
T ss_dssp TEEEEEEECTTCSSCEEEEECSSC-CEEEE-EETTE-EEEEECTTCTTCEEEEEBTTBCS
T ss_pred CceEEEEEcCCCCceEEeecCCCc-eEEEE-ecCCc-EEEEECCCCCCCEEEEEeCCCCC
Confidence 677776655555555543221 12222 23344 666543 34788888887655
No 328
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=40.95 E-value=1.5e+02 Score=26.96 Aligned_cols=99 Identities=12% Similarity=0.108 Sum_probs=57.6
Q ss_pred CCccCCCCCCccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC-CCcEEEEEcCCCCcEEEEeCCCcccce
Q psy4900 368 ENDCGDGSDEGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD-SNQILRTNMDGTMAMSIVSEAAYKASG 446 (485)
Q Consensus 368 ~~~y~~d~~~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd-~~~I~r~~~dG~~~~~i~~~~~~~p~g 446 (485)
+++|... ..|...+.+ |....... .....+.++++|.. |.||... ...|.+.+.+|.....+- .....+..
T Consensus 188 g~l~v~t-~~l~~~d~~----g~~~~~~~-~~~~~~~~~~~~~~-g~l~v~t~~~gl~~~~~~g~~~~~~~-~~~~~~~~ 259 (330)
T 3hxj_A 188 GTIYFGS-DKVYAINPD----GTEKWNFY-AGYWTVTRPAISED-GTIYVTSLDGHLYAINPDGTEKWRFK-TGKRIESS 259 (330)
T ss_dssp CCEEEES-SSEEEECTT----SCEEEEEC-CSSCCCSCCEECTT-SCEEEEETTTEEEEECTTSCEEEEEE-CSSCCCSC
T ss_pred CEEEEEe-CEEEEECCC----CcEEEEEc-cCCcceeceEECCC-CeEEEEcCCCeEEEECCCCCEeEEee-CCCCcccc
Confidence 4455544 555555544 55443332 23345778899865 6788776 678888876665543332 22333456
Q ss_pred EEEeCCCCeEEEEeCCCCcEEEEEccCCCe
Q psy4900 447 VALDINAKRLFWCDNLLDYIETVDYEGKNR 476 (485)
Q Consensus 447 lavD~~~~~lYW~D~~~~~I~~~~~dG~~r 476 (485)
+++| ..++||... ..+.|.+.+.+|..+
T Consensus 260 ~~~~-~~g~l~v~t-~~ggl~~~d~~g~~~ 287 (330)
T 3hxj_A 260 PVIG-NTDTIYFGS-YDGHLYAINPDGTEK 287 (330)
T ss_dssp CEEC-TTSCEEEEC-TTCEEEEECTTSCEE
T ss_pred ceEc-CCCeEEEec-CCCCEEEECCCCcEE
Confidence 7776 456666554 345677777666543
No 329
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=40.83 E-value=58 Score=30.81 Aligned_cols=106 Identities=11% Similarity=0.110 Sum_probs=50.5
Q ss_pred cccCCCCccCCCCC-CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC--CCcEEEEEcCCCCcEEEEe-
Q psy4900 363 WKCDSENDCGDGSD-EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTMAMSIVS- 438 (485)
Q Consensus 363 ~~~~~~~~y~~d~~-~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~~~~i~~- 438 (485)
+.+++..+.-...+ .|.+.++. .......+........+|++.+....++.+- .+.|..-++........+.
T Consensus 147 ~spdg~~l~sgs~dg~v~iwd~~----~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~ 222 (357)
T 4g56_B 147 VFSDGTQAVSGGKDFSVKVWDLS----QKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF 222 (357)
T ss_dssp ECSSSSEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC
T ss_pred ECCCCCEEEEEeCCCeEEEEECC----CCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeee
Confidence 44444433332222 45555554 3333333334455566788877655444443 4556655554322211111
Q ss_pred -CCCcccceEEEeCCCCeEEEEeCCCCcEEEEEcc
Q psy4900 439 -EAAYKASGVALDINAKRLFWCDNLLDYIETVDYE 472 (485)
Q Consensus 439 -~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~d 472 (485)
..-..+..|++.+..++++.+-...+.|...++.
T Consensus 223 ~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~ 257 (357)
T 4g56_B 223 CASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK 257 (357)
T ss_dssp TTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESS
T ss_pred ccccccccchhhhhcccceEEEeecccceeEEECC
Confidence 1122355666665556555554444555555554
No 330
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=40.50 E-value=2.2e+02 Score=26.44 Aligned_cols=83 Identities=13% Similarity=0.148 Sum_probs=55.8
Q ss_pred cCCCCCCccEEecCCC-CeEEEeC-CCcEEEEEcCCCCcEEEEeC--CCcccceEEEeCCCCeEEEEeCCCCcEEEEEcc
Q psy4900 397 GSNLTNPTDLALDPTS-GLMFVAD-SNQILRTNMDGTMAMSIVSE--AAYKASGVALDINAKRLFWCDNLLDYIETVDYE 472 (485)
Q Consensus 397 ~~~~~~p~~iavD~~~-~~lywtd-~~~I~r~~~dG~~~~~i~~~--~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~d 472 (485)
........+|++.|.. .+|+-.. .+.|..-++.......++.. ......+|++.+..++++.+-...+.|..-++.
T Consensus 70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (383)
T 3ei3_B 70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFS 149 (383)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETT
T ss_pred cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECC
Confidence 3455667789999986 5565555 68899999987766666642 345567788776454555555566778888888
Q ss_pred CCCeEEE
Q psy4900 473 GKNRFLI 479 (485)
Q Consensus 473 G~~r~~~ 479 (485)
+...+++
T Consensus 150 ~~~~~~~ 156 (383)
T 3ei3_B 150 GSVIQVF 156 (383)
T ss_dssp SCEEEEE
T ss_pred CCceEEE
Confidence 7554443
No 331
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=40.35 E-value=1.9e+02 Score=26.07 Aligned_cols=73 Identities=8% Similarity=-0.022 Sum_probs=43.7
Q ss_pred CCCccEEecCCCCeEEEeC-CCcEEEEEcCCCCcEEEEeCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEccCC
Q psy4900 401 TNPTDLALDPTSGLMFVAD-SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEGK 474 (485)
Q Consensus 401 ~~p~~iavD~~~~~lywtd-~~~I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG~ 474 (485)
....++++.+...+|+-.. ...|..-++........+.........|++.+....|+ +-+..+.|..-++...
T Consensus 56 ~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-sgs~D~~v~lWd~~~~ 129 (304)
T 2ynn_A 56 TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLTVKLWNWENN 129 (304)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEE-EEETTSCEEEEEGGGT
T ss_pred CcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEE-EECCCCeEEEEECCCC
Confidence 3345677777766666555 56777777764443334444455677888887666554 3334566666665543
No 332
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=39.73 E-value=2.2e+02 Score=27.45 Aligned_cols=106 Identities=9% Similarity=-0.009 Sum_probs=61.9
Q ss_pred ccccC---CCCccCCCCC-CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC-CCcEEEEEcCCCCcEEE
Q psy4900 362 TWKCD---SENDCGDGSD-EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD-SNQILRTNMDGTMAMSI 436 (485)
Q Consensus 362 ~~~~~---~~~~y~~d~~-~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd-~~~I~r~~~dG~~~~~i 436 (485)
.|.++ +..++....+ .|.+.++.+ +.....++......+.+|++. ...+|+... ...|...++........
T Consensus 202 ~~sp~~~~~~~l~s~~~d~~i~vwd~~~---~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~ 277 (450)
T 2vdu_B 202 HLIKDSDGHQFIITSDRDEHIKISHYPQ---CFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLST 277 (450)
T ss_dssp EEEECTTSCEEEEEEETTSCEEEEEESC---TTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEE
T ss_pred EEcCCCCCCcEEEEEcCCCcEEEEECCC---CceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeee
Confidence 34555 3333333333 566556541 333444444455667788888 555666555 67788888775443333
Q ss_pred EeC-------------------------CCcccceEEEeCCCCeEEEEeCCCCcEEEEEc
Q psy4900 437 VSE-------------------------AAYKASGVALDINAKRLFWCDNLLDYIETVDY 471 (485)
Q Consensus 437 ~~~-------------------------~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~ 471 (485)
+.. .-....+|++.+..+.||.+-...+.|...++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 278 FDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp EECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred ecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 321 01234577877778888888766788888887
No 333
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Probab=39.24 E-value=18 Score=36.06 Aligned_cols=22 Identities=41% Similarity=0.881 Sum_probs=15.5
Q ss_pred ccccCCCCCCeeeCCCCceeeCCCCCCC
Q psy4900 186 FTCQASPTGGVCQCPEGQKVANDSRTCL 213 (485)
Q Consensus 186 ~~C~n~~~~~~C~C~~G~~l~~~~~~C~ 213 (485)
..|.+ ++|+|.|++||. +..|.
T Consensus 209 G~C~~--~~g~C~C~~G~~----G~~Ce 230 (423)
T 2gy5_A 209 GVCHE--DTGECICPPGFM----GRTCE 230 (423)
T ss_dssp CEECT--TTCCEECCTTEE----STTSC
T ss_pred CEEEC--CCCcEeCCCCcc----CCCcc
Confidence 35655 468999999995 44564
No 334
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=38.97 E-value=32 Score=36.17 Aligned_cols=108 Identities=9% Similarity=0.114 Sum_probs=68.7
Q ss_pred cccccCCCCccCCCCCCccccccCcccccceEEEEecCCC---CCCccEEecCCCCeEEEeCC----------CcEEEEE
Q psy4900 361 STWKCDSENDCGDGSDEGDFCSEKTCAYFQFHAIVLGSNL---TNPTDLALDPTSGLMFVADS----------NQILRTN 427 (485)
Q Consensus 361 ~~~~~~~~~~y~~d~~~I~~~~~~~c~~g~~~~~l~~~~~---~~p~~iavD~~~~~lywtd~----------~~I~r~~ 427 (485)
..|.+++.-++-...+.|.+.+.. +.....++.... ....++++.|...+|+++.. ..|+..+
T Consensus 21 ~~~s~dg~~~~~~~d~~i~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d 96 (719)
T 1z68_A 21 PNWISGQEYLHQSADNNIVLYNIE----TGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD 96 (719)
T ss_dssp CEESSSSEEEEECTTSCEEEEESS----SCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred cEECCCCeEEEEcCCCCEEEEEcC----CCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence 457777743443333377777777 555555553221 13678999998888887752 6788888
Q ss_pred cCCCCc---EEEEeCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEccCCCeEE
Q psy4900 428 MDGTMA---MSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEGKNRFL 478 (485)
Q Consensus 428 ~dG~~~---~~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG~~r~~ 478 (485)
+++... +.| ......+++.+..++|.++. .+.|.+.++.+...+.
T Consensus 97 ~~~g~~~~~~~l----~~~~~~~~~SPDG~~la~~~--~~~i~~~~~~~g~~~~ 144 (719)
T 1z68_A 97 LSNGEFVRGNEL----PRPIQYLCWSPVGSKLAYVY--QNNIYLKQRPGDPPFQ 144 (719)
T ss_dssp TTTTEECCSSCC----CSSBCCEEECSSTTCEEEEE--TTEEEEESSTTSCCEE
T ss_pred CCCCccccceec----CcccccceECCCCCEEEEEE--CCeEEEEeCCCCCcEE
Confidence 886643 222 13456788888888888774 4578888876654443
No 335
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=38.90 E-value=2.3e+02 Score=26.00 Aligned_cols=100 Identities=7% Similarity=-0.006 Sum_probs=52.8
Q ss_pred CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC-CCcEEEEEcCCCCcEEEEeC-C-CcccceEEEeCCC
Q psy4900 377 EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD-SNQILRTNMDGTMAMSIVSE-A-AYKASGVALDINA 453 (485)
Q Consensus 377 ~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd-~~~I~r~~~dG~~~~~i~~~-~-~~~p~glavD~~~ 453 (485)
.|.+.++.+ +....+ +......+.+|++.|...+|+-.. ...|..-++........+.. . ......|++.+..
T Consensus 207 ~v~~wd~~~---~~~~~~-~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g 282 (340)
T 1got_B 207 SAKLWDVRE---GMCRQT-FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282 (340)
T ss_dssp CEEEEETTT---CSEEEE-ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTS
T ss_pred cEEEEECCC---CeeEEE-EcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCC
Confidence 455555541 333333 334455677899999766655444 66777777765432222221 1 1235677777655
Q ss_pred CeEEEEeCCCCcEEEEEccCCCeEEEec
Q psy4900 454 KRLFWCDNLLDYIETVDYEGKNRFLILR 481 (485)
Q Consensus 454 ~~lYW~D~~~~~I~~~~~dG~~r~~~~~ 481 (485)
..|.-. ...+.|..-++....+...+.
T Consensus 283 ~~l~~g-~~d~~i~vwd~~~~~~~~~~~ 309 (340)
T 1got_B 283 RLLLAG-YDDFNCNVWDALKADRAGVLA 309 (340)
T ss_dssp SEEEEE-ETTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEE-CCCCeEEEEEcccCcEeeEee
Confidence 555443 344566666655444333333
No 336
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Probab=35.39 E-value=11 Score=25.52 Aligned_cols=17 Identities=41% Similarity=1.120 Sum_probs=14.2
Q ss_pred CCccccCCCCccccCCCCCCC
Q psy4900 283 LGYKCACDIGYRLSVNGNNCN 303 (485)
Q Consensus 283 g~~~C~C~~Gy~l~~d~~~C~ 303 (485)
++|.|.|+.||. +..|.
T Consensus 27 ~~~~C~C~~Gyt----G~~Ce 43 (53)
T 1nql_B 27 DKYACNCVVGYI----GERCQ 43 (53)
T ss_dssp TEEEEEECTTEE----STTSC
T ss_pred CCEEEecCCCCc----CCCCC
Confidence 789999999995 66664
No 337
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=34.79 E-value=2.3e+02 Score=26.27 Aligned_cols=75 Identities=11% Similarity=0.053 Sum_probs=45.6
Q ss_pred CCCCCccEEecCCCCeEEEeC-CCcEEEEEcCCCCcEEEEe------CC---------------CcccceEEEeCCCC--
Q psy4900 399 NLTNPTDLALDPTSGLMFVAD-SNQILRTNMDGTMAMSIVS------EA---------------AYKASGVALDINAK-- 454 (485)
Q Consensus 399 ~~~~p~~iavD~~~~~lywtd-~~~I~r~~~dG~~~~~i~~------~~---------------~~~p~glavD~~~~-- 454 (485)
.-..+.+|++.|...+|+-.. ...|...++........+. .. ...+.+|++.+..+
T Consensus 290 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~ 369 (397)
T 1sq9_A 290 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRS 369 (397)
T ss_dssp BSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSB
T ss_pred cCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccc
Confidence 344567789988776666655 6778888886554444443 22 34566788776552
Q ss_pred -------eEEEEeCCCCcEEEEEccC
Q psy4900 455 -------RLFWCDNLLDYIETVDYEG 473 (485)
Q Consensus 455 -------~lYW~D~~~~~I~~~~~dG 473 (485)
+++.+-...+.|..-++++
T Consensus 370 ~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 370 GMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp STTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred cccccccceEEEecCCCcEEEEEcCC
Confidence 3444444556666666553
No 338
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=33.44 E-value=2.2e+02 Score=28.41 Aligned_cols=70 Identities=9% Similarity=0.010 Sum_probs=44.0
Q ss_pred CCccEEecCC-CCeEEEeC-CCcEEEEEcCCCCcEEEE-e---CCCcccceEEEeCCCCeEEEEeCCCCcEEEEEccC
Q psy4900 402 NPTDLALDPT-SGLMFVAD-SNQILRTNMDGTMAMSIV-S---EAAYKASGVALDINAKRLFWCDNLLDYIETVDYEG 473 (485)
Q Consensus 402 ~p~~iavD~~-~~~lywtd-~~~I~r~~~dG~~~~~i~-~---~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG 473 (485)
....|++.|. ..+|+-.. ...|...++........+ . .......+|++. .++++.+-...+.|...++..
T Consensus 208 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~ 283 (615)
T 1pgu_A 208 FVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL--DSQKFATVGADATIRVWDVTT 283 (615)
T ss_dssp CEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES--SSSEEEEEETTSEEEEEETTT
T ss_pred eEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc--CCCEEEEEcCCCcEEEEECCC
Confidence 5678999998 55566554 678888887654433333 2 334456677877 444445545567777777763
No 339
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=33.28 E-value=1.6e+02 Score=26.96 Aligned_cols=92 Identities=9% Similarity=0.095 Sum_probs=55.5
Q ss_pred CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEe-C-CCcEEEEEcCCCCcEEEE---eCCCcccceEEEeC
Q psy4900 377 EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVA-D-SNQILRTNMDGTMAMSIV---SEAAYKASGVALDI 451 (485)
Q Consensus 377 ~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywt-d-~~~I~r~~~dG~~~~~i~---~~~~~~p~glavD~ 451 (485)
.|.+.++.+ +..... +........+|++.|..+.++.+ . ...|...++........+ ......+..|++++
T Consensus 96 ~i~v~d~~~---~~~~~~-~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (366)
T 3k26_A 96 IIRIINPIT---MQCIKH-YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL 171 (366)
T ss_dssp EEEEECTTT---CCEEEE-EESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT
T ss_pred EEEEEEchh---ceEeee-ecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC
Confidence 455555441 333333 33455667889999944444444 3 678888888755444444 23445678888887
Q ss_pred CCCeEEEEeCCCCcEEEEEccC
Q psy4900 452 NAKRLFWCDNLLDYIETVDYEG 473 (485)
Q Consensus 452 ~~~~lYW~D~~~~~I~~~~~dG 473 (485)
..+.|+-+. ..+.|...++..
T Consensus 172 ~~~~l~~~~-~dg~i~i~d~~~ 192 (366)
T 3k26_A 172 LGEKIMSCG-MDHSLKLWRINS 192 (366)
T ss_dssp TSSEEEEEE-TTSCEEEEESCS
T ss_pred CCCEEEEec-CCCCEEEEECCC
Confidence 666666554 456777777663
No 340
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=33.15 E-value=2.9e+02 Score=30.87 Aligned_cols=80 Identities=6% Similarity=0.008 Sum_probs=46.4
Q ss_pred ecCCCCCCccEEecCCCCeEEEeC-CCcEEEEEcCCCCcEEEEeCCCcccceEEEeCCCC-eEEEEeCCCCcEEEEEccC
Q psy4900 396 LGSNLTNPTDLALDPTSGLMFVAD-SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAK-RLFWCDNLLDYIETVDYEG 473 (485)
Q Consensus 396 ~~~~~~~p~~iavD~~~~~lywtd-~~~I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~-~lYW~D~~~~~I~~~~~dG 473 (485)
+........+|++.|...+|.-.. .+.|..-++........+.........+++.+..+ .+..+-...+.|..-++..
T Consensus 653 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~ 732 (1249)
T 3sfz_A 653 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ 732 (1249)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTS
T ss_pred eccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCC
Confidence 334556677899998877776655 67788777775443334444444566677655322 2333333445566666554
Q ss_pred CC
Q psy4900 474 KN 475 (485)
Q Consensus 474 ~~ 475 (485)
..
T Consensus 733 ~~ 734 (1249)
T 3sfz_A 733 KE 734 (1249)
T ss_dssp SS
T ss_pred cc
Confidence 44
No 341
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=32.82 E-value=3.3e+02 Score=25.90 Aligned_cols=54 Identities=4% Similarity=-0.095 Sum_probs=26.7
Q ss_pred CCCCCCccEEecCCCCeEEEeC-CCcEEEEEcCCCCcEEEEeCCCcccceEEEeC
Q psy4900 398 SNLTNPTDLALDPTSGLMFVAD-SNQILRTNMDGTMAMSIVSEAAYKASGVALDI 451 (485)
Q Consensus 398 ~~~~~p~~iavD~~~~~lywtd-~~~I~r~~~dG~~~~~i~~~~~~~p~glavD~ 451 (485)
........+++.+...+|+-.. .+.|..-++........+.........|++.+
T Consensus 232 ~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~ 286 (410)
T 1vyh_C 232 GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP 286 (410)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECC
T ss_pred CCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcC
Confidence 3344456677776644443333 56666666654443333333333344555543
No 342
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=32.75 E-value=2.9e+02 Score=25.58 Aligned_cols=75 Identities=12% Similarity=0.104 Sum_probs=42.8
Q ss_pred CCCCCccEEecCC-CCeEEEeC--CCcEEEEEcCCCCcEEEEeCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEccCC
Q psy4900 399 NLTNPTDLALDPT-SGLMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEGK 474 (485)
Q Consensus 399 ~~~~p~~iavD~~-~~~lywtd--~~~I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG~ 474 (485)
.......+++.|. .+.++++- ...|..-++........+........+|++.+....|+ +-...+.|..-++...
T Consensus 195 h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~-s~s~D~~v~lwd~~~~ 272 (354)
T 2pbi_B 195 HGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFA-SGSDDATCRLYDLRAD 272 (354)
T ss_dssp CSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE-EEETTSCEEEEETTTT
T ss_pred CCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEE-EEeCCCeEEEEECCCC
Confidence 3444556777765 34455544 67788888765443334433445567888876555444 3334556666665543
No 343
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=32.67 E-value=44 Score=35.22 Aligned_cols=97 Identities=6% Similarity=-0.046 Sum_probs=54.2
Q ss_pred CccccccCcccccce---EEEEecCC-CCCCccEEecCCCCeEEEeC----CCcEEEEEcCCCCcEEEEeCCCcccceEE
Q psy4900 377 EGDFCSEKTCAYFQF---HAIVLGSN-LTNPTDLALDPTSGLMFVAD----SNQILRTNMDGTMAMSIVSEAAYKASGVA 448 (485)
Q Consensus 377 ~I~~~~~~~c~~g~~---~~~l~~~~-~~~p~~iavD~~~~~lywtd----~~~I~r~~~dG~~~~~i~~~~~~~p~gla 448 (485)
.|.+.+++ +.. -..|+... -....++++. .+.|+++- ..+|+..+++|...+.|.........+++
T Consensus 296 ~l~~~d~~----~~~~~~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~ 369 (695)
T 2bkl_A 296 RVFEVDPA----KPARASWKEIVPEDSSASLLSVSIV--GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLM 369 (695)
T ss_dssp EEEEEBTT----BCSGGGCEEEECCCSSCEEEEEEEE--TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCB
T ss_pred EEEEEeCC----CCCccCCeEEecCCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEee
Confidence 56666665 332 14555332 2223445665 67787776 35788888887654444322233445566
Q ss_pred EeCCCCeEEEEeCC---CCcEEEEEccCCCeEEE
Q psy4900 449 LDINAKRLFWCDNL---LDYIETVDYEGKNRFLI 479 (485)
Q Consensus 449 vD~~~~~lYW~D~~---~~~I~~~~~dG~~r~~~ 479 (485)
+++..+.|+.+-+. -+.|+..++.+...+++
T Consensus 370 ~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l 403 (695)
T 2bkl_A 370 GLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELW 403 (695)
T ss_dssp SCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred cCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence 66555666644322 25788888876665544
No 344
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=32.64 E-value=85 Score=29.33 Aligned_cols=108 Identities=9% Similarity=0.013 Sum_probs=51.6
Q ss_pred ccccCCCCccCCCCC-CccccccCcccccc--eEEEEecCCCCCCccEEecCCCCeEEEeC-CCcEEEEEcCCCC---cE
Q psy4900 362 TWKCDSENDCGDGSD-EGDFCSEKTCAYFQ--FHAIVLGSNLTNPTDLALDPTSGLMFVAD-SNQILRTNMDGTM---AM 434 (485)
Q Consensus 362 ~~~~~~~~~y~~d~~-~I~~~~~~~c~~g~--~~~~l~~~~~~~p~~iavD~~~~~lywtd-~~~I~r~~~dG~~---~~ 434 (485)
.+.+++..+.....+ .|.+.++. .. .....+........+|++.|...+|+-.. ...|..-++.... ..
T Consensus 18 ~~s~~g~~l~~~~~d~~i~iw~~~----~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~ 93 (377)
T 3dwl_C 18 AFNSQRTEFVTTTATNQVELYEQD----GNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQT 93 (377)
T ss_dssp EECSSSSEEECCCSSSCBCEEEEE----TTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCE
T ss_pred EECCCCCEEEEecCCCEEEEEEcc----CCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeee
Confidence 344554444443333 56666655 33 22222223344567788888766666555 5667776666543 22
Q ss_pred EEEeCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEccCC
Q psy4900 435 SIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEGK 474 (485)
Q Consensus 435 ~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG~ 474 (485)
..+.........|++.+..+.|+-.. ..+.|...+++..
T Consensus 94 ~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~ 132 (377)
T 3dwl_C 94 LVLLRLNRAATFVRWSPNEDKFAVGS-GARVISVCYFEQE 132 (377)
T ss_dssp EECCCCSSCEEEEECCTTSSCCEEEE-SSSCEEECCC---
T ss_pred eEecccCCceEEEEECCCCCEEEEEe-cCCeEEEEEECCc
Confidence 22223334456677666555555443 3455655555543
No 345
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=32.56 E-value=2.3e+02 Score=26.66 Aligned_cols=77 Identities=10% Similarity=0.066 Sum_probs=45.4
Q ss_pred CCCCCccEEecC-CCCeEEEeC-CCcEEEEEcCCC-------CcEEEEeCCCcccceEEEeCCCCeEEEEeCCCCcEEEE
Q psy4900 399 NLTNPTDLALDP-TSGLMFVAD-SNQILRTNMDGT-------MAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETV 469 (485)
Q Consensus 399 ~~~~p~~iavD~-~~~~lywtd-~~~I~r~~~dG~-------~~~~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~ 469 (485)
......+|++.| ...+|+-.. ...|..-++... .....+......+..|++.+..++++.+-...+.|..-
T Consensus 80 h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 159 (402)
T 2aq5_A 80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVW 159 (402)
T ss_dssp CSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEE
T ss_pred CCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEE
Confidence 344566788888 444444443 566777777643 22223333445667788777665566665556777777
Q ss_pred EccCCC
Q psy4900 470 DYEGKN 475 (485)
Q Consensus 470 ~~dG~~ 475 (485)
++....
T Consensus 160 d~~~~~ 165 (402)
T 2aq5_A 160 DVGTGA 165 (402)
T ss_dssp ETTTTE
T ss_pred ECCCCC
Confidence 766443
No 346
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=31.46 E-value=1.6e+02 Score=31.30 Aligned_cols=19 Identities=42% Similarity=1.142 Sum_probs=13.6
Q ss_pred ccccC-CCCccccCCCCCCCC-CCC
Q psy4900 285 YKCAC-DIGYRLSVNGNNCNQ-PTC 307 (485)
Q Consensus 285 ~~C~C-~~Gy~l~~d~~~C~~-~~C 307 (485)
.+|.| ++||. +..|.. +.|
T Consensus 584 g~C~C~~~Gy~----G~~Ce~C~~C 604 (690)
T 3fcs_B 584 GSCVCIQPGSY----GDTCEKCPTC 604 (690)
T ss_dssp TEEECCSTTCB----STTSCBCTTS
T ss_pred CEEECCCCCcc----CCCcCcCCCC
Confidence 38999 99995 667765 444
No 347
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=30.64 E-value=80 Score=28.97 Aligned_cols=92 Identities=9% Similarity=-0.029 Sum_probs=53.3
Q ss_pred CccccccCcccccceEEEEecCCCCCCccEEecC---CCCeEEEeC-CCcEEEEEcCCCCc-EEE----EeCCCcccceE
Q psy4900 377 EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDP---TSGLMFVAD-SNQILRTNMDGTMA-MSI----VSEAAYKASGV 447 (485)
Q Consensus 377 ~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~---~~~~lywtd-~~~I~r~~~dG~~~-~~i----~~~~~~~p~gl 447 (485)
.|.+.++. ........ .....+.+|++.| ...+|+-.. .+.|...++..... ..+ +.........|
T Consensus 191 ~i~i~d~~----~~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~ 265 (357)
T 3i2n_A 191 DIKLFDLR----NMALRWET-NIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQV 265 (357)
T ss_dssp EEEEEETT----TTEEEEEE-ECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEE
T ss_pred eEEEEECc----cCceeeec-CCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEE
Confidence 55555555 33332222 3345577899998 555555554 56676666653221 111 12344567788
Q ss_pred EEeCCCCeEEEEeCCCCcEEEEEccC
Q psy4900 448 ALDINAKRLFWCDNLLDYIETVDYEG 473 (485)
Q Consensus 448 avD~~~~~lYW~D~~~~~I~~~~~dG 473 (485)
++.+..+.++.+-...+.|..-++..
T Consensus 266 ~~~~~~~~~l~~~~~dg~i~iwd~~~ 291 (357)
T 3i2n_A 266 RHLPQNRELFLTAGGAGGLHLWKYEY 291 (357)
T ss_dssp EEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred EECCCCCcEEEEEeCCCcEEEeecCC
Confidence 88876665777766677787777763
No 348
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=30.39 E-value=2.5e+02 Score=25.24 Aligned_cols=31 Identities=10% Similarity=0.209 Sum_probs=13.6
Q ss_pred cceEEEeCCCCeEEEEeCCCCcEEEEEccCCCe
Q psy4900 444 ASGVALDINAKRLFWCDNLLDYIETVDYEGKNR 476 (485)
Q Consensus 444 p~glavD~~~~~lYW~D~~~~~I~~~~~dG~~r 476 (485)
+.++++|. .++||... ..+.|.+.+.+|...
T Consensus 217 ~~~~~~~~-~g~l~v~t-~~~gl~~~~~~g~~~ 247 (330)
T 3hxj_A 217 VTRPAISE-DGTIYVTS-LDGHLYAINPDGTEK 247 (330)
T ss_dssp CSCCEECT-TSCEEEEE-TTTEEEEECTTSCEE
T ss_pred eeceEECC-CCeEEEEc-CCCeEEEECCCCCEe
Confidence 44555542 23443332 245555554444433
No 349
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=30.10 E-value=1.2e+02 Score=32.45 Aligned_cols=107 Identities=6% Similarity=-0.082 Sum_probs=60.5
Q ss_pred cccccCCCCccCCCCC------CccccccCcccccce--EEEEecC-CCCCCccEEecCCCCeEEEeC----CCcEEEEE
Q psy4900 361 STWKCDSENDCGDGSD------EGDFCSEKTCAYFQF--HAIVLGS-NLTNPTDLALDPTSGLMFVAD----SNQILRTN 427 (485)
Q Consensus 361 ~~~~~~~~~~y~~d~~------~I~~~~~~~c~~g~~--~~~l~~~-~~~~p~~iavD~~~~~lywtd----~~~I~r~~ 427 (485)
..|.+++..+|++..+ .|.+.++. +.. ...+... .-..-.++++.|..++|+|+. ...|+.++
T Consensus 226 ~~WspDg~~l~y~~~d~~~~~~~v~~~~lg----t~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d 301 (751)
T 2xe4_A 226 IVWGPDHTSLFYVTKDETLRENKVWRHVMG----KLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLD 301 (751)
T ss_dssp CEECSSTTEEEEEEECTTCCEEEEEEEETT----SCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEE
T ss_pred EEEecCCCEEEEEEECCCCCCCEEEEEECC----CCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEE
Confidence 4577888777765332 45555655 332 1223221 111223566777778888876 46788899
Q ss_pred cCCCC--c--EEEEeCCCcccceEEEe-CCCCeEEEEeC----CCCcEEEEEccC
Q psy4900 428 MDGTM--A--MSIVSEAAYKASGVALD-INAKRLFWCDN----LLDYIETVDYEG 473 (485)
Q Consensus 428 ~dG~~--~--~~i~~~~~~~p~glavD-~~~~~lYW~D~----~~~~I~~~~~dG 473 (485)
+++.. . +.|+. ....+ -..+| ...++|||+-. ...+|.++++++
T Consensus 302 ~~~~~~~~~~~~l~~-~~~~~-~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 302 LRKGNAHNTLEIVRP-REKGV-RYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp SSSCTTCCCEEESSC-CCTTC-CEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred CCCCCCCceeEEeec-CCCCc-eEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 88652 2 33332 21222 23455 45778887743 235899998884
No 350
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=30.04 E-value=98 Score=29.15 Aligned_cols=106 Identities=13% Similarity=0.047 Sum_probs=56.9
Q ss_pred ccccCCCCccCCC-CC-CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC--CCcEEEEEcCCCCcEEEE
Q psy4900 362 TWKCDSENDCGDG-SD-EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTMAMSIV 437 (485)
Q Consensus 362 ~~~~~~~~~y~~d-~~-~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~~~~i~ 437 (485)
.+.|++++++.+. .+ .|.+.++.+ +....++ ........+|++.|..+++..+- ...|..-+++......++
T Consensus 233 ~~sp~~~~~la~g~~d~~i~~wd~~~---~~~~~~~-~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~ 308 (357)
T 4g56_B 233 TWHPEKDDTFACGDETGNVSLVNIKN---PDSAQTS-AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL 308 (357)
T ss_dssp EECTTSTTEEEEEESSSCEEEEESSC---GGGCEEE-CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred hhhhcccceEEEeecccceeEEECCC---CcEeEEE-eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC
Confidence 3445544444332 12 455555441 3333333 23344567788888765544332 567777766643322222
Q ss_pred eCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEcc
Q psy4900 438 SEAAYKASGVALDINAKRLFWCDNLLDYIETVDYE 472 (485)
Q Consensus 438 ~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~d 472 (485)
.......+||+.+..++++.+=...++|..-++.
T Consensus 309 -~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 309 -SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp -CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred -CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence 2234567888877666666665566777777664
No 351
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=29.94 E-value=2.4e+02 Score=25.59 Aligned_cols=80 Identities=11% Similarity=0.080 Sum_probs=48.7
Q ss_pred ecCCCCCCccEEecCCC--CeEEEeC--CCcEEEEEcCC--CCcEEEEeCCCcccceEEEeCCCCeEEEEeCCCCcEEEE
Q psy4900 396 LGSNLTNPTDLALDPTS--GLMFVAD--SNQILRTNMDG--TMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETV 469 (485)
Q Consensus 396 ~~~~~~~p~~iavD~~~--~~lywtd--~~~I~r~~~dG--~~~~~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~ 469 (485)
+...-.....|++.|.. |.++.+- .+.|..-+++. ......+.........|++.+..+.|+-. ...+.|..-
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~dg~v~iw 113 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTA-SCDKTAKMW 113 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEE-ETTSEEEEE
T ss_pred ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEE-cCCCcEEEE
Confidence 33445567788999886 4555444 56777777774 32223444445567788887766666644 345667776
Q ss_pred EccCCCe
Q psy4900 470 DYEGKNR 476 (485)
Q Consensus 470 ~~dG~~r 476 (485)
+++....
T Consensus 114 d~~~~~~ 120 (368)
T 3mmy_A 114 DLSSNQA 120 (368)
T ss_dssp ETTTTEE
T ss_pred EcCCCCc
Confidence 7665543
No 352
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=29.64 E-value=2.5e+02 Score=26.63 Aligned_cols=97 Identities=7% Similarity=-0.001 Sum_probs=53.7
Q ss_pred CccccccCcccccceEEEEecC-CCCCCccEEecCCCCeEEEeC-CCcEEEEEcCCCCcEEEEe-CCCcccceEEEeCC-
Q psy4900 377 EGDFCSEKTCAYFQFHAIVLGS-NLTNPTDLALDPTSGLMFVAD-SNQILRTNMDGTMAMSIVS-EAAYKASGVALDIN- 452 (485)
Q Consensus 377 ~I~~~~~~~c~~g~~~~~l~~~-~~~~p~~iavD~~~~~lywtd-~~~I~r~~~dG~~~~~i~~-~~~~~p~glavD~~- 452 (485)
.|.+.++.+ +....++... ....+.+|++.|...+|+-.. .+.|..-++........+. ..-.....|++.+.
T Consensus 193 ~i~iwd~~~---~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 269 (437)
T 3gre_A 193 RVIIFDIRT---LERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFY 269 (437)
T ss_dssp EEEEEETTT---CCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTT
T ss_pred eEEEEeCCC---CeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEecccc
Confidence 455555541 3333333321 345678899998866666555 6778877776433222222 22234456655432
Q ss_pred --CCeEEEEeCCCCcEEEEEccCCCe
Q psy4900 453 --AKRLFWCDNLLDYIETVDYEGKNR 476 (485)
Q Consensus 453 --~~~lYW~D~~~~~I~~~~~dG~~r 476 (485)
.+++..+-...+.|..-++.....
T Consensus 270 s~~~~~l~s~~~dg~i~iwd~~~~~~ 295 (437)
T 3gre_A 270 GKNSVIVVGGSSKTFLTIWNFVKGHC 295 (437)
T ss_dssp CTTEEEEEEESTTEEEEEEETTTTEE
T ss_pred CCCccEEEEEcCCCcEEEEEcCCCcE
Confidence 344555555667788888874443
No 353
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=29.19 E-value=1.2e+02 Score=28.31 Aligned_cols=81 Identities=12% Similarity=0.131 Sum_probs=46.2
Q ss_pred EecCCCCCCccEEecC-CCCeEEEeC-CCcEEEEEcCCCCcEEEEe-------------CCCcccceEEEeCCCCeEEEE
Q psy4900 395 VLGSNLTNPTDLALDP-TSGLMFVAD-SNQILRTNMDGTMAMSIVS-------------EAAYKASGVALDINAKRLFWC 459 (485)
Q Consensus 395 l~~~~~~~p~~iavD~-~~~~lywtd-~~~I~r~~~dG~~~~~i~~-------------~~~~~p~glavD~~~~~lYW~ 459 (485)
++...-....+|++.| ...+|+-.. .+.|..-+++.......+. ........|++.+..++++.+
T Consensus 38 ~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 117 (408)
T 4a11_B 38 VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTS 117 (408)
T ss_dssp ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEE
T ss_pred eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEE
Confidence 3334555677899998 544444443 6778888887544322221 123345677776645555555
Q ss_pred eCCCCcEEEEEccCCC
Q psy4900 460 DNLLDYIETVDYEGKN 475 (485)
Q Consensus 460 D~~~~~I~~~~~dG~~ 475 (485)
-...+.|..-+++...
T Consensus 118 ~~~d~~i~iwd~~~~~ 133 (408)
T 4a11_B 118 SSFDKTLKVWDTNTLQ 133 (408)
T ss_dssp EETTSEEEEEETTTTE
T ss_pred EeCCCeEEEeeCCCCc
Confidence 4455666666666544
No 354
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=28.44 E-value=3.7e+02 Score=25.28 Aligned_cols=69 Identities=7% Similarity=0.037 Sum_probs=41.3
Q ss_pred CccEEecCCCCeEEEeC-CCcEEEEEcCCCCcEEEEeCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEcc
Q psy4900 403 PTDLALDPTSGLMFVAD-SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYE 472 (485)
Q Consensus 403 p~~iavD~~~~~lywtd-~~~I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~d 472 (485)
.++|++.|...+|+-.. ...|..-++........+.........|++.+...+|+=. ...+.|..-++.
T Consensus 126 v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~-s~d~~v~iwd~~ 195 (393)
T 1erj_A 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSG-SGDRTVRIWDLR 195 (393)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE-ETTSEEEEEETT
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEe-cCCCcEEEEECC
Confidence 45788888766666555 6777777777554444444444556677777666655433 334455555544
No 355
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=27.10 E-value=2.7e+02 Score=25.73 Aligned_cols=72 Identities=10% Similarity=0.069 Sum_probs=45.5
Q ss_pred CCCccEEecCCCC---eEEEeC-CCcEEEEEcCCCCcEEEEeCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEcc
Q psy4900 401 TNPTDLALDPTSG---LMFVAD-SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYE 472 (485)
Q Consensus 401 ~~p~~iavD~~~~---~lywtd-~~~I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~d 472 (485)
.....+++.+... +|+-.. .+.|...++........+.........|++.+...+|+.+-...+.|...++.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~ 217 (408)
T 4a11_B 142 ETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217 (408)
T ss_dssp SCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred CceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECC
Confidence 3445667766433 444444 67888888875544444444455677888887777666665566777777764
No 356
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=26.21 E-value=2.4e+02 Score=26.45 Aligned_cols=74 Identities=9% Similarity=0.099 Sum_probs=46.5
Q ss_pred CCCccEEecCCCCeEEEeC-CCcEEEEEcCCCCcEEEEeC-CCcccceEEEeCCCCeEEEEeCCCCcEEEEEccCC
Q psy4900 401 TNPTDLALDPTSGLMFVAD-SNQILRTNMDGTMAMSIVSE-AAYKASGVALDINAKRLFWCDNLLDYIETVDYEGK 474 (485)
Q Consensus 401 ~~p~~iavD~~~~~lywtd-~~~I~r~~~dG~~~~~i~~~-~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG~ 474 (485)
....+|++.|...+|+-.. .+.|...++........+.. ....+..|++.+..+.++.+-...+.|...++...
T Consensus 248 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 323 (420)
T 3vl1_A 248 SKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSP 323 (420)
T ss_dssp CCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT
T ss_pred CcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCC
Confidence 3455667777655665555 67788888765543333322 34457788888777745555556678888888654
No 357
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=25.97 E-value=3.8e+02 Score=24.46 Aligned_cols=77 Identities=9% Similarity=0.042 Sum_probs=46.3
Q ss_pred ecCCCCCCccEEecCCCCeEEEeC-CCcEEEEEcCCCCcEEEEeCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEccC
Q psy4900 396 LGSNLTNPTDLALDPTSGLMFVAD-SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEG 473 (485)
Q Consensus 396 ~~~~~~~p~~iavD~~~~~lywtd-~~~I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG 473 (485)
+........+|++.|...+|+-.. .+.|..-++........+......+.+|++.+..+.|.-. ...+.|..-++..
T Consensus 180 ~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~-s~d~~v~iwd~~~ 257 (340)
T 1got_B 180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG-SDDATCRLFDLRA 257 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTT
T ss_pred EcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEE-cCCCcEEEEECCC
Confidence 334455677889998755544433 6777777776544444444444557788888765554433 3455666666654
No 358
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=25.45 E-value=3.8e+02 Score=24.24 Aligned_cols=70 Identities=9% Similarity=0.022 Sum_probs=37.6
Q ss_pred CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC-CCcEEEEEcCCCCcEEEEeCCCcccceEEEeC
Q psy4900 377 EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD-SNQILRTNMDGTMAMSIVSEAAYKASGVALDI 451 (485)
Q Consensus 377 ~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd-~~~I~r~~~dG~~~~~i~~~~~~~p~glavD~ 451 (485)
.|.+-++.+ +.....+ ........+|++.|...+|+=.. ...|..-++.+....++. ........+++.+
T Consensus 88 ~v~~wd~~~---~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~-~h~~~v~~~~~~~ 158 (319)
T 3frx_A 88 TLRLWDVAT---GETYQRF-VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLL-GHNDWVSQVRVVP 158 (319)
T ss_dssp EEEEEETTT---TEEEEEE-ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEEC-CCSSCEEEEEECC
T ss_pred EEEEEECCC---CCeeEEE-ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEe-ccCCcEEEEEEcc
Confidence 455555441 3333333 34455677889988766555444 667777777765444333 2223344555443
No 359
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=25.40 E-value=3.8e+02 Score=24.27 Aligned_cols=77 Identities=6% Similarity=-0.033 Sum_probs=44.4
Q ss_pred CCCCCCccEEecCC-------------CCeEEEeC-CCcEEEEEcCCCCcE-EEE---eCCCcccceEEEeCCC--CeEE
Q psy4900 398 SNLTNPTDLALDPT-------------SGLMFVAD-SNQILRTNMDGTMAM-SIV---SEAAYKASGVALDINA--KRLF 457 (485)
Q Consensus 398 ~~~~~p~~iavD~~-------------~~~lywtd-~~~I~r~~~dG~~~~-~i~---~~~~~~p~glavD~~~--~~lY 457 (485)
........|++.|. ..+|+-.. ...|...++...... .++ .........|++.+.. +++.
T Consensus 145 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l 224 (379)
T 3jrp_A 145 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYL 224 (379)
T ss_dssp CCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEE
T ss_pred CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeE
Confidence 44555677888884 33444433 677777777644322 222 2234456788888773 4444
Q ss_pred EEeCCCCcEEEEEccCC
Q psy4900 458 WCDNLLDYIETVDYEGK 474 (485)
Q Consensus 458 W~D~~~~~I~~~~~dG~ 474 (485)
.+-...+.|...++...
T Consensus 225 ~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 225 ASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp EEEETTSCEEEEEESST
T ss_pred EEEeCCCEEEEEeCCCC
Confidence 44445667777777654
No 360
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=25.37 E-value=3.5e+02 Score=23.89 Aligned_cols=79 Identities=6% Similarity=-0.032 Sum_probs=47.9
Q ss_pred ecCCCCCCccEEecCCCCeEEEeC-CCcEEEEEcCCCC-cEEE---EeCCCcccceEEEeCC-CCeEEEEeCCCCcEEEE
Q psy4900 396 LGSNLTNPTDLALDPTSGLMFVAD-SNQILRTNMDGTM-AMSI---VSEAAYKASGVALDIN-AKRLFWCDNLLDYIETV 469 (485)
Q Consensus 396 ~~~~~~~p~~iavD~~~~~lywtd-~~~I~r~~~dG~~-~~~i---~~~~~~~p~glavD~~-~~~lYW~D~~~~~I~~~ 469 (485)
+.........|++.|...+|+-.. .+.|..-+++... ...+ +.........|++.+. .++++.+-...+.|..-
T Consensus 7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vw 86 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLW 86 (351)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEE
Confidence 344556678899999766666555 5777777777432 1122 2233445667777654 24445554556777777
Q ss_pred EccCC
Q psy4900 470 DYEGK 474 (485)
Q Consensus 470 ~~dG~ 474 (485)
+++..
T Consensus 87 d~~~~ 91 (351)
T 3f3f_A 87 EEDPD 91 (351)
T ss_dssp EECTT
T ss_pred ecCCC
Confidence 77654
No 361
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=24.93 E-value=2.7e+02 Score=27.06 Aligned_cols=78 Identities=12% Similarity=0.011 Sum_probs=48.5
Q ss_pred CCCCccEEecCCCCeEEEeC--CCcEEEEEcCCCCcEEEEeCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEccCCCeE
Q psy4900 400 LTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEGKNRF 477 (485)
Q Consensus 400 ~~~p~~iavD~~~~~lywtd--~~~I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG~~r~ 477 (485)
-..+.+|++.|..+.++.+- .+.|..-++...............+..|+..+..+.|+-.. ..+.|...++.|..++
T Consensus 149 ~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs-~dg~v~iwd~~~~~~~ 227 (434)
T 2oit_A 149 GGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGK-QNGTVVQYLPTLQEKK 227 (434)
T ss_dssp GGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEE-TTSCEEEECTTCCEEE
T ss_pred CCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEc-CCCcEEEEccCCcccc
Confidence 45577899999866666654 67777777765422211222234577888887766666544 5567777777755444
Q ss_pred E
Q psy4900 478 L 478 (485)
Q Consensus 478 ~ 478 (485)
+
T Consensus 228 ~ 228 (434)
T 2oit_A 228 V 228 (434)
T ss_dssp E
T ss_pred c
Confidence 3
No 362
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=24.36 E-value=2.5e+02 Score=27.91 Aligned_cols=72 Identities=13% Similarity=0.084 Sum_probs=51.0
Q ss_pred CCCCccEEecCCCCeEEEeCCCcEEEEEcCCC----CcEEEEeCCCcc-cceEEEeC--CCCeEEEEeCCCCcEEEEEcc
Q psy4900 400 LTNPTDLALDPTSGLMFVADSNQILRTNMDGT----MAMSIVSEAAYK-ASGVALDI--NAKRLFWCDNLLDYIETVDYE 472 (485)
Q Consensus 400 ~~~p~~iavD~~~~~lywtd~~~I~r~~~dG~----~~~~i~~~~~~~-p~glavD~--~~~~lYW~D~~~~~I~~~~~d 472 (485)
...+.+|++.|...+|+......|...+++.. .....+...... +..|++.+ ..+.|+-.. ..+.|..-++.
T Consensus 18 ~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~-~dg~v~vw~~~ 96 (615)
T 1pgu_A 18 RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGD-ESGKVIVWGWT 96 (615)
T ss_dssp TTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEE-TTSEEEEEEEE
T ss_pred cCceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEec-CCCEEEEEeCC
Confidence 45577899999988888887778888888744 445555445556 78999988 566665544 45677777773
No 363
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=24.19 E-value=3.9e+02 Score=23.91 Aligned_cols=77 Identities=12% Similarity=0.072 Sum_probs=46.4
Q ss_pred CCCCCccEEecC-CCCeEEEeC-CCcEEEEEcCCC------CcEEEEeCCC---------cccceEEEeCCCCeEEEEeC
Q psy4900 399 NLTNPTDLALDP-TSGLMFVAD-SNQILRTNMDGT------MAMSIVSEAA---------YKASGVALDINAKRLFWCDN 461 (485)
Q Consensus 399 ~~~~p~~iavD~-~~~~lywtd-~~~I~r~~~dG~------~~~~i~~~~~---------~~p~glavD~~~~~lYW~D~ 461 (485)
.-..+.+|++.| ...+|+-.. .+.|....++.. .....+.... ..+..|++.+..+.|+-..
T Consensus 192 ~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~- 270 (342)
T 1yfq_A 192 LKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG- 270 (342)
T ss_dssp CSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEE-
T ss_pred CCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEec-
Confidence 344567889988 655555444 567776666643 3333333322 2677888887666666544
Q ss_pred CCCcEEEEEccCCCe
Q psy4900 462 LLDYIETVDYEGKNR 476 (485)
Q Consensus 462 ~~~~I~~~~~dG~~r 476 (485)
..+.|...++.....
T Consensus 271 ~dg~i~vwd~~~~~~ 285 (342)
T 1yfq_A 271 SDGIISCWNLQTRKK 285 (342)
T ss_dssp TTSCEEEEETTTTEE
T ss_pred CCceEEEEcCccHhH
Confidence 466788877774443
No 364
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=23.84 E-value=3.3e+02 Score=24.09 Aligned_cols=75 Identities=7% Similarity=-0.008 Sum_probs=43.5
Q ss_pred CCCCCCccEEecCC--CCeEEEeC-CCcEEEEEcCCCC---------cEEEEeCCCcccceEEEeCC--CCeEEEEeCCC
Q psy4900 398 SNLTNPTDLALDPT--SGLMFVAD-SNQILRTNMDGTM---------AMSIVSEAAYKASGVALDIN--AKRLFWCDNLL 463 (485)
Q Consensus 398 ~~~~~p~~iavD~~--~~~lywtd-~~~I~r~~~dG~~---------~~~i~~~~~~~p~glavD~~--~~~lYW~D~~~ 463 (485)
.......+|++.|. ..+|+-.. .+.|..-+++... ....+.........|++.+. ...|+-+ ...
T Consensus 55 ~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~d 133 (351)
T 3f3f_A 55 AHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACL-GND 133 (351)
T ss_dssp CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEE-ETT
T ss_pred cCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEe-cCC
Confidence 44556778888875 33444333 6777777777542 12223233455678888776 4445444 345
Q ss_pred CcEEEEEccC
Q psy4900 464 DYIETVDYEG 473 (485)
Q Consensus 464 ~~I~~~~~dG 473 (485)
+.|...++..
T Consensus 134 g~v~iwd~~~ 143 (351)
T 3f3f_A 134 GILRLYDALE 143 (351)
T ss_dssp CEEEEEECSS
T ss_pred CcEEEecCCC
Confidence 6777777653
No 365
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=23.83 E-value=4.8e+02 Score=24.83 Aligned_cols=94 Identities=12% Similarity=-0.061 Sum_probs=51.9
Q ss_pred CccccccCcccccceEEEEecCCCCCCccEEecCCCCeEEEeC-CCcEEEEEcCCCCcEEEEeCCCcccceEEEeCCCCe
Q psy4900 377 EGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVAD-SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKR 455 (485)
Q Consensus 377 ~I~~~~~~~c~~g~~~~~l~~~~~~~p~~iavD~~~~~lywtd-~~~I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~~ 455 (485)
.|.+.++. .......+........+|+++|...+|+-.. .+.|...++........+.........|+++ .++
T Consensus 291 ~i~vwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~ 364 (464)
T 3v7d_B 291 TLIVWDVA----QMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKF 364 (464)
T ss_dssp CEEEEETT----TTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSE
T ss_pred eEEEEECC----CCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCE
Confidence 45555554 2222233334455667889998776666555 6778888876443333333334445566655 333
Q ss_pred EEEEeCCCCcEEEEEccCCCeE
Q psy4900 456 LFWCDNLLDYIETVDYEGKNRF 477 (485)
Q Consensus 456 lYW~D~~~~~I~~~~~dG~~r~ 477 (485)
| .+-...+.|..-++....+.
T Consensus 365 l-~s~s~dg~v~vwd~~~~~~~ 385 (464)
T 3v7d_B 365 L-VSAAADGSIRGWDANDYSRK 385 (464)
T ss_dssp E-EEEETTSEEEEEETTTCCEE
T ss_pred E-EEEeCCCcEEEEECCCCcee
Confidence 3 33344566777776654433
No 366
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=23.82 E-value=1.6e+02 Score=31.35 Aligned_cols=65 Identities=9% Similarity=-0.012 Sum_probs=44.4
Q ss_pred CCCCeEEEeC------CCcEEEEEc---CCC--CcEEEEeCC-------CcccceEEEe-CCCCeEEEEeCCCC----cE
Q psy4900 410 PTSGLMFVAD------SNQILRTNM---DGT--MAMSIVSEA-------AYKASGVALD-INAKRLFWCDNLLD----YI 466 (485)
Q Consensus 410 ~~~~~lywtd------~~~I~r~~~---dG~--~~~~i~~~~-------~~~p~glavD-~~~~~lYW~D~~~~----~I 466 (485)
+..+++||+. .+.++|... +|. ..++|+..+ .....++++. +..++|.|+....+ .|
T Consensus 124 ~~g~~~yy~~~~~g~~~~vl~r~~~~~~~~~~~~~~vlld~n~~a~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l 203 (751)
T 2xe4_A 124 VYGKYRYYTREVKGKPYKIYCRVFTDKEPGDVAAEEVIIDVNQVAEGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTI 203 (751)
T ss_dssp EETTEEEEEEECTTCCSCEEEEEETTSCTTCTTTCEEEEEHHHHTTTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEE
T ss_pred EECCEEEEEEECCCCceeEEEEEcCCCCCCCCcCCEEEechhHhccCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEE
Confidence 3567899986 235788877 666 667777642 1234567888 77887877765432 48
Q ss_pred EEEEccCC
Q psy4900 467 ETVDYEGK 474 (485)
Q Consensus 467 ~~~~~dG~ 474 (485)
.+.+++|.
T Consensus 204 ~v~dl~~g 211 (751)
T 2xe4_A 204 EFKRISDP 211 (751)
T ss_dssp EEEETTCT
T ss_pred EEEECCCC
Confidence 99998876
No 367
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=23.34 E-value=4.3e+02 Score=24.17 Aligned_cols=77 Identities=8% Similarity=-0.030 Sum_probs=42.9
Q ss_pred cCCCCCCccEEecCCCCeEEEeC-CCcEEEEEcCCCCcEE--EEeCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEccC
Q psy4900 397 GSNLTNPTDLALDPTSGLMFVAD-SNQILRTNMDGTMAMS--IVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEG 473 (485)
Q Consensus 397 ~~~~~~p~~iavD~~~~~lywtd-~~~I~r~~~dG~~~~~--i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG 473 (485)
........+|++.|...+|+-.. ...|..-+++....+. .+.........|++.+..+.|. +-...+.|..-+++.
T Consensus 58 ~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~-s~s~D~~v~iwd~~~ 136 (345)
T 3fm0_A 58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLA-TCSRDKSVWVWEVDE 136 (345)
T ss_dssp SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEE-EEETTSCEEEEEECT
T ss_pred cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEE-EEECCCeEEEEECCC
Confidence 34455677899998766666554 4555555555443222 2223344567788876555444 333456666666654
Q ss_pred C
Q psy4900 474 K 474 (485)
Q Consensus 474 ~ 474 (485)
.
T Consensus 137 ~ 137 (345)
T 3fm0_A 137 E 137 (345)
T ss_dssp T
T ss_pred C
Confidence 3
No 368
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=22.19 E-value=3.4e+02 Score=28.18 Aligned_cols=62 Identities=21% Similarity=0.340 Sum_probs=43.0
Q ss_pred cEEEEEcCCCCcEEEEeCCCcccceE-EEeCCCCeE--EEE-eCC-----------CCcEEEEEccCCCeEEEecCC
Q psy4900 422 QILRTNMDGTMAMSIVSEAAYKASGV-ALDINAKRL--FWC-DNL-----------LDYIETVDYEGKNRFLILRGS 483 (485)
Q Consensus 422 ~I~r~~~dG~~~~~i~~~~~~~p~gl-avD~~~~~l--YW~-D~~-----------~~~I~~~~~dG~~r~~~~~~~ 483 (485)
.+-.+.|||.....|+.++.....-| |.|+..++| -|. |.. .+.+.++++||-.|..|+.+.
T Consensus 273 ~~~vayLDG~~Ps~v~~rG~Ytr~~v~A~d~~~g~L~~~W~~ds~~~~~~~~~gqg~H~~svaDVDGDG~dEIv~Gs 349 (620)
T 2zuy_A 273 LAGTAYLDGERPSLVMARGYYTRTVLVAYDFRNGRLKKRWVFDSNQPGHEAYAGQGNHSLSVADVDGDGKDEIIYGA 349 (620)
T ss_dssp EEEEECTTCC-CEEEEEECSSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGTTCCCSSCEEECCSSSSSCEEEETT
T ss_pred ceeEEecCCCCceEEEecCcccceeEEEEEccCCceeeeeEecCCCCcccccccccCcCceEEecCCCCceeEEEee
Confidence 47789999997777777766554444 678888754 343 442 268999999999888777553
No 369
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=22.00 E-value=1.6e+02 Score=27.37 Aligned_cols=74 Identities=8% Similarity=-0.120 Sum_probs=42.6
Q ss_pred CCCCCCccEEecCCCCeEEEeC-CCcEEEEEcCCCC----cEEEEeCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEcc
Q psy4900 398 SNLTNPTDLALDPTSGLMFVAD-SNQILRTNMDGTM----AMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYE 472 (485)
Q Consensus 398 ~~~~~p~~iavD~~~~~lywtd-~~~I~r~~~dG~~----~~~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~d 472 (485)
........|++.|...+|+-.. ...|...+++... .+.+.......+..|++.+..+.|+-.. ..+.|...++.
T Consensus 98 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~ 176 (377)
T 3dwl_C 98 RLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGC-ADRKAYVLSAY 176 (377)
T ss_dssp CCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEE-SSSCEEEEEEC
T ss_pred ccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEe-CCCEEEEEEEE
Confidence 4445567788888766666555 6677777777554 2333221445677888887655555443 34566666653
No 370
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=21.46 E-value=4e+02 Score=23.93 Aligned_cols=78 Identities=8% Similarity=-0.077 Sum_probs=45.8
Q ss_pred CCCccEEecCCC---CeEEEe-C-CCcEEEEEcCCCCcEEEEeCCCcccceEEEeCCCCeEEEEeCCCCcEEEEEccCCC
Q psy4900 401 TNPTDLALDPTS---GLMFVA-D-SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEGKN 475 (485)
Q Consensus 401 ~~p~~iavD~~~---~~lywt-d-~~~I~r~~~dG~~~~~i~~~~~~~p~glavD~~~~~lYW~D~~~~~I~~~~~dG~~ 475 (485)
....+|++.|.. +.++.+ . .+.|...++........+.........|++.+..++++.+-...+.|...++....
T Consensus 70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 149 (366)
T 3k26_A 70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT 149 (366)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE
T ss_pred CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe
Confidence 345667777663 233333 3 66777777775444444444455677888877455555554556777777776544
Q ss_pred eEE
Q psy4900 476 RFL 478 (485)
Q Consensus 476 r~~ 478 (485)
...
T Consensus 150 ~~~ 152 (366)
T 3k26_A 150 LVA 152 (366)
T ss_dssp EEE
T ss_pred EEE
Confidence 333
No 371
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Probab=21.20 E-value=60 Score=32.20 Aligned_cols=15 Identities=27% Similarity=0.685 Sum_probs=10.5
Q ss_pred cccCCCCCCeeeCCCCce
Q psy4900 187 TCQASPTGGVCQCPEGQK 204 (485)
Q Consensus 187 ~C~n~~~~~~C~C~~G~~ 204 (485)
.|.+. +.|.|++||.
T Consensus 300 ~C~~~---~~C~C~~G~~ 314 (423)
T 2gy5_A 300 MCDRF---QGCLCSPGWQ 314 (423)
T ss_dssp EEETT---TEEECCTTCB
T ss_pred EecCC---CceECCCCCc
Confidence 46554 3499999985
No 372
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=21.18 E-value=3.8e+02 Score=25.24 Aligned_cols=115 Identities=10% Similarity=0.036 Sum_probs=0.0
Q ss_pred cccCCCCccCCCCCCccccccCcccccceEEEE--------ecCCCCCCccEEecCCC-CeEEEeC-CCcEEEEEcCCCC
Q psy4900 363 WKCDSENDCGDGSDEGDFCSEKTCAYFQFHAIV--------LGSNLTNPTDLALDPTS-GLMFVAD-SNQILRTNMDGTM 432 (485)
Q Consensus 363 ~~~~~~~~y~~d~~~I~~~~~~~c~~g~~~~~l--------~~~~~~~p~~iavD~~~-~~lywtd-~~~I~r~~~dG~~ 432 (485)
|.+++..+.-...+.|.+.++. ......- +........+|++.|.. .+|+-.. .+.|...++....
T Consensus 185 ~~~~~~~l~s~~d~~i~iwd~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 260 (447)
T 3dw8_B 185 INSDYETYLSADDLRINLWHLE----ITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASA 260 (447)
T ss_dssp ECTTSSEEEEECSSEEEEEETT----EEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCS
T ss_pred EcCCCCEEEEeCCCeEEEEECC----CCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCc
Q ss_pred c----EEEEeCCCc------------ccceEEEeCCCCeEEEEeCCCCcEEEEEccC-CCeEEEecCC
Q psy4900 433 A----MSIVSEAAY------------KASGVALDINAKRLFWCDNLLDYIETVDYEG-KNRFLILRGS 483 (485)
Q Consensus 433 ~----~~i~~~~~~------------~p~glavD~~~~~lYW~D~~~~~I~~~~~dG-~~r~~~~~~~ 483 (485)
. ..++..... ....|++.+..+.|.-... +.|...++.. ......+.+.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~ 326 (447)
T 3dw8_B 261 LCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY--LSVKVWDLNMENRPVETYQVH 326 (447)
T ss_dssp SSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES--SEEEEEETTCCSSCSCCEESC
T ss_pred cccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC--CeEEEEeCCCCccccceeecc
No 373
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=20.28 E-value=3.8e+02 Score=23.94 Aligned_cols=77 Identities=10% Similarity=0.090 Sum_probs=49.7
Q ss_pred CCCCCccEEecCCCCeEEEeC-CCcEEEEEcCCCC----cEEEEeCCCcccceEEEeCCCC-eEEEEeCCCCcEEEEEc-
Q psy4900 399 NLTNPTDLALDPTSGLMFVAD-SNQILRTNMDGTM----AMSIVSEAAYKASGVALDINAK-RLFWCDNLLDYIETVDY- 471 (485)
Q Consensus 399 ~~~~p~~iavD~~~~~lywtd-~~~I~r~~~dG~~----~~~i~~~~~~~p~glavD~~~~-~lYW~D~~~~~I~~~~~- 471 (485)
.-....+|++.|...+|+-+. ...|...+++... ...+. .....+..|++.+... .|+-.. ..+.|...++
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~~wd~~ 87 (342)
T 1yfq_A 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL-RYKHPLLCCNFIDNTDLQIYVGT-VQGEILKVDLI 87 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE-ECSSCEEEEEEEESSSEEEEEEE-TTSCEEEECSS
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee-ecCCceEEEEECCCCCcEEEEEc-CCCeEEEEEec
Confidence 344567788888766666655 6777777777655 22222 3344577888887666 565554 4677888888
Q ss_pred cCCCeE
Q psy4900 472 EGKNRF 477 (485)
Q Consensus 472 dG~~r~ 477 (485)
.+....
T Consensus 88 ~~~~~~ 93 (342)
T 1yfq_A 88 GSPSFQ 93 (342)
T ss_dssp SSSSEE
T ss_pred cCCceE
Confidence 665443
No 374
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=20.27 E-value=3.3e+02 Score=28.04 Aligned_cols=62 Identities=23% Similarity=0.319 Sum_probs=43.9
Q ss_pred cEEEEEcCCCCcEEEEeCCCccc-ceEEEeCCCCeE--EE-EeCC-----------CCcEEEEEccCCCeEEEecCC
Q psy4900 422 QILRTNMDGTMAMSIVSEAAYKA-SGVALDINAKRL--FW-CDNL-----------LDYIETVDYEGKNRFLILRGS 483 (485)
Q Consensus 422 ~I~r~~~dG~~~~~i~~~~~~~p-~glavD~~~~~l--YW-~D~~-----------~~~I~~~~~dG~~r~~~~~~~ 483 (485)
.+-.+.|||.....|+.++.... .-.|.|+..++| -| .|.. .+.+.++++||-.+..|+.+.
T Consensus 269 ~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDVDgDG~dEIv~Gs 345 (591)
T 2zux_A 269 LAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVDGDGKDEIIFGS 345 (591)
T ss_dssp EEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECCSSSSSCEEEETT
T ss_pred eeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeCCCCCCceEEEee
Confidence 46778999997777776654433 345778888865 55 3332 268999999999888877653
No 375
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=20.13 E-value=3.3e+02 Score=25.82 Aligned_cols=76 Identities=12% Similarity=0.048 Sum_probs=44.9
Q ss_pred ccEEecCC-CCeEEEe-------------C-CCcEEEEEcCCCCcEEEEeCCCcc--------cceEEEeCCC-CeEEEE
Q psy4900 404 TDLALDPT-SGLMFVA-------------D-SNQILRTNMDGTMAMSIVSEAAYK--------ASGVALDINA-KRLFWC 459 (485)
Q Consensus 404 ~~iavD~~-~~~lywt-------------d-~~~I~r~~~dG~~~~~i~~~~~~~--------p~glavD~~~-~~lYW~ 459 (485)
..|++||. .+.||.. + ...|++..=.|...+.+. ..+.. ..+|++|+.. ++||..
T Consensus 281 ~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~-~glp~~~~~~~~~~~~~~~~p~~~~~l~~g 359 (394)
T 3b7f_A 281 FPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD-RGLPTDQAWLTVKRQAMTADAHAPVGVYFG 359 (394)
T ss_dssp EEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC-BTSCCSSCCCCCCTBSEEECCSSSCCEEEE
T ss_pred EEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC-CCCCCccccceEEEEEEEECCCCCCEEEEE
Confidence 35888875 4566654 1 246777654466666654 33332 2469999866 456654
Q ss_pred eCCCCcEEEEEccCCCeEEEec
Q psy4900 460 DNLLDYIETVDYEGKNRFLILR 481 (485)
Q Consensus 460 D~~~~~I~~~~~dG~~r~~~~~ 481 (485)
...+.|.+..-.|..=+.+..
T Consensus 360 -~~~g~l~~S~D~G~tW~~~~~ 380 (394)
T 3b7f_A 360 -TTGGEIWASADEGEHWQCIAS 380 (394)
T ss_dssp -CTTSCEEEESSTTSBCEEEEC
T ss_pred -eCCCeEEEECCCCCCceEccc
Confidence 334568877666665444443
Done!