RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4900
(485 letters)
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 173 bits (440), Expect = 2e-47
Identities = 105/503 (20%), Positives = 165/503 (32%), Gaps = 71/503 (14%)
Query: 10 RKCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCPAT-------TGLSCDLDQFR 62
C P F+C+ CIP+ CD DC + DE C +F
Sbjct: 125 LTCGPASFQCN--SSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFH 182
Query: 63 CANGQKCIDAKLKCNYHNDCGDNSDEEKCNFTACHVGQFKCANSLCIPVSYHCDGYRDCI 122
C +G+ CI + +C+ DC D SDEE C C +F+C++ CI S CD DC
Sbjct: 183 CLSGE-CIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCK 241
Query: 123 DGSDETNCTSIA--CPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEETVCCDCS 180
D SDE C ++ NKF C G +CI +VC+ +DC D +DE C +
Sbjct: 242 DMSDEVGCVNVTLCEGPNKFKCHSG------ECITLDKVCNMARDCRDWSDEPIKECGTN 295
Query: 181 LL-----NCEFTCQASPTGGVCQCPEGQKVANDSRTCLLYMKNNLKQAVRSSTVSSHVKL 235
C C G C CP+G ++ R + +
Sbjct: 296 ECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQD---------------- 339
Query: 236 VLLEVYVNVLKVRKLPTTAEPQSPNPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRL 295
C + GG + C A L
Sbjct: 340 -------------------PDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYL 380
Query: 296 --SVNGNNCNQPTCAPGEFQCASGRCVPSTFKCDAENDCGDYSDETGCVNVTCSLSQFAC 353
+ + ++ +SD + + + L +
Sbjct: 381 FFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG 440
Query: 354 ENGR-CVPSTWKCDSENDCGD-------GSDEGDFCSEKTCAYFQFHAIVLGSNLTNPTD 405
+ V S + D +D + + P
Sbjct: 441 VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRA 500
Query: 406 LALDPTSGLMFVADSNQ---ILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNL 462
+ +DP G M+ D I + ++G S+V+E +G+ LD+ + RL+W D+
Sbjct: 501 IVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK 560
Query: 463 LDYIETVDYEGKNRFLILRGSQN 485
L I ++D G NR IL +
Sbjct: 561 LHSISSIDVNGGNRKTILEDEKR 583
Score = 165 bits (418), Expect = 1e-44
Identities = 94/486 (19%), Positives = 155/486 (31%), Gaps = 70/486 (14%)
Query: 10 RKCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCPATTGLSCDLDQFRCANGQ-K 68
+C +F+C G CI CDG +C++ DE + ++C F C +
Sbjct: 4 DRCERNEFQCQ--DGKCISYKWVCDGSAECQDGSDESQETCLS-VTCKSGDFSCGGRVNR 60
Query: 69 CIDAKLKCNYHNDCGDNSDEEKCNFTACHVGQFKCANSLCIPVSYHCDGYRDCIDGSDET 128
CI +C+ DC + SDE+ C C +F+C + CI + CD RDC+DGSDE
Sbjct: 61 CIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEA 120
Query: 129 NCTSIACPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEETVCCDCSLLNCEFTC 188
+C + C F C CIP+ CD DCED +DE
Sbjct: 121 SCPVLTCGPASFQCNSST------CIPQLWACDNDPDCEDGSDEW---------PQRCRG 165
Query: 189 QASPTGGVCQCPEGQKVANDSRTCLLYMKNNLKQAVRSSTVSSHVKLVLLEVYVNVLKVR 248
G C + H K
Sbjct: 166 LYVFQGDSSPCSAFEFHCLSGECI-------------------HSSWRCDGGPDCKDKSD 206
Query: 249 KLPTTAEPQSPNPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQPT-- 306
+ P+ ++G C H +C + + + C T
Sbjct: 207 EENCAVATCRPDEFQCSDGNCIHG-----------SRQCDREYDCKDMSDEVGCVNVTLC 255
Query: 307 CAPGEFQCASGRCVPSTFKCDAENDCGDYSDETGC-----------------VNVTCSLS 349
P +F+C SG C+ C+ DC D+SDE N
Sbjct: 256 EGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGY 315
Query: 350 QFACENGRCVPSTWKCDSENDCGDGSDEGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALD 409
+ C +G + + +C+ ++C D C Y + A+
Sbjct: 316 ECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVG 375
Query: 410 PTSGLMFVADSNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETV 469
+ L F + +R + + + ++ + R++W D I +
Sbjct: 376 SIAYLFF--TNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICST 433
Query: 470 DYEGKN 475
+ +
Sbjct: 434 QLDRAH 439
Score = 164 bits (415), Expect = 4e-44
Identities = 98/340 (28%), Positives = 133/340 (39%), Gaps = 52/340 (15%)
Query: 53 GLSCDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDE--EKCNFTACHVGQFKCAN--SLC 108
G C+ ++F+C +G KCI K C+ +C D SDE E C C G F C + C
Sbjct: 3 GDRCERNEFQCQDG-KCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRC 61
Query: 109 IPVSYHCDGYRDCIDGSDETNCTSIACPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCED 168
IP + CDG DC +GSDE C C ++F C G KCI + VCD +DC D
Sbjct: 62 IPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDG------KCISRQFVCDSDRDCLD 115
Query: 169 NADEETVCCDCSLLNCEFTCQASPTGGVCQCPEGQKVANDSRTCLLYMKNNLKQAVRSST 228
+DE + C + F C +S + D
Sbjct: 116 GSDEAS-CPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDG------------------- 155
Query: 229 VSSHVKLVLLEVYVNVLKVRKLPTTAEPQSPNPCGSNNGGCEHMCIITRASGNALGYKCA 288
E + + P S +G C H ++C
Sbjct: 156 --------SDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSS-----------WRCD 196
Query: 289 CDIGYRLSVNGNNCNQPTCAPGEFQCASGRCVPSTFKCDAENDCGDYSDETGCVNVT--C 346
+ + NC TC P EFQC+ G C+ + +CD E DC D SDE GCVNVT
Sbjct: 197 GGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCE 256
Query: 347 SLSQFACENGRCVPSTWKCDSENDCGDGSDEGDFCSEKTC 386
++F C +G C+ C+ DC D SDE
Sbjct: 257 GPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNE 296
Score = 102 bits (255), Expect = 3e-23
Identities = 58/221 (26%), Positives = 85/221 (38%), Gaps = 14/221 (6%)
Query: 7 PNFRKCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCPATTGLSCDLDQFRCANG 66
+ CS +F C G CI RCDG DC+++ DEE C T C D+F+C++G
Sbjct: 171 GDSSPCSAFEFHCL--SGECIHSSWRCDGGPDCKDKSDEENCAVAT---CRPDEFQCSDG 225
Query: 67 QKCIDAKLKCNYHNDCGDNSDEEKCN--FTACHVGQFKCANSLCIPVSYHCDGYRDCIDG 124
CI +C+ DC D SDE C +FKC + CI + C+ RDC D
Sbjct: 226 N-CIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDW 284
Query: 125 SDETNCTSIACPNNK------FLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEETVCCD 178
SDE +C G + C Q+ R+ + + ++ C
Sbjct: 285 SDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCS 344
Query: 179 CSLLNCEFTCQASPTGGVCQCPEGQKVANDSRTCLLYMKNN 219
+N E + G P + L+ N
Sbjct: 345 QLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNR 385
Score = 73.7 bits (180), Expect = 4e-14
Identities = 42/218 (19%), Positives = 66/218 (30%), Gaps = 21/218 (9%)
Query: 8 NFRKCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCPATTGLSCDLDQFRCANGQ 67
C P +F+C G CI ++CD YDC++ DE GC L ++F+C +G+
Sbjct: 211 AVATCRPDEFQCSD--GNCIHGSRQCDREYDCKDMSDEVGCV-NVTLCEGPNKFKCHSGE 267
Query: 68 KCIDAKLKCNYHNDCGDNSDEEKCNFTACHV-----------------GQFKCANSLCIP 110
CI CN DC D SDE + C + +
Sbjct: 268 -CITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLV 326
Query: 111 VSYHCDGYRDCIDGSDETNCTSIACPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNA 170
C+ +C D + K C G KA +
Sbjct: 327 AQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRH 386
Query: 171 DEETVCCDCSLLNCEFTCQASPTGGVCQCPEGQKVAND 208
+ + D S + + + +D
Sbjct: 387 EVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSD 424
Score = 52.9 bits (126), Expect = 1e-07
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 342 VNVTCSLSQFACENGRCVPSTWKCDSENDCGDGSDE-GDFCSEKTCAYFQFH 392
V C ++F C++G+C+ W CD +C DGSDE + C TC F
Sbjct: 2 VGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFS 53
Score = 39.0 bits (90), Expect = 0.003
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 256 PQSPNPCGS---NNGGCEHMCIIT-RASGNALGYKCACDIGYRLSVNGNNC 302
P+ N C +NGGC+++C+ + + ++ + CAC G L+ + +C
Sbjct: 640 PRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 690
Score = 29.8 bits (66), Expect = 2.3
Identities = 19/95 (20%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 394 IVLGSNLTNPTDLALDPTSGLMFVADS--NQILRTNMDGTMAMSIVSEAAYKASGVALDI 451
++ N+ P + LD SG ++ DS + I +++G +I+ + A +L +
Sbjct: 533 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV 592
Query: 452 NAKRLFWCDNLLDYIETVD-YEGKNRFLILRGSQN 485
++FW D + + I + + G + L+ +
Sbjct: 593 FEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLS 627
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 172 bits (436), Expect = 1e-46
Identities = 105/501 (20%), Positives = 170/501 (33%), Gaps = 67/501 (13%)
Query: 10 RKCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCPAT-------TGLSCDLDQFR 62
C P F+C+ CIP+ CD DC + DE C +F
Sbjct: 143 LTCGPASFQCN--SSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFH 200
Query: 63 CANGQKCIDAKLKCNYHNDCGDNSDEEKCNFTACHVGQFKCANSLCIPVSYHCDGYRDCI 122
C +G+ CI + +C+ DC D SDEE C C +F+C++ CI S CD DC
Sbjct: 201 CLSGE-CIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCK 259
Query: 123 DGSDETNCTSIA--CPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEETVCCDCS 180
D SDE C ++ NKF C G +CI +VC+ +DC D +DE C +
Sbjct: 260 DMSDEVGCVNVTLCEGPNKFKCHSG------ECITLDKVCNMARDCRDWSDEPIKECGTN 313
Query: 181 LL-----NCEFTCQASPTGGVCQCPEGQKVANDSRTCLLYMKNNLKQAVRSSTVSSHVKL 235
C C G C CP+G ++ R +
Sbjct: 314 ECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDE------------------- 354
Query: 236 VLLEVYVNVLKVRKLPTTAEPQSPNPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRL 295
+ +L E C H A + ++
Sbjct: 355 -----CQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKM 409
Query: 296 SVNGNNCNQPTCAPGEFQCASGRCVPSTFKCDAENDCGDYSDETGCVNVTCSLSQFACEN 355
+++ + + ++ +SD + + + L + +
Sbjct: 410 TLDRSE---------YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS 460
Query: 356 GR-CVPSTWKCDSENDCGD-------GSDEGDFCSEKTCAYFQFHAIVLGSNLTNPTDLA 407
V S + D +D + N + P +
Sbjct: 461 SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIV 520
Query: 408 LDPTSGLMFVADSNQ---ILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLD 464
+DP G M+ D I + ++G S+V+E +G+ LD+ + RL+W D+ L
Sbjct: 521 VDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 580
Query: 465 YIETVDYEGKNRFLILRGSQN 485
I ++D G NR IL +
Sbjct: 581 SISSIDVNGGNRKTILEDEKR 601
Score = 168 bits (427), Expect = 2e-45
Identities = 100/359 (27%), Positives = 135/359 (37%), Gaps = 60/359 (16%)
Query: 38 DCRNRKDEEGCPATTGLSCDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDE--EKCNFTA 95
G C+ ++F+C +G KCI K C+ +C D SDE E C
Sbjct: 6 RWTVALLLAAAGTAVGDRCERNEFQCQDG-KCISYKWVCDGSAECQDGSDESQETCLSVT 64
Query: 96 CHVGQFKCAN--SLCIPVSYHCDGYRDCIDGSDETNCTSIACPNNKFLCPMGAAGGKPKC 153
C G F C + CIP + CDG DC +GSDE C C ++F C G KC
Sbjct: 65 CKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDG------KC 118
Query: 154 IPKAQVCDGRKDCEDNADEETVCCDCSLLNCEFTCQAS---PTGGVCQCPEGQKVANDSR 210
I + VCD +DC D +DE + C + F C +S P C + +D
Sbjct: 119 ISRQFVCDSDRDCLDGSDEAS-CPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEW 177
Query: 211 TCLLYMKNNLKQAVRSSTVSSHVKLVLLEVYVNVLKVRKLPTTAEPQSPNPCGSNNGGC- 269
R +PC + C
Sbjct: 178 PQ-----------------------------------RCRGLYVFQGDSSPCSAFEFHCL 202
Query: 270 EHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQPTCAPGEFQCASGRCVPSTFKCDAE 329
CI ++C + + NC TC P EFQC+ G C+ + +CD E
Sbjct: 203 SGECI-------HSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDRE 255
Query: 330 NDCGDYSDETGCVNVT--CSLSQFACENGRCVPSTWKCDSENDCGDGSDEGDFCSEKTC 386
DC D SDE GCVNVT ++F C +G C+ C+ DC D SDE
Sbjct: 256 YDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNE 314
Score = 164 bits (415), Expect = 6e-44
Identities = 93/486 (19%), Positives = 155/486 (31%), Gaps = 70/486 (14%)
Query: 10 RKCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCPATTGLSCDLDQFRCANGQ-K 68
+C +F+C G CI CDG +C++ DE + ++C F C +
Sbjct: 22 DRCERNEFQCQ--DGKCISYKWVCDGSAECQDGSDESQETCLS-VTCKSGDFSCGGRVNR 78
Query: 69 CIDAKLKCNYHNDCGDNSDEEKCNFTACHVGQFKCANSLCIPVSYHCDGYRDCIDGSDET 128
CI +C+ DC + SDE+ C C +F+C + CI + CD RDC+DGSDE
Sbjct: 79 CIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEA 138
Query: 129 NCTSIACPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEETVCCDCSLLNCEFTC 188
+C + C F C CIP+ CD DCED +DE
Sbjct: 139 SCPVLTCGPASFQCNSS------TCIPQLWACDNDPDCEDGSDE---------WPQRCRG 183
Query: 189 QASPTGGVCQCPEGQKVANDSRTCLLYMKNNLKQAVRSSTVSSHVKLVLLEVYVNVLKVR 248
G C + + + + + +
Sbjct: 184 LYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEEN---------------- 227
Query: 249 KLPTTAEPQSPNPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQPT-- 306
P+ ++G C H +C + + + C T
Sbjct: 228 ---CAVATCRPDEFQCSDGNCIHGS-----------RQCDREYDCKDMSDEVGCVNVTLC 273
Query: 307 CAPGEFQCASGRCVPSTFKCDAENDCGDYSDETGCV-----------------NVTCSLS 349
P +F+C SG C+ C+ DC D+SDE N
Sbjct: 274 EGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGY 333
Query: 350 QFACENGRCVPSTWKCDSENDCGDGSDEGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALD 409
+ C +G + + +C+ ++C D C Y G L T
Sbjct: 334 ECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEE--GFQLDPHTKACKA 391
Query: 410 PTSGLMFVADSNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETV 469
S + +R + + + ++ + R++W D I +
Sbjct: 392 VGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICST 451
Query: 470 DYEGKN 475
+ +
Sbjct: 452 QLDRAH 457
Score = 131 bits (331), Expect = 7e-33
Identities = 77/316 (24%), Positives = 117/316 (37%), Gaps = 48/316 (15%)
Query: 73 KLKCNYHNDCGDNSDEEKCNFTACHVGQFKCANSLCIPVSYHCDGYRDCIDGSDETN--C 130
KL+ C +F+C + CI + CDG +C DGSDE+ C
Sbjct: 4 KLRWTVALLLAAAGTAVGDR---CERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETC 60
Query: 131 TSIACPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEETVCCDCSLLNCEFTCQA 190
S+ C + F C G +CIP+ CDG+ DC++ +DE+ C + EF C
Sbjct: 61 LSVTCKSGDFSC----GGRVNRCIPQFWRCDGQVDCDNGSDEQG-CPPKTCSQDEFRCHD 115
Query: 191 SPTGGVCQCPEGQKVANDSRTCLLYMKNNLKQAVRSSTVSSHVKLVLLEVYVNVLKVRKL 250
+C Q V + R CL V
Sbjct: 116 G------KCISRQFVCDSDRDCLDGS------------------------DEASCPVLTC 145
Query: 251 PTTAEPQSPNPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQPTCAPG 310
+ + + C C++ S +C ++ + + + C
Sbjct: 146 GPASFQCNSSTCIPQLWACDNDPDCEDGSDE-WPQRCRGLYVFQGDSSPCSAFEFHC--- 201
Query: 311 EFQCASGRCVPSTFKCDAENDCGDYSDETGCVNVTCSLSQFACENGRCVPSTWKCDSEND 370
SG C+ S+++CD DC D SDE C TC +F C +G C+ + +CD E D
Sbjct: 202 ----LSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYD 257
Query: 371 CGDGSDEGDFCSEKTC 386
C D SDE + C
Sbjct: 258 CKDMSDEVGCVNVTLC 273
Score = 109 bits (273), Expect = 1e-25
Identities = 59/208 (28%), Positives = 81/208 (38%), Gaps = 9/208 (4%)
Query: 7 PNFRKCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCPATTGLSCDLDQFRCANG 66
+ CS +F C G CI RCDG DC+++ DEE C T C D+F+C++G
Sbjct: 189 GDSSPCSAFEFHCLS--GECIHSSWRCDGGPDCKDKSDEENCAVAT---CRPDEFQCSDG 243
Query: 67 QKCIDAKLKCNYHNDCGDNSDEEKCNFTA--CHVGQFKCANSLCIPVSYHCDGYRDCIDG 124
CI +C+ DC D SDE C +FKC + CI + C+ RDC D
Sbjct: 244 N-CIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDW 302
Query: 125 SDETNCTSIACPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEETVCCDCSLLNC 184
SDE K + DG + E + C
Sbjct: 303 SDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQ-LVAQRRCEDIDECQDPDTC 361
Query: 185 EFTCQASPTGGVCQCPEGQKVANDSRTC 212
C G CQC EG ++ ++ C
Sbjct: 362 SQLCVNLEGGYKCQCEEGFQLDPHTKAC 389
Score = 101 bits (251), Expect = 9e-23
Identities = 41/112 (36%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 284 GYKCACDIGYRLSVNGNNCNQPTCAPGEFQCASGRCVPSTFKCDAENDCGDYSDETG--C 341
G+K + L+ G C EFQC G+C+ + CD +C D SDE+ C
Sbjct: 2 GWKLRWTVALLLAAAGTAVG-DRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETC 60
Query: 342 VNVTCSLSQFACEN--GRCVPSTWKCDSENDCGDGSDEGDFCSEKTCAYFQF 391
++VTC F+C RC+P W+CD + DC +GSDE C KTC+ +F
Sbjct: 61 LSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQG-CPPKTCSQDEF 111
Score = 56.4 bits (135), Expect = 1e-08
Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 326 CDAENDCGDYSDETGCVNVTCSLSQFACENGRCVPSTWKCDSENDCGDGSDEGDF-CSEK 384
V C ++F C++G+C+ W CD +C DGSDE C
Sbjct: 7 WTVALLLAAAGT---AVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSV 63
Query: 385 TCAYFQFH 392
TC F
Sbjct: 64 TCKSGDFS 71
Score = 44.8 bits (105), Expect = 5e-05
Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 6/100 (6%)
Query: 256 PQSPNPCGS---NNGGCEHMCIIT-RASGNALGYKCACDIGYRLSVNGNNCNQPTCAPGE 311
P+ N C +NGGC+++C+ + + ++ + CAC G L+ + +C A
Sbjct: 658 PRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTEAEAAVA 717
Query: 312 FQCAS--GRCVPSTFKCDAENDCGDYSDETGCVNVTCSLS 349
Q S V ST D + T L+
Sbjct: 718 TQETSTVRLKVSSTAVRTQHTTTRPVPDTSRLPGATPGLT 757
Score = 30.6 bits (68), Expect = 1.6
Identities = 19/95 (20%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 394 IVLGSNLTNPTDLALDPTSGLMFVADS--NQILRTNMDGTMAMSIVSEAAYKASGVALDI 451
++ N+ P + LD SG ++ DS + I +++G +I+ + A +L +
Sbjct: 551 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV 610
Query: 452 NAKRLFWCDNLLDYIETVD-YEGKNRFLILRGSQN 485
++FW D + + I + + G + L+ +
Sbjct: 611 FEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLS 645
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein
complex, RAP, escort protein, calcium- binding; 1.26A
{Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Length = 80
Score = 105 bits (265), Expect = 4e-28
Identities = 33/72 (45%), Positives = 45/72 (62%)
Query: 306 TCAPGEFQCASGRCVPSTFKCDAENDCGDYSDETGCVNVTCSLSQFACENGRCVPSTWKC 365
TC+ EF+C G+C+ F CD++ DC D SDE C +TC + F C + C+P W C
Sbjct: 2 TCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWAC 61
Query: 366 DSENDCGDGSDE 377
D++ DC DGSDE
Sbjct: 62 DNDPDCEDGSDE 73
Score = 95.0 bits (237), Expect = 3e-24
Identities = 31/76 (40%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 55 SCDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDEEKCNFTACHVGQFKCANSLCIPVSYH 114
+C +FRC +G+ CI + C+ DC D SDE C C F+C +S CIP +
Sbjct: 2 TCSQAEFRCHDGK-CISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWA 60
Query: 115 CDGYRDCIDGSDETNC 130
CD DC DGSDE
Sbjct: 61 CDNDPDCEDGSDEWPQ 76
Score = 87.7 bits (218), Expect = 1e-21
Identities = 31/84 (36%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 96 CHVGQFKCANSLCIPVSYHCDGYRDCIDGSDETNCTSIACPNNKFLCPMGAAGGKPKCIP 155
C +F+C + CI + CD RDC+DGSDE +C + C F C CIP
Sbjct: 3 CSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSS------TCIP 56
Query: 156 KAQVCDGRKDCEDNADEETVCCDC 179
+ CD DCED +DE C
Sbjct: 57 QLWACDNDPDCEDGSDEWP--QRC 78
Score = 81.6 bits (202), Expect = 2e-19
Identities = 28/83 (33%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 10 RKCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCPATTGLSCDLDQFRCANGQKC 69
+ CS +F C G CI + CD DC + DE CP T C F+C + C
Sbjct: 1 KTCSQAEFRCH--DGKCISRQFVCDSDRDCLDGSDEASCPVLT---CGPASFQCNSST-C 54
Query: 70 IDAKLKCNYHNDCGDNSDEEKCN 92
I C+ DC D SDE
Sbjct: 55 IPQLWACDNDPDCEDGSDEWPQR 77
Score = 61.5 bits (150), Expect = 2e-12
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 345 TCSLSQFACENGRCVPSTWKCDSENDCGDGSDEGDFCSEKTCAYFQFH 392
TCS ++F C +G+C+ + CDS+ DC DGSDE C TC F
Sbjct: 2 TCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEAS-CPVLTCGPASFQ 48
Score = 60.4 bits (147), Expect = 5e-12
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 301 NCNQPTCAPGEFQCASGRCVPSTFKCDAENDCGDYSDETGC 341
+C TC P FQC S C+P + CD + DC D SDE
Sbjct: 36 SCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQ 76
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module,
complement type repeat, calcium, beta-2 hairpin,
loop-structures; NMR {Homo sapiens} PDB: 2fyl_B
Length = 82
Score = 98.1 bits (245), Expect = 2e-25
Identities = 39/77 (50%), Positives = 52/77 (67%), Gaps = 2/77 (2%)
Query: 303 NQPTCAPGEFQCASGRCVPSTFKCDAENDCGDYSDETGC--VNVTCSLSQFACENGRCVP 360
+ TC P +F CASGRC+P ++ CD ++DCGD SDE+ L+QF C NGRC+
Sbjct: 1 SARTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCIN 60
Query: 361 STWKCDSENDCGDGSDE 377
W+CD++NDCGD SDE
Sbjct: 61 INWRCDNDNDCGDNSDE 77
Score = 91.6 bits (228), Expect = 6e-23
Identities = 32/79 (40%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 55 SCDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDEEKC--NFTACHVGQFKCANSLCIPVS 112
+C +QF CA+G +CI C+ +DCGD SDE T + QF C N CI ++
Sbjct: 4 TCPPNQFSCASG-RCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCININ 62
Query: 113 YHCDGYRDCIDGSDETNCT 131
+ CD DC D SDE C+
Sbjct: 63 WRCDNDNDCGDNSDEAGCS 81
Score = 78.9 bits (195), Expect = 2e-18
Identities = 36/83 (43%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 10 RKCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCPATTGLSCDLDQFRCANGQKC 69
R C P F C G CIP CD DC +R DE A L QF C NG+ C
Sbjct: 3 RTCPPNQFSCA--SGRCIPISWTCDLDDDCGDRSDESASCAYPT-CFPLTQFTCNNGR-C 58
Query: 70 IDAKLKCNYHNDCGDNSDEEKCN 92
I+ +C+ NDCGDNSDE C+
Sbjct: 59 ININWRCDNDNDCGDNSDEAGCS 81
Score = 78.9 bits (195), Expect = 2e-18
Identities = 31/80 (38%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 96 CHVGQFKCANSLCIPVSYHCDGYRDCIDGSDETNCTSIA--CPNNKFLCPMGAAGGKPKC 153
C QF CA+ CIP+S+ CD DC D SDE+ + P +F C G +C
Sbjct: 5 CPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNG------RC 58
Query: 154 IPKAQVCDGRKDCEDNADEE 173
I CD DC DN+DE
Sbjct: 59 ININWRCDNDNDCGDNSDEA 78
Score = 58.8 bits (143), Expect = 2e-11
Identities = 22/42 (52%), Positives = 30/42 (71%)
Query: 345 TCSLSQFACENGRCVPSTWKCDSENDCGDGSDEGDFCSEKTC 386
TC +QF+C +GRC+P +W CD ++DCGD SDE C+ TC
Sbjct: 4 TCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTC 45
Score = 56.9 bits (138), Expect = 9e-11
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 298 NGNNCNQPTCAPGEFQCASGRCVPSTFKCDAENDCGDYSDETGCVN 343
+ + +F C +GRC+ ++CD +NDCGD SDE GC +
Sbjct: 37 SASCAYPTCFPLTQFTCNNGRCININWRCDNDNDCGDNSDEAGCSH 82
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller,
EGF-like, structural protein; 2.30A {Mus musculus} SCOP:
b.68.5.1
Length = 267
Score = 91.0 bits (226), Expect = 9e-21
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 4/98 (4%)
Query: 391 FHAIVLGSNLTNPTDLALDPTSGLMFVADSNQ----ILRTNMDGTMAMSIVSEAAYKASG 446
++ + L NP + DP G ++ D N+ I ++MDGT + + +G
Sbjct: 112 QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNG 171
Query: 447 VALDINAKRLFWCDNLLDYIETVDYEGKNRFLILRGSQ 484
+ D + +L W D E ++ R +L G Q
Sbjct: 172 LTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ 209
Score = 69.9 bits (171), Expect = 1e-13
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 395 VLGSNLTNPTDLALDPTSGLMFVADSNQ--ILRTNMDGTMAMSIVSEAAYKASGVALDIN 452
L LA D +++ D ++ I R ++ G +I+ + G+ALD
Sbjct: 30 FLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHL 89
Query: 453 AKRLFWCDNLLDYIETVDYEGKNR 476
+ +FW D+ LD IE +G R
Sbjct: 90 GRTIFWTDSQLDRIEVAKMDGTQR 113
Score = 66.0 bits (161), Expect = 3e-12
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Query: 394 IVLGSNLTNPTDLALDPTSGLMFVADS--NQILRTNMDGTMAMSIVSEAAYKASGVALDI 451
++ +L +P +ALD +F DS ++I MDGT + G+ D
Sbjct: 72 TIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDP 131
Query: 452 NAKRLFWCDNLLDY--IETVDYEGKNRFLIL 480
L+W D D IET +G NR ++
Sbjct: 132 VRGNLYWTDWNRDNPKIETSHMDGTNRRILA 162
Score = 42.1 bits (99), Expect = 2e-04
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 5/67 (7%)
Query: 415 MFVADSNQILRTNMDGTMAMSIVSEAAYK-----ASGVALDINAKRLFWCDNLLDYIETV 469
+ A + +I R ++ ++A G+A D K ++W D I
Sbjct: 4 LLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRA 63
Query: 470 DYEGKNR 476
G
Sbjct: 64 SLHGGEP 70
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 87.1 bits (215), Expect = 8e-19
Identities = 50/333 (15%), Positives = 92/333 (27%), Gaps = 77/333 (23%)
Query: 178 DCSLLN--CEFTCQASPTGGVCQCPEGQKVANDSRTCLLYMKNNLKQAVRSSTVSSHVKL 235
+C++ N C CQ C C G ++ D RTC
Sbjct: 5 NCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTC----------------------- 41
Query: 236 VLLEVYVNVLKVRKLPTTAEPQSPNPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRL 295
Q N C + G C C + + ++C C+ GY L
Sbjct: 42 ---------------------QDVNEC-AEEGYCSQGCTNSEGA-----FQCWCEAGYEL 74
Query: 296 SVNGNNCN-QPTCAPGEFQCASGRCVPSTFKCDAENDCGDYSDETGCVNVTCSLSQFACE 354
+ +C F + + + + F +
Sbjct: 75 RPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSD 134
Query: 355 NGRCVPSTWKCDSEN------DCGDGSDEGDFCSEKTCAYF---------------QFHA 393
+ N + Y+
Sbjct: 135 VTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK 194
Query: 394 IVLGSNLTNPTDLALDPTSGLMFVADSNQ---ILRTNMDGTMAMSIVSEAAYKASGVALD 450
++L +L P +AL P G ++ D I ++MDG+ I + +G+ +D
Sbjct: 195 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTID 254
Query: 451 INAKRLFWCDNLLDYIETVDYEGKNRFLILRGS 483
+R++W D IE + +G +R ++
Sbjct: 255 YAGRRMYWVDAKHHVIERANLDGSHRKAVISQG 287
Score = 84.1 bits (207), Expect = 8e-18
Identities = 50/246 (20%), Positives = 83/246 (33%), Gaps = 29/246 (11%)
Query: 260 NPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQPTCAPGEFQCASGRC 319
C NNGGC C + R +C C GYRL+ +G C E C S C
Sbjct: 4 ENCNVNNGGCAQKCQMIRG-----AVQCTCHTGYRLTEDGRTCQDVNECAEEGYC-SQGC 57
Query: 320 V--PSTFKCDAENDC---GDYSDETGCVNVTCSLSQFACENGRCVPSTWKCDSENDCGDG 374
F+C E D L + + +P + + +
Sbjct: 58 TNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLEN 117
Query: 375 SDEGDFCSEKTCAYF---------------QFHAIVLGSNLTNPTDLALDPTSGLMFVAD 419
+ DF + ++ V+ + L +P LA+D ++ D
Sbjct: 118 AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTD 177
Query: 420 S--NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCD-NLLDYIETVDYEGKNR 476
S ++I N+DG ++ ++ K +AL ++W D IE +G R
Sbjct: 178 SGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR 237
Query: 477 FLILRG 482
+I
Sbjct: 238 RIIADT 243
Score = 38.6 bits (89), Expect = 0.003
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 224 VRSSTVSSHVKLVLLEVYVNVLKVRKLPTTAEPQSPNPCGSNNGGCEHMCIITRASGNAL 283
++ + + ++ + + L +P N CG NNGGC H+C+ +
Sbjct: 312 NSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPS-----GQ 366
Query: 284 GYKCACDIGYRLSVNGNNC 302
Y CAC G+R +N + C
Sbjct: 367 NYTCACPTGFRK-INSHAC 384
Score = 30.5 bits (68), Expect = 1.4
Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 184 CEFTCQASPTGGVCQCPEGQKVANDSRTC 212
C C S C CP G + +S C
Sbjct: 357 CTHLCLPSGQNYTCACPTGFRKI-NSHAC 384
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 86.1 bits (212), Expect = 2e-18
Identities = 52/332 (15%), Positives = 99/332 (29%), Gaps = 80/332 (24%)
Query: 183 NCEFTCQASPTGGVCQCPEGQKVANDSRTCLLYMKNNLKQAVRSSTVSSHVKLVLLEVYV 242
C C G C CP+G ++ R C
Sbjct: 9 GCSHVCNDLKIGYECLCPDGFQLVAQ-RRC------------------------------ 37
Query: 243 NVLKVRKLPTTAEPQSPNPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNC 302
+ + C + C +C+ GYKC C+ G++L + C
Sbjct: 38 --------------EDIDEC-QDPDTCSQLCVNLEG-----GYKCQCEEGFQLDPHTKAC 77
Query: 303 N-QPTCAPGEFQCASGRCVPSTFKCDAENDCGDYSDETGCVNVTCSLSQFACENGRCVPS 361
+ A F + + + + + + S + + + +
Sbjct: 78 KAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMIC 137
Query: 362 TWKCDSENDCGDGSDEGDFCSEKTCA----------YF---------------QFHAIVL 396
+ + D + + Y+ +
Sbjct: 138 STQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF 197
Query: 397 GSNLTNPTDLALDPTSGLMFVADSNQ---ILRTNMDGTMAMSIVSEAAYKASGVALDINA 453
N + P + +DP G M+ D I + ++G S+V+E +G+ LD+ +
Sbjct: 198 RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLS 257
Query: 454 KRLFWCDNLLDYIETVDYEGKNRFLILRGSQN 485
RL+W D+ L I ++D G NR IL +
Sbjct: 258 GRLYWVDSKLHSISSIDVNGGNRKTILEDEKR 289
Score = 81.4 bits (200), Expect = 6e-17
Identities = 39/246 (15%), Positives = 71/246 (28%), Gaps = 30/246 (12%)
Query: 260 NPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQPTCA----------- 308
N C NNGGC H+C + GY+C C G++L + C
Sbjct: 1 NECLDNNGGCSHVCNDLKI-----GYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVN 55
Query: 309 -PGEFQCASGRCV---PSTFKCDAENDCGDYSDETGCVNVTCSLSQFACENGRCVPSTWK 364
G ++C P T C A +L + +
Sbjct: 56 LEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVV 115
Query: 365 CDSENDCGDGSDEGDFCSEK-------TCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFV 417
+ D + V+ ++ P LA+D ++
Sbjct: 116 ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYW 175
Query: 418 ADS--NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCD-NLLDYIETVDYEGK 474
DS + + G ++ E K + +D ++W D I+ G
Sbjct: 176 TDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 235
Query: 475 NRFLIL 480
+ + ++
Sbjct: 236 DIYSLV 241
Score = 44.4 bits (104), Expect = 5e-05
Identities = 16/83 (19%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 224 VRSSTVSSHVKLVLLEVYVNVLKVRKLPTTAEPQSPNPC---GSNNGGCEHMCIIT-RAS 279
++ ++ +L E ++ + +P+ N C +NGGC+++C+ + +
Sbjct: 314 FSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQIN 373
Query: 280 GNALGYKCACDIGYRLSVNGNNC 302
++ + CAC G L+ + +C
Sbjct: 374 PHSPKFTCACPDGMLLARDMRSC 396
Score = 36.0 bits (82), Expect = 0.023
Identities = 19/95 (20%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 394 IVLGSNLTNPTDLALDPTSGLMFVADS--NQILRTNMDGTMAMSIVSEAAYKASGVALDI 451
++ N+ P + LD SG ++ DS + I +++G +I+ + A +L +
Sbjct: 239 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV 298
Query: 452 NAKRLFWCDNLLDYIETVD-YEGKNRFLILRGSQN 485
++FW D + + I + + G + L+ +
Sbjct: 299 FEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLS 333
Score = 29.4 bits (65), Expect = 3.0
Identities = 16/121 (13%), Positives = 25/121 (20%), Gaps = 10/121 (8%)
Query: 12 CSPGDFECDPPHGICIPKDKRCDGY----------YDCRNRKDEEGCPATTGLSCDLDQF 61
+EC P G + +RC+ C N + C G D
Sbjct: 16 DLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTK 75
Query: 62 RCANGQKCIDAKLKCNYHNDCGDNSDEEKCNFTACHVGQFKCANSLCIPVSYHCDGYRDC 121
C + E + + Y D +
Sbjct: 76 ACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRM 135
Query: 122 I 122
I
Sbjct: 136 I 136
Score = 28.7 bits (63), Expect = 4.9
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Query: 176 CCDCSLLN--CEFTCQASP------TGGVCQCPEGQKVANDSRTCL 213
C +L N C++ C +P C CP+G +A D R+CL
Sbjct: 352 CERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL 397
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 85.0 bits (210), Expect = 9e-18
Identities = 35/170 (20%), Positives = 52/170 (30%), Gaps = 13/170 (7%)
Query: 35 GYYDCRNRKDEEGCPATTGLSCDLDQFRCANGQ----KCIDAKLKCNYHNDCGDNSDEEK 90
G+ + + + S + C + +C K + + D D +
Sbjct: 140 GFQQGADTQRRFKLSDLSINSTECLHVHCRGLETSLAECTFTKRRTMGYQDFADVVCYTQ 199
Query: 91 CNFTACHVGQFKCANSLCIPVSYHCDGYRDCIDGSDETNCTSIACPNNKFLCPMGAAGGK 150
+ F+C N I CDG DC D SDE C + C F C
Sbjct: 200 KA-DSPMDDFFQCVNGKYISQMKACDGINDCGDQSDELCCKA--CQGKGFHC------KS 250
Query: 151 PKCIPKAQVCDGRKDCEDNADEETVCCDCSLLNCEFTCQASPTGGVCQCP 200
CIP C+G DC DE S+ E + +
Sbjct: 251 GVCIPSQYQCNGEVDCITGEDEVGCAGFASVAQEETEILTADMDAERRRI 300
Score = 78.8 bits (194), Expect = 9e-16
Identities = 60/254 (23%), Positives = 89/254 (35%), Gaps = 26/254 (10%)
Query: 152 KCIPKAQVCDGRKDCEDNADEETVCCDCSLLNCEFTCQASPTGGVCQCPEGQKVANDSRT 211
+CI VC C N T C + + CQ C P + + N + T
Sbjct: 35 RCIEGTCVCKLPYQCPKN---GTAVCATNRRSFPTYCQQKSLE--CLHPGTKFLNNGTCT 89
Query: 212 CLLYMKNNLKQAVRSSTVSSHVKLVLLEVYVNV----------------LKVRKLPTTAE 255
+LK S VKLV + + + L ++ T
Sbjct: 90 AEGKFSVSLKHGNTDSEGIVEVKLVDQDKTMFICKSSWSMREANVACLDLGFQQGADTQR 149
Query: 256 PQSPNPCGSNNGGCEHM-CIITRASGNALGYKCACDIGYR--LSVNGNNCNQPTCAPGEF 312
+ N+ C H+ C S + +GY+ V + F
Sbjct: 150 RFKLSDLSINSTECLHVHCRGLETSLAECTFTKRRTMGYQDFADVVCYTQKADSPMDDFF 209
Query: 313 QCASGRCVPSTFKCDAENDCGDYSDETGCVNVTCSLSQFACENGRCVPSTWKCDSENDCG 372
QC +G+ + CD NDCGD SDE C C F C++G C+PS ++C+ E DC
Sbjct: 210 QCVNGKYISQMKACDGINDCGDQSDELCC--KACQGKGFHCKSGVCIPSQYQCNGEVDCI 267
Query: 373 DGSDEGDFCSEKTC 386
G DE +
Sbjct: 268 TGEDEVGCAGFASV 281
Score = 41.8 bits (98), Expect = 4e-04
Identities = 11/74 (14%), Positives = 16/74 (21%), Gaps = 7/74 (9%)
Query: 317 GRCVPSTFKCDAENDCGDYSDETGCVNVTCSLSQFACENGRCVPSTWKCDSENDCGDGSD 376
G FK + C + SL C + + D D
Sbjct: 144 GADTQRRFKLSDLSINSTECLHVHCRGLETSL-------AECTFTKRRTMGYQDFADVVC 196
Query: 377 EGDFCSEKTCAYFQ 390
+FQ
Sbjct: 197 YTQKADSPMDDFFQ 210
Score = 34.1 bits (78), Expect = 0.10
Identities = 24/95 (25%), Positives = 31/95 (32%), Gaps = 6/95 (6%)
Query: 305 PTCAPGEFQCASGRCVPSTFKCDAENDCGDYSDETGCVNVTCSLSQFACENGRCVPSTWK 364
C F C SG C+PS ++C+ E DC DE GC T
Sbjct: 239 KACQGKGFHCKSGVCIPSQYQCNGEVDCITGEDEVGCAGFAS------VAQEETEILTAD 292
Query: 365 CDSENDCGDGSDEGDFCSEKTCAYFQFHAIVLGSN 399
D+E C K + + IV G
Sbjct: 293 MDAERRRIKSLLPKLSCGVKNRMHIRRKRIVGGKR 327
Score = 32.2 bits (73), Expect = 0.45
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Query: 10 RKCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCPATTGLSCDLDQFRCANGQKC 69
+ C F C G+CIP +C+G DC +DE GC ++ + + A+
Sbjct: 239 KACQGKGFHCK--SGVCIPSQYQCNGEVDCITGEDEVGCAGFASVAQEETEILTADMDAE 296
Query: 70 IDAKLKCNYHNDCG 83
CG
Sbjct: 297 RRRIKSLLPKLSCG 310
Score = 28.3 bits (63), Expect = 6.6
Identities = 16/81 (19%), Positives = 23/81 (28%), Gaps = 12/81 (14%)
Query: 51 TTGLSCDLDQFRCANGQKCIDAKLKCNYHNDCGDN-----SDEEKCNFTACHVGQFKCAN 105
T LSCD + C Q+CI+ C C N + + T C +C +
Sbjct: 20 YTHLSCD--KVFCQPWQRCIEGTCVCKLPYQCPKNGTAVCATNRRSFPTYCQQKSLECLH 77
Query: 106 SLCIPVSYHCDGYRDCIDGSD 126
C
Sbjct: 78 P-----GTKFLNNGTCTAEGK 93
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 80.6 bits (198), Expect = 3e-16
Identities = 54/305 (17%), Positives = 105/305 (34%), Gaps = 37/305 (12%)
Query: 214 LYMKNNLKQAVRSSTVSSHVKLVLLEVYVNVLKVRKLPTTAEPQSPNPCGSNNGGCEHMC 273
+Y + ++++ + +S +++ +++ + + ++ N C S+NG C H+C
Sbjct: 220 IYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLC 279
Query: 274 IITRASGNALGYKCACDIGYRLSVNGNNCNQPTCAPGEFQC----------ASGRCVPST 323
+ G + C C Y L+ + C+ PT Q +
Sbjct: 280 LAVPVGG----FVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILP 335
Query: 324 FKCDAENDCGDYSDETGCV---NVTCSLSQFACENGRCVPSTWKCDSENDCGDGSDEG-- 378
DY + + ++ + A E+G + + +
Sbjct: 336 IHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLS 395
Query: 379 -DFCSEK---TCAYFQ----------FHAIVLGSNLTNPTDLALDPTSGLMFVADSNQ-- 422
D S TC +VL P + ++P G M+ + +
Sbjct: 396 IDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERS 455
Query: 423 --ILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEGKNRFLIL 480
I R +DGT + K +ALD +LFW D+ L IE+ D G NR ++
Sbjct: 456 PKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLE 515
Query: 481 RGSQN 485
+
Sbjct: 516 DSNIL 520
Score = 67.9 bits (165), Expect = 3e-12
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 390 QFHAIVLGSNLTNPTDLALDPTSGLMFVADSN---QILRTNMDGTMAMSIVSEAAYKASG 446
Q +++ +L +P LALDP G M+ + +I R MDG+ ++V A+G
Sbjct: 112 QHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGR-ANG 170
Query: 447 VALDINAKRLFWCDNLLDYIETVDYEGKNRFLILRGSQN 485
+ +D +RL+W D + IE+ + G NR +I +
Sbjct: 171 LTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPH 209
Score = 62.5 bits (151), Expect = 1e-10
Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Query: 391 FHAIVLGSNLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVA 448
+ + + + + L D T ++ D I R M+G+ +V G+A
Sbjct: 27 NNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA 86
Query: 449 LDINAKRLFWCDNLLDYIETVDYEGKNRFLILRG 482
+D K L+W D + IE +G++R +++
Sbjct: 87 VDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWK 120
Score = 57.1 bits (137), Expect = 8e-09
Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
Query: 394 IVLGSNLTNPTDLALDPTSGLMFVADS--NQILRTNMDGTMAMSIVSEAAYKASGVALDI 451
V+ L P +A+D ++ AD+ N+I + +DG +V + +ALD
Sbjct: 73 HVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDP 132
Query: 452 NAKRLFWCD-NLLDYIETVDYEGKNRFLILRG 482
++W + I+ +G R ++
Sbjct: 133 AEGFMYWTEWGGKPKIDRAAMDGSERTTLVPN 164
Score = 44.8 bits (105), Expect = 5e-05
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 251 PTTAEPQSPNPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQPTC 307
+ +PC +NGGC H+C++ +C+C + L + +C
Sbjct: 571 ELNLQEYRQHPCAQDNGGCSHICLVKGDGT----TRCSCPMHLVLLQDELSCGGTKH 623
Score = 39.4 bits (91), Expect = 0.003
Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 414 LMFVADSNQILRTNMDGT-MAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYE 472
+ + I R +++ ++I +AS + D+ R++W D L I
Sbjct: 8 FLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMN 67
Query: 473 GKNRFLILR 481
G ++
Sbjct: 68 GSALEHVVE 76
Score = 32.9 bits (74), Expect = 0.27
Identities = 9/37 (24%), Positives = 11/37 (29%), Gaps = 1/37 (2%)
Query: 177 CDCSLLNCEFTCQASPTGG-VCQCPEGQKVANDSRTC 212
C C C G C CP + D +C
Sbjct: 582 CAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSC 618
Score = 31.7 bits (71), Expect = 0.56
Identities = 32/175 (18%), Positives = 51/175 (29%), Gaps = 32/175 (18%)
Query: 70 IDAKLKCNYHNDCGDNSDEEKCNFT----ACHVGQFKCANSLCIPVS----YHCDGYRDC 121
+D Y + G ++ V AN L I + Y D +
Sbjct: 130 LDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNL 189
Query: 122 I-----DGSD-ETNCTSIACP---------------NNKFLCPMGAAGGKPKCIPKAQV- 159
I G + E + P + + + G+ + I + +
Sbjct: 190 IESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLD 249
Query: 160 -CDGRKDCEDNADEETVCCDCSLLNCEFTCQASPTGG-VCQCPEGQKVANDSRTC 212
+ C S +C C A P GG VC CP + D+RTC
Sbjct: 250 YVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTC 304
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 79.5 bits (195), Expect = 7e-16
Identities = 56/303 (18%), Positives = 109/303 (35%), Gaps = 41/303 (13%)
Query: 214 LYMKNNLKQAV-RSSTVSSHVKLVLLEVYVNVLKVRKLPTTAEPQSPNPCGSNNGGCEHM 272
LY + ++ + + + + + + +P + NPCG +NGGC H+
Sbjct: 226 LYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHL 285
Query: 273 CIITRASGNALGYKCACDIGYRLSVNGNNCNQPTCAPGEFQCASGRCVPSTFKCDAENDC 332
C++ S Y+CAC G +L NG C E + R D +
Sbjct: 286 CLM---SPVKPFYQCACPTGVKLLENGKTCKDGAT---ELLLLARRTDLRRISLDTPDFT 339
Query: 333 GDYSDETGCVNVTCSLSQFACENGRCVPSTWKCDSENDCG-DGSDEGDFCSEKTCA---- 387
+ ++ + G + + + DGS + +
Sbjct: 340 DIVLQLEDIRHAI-AID-YDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGI 397
Query: 388 ---------YF---------------QFHAIVLGSNLTNPTDLALDPTSGLMFVADSN-- 421
Y+ I++ +L P + LDP G M+ D
Sbjct: 398 AVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEI 457
Query: 422 -QILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEGKNRFLIL 480
+I R +DG+ + +V+ + +G+ALD + +++W D D IE ++ +G R +++
Sbjct: 458 PKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLV 517
Query: 481 RGS 483
Sbjct: 518 EDK 520
Score = 69.8 bits (170), Expect = 8e-13
Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 390 QFHAIVLGSNLTNPTDLALDPTSGLMFVADSNQ---ILRTNMDGTMAMSIVSEAAYKASG 446
++ L P +ALDP+SG M+ D + I R MDG+ I++ Y +G
Sbjct: 116 SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNG 175
Query: 447 VALDINAKRLFWCDNLLDYIETVDYEGKNRFLILRGS 483
+ LD ++L+W D L++I + +G NR +++GS
Sbjct: 176 LTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS 212
Score = 60.6 bits (146), Expect = 6e-10
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 394 IVLGSNLTNPTDLALDPTSGLMFVADS--NQILRTNMDGTMAMSIVSEAAYKASGVALDI 451
V+ S L +P LA D ++ DS N+I +N+DG++ + + + +ALD
Sbjct: 77 NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDP 136
Query: 452 NAKRLFWCD-NLLDYIETVDYEGKNRFLIL 480
++ ++W D + IE +G +RF+I+
Sbjct: 137 SSGFMYWTDWGEVPKIERAGMDGSSRFIII 166
Score = 55.2 bits (132), Expect = 3e-08
Identities = 20/97 (20%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 392 HAIVLGSNLTNPTDLALDPTSGLMFVADSNQ--ILRTNMDGTMAMS-IVSEAAYKASGVA 448
+A ++ L + + + GL++ +D ++ I RT + T ++ +V G+A
Sbjct: 31 NATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLA 90
Query: 449 LDINAKRLFWCDNLLDYIETVDYEGKNRFLILRGSQN 485
D ++L+W D+ + IE + +G R ++ +
Sbjct: 91 CDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELD 127
Score = 48.3 bits (114), Expect = 4e-06
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 214 LYMKNNLKQAVRSSTVSSHVKLVLLEVYVNVLKVRKLPTTAEPQSPNPCGSNNGGCEHMC 273
+Y + ++++ S + V+++ +++ ++ S NGGC H+C
Sbjct: 534 VYWTDWQRRSIERVHKRSAEREVIIDQLPDLMGLKATNVHRVIGSNPCA-EENGGCSHLC 592
Query: 274 IITRASGNALGYKCACDIGYRLSVNGNNCNQP 305
+ G +CAC IG+ L + C P
Sbjct: 593 LYRPQ-----GLRCACPIGFELISDMKTCIVP 619
Score = 40.6 bits (94), Expect = 0.001
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 184 CEFTCQASPTGGVCQCPEGQKVANDSRTCL 213
C C P G C CP G ++ +D +TC+
Sbjct: 588 CSHLCLYRPQGLRCACPIGFELISDMKTCI 617
Score = 38.6 bits (89), Expect = 0.004
Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 414 LMFVADSNQILRTNM-DGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYE 472
L+ A+ + + +G +IV A+ V + ++W D + I+ ++
Sbjct: 11 LLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFN 70
Query: 473 GKNR 476
Sbjct: 71 KTES 74
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 74.9 bits (183), Expect = 6e-15
Identities = 47/251 (18%), Positives = 80/251 (31%), Gaps = 31/251 (12%)
Query: 260 NPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQPTCAPGEFQCASGRC 319
N C + G C C + + ++C C+ GY L + +C P
Sbjct: 2 NEC-AEEGYCSQGCTNSEGA-----FQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDI 55
Query: 320 VPSTFKCD-----------AENDCGDYSDETGCV-NVTCSLSQFACENGRCVPSTWKCDS 367
A + E +VT A NG V
Sbjct: 56 RQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL 115
Query: 368 EN------DCGDG----SDEGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFV 417
E+ D +D G E ++L +L P +AL P G ++
Sbjct: 116 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYW 175
Query: 418 ADSNQ---ILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEGK 474
D I ++MDG+ I + +G+ +D +R++W D IE + +G
Sbjct: 176 TDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS 235
Query: 475 NRFLILRGSQN 485
+R ++
Sbjct: 236 HRKAVISQGLP 246
Score = 42.2 bits (98), Expect = 2e-04
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
Query: 225 RSSTVSSHVKLVLLEVYVNVLKVRKLPTTAEPQSPNPCGSNNGGCEHMCIITRASGNALG 284
++ + + ++ + + L +P N CG NNGGC H+C+ +
Sbjct: 270 SANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPS-----GQN 324
Query: 285 YKCACDIGYRLSVNGNNCNQPTCAPG 310
Y CAC G+R +N + C G
Sbjct: 325 YTCACPTGFRK-INSHACALEVLFQG 349
Score = 29.1 bits (64), Expect = 3.4
Identities = 8/29 (27%), Positives = 9/29 (31%)
Query: 184 CEFTCQASPTGGVCQCPEGQKVANDSRTC 212
C C S C CP G + N
Sbjct: 314 CTHLCLPSGQNYTCACPTGFRKINSHACA 342
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 73.9 bits (181), Expect = 9e-15
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 391 FHAIVLGSNLTNPTDLALDPTSGLMFVADSNQ---ILRTNMDGTMAMSIVSEAAYKASGV 447
+ N + P + +DP G M+ D I + ++G S+V+E +G+
Sbjct: 110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGI 169
Query: 448 ALDINAKRLFWCDNLLDYIETVDYEGKNRFLILRGSQN 485
LD+ + RL+W D+ L I ++D G NR IL +
Sbjct: 170 TLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKR 207
Score = 57.0 bits (137), Expect = 4e-09
Identities = 15/92 (16%), Positives = 35/92 (38%), Gaps = 3/92 (3%)
Query: 392 HAIVLGSNLTNPTDLALDPTSGLMFVADS--NQILRTNMDGTMAMSIVSEAAYKASGVAL 449
+ V+ ++ P LA+D ++ DS + + G ++ E K + +
Sbjct: 68 YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVV 127
Query: 450 DINAKRLFWCD-NLLDYIETVDYEGKNRFLIL 480
D ++W D I+ G + + ++
Sbjct: 128 DPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 159
Score = 53.5 bits (128), Expect = 5e-08
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Query: 395 VLGSNLTNPTDLALDPTSGLMFVADSNQ--ILRTNMDGTMAMS----IVSEAAYKASGVA 448
L NL N L + S ++ +D +Q I T +D +S ++S G+A
Sbjct: 24 SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 83
Query: 449 LDINAKRLFWCDNLLDYIETVDYEGKNRFLILRG 482
+D ++W D++L + D +G R + R
Sbjct: 84 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE 117
Score = 51.6 bits (123), Expect = 2e-07
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 256 PQSPNPCGS---NNGGCEHMCIIT-RASGNALGYKCACDIGYRLSVNGNNC 302
P+ N C +NGGC+++C+ + + ++ + CAC G L+ + +C
Sbjct: 264 PRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 314
Score = 44.7 bits (105), Expect = 4e-05
Identities = 19/95 (20%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 394 IVLGSNLTNPTDLALDPTSGLMFVADS--NQILRTNMDGTMAMSIVSEAAYKASGVALDI 451
++ N+ P + LD SG ++ DS + I +++G +I+ + A +L +
Sbjct: 157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV 216
Query: 452 NAKRLFWCDNLLDYIETVD-YEGKNRFLILRGSQN 485
++FW D + + I + + G + L+ +
Sbjct: 217 FEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLS 251
Score = 40.0 bits (93), Expect = 0.001
Identities = 7/63 (11%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 413 GLMFVADSNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYE 472
+F + +++ + +D + S++ + ++ + R++W D I + +
Sbjct: 2 AYLFFTNRHEVRKMTLDRSEYTSLIPNL-RNVVALDTEVASNRIYWSDLSQRMICSTQLD 60
Query: 473 GKN 475
+
Sbjct: 61 RAH 63
Score = 31.6 bits (71), Expect = 0.56
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 176 CCDCSLLNCEFTCQASPTGG--VCQCPEGQKVANDSRTCL 213
C L C Q +P C CP+G +A D R+CL
Sbjct: 277 NGGCQYL-CLPAPQINPHSPKFTCACPDGMLLARDMRSCL 315
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module,
COMP repeat, calcium, cell membrane, coated PIT,
cytoplasm, DEVE protein; NMR {Homo sapiens}
Length = 80
Score = 66.8 bits (163), Expect = 3e-14
Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Query: 299 GNNCNQPTCAPGEFQCA-SGRCVPSTFKCDAENDCGDYSDETGCVNVTCSLSQFACENGR 357
G+ TC P F C + CVP + CD + DC D +DE+ + + +G
Sbjct: 1 GSKLEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGSGS 60
Query: 358 CVPSTWKCDSENDCGD 373
+ S
Sbjct: 61 TEELRVRLASHLRKLR 76
Score = 55.3 bits (133), Expect = 4e-10
Identities = 10/69 (14%), Positives = 20/69 (28%)
Query: 55 SCDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDEEKCNFTACHVGQFKCANSLCIPVSYH 114
+C F C C+ + C+ DC D +DE + + +
Sbjct: 8 TCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGSGSTEELRVR 67
Query: 115 CDGYRDCID 123
+ +
Sbjct: 68 LASHLRKLR 76
Score = 53.3 bits (128), Expect = 2e-09
Identities = 18/81 (22%), Positives = 25/81 (30%), Gaps = 7/81 (8%)
Query: 89 EKCNFTACHVGQFKCANS-LCIPVSYHCDGYRDCIDGSDETNCTSIACPNNKFLCPMGAA 147
K C F C + +C+P + CDG +DC DG+DE+ C N
Sbjct: 2 SKLEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAG--CLYNSTGS----G 55
Query: 148 GGKPKCIPKAQVCDGRKDCED 168
G
Sbjct: 56 SGSGSTEELRVRLASHLRKLR 76
Score = 48.7 bits (116), Expect = 9e-08
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 341 CVNVTCSLSQFACEN-GRCVPSTWKCDSENDCGDGSDEGDFCSEKTCAYFQFH 392
TC S F+C CVP W CD + DC DG+DE +
Sbjct: 4 LEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESI-AAGCLYNSTGSG 55
Score = 47.2 bits (112), Expect = 2e-07
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 6/63 (9%)
Query: 10 RKCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCPATTGLSCDLDQFRCANGQKC 69
+ C P F C +C+P+ CDG DC + DE C + +G
Sbjct: 7 KTCGPSSFSCPGT-HVCVPERWLCDGDKDCADGADESIAA-----GCLYNSTGSGSGSGS 60
Query: 70 IDA 72
+
Sbjct: 61 TEE 63
Score = 41.0 bits (96), Expect = 4e-05
Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 6/65 (9%)
Query: 129 NCTSIACPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEE-TVCCDCSLLNCEFT 187
C + F CP C+P+ +CDG KDC D ADE C +
Sbjct: 3 KLEGKTCGPSSFSCPGTH-----VCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSG 57
Query: 188 CQASP 192
++
Sbjct: 58 SGSTE 62
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 70.9 bits (173), Expect = 1e-13
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 391 FHAIVLGSNLTNPTDLALDPTSGLMFVADSNQ---ILRTNMDGTMAMSIVSEAAYKASGV 447
++ L P +ALDP+SG M+ D + I R MDG+ I++ Y +G+
Sbjct: 112 LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL 171
Query: 448 ALDINAKRLFWCDNLLDYIETVDYEGKNRFLILRGS 483
LD ++L+W D L++I + +G NR +++GS
Sbjct: 172 TLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS 207
Score = 57.0 bits (137), Expect = 4e-09
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 394 IVLGSNLTNPTDLALDPTSGLMFVADS--NQILRTNMDGTMAMSIVSEAAYKASGVALDI 451
V+ S L +P LA D ++ DS N+I +N+DG++ + + + +ALD
Sbjct: 72 NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDP 131
Query: 452 NAKRLFWCD-NLLDYIETVDYEGKNRFLIL 480
++ ++W D + IE +G +RF+I+
Sbjct: 132 SSGFMYWTDWGEVPKIERAGMDGSSRFIII 161
Score = 56.2 bits (135), Expect = 6e-09
Identities = 20/97 (20%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 392 HAIVLGSNLTNPTDLALDPTSGLMFVADSNQ--ILRTNMDGTMAMS-IVSEAAYKASGVA 448
+A ++ L + + + GL++ +D ++ I RT + T ++ +V G+A
Sbjct: 26 NATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLA 85
Query: 449 LDINAKRLFWCDNLLDYIETVDYEGKNRFLILRGSQN 485
D ++L+W D+ + IE + +G R ++ +
Sbjct: 86 CDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELD 122
Score = 47.8 bits (113), Expect = 4e-06
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 256 PQSPNPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNC-NQPTCAP 309
P + NPCG +NGGC H+C+++ Y+CAC G +L NG C + +
Sbjct: 264 PNATNPCGIDNGGCSHLCLMSPVKP---FYQCACPTGVKLLENGKTCKDGNSHHH 315
Score = 38.5 bits (89), Expect = 0.003
Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 414 LMFVADSNQILRTNM-DGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYE 472
L+ A+ + + +G +IV A+ V + ++W D + I+ ++
Sbjct: 6 LLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFN 65
Query: 473 GKNR 476
Sbjct: 66 KTES 69
Score = 35.8 bits (82), Expect = 0.021
Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 174 TVCCDCSLLNCEFTCQASP--TGGVCQCPEGQKVANDSRTC 212
T C C C SP C CP G K+ + +TC
Sbjct: 267 TNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTC 307
>3a7q_B Low-density lipoprotein receptor-related protein; signaling
protein; HET: NAG; 2.60A {Homo sapiens}
Length = 44
Score = 60.0 bits (146), Expect = 3e-12
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 301 NCNQPTCAPGEFQCASGRCVPSTFKCDAENDCGDYSDETGC 341
+ C +FQC + RC+PS ++CD ++DC D+SDE C
Sbjct: 2 SGPAKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDC 42
Score = 56.5 bits (137), Expect = 5e-11
Identities = 19/39 (48%), Positives = 23/39 (58%)
Query: 341 CVNVTCSLSQFACENGRCVPSTWKCDSENDCGDGSDEGD 379
C QF C N RC+PS W+CD ++DC D SDE D
Sbjct: 3 GPAKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDD 41
Score = 53.0 bits (128), Expect = 1e-09
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 90 KCNFTACHVGQFKCANSLCIPVSYHCDGYRDCIDGSDETNCT 131
C QF+C N CIP + CD DC+D SDE +C
Sbjct: 2 SGPAKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDCP 43
Score = 48.0 bits (115), Expect = 5e-08
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 55 SCDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDEEKCN 92
C+ DQF+C N +CI + +C+ +DC D+SDE+ C
Sbjct: 7 ECEKDQFQCRNE-RCIPSVWRCDEDDDCLDHSDEDDCP 43
Score = 40.7 bits (96), Expect = 2e-05
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 10 RKCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCP 49
++C F+C + CIP RCD DC + DE+ CP
Sbjct: 6 KECEKDQFQCR--NERCIPSVWRCDEDDDCLDHSDEDDCP 43
Score = 40.3 bits (95), Expect = 3e-05
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 129 NCTSIACPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEE 173
+ + C ++F C +CIP CD DC D++DE+
Sbjct: 2 SGPAKECEKDQFQCRNE------RCIPSVWRCDEDDDCLDHSDED 40
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium
binding, complement-like repeat, signaling protein; NMR
{Homo sapiens} SCOP: g.12.1.1
Length = 45
Score = 58.1 bits (141), Expect = 1e-11
Identities = 20/38 (52%), Positives = 25/38 (65%)
Query: 305 PTCAPGEFQCASGRCVPSTFKCDAENDCGDYSDETGCV 342
P C PGEF CA+ RC+ +KCD +NDC D SDE +
Sbjct: 4 PQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPAL 41
Score = 55.4 bits (134), Expect = 1e-10
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 345 TCSLSQFACENGRCVPSTWKCDSENDCGDGSDEGD 379
C +FAC N RC+ WKCD +NDC D SDE
Sbjct: 5 QCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAP 39
Score = 51.5 bits (124), Expect = 3e-09
Identities = 18/36 (50%), Positives = 21/36 (58%)
Query: 96 CHVGQFKCANSLCIPVSYHCDGYRDCIDGSDETNCT 131
C G+F CANS CI + CDG DC+D SDE
Sbjct: 6 CQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPAL 41
Score = 47.3 bits (113), Expect = 1e-07
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 47 GCPATTGLSCDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDEEKCN 92
G P C +F CAN +CI + KC+ NDC DNSDE
Sbjct: 1 GSPPQ----CQPGEFACANS-RCIQERWKCDGDNDCLDNSDEAPAL 41
Score = 40.0 bits (94), Expect = 4e-05
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 10 RKCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGC 48
+C PG+F C + CI + +CDG DC + DE
Sbjct: 4 PQCQPGEFACA--NSRCIQERWKCDGDNDCLDNSDEAPA 40
Score = 39.6 bits (93), Expect = 5e-05
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 135 CPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEETVCC 177
C +F C +CI + CDG DC DN+DE C
Sbjct: 6 CQPGEFACANS------RCIQERWKCDGDNDCLDNSDEAPALC 42
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid
erythrocruorins, respiratory protein, hexagonal bilayer,
dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus
terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Length = 215
Score = 62.2 bits (150), Expect = 3e-11
Identities = 21/102 (20%), Positives = 32/102 (31%), Gaps = 6/102 (5%)
Query: 289 CDIGYRLSVNGNNCNQPTCAPGEFQCA--SGRCVPSTFKCDAENDCGDYSDETGCVNVTC 346
L P+C E QC +C+ F CD NDC + DE C T
Sbjct: 37 IRKAGSLRHRVEELEDPSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCTLPTK 96
Query: 347 SLSQFACEN--GRCVPSTWKCDSENDCGDGSDEGDFCSEKTC 386
+ +F + C + + + S F +
Sbjct: 97 AGDKFIGDVCFDHCTK--RRPEHMTLAFESSSIAAFFTPIAD 136
Score = 60.6 bits (146), Expect = 8e-11
Identities = 19/150 (12%), Positives = 47/150 (31%), Gaps = 12/150 (8%)
Query: 54 LSCDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDEEKCNFTACHVGQFKCA--NSLCIPV 111
++ + + +++ E+ +C + +C + CI
Sbjct: 17 ITTSISHVESLLDDRLDPKRIRKAGSLRHRV----EELEDPSCDEHEHQCGGDDPQCISK 72
Query: 112 SYHCDGYRDCIDGSDETNCTSIACPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNAD 171
+ CDG+ DC +G DE +CT +KF+ C + + +++
Sbjct: 73 LFVCDGHNDCRNGEDEKDCTLPTKAGDKFIG----DVCFDHCTKR--RPEHMTLAFESSS 126
Query: 172 EETVCCDCSLLNCEFTCQASPTGGVCQCPE 201
+ L+ ++ +
Sbjct: 127 IAAFFTPIADLHVHIEIESETDEDESEVSM 156
Score = 55.6 bits (133), Expect = 4e-09
Identities = 22/126 (17%), Positives = 34/126 (26%), Gaps = 6/126 (4%)
Query: 12 CSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCPATTGLSCDLDQFRCANG-QKCI 70
KR R+R +E P SCD + +C +CI
Sbjct: 16 KITTSISHVESLLDDRLDPKRIRKAGSLRHRVEELEDP-----SCDEHEHQCGGDDPQCI 70
Query: 71 DAKLKCNYHNDCGDNSDEEKCNFTACHVGQFKCANSLCIPVSYHCDGYRDCIDGSDETNC 130
C+ HNDC + DE+ C +F + + S
Sbjct: 71 SKLFVCDGHNDCRNGEDEKDCTLPTKAGDKFIGDVCFDHCTKRRPEHMTLAFESSSIAAF 130
Query: 131 TSIACP 136
+
Sbjct: 131 FTPIAD 136
Score = 55.2 bits (132), Expect = 7e-09
Identities = 29/129 (22%), Positives = 39/129 (30%), Gaps = 12/129 (9%)
Query: 10 RKCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCPATTGLSCDLDQFRCANGQ-K 68
C + +C CI K CDG+ DCRN +DE+ C T D+F
Sbjct: 53 PSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCTLPT---KAGDKFIGDVCFDH 109
Query: 69 CIDAKLKCNYHNDCGDNSDEEKCNFTA-----CHVGQFKCANSLCIPVSYHCDGYRDCID 123
C + H S FT H+ + VS DG D
Sbjct: 110 CTK---RRPEHMTLAFESSSIAAFFTPIADLHVHIEIESETDEDESEVSMPADGEYSFAD 166
Query: 124 GSDETNCTS 132
+
Sbjct: 167 HRLTIHPPE 175
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding,
calcium binding, complement-like repeat, LRP receptor,
signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1
Length = 44
Score = 56.5 bits (137), Expect = 6e-11
Identities = 20/38 (52%), Positives = 27/38 (71%)
Query: 304 QPTCAPGEFQCASGRCVPSTFKCDAENDCGDYSDETGC 341
+C+ +F+C SGRC+P + CD +NDCGDYSDET
Sbjct: 2 SHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHA 39
Score = 56.1 bits (136), Expect = 8e-11
Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 343 NVTCSLSQFACENGRCVPSTWKCDSENDCGDGSDE 377
+ +CS +QF C +GRC+P W CD +NDCGD SDE
Sbjct: 2 SHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDE 36
Score = 50.4 bits (121), Expect = 8e-09
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 95 ACHVGQFKCANSLCIPVSYHCDGYRDCIDGSDETNCT 131
+C QFKC + CIP + CDG DC D SDET+
Sbjct: 4 SCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHAN 40
Score = 48.1 bits (115), Expect = 6e-08
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 55 SCDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDEEKCN 92
SC QF+C +G +CI C+ NDCGD SDE N
Sbjct: 4 SCSSTQFKCNSG-RCIPEHWTCDGDNDCGDYSDETHAN 40
Score = 38.8 bits (91), Expect = 1e-04
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 134 ACPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEETVCC 177
+C + +F C G +CIP+ CDG DC D +DE C
Sbjct: 4 SCSSTQFKCNSG------RCIPEHWTCDGDNDCGDYSDETHANC 41
Score = 38.0 bits (89), Expect = 2e-04
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 10 RKCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGC 48
CS F+C+ G CIP+ CDG DC + DE
Sbjct: 3 HSCSSTQFKCN--SGRCIPEHWTCDGDNDCGDYSDETHA 39
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich
module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Length = 37
Score = 56.0 bits (136), Expect = 7e-11
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 307 CAPGEFQCASGRCVPSTFKCDAENDCGDYSDETGC 341
C+ EF C SG C+ S+++CD DC D SDE C
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36
Score = 54.1 bits (131), Expect = 3e-10
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 346 CSLSQFACENGRCVPSTWKCDSENDCGDGSDEGD 379
CS +F C +G C+ S+W+CD DC D SDE +
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEEN 35
Score = 51.8 bits (125), Expect = 2e-09
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 96 CHVGQFKCANSLCIPVSYHCDGYRDCIDGSDETNC 130
C +F C + CI S+ CDG DC D SDE NC
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36
Score = 45.6 bits (109), Expect = 4e-07
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 56 CDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDEEKC 91
C +F C +G+ CI + +C+ DC D SDEE C
Sbjct: 2 CSAFEFHCLSGE-CIHSSWRCDGGPDCKDKSDEENC 36
Score = 41.8 bits (99), Expect = 8e-06
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 12 CSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGC 48
CS +F C G CI RCDG DC+++ DEE C
Sbjct: 2 CSAFEFHCL--SGECIHSSWRCDGGPDCKDKSDEENC 36
Score = 37.5 bits (88), Expect = 2e-04
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 135 CPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEE 173
C +F C G +CI + CDG DC+D +DEE
Sbjct: 2 CSAFEFHCLSG------ECIHSSWRCDGGPDCKDKSDEE 34
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich
repeat, ligand binding domain, calcium CAGE, ligand
binding protein; NMR {Rattus norvegicus}
Length = 48
Score = 54.3 bits (131), Expect = 4e-10
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 340 GCVNVTCSLSQFACENGR-CVPSTWKCDSENDCGDGSDEGD 379
G + + C+ +QF C +G C+ S ++CD DC D SDE
Sbjct: 1 GAMVLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAG 41
Score = 51.9 bits (125), Expect = 2e-09
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 302 CNQPTCAPGEFQCASGR-CVPSTFKCDAENDCGDYSDETGC 341
C +F+CA G C+ S ++CD DC D SDE GC
Sbjct: 2 AMVLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGC 42
Score = 51.9 bits (125), Expect = 3e-09
Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 91 CNFTACHVGQFKCAN-SLCIPVSYHCDGYRDCIDGSDETNCTSIA 134
C QFKCA+ S CI Y CDG DC D SDE C +
Sbjct: 2 AMVLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCPTRP 46
Score = 50.4 bits (121), Expect = 9e-09
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 47 GCPATTGLSCDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDEEKC 91
G C QF+CA+G CI+++ +C+ DC DNSDE C
Sbjct: 1 GAMVLN---CTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGC 42
Score = 42.7 bits (101), Expect = 5e-06
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 10 RKCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCPA 50
C+ F+C CI RCDG YDCR+ DE GCP
Sbjct: 5 LNCTSAQFKCADGSS-CINSRYRCDGVYDCRDNSDEAGCPT 44
Score = 38.1 bits (89), Expect = 2e-04
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 130 CTSIACPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEE 173
+ C + +F C G+ CI CDG DC DN+DE
Sbjct: 2 AMVLNCTSAQFKCADGS-----SCINSRYRCDGVYDCRDNSDEA 40
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand
binding module, ligand binding repeat, compleme repeat,
protein binding; NMR {Homo sapiens}
Length = 50
Score = 53.5 bits (129), Expect = 7e-10
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 340 GCVNVTCSLSQFACENG-RCVPSTWKCDSENDCGDGSDEGDFCS 382
G TC S F+C CVP W CD + DC DG+DE
Sbjct: 1 GSEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAG 44
Score = 51.2 bits (123), Expect = 4e-09
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 302 CNQPTCAPGEFQCASG-RCVPSTFKCDAENDCGDYSDETGCVN 343
TC P F C CVP + CD + DC D +DE+
Sbjct: 2 SEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAG 44
Score = 48.5 bits (116), Expect = 5e-08
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 91 CNFTACHVGQFKCANS-LCIPVSYHCDGYRDCIDGSDETNC 130
C F C + +C+P + CDG +DC DG+DE+
Sbjct: 2 SEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIA 42
Score = 47.0 bits (112), Expect = 1e-07
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 47 GCPATTGLSCDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDEEKC 91
G T C F C C+ + C+ DC D +DE
Sbjct: 1 GSEGKT---CGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIA 42
Score = 42.4 bits (100), Expect = 7e-06
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 130 CTSIACPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEETVCCDC 179
C + F CP C+P+ +CDG KDC D ADE + C
Sbjct: 2 SEGKTCGPSSFSCPGTH-----VCVPERWLCDGDKDCADGADES-IAAGC 45
Score = 37.7 bits (88), Expect = 3e-04
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 10 RKCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCP 49
+ C P F C +C+P+ CDG DC + DE
Sbjct: 5 KTCGPSSFSCPG-THVCVPERWLCDGDKDCADGADESIAA 43
>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand
binding, calcium binding, LDLR, LRP, lipid binding
protein; NMR {Homo sapiens} SCOP: g.12.1.1
Length = 42
Score = 53.0 bits (128), Expect = 8e-10
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 305 PTCAPGEFQC-ASGRCVPSTFKCDAENDCGDYSDETGCVNV 344
C EFQC G C+P ++CD + DC D SDE C V
Sbjct: 2 GGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCEGV 42
Score = 51.1 bits (123), Expect = 5e-09
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 94 TACHVGQFKC-ANSLCIPVSYHCDGYRDCIDGSDETNCTSI 133
CH +F+C + LCIP+ + CDG DC+D SDE +C +
Sbjct: 2 GGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCEGV 42
Score = 50.0 bits (120), Expect = 1e-08
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 345 TCSLSQFACE-NGRCVPSTWKCDSENDCGDGSDEGD 379
C +F C +G C+P W+CD + DC D SDE
Sbjct: 3 GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKS 38
Score = 45.3 bits (108), Expect = 4e-07
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 55 SCDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDEEKCN 92
C D+F+C CI + +C+ DC D+SDE+ C
Sbjct: 3 GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCE 40
Score = 43.0 bits (102), Expect = 3e-06
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 12 CSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCPA 50
C +F+C G+CIP RCDG DC + DE+ C
Sbjct: 4 CHTDEFQC-RLDGLCIPLRWRCDGDTDCMDSSDEKSCEG 41
Score = 38.4 bits (90), Expect = 1e-04
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 134 ACPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEE 173
C ++F C + CIP CDG DC D++DE+
Sbjct: 3 GCHTDEFQCRLDG-----LCIPLRWRCDGDTDCMDSSDEK 37
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling
protein; NMR {Homo sapiens}
Length = 43
Score = 49.3 bits (118), Expect = 2e-08
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 55 SCDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDEEKC 91
C L F C N KC+ L CN +DCG+ +DE+ C
Sbjct: 6 KCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
Score = 48.5 bits (116), Expect = 3e-08
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 91 CNFTACHVGQFKCAN-SLCIPVSYHCDGYRDCIDGSDETNC 130
C +G F C N + C+P HC+G DC + +DE NC
Sbjct: 2 SQDVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
Score = 47.8 bits (114), Expect = 6e-08
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 340 GCVNVTCSLSQFACENG-RCVPSTWKCDSENDCGDGSDE 377
G +V CSL F C N +C+P C+ +DCG+ +DE
Sbjct: 1 GSQDVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADE 39
Score = 47.4 bits (113), Expect = 1e-07
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 302 CNQPTCAPGEFQCASG-RCVPSTFKCDAENDCGDYSDETGC 341
C+ G F C + +C+P C+ +DCG+ +DE C
Sbjct: 2 SQDVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
Score = 40.1 bits (94), Expect = 4e-05
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 11 KCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGC 48
KCS G F C C+P+ C+G DC N+ DE+ C
Sbjct: 6 KCSLGYFPCGNIT-KCLPQLLHCNGVDDCGNQADEDNC 42
Score = 38.9 bits (91), Expect = 1e-04
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 130 CTSIACPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEE 173
+ C F C G KC+P+ C+G DC + ADE+
Sbjct: 2 SQDVKCSLGYFPC-----GNITKCLPQLLHCNGVDDCGNQADED 40
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory
protein, hexagonal bilayer, dihedral D6 symmetry; HET:
HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1
g.12.1.1 h.1.32.1
Length = 217
Score = 53.4 bits (127), Expect = 2e-08
Identities = 17/134 (12%), Positives = 25/134 (18%), Gaps = 2/134 (1%)
Query: 11 KCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDE--EGCPATTGLSCDLDQFRCANGQK 68
C + EC CI CDG DCR+ DE E C
Sbjct: 53 HCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCSLNITHVGSSYTGLATWTSC 112
Query: 69 CIDAKLKCNYHNDCGDNSDEEKCNFTACHVGQFKCANSLCIPVSYHCDGYRDCIDGSDET 128
++ + G+ +
Sbjct: 113 EDLNPDHAIVTITAAHRKSFFPNRVWLRATLSYELDEHDHTVSTTQLRGFYNFGKRELLL 172
Query: 129 NCTSIACPNNKFLC 142
+C
Sbjct: 173 APLKGQSEGYGVIC 186
Score = 52.6 bits (125), Expect = 5e-08
Identities = 17/94 (18%), Positives = 23/94 (24%), Gaps = 7/94 (7%)
Query: 286 KCACDIGYRLSVNGNNCNQPTCAPGEFQCA--SGRCVPSTFKCDAENDCGDYSDETGC-- 341
+L +N + C E +C C+ CD E DC D SDE
Sbjct: 33 DVDKKTIRQLKARISNLEEHHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETC 92
Query: 342 ---VNVTCSLSQFACENGRCVPSTWKCDSENDCG 372
+ S C
Sbjct: 93 SLNITHVGSSYTGLATWTSCEDLNPDHAIVTITA 126
Score = 47.2 bits (111), Expect = 3e-06
Identities = 36/207 (17%), Positives = 61/207 (29%), Gaps = 26/207 (12%)
Query: 114 HCDGYRDCIDGSDE--TNCTSIACPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNAD 171
D + I +N C ++ C G P+CI CDG KDC D +D
Sbjct: 31 THDVDKKTIRQLKARISNLEEHHCDEHESEC----RGDVPECIHDLLFCDGEKDCRDGSD 86
Query: 172 EETVCCDCSLLNCEFTCQASPTGGVCQCPEGQKVANDSRTCLLYMKNNLKQAVRSSTVSS 231
E+ C ++ + + T C+ + A R S +
Sbjct: 87 EDPETCSLNITHVGSSYTGLATWTSCEDLNPDH-----------AIVTITAAHRKSFFPN 135
Query: 232 HVKLVLLEVYVNVLKVRKLPTTAEPQSPNPCGSNNGGCEHMCIITRASGNALGYKCACDI 291
V++ +L S + ++ G + GY CD
Sbjct: 136 R-------VWLRATLSYELDEHDHTVSTTQLRGFYNFGKRELLLAPLKGQSEGYGVICD- 187
Query: 292 GYRLSVNGNNCNQPTCAPGEFQCASGR 318
+ L + + + F CA
Sbjct: 188 -FNLGDDDHADCKIVVPSSLFVCAHFN 213
Score = 46.8 bits (110), Expect = 5e-06
Identities = 14/60 (23%), Positives = 19/60 (31%), Gaps = 4/60 (6%)
Query: 322 STFKCDAENDCGDYSDE--TGCVNVTCSLSQFACEN--GRCVPSTWKCDSENDCGDGSDE 377
+ D + + C + C C+ CD E DC DGSDE
Sbjct: 28 NKLTHDVDKKTIRQLKARISNLEEHHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDE 87
Score = 44.5 bits (104), Expect = 2e-05
Identities = 21/103 (20%), Positives = 28/103 (27%), Gaps = 12/103 (11%)
Query: 73 KLKCNYHNDCGDNSDE--EKCNFTACHVGQFKCANSL--CIPVSYHCDGYRDCIDGSDET 128
KL + C + +C + CI CDG +DC DGSDE
Sbjct: 29 KLTHDVDKKTIRQLKARISNLEEHHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDED 88
Query: 129 NCTSIACPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNAD 171
T C N G + C+
Sbjct: 89 PET---CSLNITHV-----GSSYTGLATWTSCEDLNPDHAIVT 123
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta
hairpin, 3-10 helix, calcium binding, membrane protein;
NMR {Coturnix coturnix} SCOP: g.12.1.1
Length = 47
Score = 47.9 bits (114), Expect = 6e-08
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 91 CNFTACHVGQFKCA-----NSLCIPVSYHCDGYRDCIDGSDETNC 130
F +C GQF+C+ + C P + CDG+ DC DG DE C
Sbjct: 2 SEFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
Score = 47.1 bits (112), Expect = 1e-07
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 302 CNQPTCAPGEFQCAS-----GRCVPSTFKCDAENDCGDYSDETGC 341
+C PG+F+C+ G C P + CD DC D DE GC
Sbjct: 2 SEFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
Score = 46.7 bits (111), Expect = 2e-07
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 341 CVNVTCSLSQFACE-----NGRCVPSTWKCDSENDCGDGSDE 377
+C QF C +G C P W CD DC DG DE
Sbjct: 2 SEFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 43
Score = 43.2 bits (102), Expect = 3e-06
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 6 VPNFRKCSPGDFECDPP---HGICIPKDKRCDGYYDCRNRKDEEGC 48
+ F C PG F C P HG C P+D CDG+ DC + +DE GC
Sbjct: 1 ISEFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
Score = 40.9 bits (96), Expect = 2e-05
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 130 CTSIACPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEE 173
+CP +F C G +C P+ +CDG DC+D DE
Sbjct: 2 SEFGSCPPGQFRC-SEPPGAHGECYPQDWLCDGHPDCDDGRDEW 44
Score = 38.2 bits (89), Expect = 2e-04
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 55 SCDLDQFRCANGQ----KCIDAKLKCNYHNDCGDNSDEEKC 91
SC QFRC+ +C C+ H DC D DE C
Sbjct: 6 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and
PG950; disulfide bond, alpha helix, calcium CAGE,
signaling protein; NMR {Coturnix japonica} SCOP:
g.12.1.1
Length = 47
Score = 47.9 bits (114), Expect = 7e-08
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 343 NVTCSLSQFACE-----NGRCVPSTWKCDSENDCGDGSDE 377
+ C QF C +G C P W CD DC DG DE
Sbjct: 2 SSRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 41
Score = 47.1 bits (112), Expect = 1e-07
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 305 PTCAPGEFQCAS-----GRCVPSTFKCDAENDCGDYSDETGC 341
C PG+F+C+ G C P + CD DC D DE GC
Sbjct: 3 SRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 44
Score = 45.9 bits (109), Expect = 4e-07
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 96 CHVGQFKCA-----NSLCIPVSYHCDGYRDCIDGSDETNCTS 132
C GQF+C+ + C P + CDG+ DC DG DE C +
Sbjct: 5 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCGT 46
Score = 45.5 bits (108), Expect = 5e-07
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 11 KCSPGDFECDPPH---GICIPKDKRCDGYYDCRNRKDEEGCPAT 51
+C PG F C P G C P+D CDG+ DC + +DE GC +
Sbjct: 4 RCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCGTS 47
Score = 40.2 bits (94), Expect = 4e-05
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 132 SIACPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEE 173
S CP +F C G +C P+ +CDG DC+D DE
Sbjct: 2 SSRCPPGQFRCS-EPPGAHGECYPQDWLCDGHPDCDDGRDEW 42
Score = 40.2 bits (94), Expect = 4e-05
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 55 SCDLDQFRCANGQ----KCIDAKLKCNYHNDCGDNSDEEKCN 92
C QFRC+ +C C+ H DC D DE C
Sbjct: 4 RCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCG 45
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid
erythrocruorins, respiratory protein, hexagonal bilayer,
dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus
terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Length = 220
Score = 51.8 bits (123), Expect = 8e-08
Identities = 19/88 (21%), Positives = 23/88 (26%), Gaps = 10/88 (11%)
Query: 301 NCNQPTCAPGEFQCA--SGRCVPSTFKCDAENDCGDYSDETGCVNVTCSLSQFACENGRC 358
C FQC C+ CD DC + DE C S N
Sbjct: 47 KIEGTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDED---PDVCDTSVVKAGNVFS 103
Query: 359 VPSTWKCDSENDCGDGSDEGDFCSEKTC 386
STW + C D +
Sbjct: 104 GTSTW-----HGCLAREDHVTRITITAS 126
Score = 51.0 bits (121), Expect = 2e-07
Identities = 26/168 (15%), Positives = 43/168 (25%), Gaps = 15/168 (8%)
Query: 10 RKCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCPATTGLSCDLDQFRCANGQKC 69
C F+C CI CDG+ DC N DE+ CD + N
Sbjct: 51 THCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPD------VCDTSVVKAGNVFSG 104
Query: 70 IDAKLKCNYHNDCGDNSDEEKCNFTACHVGQFKCANSLCIPVSYHCDGYRDCIDGSDETN 129
+ C D + + + + R + + N
Sbjct: 105 TST------WHGCLAREDHVTRITITASKRRKFFTARIWLRALVESELERHGENVTSSFN 158
Query: 130 CTSIACPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEETVCC 177
++ L + A VC + + A+ V
Sbjct: 159 AKGYYNFASRRLILL---PTDDHDDHLAVVCSFNRGDNERAECHRVTE 203
Score = 41.8 bits (97), Expect = 2e-04
Identities = 15/66 (22%), Positives = 19/66 (28%), Gaps = 4/66 (6%)
Query: 325 KCDAENDCGDYSDET-GCVNVTCSLSQFACE--NGRCVPSTWKCDSENDCGDGSDEG-DF 380
K D E+ + C F C C+ CD DC + DE D
Sbjct: 31 KIDPEHFVSEIDARVTKIEGTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDV 90
Query: 381 CSEKTC 386
C
Sbjct: 91 CDTSVV 96
Score = 40.6 bits (94), Expect = 5e-04
Identities = 31/183 (16%), Positives = 51/183 (27%), Gaps = 23/183 (12%)
Query: 135 CPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEETVCCDCSLLNCEFTCQASPTG 194
C F C G + +CI VCDG KDC + DE+ CD S++ + T
Sbjct: 53 CEKRTFQC----GGNEQECISDLLVCDGHKDCHNAHDEDPDVCDTSVVKAGNVFSGTSTW 108
Query: 195 GVCQCPEGQKVANDSRTCLLYMKNNLKQAVRSSTVSSHVKLVLLEVYVNVLKVRKLPTTA 254
C E + + + R ++ + L L + ++
Sbjct: 109 HGCLAREDHV-----------TRITITASKRRKFFTARIWLRALVESELERHGENVTSSF 157
Query: 255 EPQSPNPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQPTCAPGEFQC 314
+ S I+ + C + N QC
Sbjct: 158 NAKGYYNFAS------RRLILLPTDDHDDHLAVVCS--FNRGDNERAECHRVTEATLHQC 209
Query: 315 ASG 317
A
Sbjct: 210 ADL 212
Score = 39.1 bits (90), Expect = 0.001
Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 90 KCNFTACHVGQFKCANS--LCIPVSYHCDGYRDCIDGSDE--TNCTSIACPNNKFLC 142
K T C F+C + CI CDG++DC + DE C +
Sbjct: 47 KIEGTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCDTSVVKAGNVFS 103
Score = 34.1 bits (77), Expect = 0.063
Identities = 9/80 (11%), Positives = 25/80 (31%), Gaps = 5/80 (6%)
Query: 298 NGNNCNQPTCAPGEFQCASGRCVPSTFKCDAENDCGDYSDETGCVNVTCSLSQFACENGR 357
N ++ + C + + ST+ + C D + +T S +
Sbjct: 82 NAHDEDPDVCDTSVVKAGNVFSGTSTW-----HGCLAREDHVTRITITASKRRKFFTARI 136
Query: 358 CVPSTWKCDSENDCGDGSDE 377
+ + + + E + +
Sbjct: 137 WLRALVESELERHGENVTSS 156
Score = 30.6 bits (68), Expect = 0.87
Identities = 13/129 (10%), Positives = 26/129 (20%), Gaps = 9/129 (6%)
Query: 258 SPNPCGSNNGGCEHMCIITRASGNALGYK----CACDIGYRLSVNGNNCNQPTCAPGEFQ 313
P+ C ++ ++ T L + +
Sbjct: 87 DPDVCDTSVVKAGNVFSGTSTWHGCLAREDHVTRITITASKRRKFFTARIWLRALVESEL 146
Query: 314 CASGRCVPSTFKCDAENDCGDYSDETGCVNVTCSLSQFACENGRCVPSTWKCD-----SE 368
G V S+F + + C R +C +
Sbjct: 147 ERHGENVTSSFNAKGYYNFASRRLILLPTDDHDDHLAVVCSFNRGDNERAECHRVTEATL 206
Query: 369 NDCGDGSDE 377
+ C D
Sbjct: 207 HQCADLFVT 215
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor,
virus-protein complex, icosahedral virus, ATP-binding,
capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB:
1v9u_5*
Length = 39
Score = 47.0 bits (112), Expect = 1e-07
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 307 CAPGEFQCA--SGRCVPSTFKCDAENDCGDYSDETGCVN 343
C E C S +C+P +++CD ENDC DE C N
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCGN 39
Score = 47.0 bits (112), Expect = 1e-07
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 96 CHVGQFKCAN--SLCIPVSYHCDGYRDCIDGSDETNCTS 132
C + + C + CIPVS+ CDG DC G DE NC +
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCGN 39
Score = 45.4 bits (108), Expect = 5e-07
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 346 CSLSQFACENG--RCVPSTWKCDSENDCGDGSDEGD 379
C + + +C +C+P +W+CD ENDC G DE +
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEEN 36
Score = 45.0 bits (107), Expect = 5e-07
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 12 CSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCP 49
C + C CIP RCDG DC + +DEE C
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG 38
Score = 40.4 bits (95), Expect = 3e-05
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 56 CDLDQFRCANG-QKCIDAKLKCNYHNDCGDNSDEEKCN 92
C + + C +CI +C+ NDC DEE C
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG 38
Score = 38.9 bits (91), Expect = 8e-05
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 135 CPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEE 173
C ++ C +CIP + CDG DC+ DEE
Sbjct: 1 CRIHEISC----GAHSTQCIPVSWRCDGENDCDSGEDEE 35
>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease
activation, R drug design, substrate-assisted catalysis,
hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB:
1klj_L 1jbu_L 1ygc_L*
Length = 69
Score = 41.7 bits (98), Expect = 2e-05
Identities = 16/63 (25%), Positives = 21/63 (33%), Gaps = 8/63 (12%)
Query: 257 QSPNPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQPTCAPGEFQCAS 316
C + NGGCE C + C C GY L +G +C E+ C
Sbjct: 3 DDQLICVNENGGCEQYCSDHTGT----KRSCRCHEGYSLLADGVSCT----PTVEYPCGK 54
Query: 317 GRC 319
Sbjct: 55 IPI 57
Score = 25.5 bits (56), Expect = 9.1
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
Query: 179 CSLLN--CEFTCQASPTGG-VCQCPEGQKVANDSRTC 212
C N CE C C+C EG + D +C
Sbjct: 8 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 44
>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1
PDB: 1w8b_L* 1w7x_L* 1cvw_L*
Length = 53
Score = 40.8 bits (96), Expect = 2e-05
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 8/53 (15%)
Query: 262 CGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQPTCAPGEFQC 314
C + NGGCE C + C C GY L +G +C E+ C
Sbjct: 2 CVNENGGCEQYCSDHTGT----KRSCRCHEGYSLLADGVSCT----PTVEYPC 46
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 45.2 bits (107), Expect = 3e-05
Identities = 19/151 (12%), Positives = 33/151 (21%), Gaps = 29/151 (19%)
Query: 31 KRCDGYYDCRNRKDEEGCPATTGLSCDLDQFRCANGQKCIDAKLKCNYHNDC-GDNSDEE 89
C + + + + + + N C + DEE
Sbjct: 34 LPCLAWASAQAKALSKHQDFNSAVQLV---------------------ENFCRNPDGDEE 72
Query: 90 KCNFTACHVGQFKCANSLCIPVSYHCDGYRDCIDGSDETNCTSIACPNNKFLCPMGAAGG 149
C+V C + DG DE + +I
Sbjct: 73 GVW---CYVAGKPGDFGYCDLNYCEEAVEEETGDGLDEDSDRAIEGA---TATSEYQTFF 126
Query: 150 KPKCIPKA-QVCDGRKDCEDNADEETVCCDC 179
P C R E + E+ +
Sbjct: 127 NPATFGSGEADCGLRPLFEKKSLEDKTEREL 157
Score = 36.0 bits (83), Expect = 0.026
Identities = 20/107 (18%), Positives = 28/107 (26%), Gaps = 6/107 (5%)
Query: 298 NGNNC-NQPTCAPGEFQCASGRCVPSTFKCDAENDCGDYSDETGC---VNVTCSLSQFAC 353
N + C G C + + E + GD DE T +
Sbjct: 66 NPDGDEEGVWCYVAGKPGDFGYCDLNYCEEAVEEETGDGLDEDSDRAIEGATATSEYQTF 125
Query: 354 ENGRCVPS-TWKCDSENDCGDGSDEGDFCSEKTCAYFQFHAIVLGSN 399
N S C S E D + + IV GS+
Sbjct: 126 FNPATFGSGEADCGLRPLFEKKSLE-DKTERELLESYIDGRIVEGSD 171
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune
system; HET: TPO BMA; 2.51A {Homo sapiens}
Length = 554
Score = 45.4 bits (106), Expect = 3e-05
Identities = 26/158 (16%), Positives = 45/158 (28%), Gaps = 17/158 (10%)
Query: 55 SCDLDQFRCAN--------GQKCIDAKLKCNYHNDCGDNSDEEKCNFTACHVGQFKCANS 106
C ++R + G C D S C A F+C +
Sbjct: 22 PCQDKKYRHRSLLQPNKFGGTICSGD------IWDQASCSSSTTCVRQAQCGQDFQCKET 75
Query: 107 L-CIPVSYHCDGYRDCIDGSDETNCTSIACPNNKFLCPMGAAGGKPKCIPKAQVCDGRKD 165
C+ C+G +DC+DGSDE +C + + C + ++D
Sbjct: 76 GRCLKRHLVCNGDQDCLDGSDEDDCEDVRAIDED--CSQYEPIPGSQKAALGYNILTQED 133
Query: 166 CEDNADEETVCCDCSLLNCEFTCQASPTGGVCQCPEGQ 203
+ D C + + + G
Sbjct: 134 AQSVYDASYYGGQCETVYNGEWRELRYDSTCERLYYGD 171
Score = 43.8 bits (102), Expect = 1e-04
Identities = 22/98 (22%), Positives = 31/98 (31%), Gaps = 6/98 (6%)
Query: 31 KRCDG-YYDCRNRKDEEGCPATTGLSCDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDEE 89
C G +D + C F+C +C+ L CN DC D SDE+
Sbjct: 42 TICSGDIWDQASCSSSTTCVRQAQCG---QDFQCKETGRCLKRHLVCNGDQDCLDGSDED 98
Query: 90 KCNFTACHVGQFKCANSLCIPVSYHCDGYRDCIDGSDE 127
C C+ IP S + + D
Sbjct: 99 DCEDVRAI--DEDCSQYEPIPGSQKAALGYNILTQEDA 134
Score = 41.1 bits (95), Expect = 7e-04
Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 7/92 (7%)
Query: 306 TCAPGEFQCASGRCVPSTF---KCDAE-NDCGDYSDETGCVNVTCSLSQFAC-ENGRCVP 360
C +++ S P+ F C + D S T CV F C E GRC+
Sbjct: 22 PCQDKKYRHRS-LLQPNKFGGTICSGDIWDQASCSSSTTCVRQAQCGQDFQCKETGRCLK 80
Query: 361 STWKCDSENDCGDGSDEGDFCSEKTCAYFQFH 392
C+ + DC DGSDE D C +
Sbjct: 81 RHLVCNGDQDCLDGSDEDD-CEDVRAIDEDCS 111
Score = 40.7 bits (94), Expect = 9e-04
Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 3/85 (3%)
Query: 301 NCNQPTCAPGEFQCA-SGRCVPSTFKCDAENDCGDYSDETGCVNVTCSLSQFACENGRCV 359
C + +FQC +GRC+ C+ + DC D SDE C +V C +
Sbjct: 59 TCVRQAQCGQDFQCKETGRCLKRHLVCNGDQDCLDGSDEDDCEDVRA--IDEDCSQYEPI 116
Query: 360 PSTWKCDSENDCGDGSDEGDFCSEK 384
P + K + D
Sbjct: 117 PGSQKAALGYNILTQEDAQSVYDAS 141
Score = 34.6 bits (78), Expect = 0.085
Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 3/99 (3%)
Query: 12 CSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCPATTGLSCDLDQFRCANGQKCID 71
DF+C G C+ + C+G DC + DE+ C + D Q+ G +
Sbjct: 65 QCGQDFQC-KETGRCLKRHLVCNGDQDCLDGSDEDDCEDVRAIDEDCSQYEPIPGSQKAA 123
Query: 72 AKLKCNYHNDCGDNSDEEKCN--FTACHVGQFKCANSLC 108
D D + G+++
Sbjct: 124 LGYNILTQEDAQSVYDASYYGGQCETVYNGEWRELRYDS 162
>2wph_E Coagulation factor IXA light chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E
3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*
Length = 59
Score = 40.5 bits (95), Expect = 4e-05
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 8/53 (15%)
Query: 262 CGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQPTCAPGEFQC 314
C NG CE C + + C+C GYRL+ N +C F C
Sbjct: 2 CNIKNGRCEQFCKNSADN----KVVCSCTEGYRLAENQKSCE----PAVPFPC 46
Score = 25.1 bits (55), Expect = 9.8
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 179 CSLLN--CEFTCQASPTGGV-CQCPEGQKVANDSRTC 212
C++ N CE C+ S V C C EG ++A + ++C
Sbjct: 2 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSC 38
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood
coagulation, complex (protease/inhibitor); 3.00A {Bos
taurus} SCOP: g.3.11.1
Length = 51
Score = 38.9 bits (91), Expect = 1e-04
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 9/53 (16%)
Query: 262 CGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQPTCAPGEFQC 314
C +NGGC+ C R+ +C+C GY L + +C + F C
Sbjct: 1 CSLDNGGCDQFCREERSE-----VRCSCAHGYVLGDDSKSCV----STERFPC 44
Score = 28.9 bits (65), Expect = 0.40
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 179 CSLLN--CEFTCQASPTGGVCQCPEGQKVANDSRTC 212
CSL N C+ C+ + C C G + +DS++C
Sbjct: 1 CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSC 36
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease,
hydrolase, polymorphism, glycoprotein,
gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo
sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L*
2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L*
2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L*
2y5h_L* ...
Length = 55
Score = 39.3 bits (92), Expect = 1e-04
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 262 CGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNC 302
C +NG C+ C + S C+C GY L+ NG C
Sbjct: 4 CSLDNGDCDQFCHEEQNS-----VVCSCARGYTLADNGKAC 39
Score = 28.9 bits (65), Expect = 0.41
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 179 CSLLN--CEFTCQASPTGGVCQCPEGQKVANDSRTC 212
CSL N C+ C VC C G +A++ + C
Sbjct: 4 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 39
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic
resistance, E mechanism, virginiamycin B hydrolase
streptogramin; HET: MSE; 1.65A {Staphylococcus aureus}
PDB: 2z2o_A 2z2p_A*
Length = 299
Score = 40.8 bits (96), Expect = 5e-04
Identities = 14/88 (15%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Query: 389 FQFHAIVLGSNLTNPTDLALDPTSGLMFVADS--NQILRTNMDGTMAMSIVSEAAYKASG 446
F+ + L + T P + + G +++ N I N+DG + + K
Sbjct: 3 FKLQELNLTNQDTGPYGITVSD-KGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMC 61
Query: 447 VALDINAKRLFWCDNLLDYIETVDYEGK 474
+ + + +++ +N + I + +G
Sbjct: 62 LTIS-SDGEVWFTENAANKIGRITKKGI 88
Score = 37.3 bits (87), Expect = 0.007
Identities = 5/63 (7%), Positives = 17/63 (26%), Gaps = 3/63 (4%)
Query: 390 QFHAIVLGSNLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGV 447
+ + + P + ++ + N+I R G + + + +
Sbjct: 172 DITEFKIPTPASGPVGITKGN-DDALWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAI 230
Query: 448 ALD 450
Sbjct: 231 TAG 233
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 0.002
Identities = 36/249 (14%), Positives = 71/249 (28%), Gaps = 88/249 (35%)
Query: 61 FRCANGQKCIDAKLKCNYHNDCGDNSDEEKCNFTACHVGQFKCANSLCIPVSYHCDGYRD 120
F G++ ++ NY + + K FK N ++ +
Sbjct: 1676 FGGEKGKR-----IRENYSAMIFETIVDGKLKTEKI----FKEINEHSTSYTFRSE---- 1722
Query: 121 CIDGS-DETNCT-------SIACPN---NKFLCPMGA--AG------------------- 148
G T T A +K L P A AG
Sbjct: 1723 --KGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIE 1780
Query: 149 ---------GK--PKCIPKAQVCDGRKDCEDNA-DEETVCCDCSLLNCEFTCQ--ASPTG 194
G +P+ ++ GR + A + V S ++ + TG
Sbjct: 1781 SLVEVVFYRGMTMQVAVPRDEL--GRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTG 1838
Query: 195 GVCQCPEGQKVANDSRTCLLYMKNNL--KQAVRSSTVSSHVKLV--LLEVYVNVLKVRKL 250
+ + + N N+ +Q V + ++ + + V +N +K++K+
Sbjct: 1839 WLVE------IVNY----------NVENQQYV----AAGDLRALDTVTNV-LNFIKLQKI 1877
Query: 251 PTTAEPQSP 259
+S
Sbjct: 1878 DIIELQKSL 1886
Score = 33.1 bits (75), Expect = 0.27
Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 12/75 (16%)
Query: 389 FQFHAIVLGSNLTNPTDLALDP-TSGLMFVADSNQILRT-NMDGT-MAMSIVSEAAY--- 442
F IV G T ++ ++ F ++ + T T A++++ +AA+
Sbjct: 1691 MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF---TQPALTLMEKAAFEDL 1747
Query: 443 KASGVALDINAKRLF 457
K+ G+ I A F
Sbjct: 1748 KSKGL---IPADATF 1759
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A
{Staphylococcus cohnii}
Length = 300
Score = 37.7 bits (88), Expect = 0.006
Identities = 6/63 (9%), Positives = 20/63 (31%), Gaps = 3/63 (4%)
Query: 390 QFHAIVLGSNLTNPTDLALDPTSGLMFVADS--NQILRTNMDGTMAMSIVSEAAYKASGV 447
+ + + L + G ++ ++ N+I + + G + + G+
Sbjct: 51 RIKEFEVPTPDAKVMCLIVSS-LGDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPYGI 109
Query: 448 ALD 450
Sbjct: 110 TEG 112
Score = 37.7 bits (88), Expect = 0.006
Identities = 13/86 (15%), Positives = 31/86 (36%), Gaps = 4/86 (4%)
Query: 391 FHAIVLGSNLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVA 448
+ L + + P + L ++ + +N I R G + + A G+
Sbjct: 136 IYEYDLPNKGSYPAFITLGS-DNALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGIT 194
Query: 449 LDINAKRLFWCDNLLDYIETVDYEGK 474
N L++ + + + I + G+
Sbjct: 195 SG-NDGALWFVEIMGNKIGRITTTGE 219
Score = 35.8 bits (83), Expect = 0.022
Identities = 8/63 (12%), Positives = 20/63 (31%), Gaps = 3/63 (4%)
Query: 390 QFHAIVLGSNLTNPTDLALDPTSGLMFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGV 447
+ L +N P + G ++ + N+I R G ++ + + +
Sbjct: 177 KLEEYPLPTNAAAPVGITSGN-DGALWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAI 235
Query: 448 ALD 450
Sbjct: 236 TAG 238
Score = 33.1 bits (76), Expect = 0.17
Identities = 6/40 (15%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 390 QFHAIVLGSNLTNPTDLALDPTSGLMFVADSNQILRTNMD 429
L + P + G ++ A +I + N++
Sbjct: 261 TIQEYQLQTENAEPHGITFGK-DGSVWFALKCKIGKLNLN 299
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 35.4 bits (82), Expect = 0.006
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 260 NPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNG 299
N C NNGGC ++C + Y+C C G++L
Sbjct: 30 NECLDNNGGCSYVCNDLKIG-----YECLCPDGFQLVAQR 64
Score = 32.3 bits (74), Expect = 0.087
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 264 SNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNC 302
+ C +C+ YKC C+ G++L + C
Sbjct: 73 QDPDTCSQLCVNLEGG-----YKCQCEEGFQLDPHTKAC 106
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 35.8 bits (83), Expect = 0.023
Identities = 19/98 (19%), Positives = 27/98 (27%), Gaps = 28/98 (28%)
Query: 115 CDGYRDCIDGSDETNCTSIACPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEET 174
C C D CT C G +G +CE +E
Sbjct: 13 CLHNGSCQDSIWGYTCT----------CSPG--------------YEGS-NCELAKNE-- 45
Query: 175 VCCDCSLLNCEFTCQASPTGGVCQCPEGQKVANDSRTC 212
C C+ C C C +G ++ D + C
Sbjct: 46 -CHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQC 82
Score = 34.3 bits (79), Expect = 0.076
Identities = 20/121 (16%), Positives = 28/121 (23%), Gaps = 28/121 (23%)
Query: 258 SPNPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQPTCAPGEFQCASG 317
PC +NG C+ GY C C GY G+NC + A
Sbjct: 9 ISQPC-LHNGSCQDSIW---------GYTCTCSPGY----EGSNC----------ELAKN 44
Query: 318 RCVPSTFKCDAENDCGDYSDETGC---VNVTCSLSQFACENGRCVPSTWKCDSENDCGDG 374
C P ++ C + C C +
Sbjct: 45 ECHPERTDGC-QHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPDLQ 103
Query: 375 S 375
Sbjct: 104 D 104
Score = 28.1 bits (63), Expect = 5.7
Identities = 14/95 (14%), Positives = 25/95 (26%), Gaps = 9/95 (9%)
Query: 76 CNYHNDCGDNSDEEKCNFTACHVGQ--FKCANSLCIPVSYHCDGY-RDCIDGSDETNCTS 132
C ++ C D+ C C G C + DG C+ G + C
Sbjct: 13 CLHNGSCQDSIWGYTC---TCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYTC-- 67
Query: 133 IACPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCE 167
+C L + ++ +
Sbjct: 68 -SCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPD 101
>2e3x_A Coagulation factor X-activating enzyme light CHAI; disintegrin,
metalloproteinase, C-type lectin, hydrolase, BL
clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia
russellii siamensis}
Length = 427
Score = 36.1 bits (83), Expect = 0.025
Identities = 34/169 (20%), Positives = 53/169 (31%), Gaps = 12/169 (7%)
Query: 18 ECDPPHGICIPKDKRCDGYYDCRNRKDEEGCPATTGLSCDLDQFRCANGQKCIDAKLKCN 77
ECD C + D K + G GL C + + G C A+ +C+
Sbjct: 226 ECD-----CGSPANCQNPCCDAATCKLKPGAECGNGLCCYQCKIK-TAGTVCRRARDECD 279
Query: 78 YHNDCGDNS-----DEEKCNFTACHVGQFKCANSLCIPVSYHCDGYRDCIDGSDETNCTS 132
C S D+ + N C + C N C + C + +C
Sbjct: 280 VPEHCTGQSAECPRDQLQQNGKPCQNNRGYCYNGDCPIMRNQCISLFGSRANVAKDSCFQ 339
Query: 133 IACPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEETVCCDCSL 181
+ + G K C P+ C GR C +N+ C+
Sbjct: 340 ENLKGSYYGYCRKENGRKIPCAPQDVKC-GRLFCLNNSPRNKNPCNMHY 387
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 32.6 bits (75), Expect = 0.047
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 6/45 (13%)
Query: 260 NPCGSNNGGC-EHMCIITRASGNALGYKCACDIGYRLSVNGNNCN 303
+ C C +C ++C C GYR ++ +C
Sbjct: 4 DECSLKPSICGTAVCKNIPGD-----FECECPEGYRYNLKSKSCE 43
Score = 26.9 bits (60), Expect = 4.5
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 7/40 (17%)
Query: 266 NGGCEHMCIITRASGNALGYKCACDI--GYRLSVNGNNCN 303
C +C+ Y C CD G++L+ + +C
Sbjct: 50 ENMCAQLCVNYPGG-----YTCYCDGKKGFKLAQDQKSCE 84
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 33.1 bits (76), Expect = 0.047
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 262 CGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCN 303
C +NGGC H C+ +C+C GY+L + C+
Sbjct: 57 CSLDNGGCTHYCLEEVGW-----RRCSCAPGYKLGDDLLQCH 93
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 33.5 bits (77), Expect = 0.063
Identities = 14/63 (22%), Positives = 19/63 (30%), Gaps = 10/63 (15%)
Query: 258 SPNPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQPTCAPGEFQCASG 317
NGGCE C + C C GY L +G +C + C
Sbjct: 89 LICVN--ENGGCEQYCSDHTGTK----RSCRCHEGYSLLADGVSCTP--TVE--YPCGKI 138
Query: 318 RCV 320
+
Sbjct: 139 PIL 141
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 34.6 bits (79), Expect = 0.080
Identities = 33/196 (16%), Positives = 44/196 (22%), Gaps = 11/196 (5%)
Query: 12 CSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCPATTGLSCDLDQF-----RCANG 66
C C H CI D Y C + G G DLD + CA
Sbjct: 105 CKDKTHNCHK-HAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATN 163
Query: 67 QKCIDAKLKCNYHNDCGDNSDEEKCNFTACHVGQFKCANSLCIPVSYHCDGYRDCIDGSD 126
K C + + G ++ AC + R D
Sbjct: 164 ATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKD 223
Query: 127 ETNCTSIACPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEETVCCDCSLLNCEF 186
E CP + C D +D +E C +
Sbjct: 224 EVGDRCDNCPYVHNPAQIDTDNNGEGD-----ACSVDIDGDDVFNERDNCPYVYNTDQRD 278
Query: 187 TCQASPTGGVCQCPEG 202
T CP
Sbjct: 279 TDGDGVGDHCDNCPLV 294
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 34.0 bits (78), Expect = 0.090
Identities = 17/108 (15%), Positives = 28/108 (25%), Gaps = 14/108 (12%)
Query: 286 KCACDIGYRLSVNGNNCN--QPTCAP-GEFQCASGRCVPSTFKCDAENDCGDYSDETGC- 341
C+ GY L C G + C C +D E
Sbjct: 42 SIFCETGYELLQGHLPLKSFTAVCQKDGSWDRPMPACSIVD--CGPPDDLPSGRVEYITG 99
Query: 342 --VNVTCSLSQFACENGRCV----PSTWKCDSEN--DCGDGSDEGDFC 381
V ++ Q++CE + C+++ G C
Sbjct: 100 PGVTTYKAVIQYSCEETFYTMKVNDGKYVCEADGFWTSSKGEKSLPVC 147
Score = 29.3 bits (66), Expect = 3.1
Identities = 18/128 (14%), Positives = 22/128 (17%), Gaps = 32/128 (25%)
Query: 53 GLSCDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDEEKCNFTACHVGQFKCANSLCIPVS 112
L C C+ DCG D + +
Sbjct: 55 HLPLKSFTAVCQKDGSWDRPMPACS-IVDCGPPDDLPSGRVEYITGPG---VTTYKAVIQ 110
Query: 113 YHCDGYRDCIDGSDETNCTSIACPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADE 172
Y C + M GK C DG
Sbjct: 111 YSC----------------------EETFYTMKVNDGKYVCE-----ADGFWTSSKGEKS 143
Query: 173 ETVC-CDC 179
VC C
Sbjct: 144 LPVCEPVC 151
Score = 28.6 bits (64), Expect = 5.0
Identities = 15/88 (17%), Positives = 22/88 (25%), Gaps = 5/88 (5%)
Query: 16 DFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCPATTGLSCDLDQFRCANGQKCI---DA 72
D D P C D C D + + E + Q+ C + D
Sbjct: 68 DGSWDRPMPACSIVD--CGPPDDLPSGRVEYITGPGVTTYKAVIQYSCEETFYTMKVNDG 125
Query: 73 KLKCNYHNDCGDNSDEEKCNFTACHVGQ 100
K C + E+ G
Sbjct: 126 KYVCEADGFWTSSKGEKSLPVCEPVCGL 153
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller,
lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of
basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Length = 329
Score = 34.0 bits (78), Expect = 0.092
Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 12/73 (16%)
Query: 400 LTNPTDLALDPTSGLMFVADS---NQILRTNMDGTMAMSIVSEAAYKAS---------GV 447
PTD+A++P++G +FV+D ++I++ + G E++ + +
Sbjct: 142 FCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSL 201
Query: 448 ALDINAKRLFWCD 460
AL + +L D
Sbjct: 202 ALVPHLDQLCVAD 214
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR
{Homo sapiens} SCOP: g.3.11.1
Length = 53
Score = 30.5 bits (69), Expect = 0.11
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 257 QSPNPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNC 302
+S + C+H+C Y C+C GY L + ++C
Sbjct: 10 RSKSGEEDPQPQCQHLCHNYVGG-----YFCSCRPGYELQEDRHSC 50
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 34.2 bits (77), Expect = 0.12
Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 11/81 (13%)
Query: 135 CPNNKFLCPMGAAGGKPKCIPKAQVCDGR--KDCEDNADEETVCCDCSLLNCEFTCQASP 192
C N+K + +P C + + CE +++ C S ++
Sbjct: 54 CQNHKQ----CSKCLEP-CKESGDLRKHQCQSFCEPLFPKKSYECLTSCEFLKYILLVKQ 108
Query: 193 TGGVCQCPEGQKVANDSRTCL 213
CP +K + + C+
Sbjct: 109 ----GDCPAPEKASGFAAACV 125
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune
system; HET: TPO BMA; 2.51A {Homo sapiens}
Length = 537
Score = 33.7 bits (76), Expect = 0.13
Identities = 20/76 (26%), Positives = 26/76 (34%), Gaps = 1/76 (1%)
Query: 284 GYKCACDIGYRLSVNGNNCNQPTCAPGEFQCA-SGRCVPSTFKCDAENDCGDYSDETGCV 342
G C N + F CA +GRCV C+ +NDCGD SDE C
Sbjct: 43 GEPCNFSDKEVEDCVTNRPCRSQVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCR 102
Query: 343 NVTCSLSQFACENGRC 358
+ +
Sbjct: 103 RIYKKCQHEMDQYWGI 118
Score = 29.8 bits (66), Expect = 2.1
Identities = 22/120 (18%), Positives = 39/120 (32%), Gaps = 11/120 (9%)
Query: 31 KRCDG-YYDCRNRKDEEGCPATTGLSCDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDEE 89
+ C+ + + C + + F CA +C++ +L CN NDCGD SDE
Sbjct: 44 EPCNFSDKEVEDCVTNRPCRS----QVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEA 99
Query: 90 KCNFTACHVGQFKCANSLCIPVSYHCDGYRD------CIDGSDETNCTSIACPNNKFLCP 143
C ++ + + + C+ N +F P
Sbjct: 100 NCRRIYKKCQHEMDQYWGIGSLASGINLFTNSFEGPVLDHRYYAGGCSPHYILNTRFRKP 159
Score = 29.8 bits (66), Expect = 2.2
Identities = 21/103 (20%), Positives = 29/103 (28%), Gaps = 6/103 (5%)
Query: 46 EGCPATTGLSCDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDEEKCNFTACHVGQFKCAN 105
+ C L Q +G+ C + + D C G
Sbjct: 23 DPCQKKRYRYAYLLQPSQFHGEPCNFS------DKEVEDCVTNRPCRSQVRCEGFVCAQT 76
Query: 106 SLCIPVSYHCDGYRDCIDGSDETNCTSIACPNNKFLCPMGAAG 148
C+ C+G DC D SDE NC I + G
Sbjct: 77 GRCVNRRLLCNGDNDCGDQSDEANCRRIYKKCQHEMDQYWGIG 119
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 33.7 bits (77), Expect = 0.14
Identities = 15/91 (16%), Positives = 22/91 (24%), Gaps = 5/91 (5%)
Query: 11 KCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGC--PATTGLSCDLDQFRCANGQK 68
+ H D K E C T + C + A
Sbjct: 281 QSCRHSIPV-FCHSSFYHDTDFLGEELDIVAAKSHEACQKLCTNAVRCQFFTYTPAQAS- 338
Query: 69 CIDAKLKCNYHNDCGDNSDEEKCNFTACHVG 99
C + K KC Y + S + + G
Sbjct: 339 CNEGKGKC-YLKLSSNGSPTKILHGRGGISG 368
Score = 32.5 bits (74), Expect = 0.30
Identities = 11/88 (12%), Positives = 15/88 (17%), Gaps = 5/88 (5%)
Query: 306 TCAPGEFQCASGRCVPSTFKCDAENDCGDYSDETGC-----VNVTCSLSQFACENGRCVP 360
+C T E D C V C + C
Sbjct: 282 SCRHSIPVFCHSSFYHDTDFLGEELDIVAAKSHEACQKLCTNAVRCQFFTYTPAQASCNE 341
Query: 361 STWKCDSENDCGDGSDEGDFCSEKTCAY 388
KC + + Y
Sbjct: 342 GKGKCYLKLSSNGSPTKILHGRGGISGY 369
>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease,
disintegrin, calcium-binding, ADAM, SVMP, M protein,
toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A*
2erq_A*
Length = 427
Score = 33.4 bits (76), Expect = 0.18
Identities = 39/165 (23%), Positives = 54/165 (32%), Gaps = 11/165 (6%)
Query: 18 ECDPPHGICIPKDKRCDGYYDCRNRKDEEGCPATTGLSCDLDQFRCANGQKCIDAKLKCN 77
ECD C D D K +G GL CD +F+ G +C AK +C+
Sbjct: 233 ECD-----CGSPRTCRDPCCDATTCKLRQGAQCAEGLCCDQCRFK-GAGTECRAAKDECD 286
Query: 78 YHNDCGDNS----DEEKCNFTACHVGQFKCANSLCIPVSYHCDGYRDCIDGSDETNCTSI 133
+ C S D + N C C N C ++ C + C
Sbjct: 287 MADVCTGRSAECTDRFQRNGQPCKNNNGYCYNGKCPIMADQCIALFGPGATVSQDACFQF 346
Query: 134 ACPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEETVCCD 178
N + K C P+ C GR C N+ E C+
Sbjct: 347 NREGNHYGYCRKEQNTKIACEPQDVKC-GRLYCFPNSPENKNPCN 390
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 32.8 bits (75), Expect = 0.21
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Query: 265 NNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQPTCAPGEFQCASGR 318
GC+H C+ + S Y C+C GYRL + C + R
Sbjct: 9 RTDGCQHFCLPGQES-----YTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKR 57
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome,
connective tissue, extracellular matrix, structural
protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Length = 86
Score = 30.3 bits (69), Expect = 0.23
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Query: 262 CGSNNGGCE-HMCIITRASGNALGYKCACDIGYRLSVNGNNC 302
C + C +C T S Y+C C G++LS N + C
Sbjct: 49 CQRDPLLCRGGVCHNTEGS-----YRCECPPGHQLSPNISAC 85
Score = 26.5 bits (59), Expect = 6.3
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 14/72 (19%)
Query: 262 CGSNNGGCEH-MCIITRASGNALGYKCACDIGYRLS-VNGNNC---NQPTCAPGEFQCAS 316
C + C C+ T ++C CD GY + NC ++ C C
Sbjct: 6 CRISPDLCGRGQCVNTPGD-----FECKCDEGYESGFMMMKNCMDIDE--CQRDPLLCRG 58
Query: 317 GRCV--PSTFKC 326
G C +++C
Sbjct: 59 GVCHNTEGSYRC 70
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 31.7 bits (72), Expect = 0.29
Identities = 11/44 (25%), Positives = 16/44 (36%)
Query: 169 NADEETVCCDCSLLNCEFTCQASPTGGVCQCPEGQKVANDSRTC 212
A + C D + C C G C CP + +D + C
Sbjct: 113 VATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNC 156
Score = 31.3 bits (71), Expect = 0.34
Identities = 12/51 (23%), Positives = 15/51 (29%), Gaps = 6/51 (11%)
Query: 253 TAEPQSPNPC-GSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNC 302
N C + C H C Y C+C Y L + NC
Sbjct: 111 YYVATDINECTDFVDVPCSHFCNNFIGG-----YFCSCPPEYFLHDDMKNC 156
>2gfi_A Phytase; hydrolase; HET: NAG; 2.29A {Debaryomyces castellii}
Length = 458
Score = 32.5 bits (73), Expect = 0.30
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 9/71 (12%)
Query: 21 PPHGICIPKDKRCDGYYDCRNRKDEE-----GCPATTGLSCDLDQFRCANGQKCIDAKLK 75
P I + C R ++ C + G SC+L+ + +
Sbjct: 370 PQGARTIIEKYACGNESYVRYVINDAVIPIKKCSSGPGFSCNLNDYN----DYVAERVAG 425
Query: 76 CNYHNDCGDNS 86
NY CG+N+
Sbjct: 426 TNYVEQCGNNN 436
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A,
cytoplasmic domain, protein binding; HET: MSE; 1.70A
{Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Length = 128
Score = 31.1 bits (70), Expect = 0.32
Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 10/81 (12%)
Query: 8 NFRKCSPGDFECDPPHGICIPKDK----------RCDGYYDCRNRKDEEGCPATTGLSCD 57
+ +P + P G+ P D +++ + A +S
Sbjct: 46 KVKTTAPRRYCVRPNSGVIDPGSIVTVSVMLQPFDYDPNEKSKHKFMVQTIFAPPNISDM 105
Query: 58 LDQFRCANGQKCIDAKLKCNY 78
++ A + +D+KL+C +
Sbjct: 106 EAVWKEAKPDELMDSKLRCVF 126
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural
genomics, joint center F structural genomics, JCSG;
1.88A {Eubacterium rectale}
Length = 302
Score = 32.4 bits (73), Expect = 0.33
Identities = 7/65 (10%), Positives = 18/65 (27%), Gaps = 4/65 (6%)
Query: 419 DSNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEGKNRFL 478
N I+ N++ + + + I + + V +G
Sbjct: 205 RDNAIVHVNINNPNPVVLTEANIEHYNVYGSLI----FYQRGGDNPALCVVKNDGTGFKE 260
Query: 479 ILRGS 483
+ +G
Sbjct: 261 LAKGE 265
>3k7l_A Atragin; SVMP, metalloprotease, hydrolase; HET: NAG; 2.50A {Naja
atra}
Length = 422
Score = 31.5 bits (71), Expect = 0.55
Identities = 32/156 (20%), Positives = 47/156 (30%), Gaps = 12/156 (7%)
Query: 18 ECDPPHGICIPKDKRCDGYYDCRNRKDEEGCPATTGLSCDLDQFRCANGQKCIDAKLKCN 77
ECD C + K + + C+ +F+ A +C AK C+
Sbjct: 230 ECD-----CGSPADCQSACCNATTCKLQHEAQCDSEECCEKCKFKGA-RAECRAAKDDCD 283
Query: 78 YHNDCGDNS-----DEEKCNFTACHVGQFKCANSLCIPVSYHCDGYRDCIDGSDETNCTS 132
C S D + N C Q C N C ++ C R +C +
Sbjct: 284 LPELCTGQSAECPTDVFQRNGLPCQNNQGYCYNGKCPIMTNQCIALRGPGVKVSRDSCFT 343
Query: 133 IACPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCED 168
+ G K C K C GR C+
Sbjct: 344 LNQRTRGCGLCRMEYGRKIPCAAKDVKC-GRLFCKR 378
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A,
VAP-33, beta sandwitch fold, structural genomics,
NPPSFA; NMR {Mus musculus}
Length = 147
Score = 30.4 bits (68), Expect = 0.58
Identities = 13/93 (13%), Positives = 31/93 (33%), Gaps = 10/93 (10%)
Query: 8 NFRKCSPGDFECDPPHGICIPKDK----------RCDGYYDCRNRKDEEGCPATTGLSCD 57
+ +P + P GI P D +++ + A +S
Sbjct: 50 KVKTTAPRRYCVRPNSGIIDPGSIVTVSVMLQPFDYDPNEKSKHKFMVQTIFAPPNISDM 109
Query: 58 LDQFRCANGQKCIDAKLKCNYHNDCGDNSDEEK 90
++ A + +D+KL+C + ++ +
Sbjct: 110 EAVWKEAKPDELMDSKLRCVFEMPNENDKLNDS 142
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 31.6 bits (71), Expect = 0.61
Identities = 21/114 (18%), Positives = 31/114 (27%), Gaps = 3/114 (2%)
Query: 102 KCANSLCIPVSYHCDGYRDCIDGSDETNCTSIACPNNKFLCPMGAAGGKPKCIPKAQVCD 161
C N+ IP C G + S CP K G + D
Sbjct: 373 TCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFD 432
Query: 162 GRKDCEDNADEETVCCD---CSLLNCEFTCQASPTGGVCQCPEGQKVANDSRTC 212
C+ A+ + C+ + C G C+C E + C
Sbjct: 433 CDCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDEC 486
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 29.1 bits (66), Expect = 0.61
Identities = 6/39 (15%), Positives = 10/39 (25%), Gaps = 5/39 (12%)
Query: 262 CGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGN 300
C N C ++C C+ G+
Sbjct: 47 CSVGNPCGNGTCKNVIGG-----FECTCEEGFEPGPMMT 80
Score = 28.7 bits (65), Expect = 0.95
Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 7/41 (17%)
Query: 262 CGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNC 302
C + CI T S Y+C C GY L GN C
Sbjct: 8 CKEPDVCKHGQCINTDGS-----YRCECPFGYIL--AGNEC 41
>2oo4_A Notch 2, neurogenic locus notch homolog protein 2, HN2, notch2,
NOTC2; alpha-beta-sandwich, SEA domain, LNR, LIN12 notch
repeat, CY rich, HD domain; 2.00A {Homo sapiens}
Length = 234
Score = 30.9 bits (69), Expect = 0.67
Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 3/80 (3%)
Query: 299 GNNCNQPTCAPGEFQCASGRCVPSTFKCDAENDCGDYSDETGCVNVTCSLSQFACENGRC 358
CN C C+ P C + C DY + + C+ + +N C
Sbjct: 19 DEACNSHACQWDGGDCSLTMENPWA-NCSSPLPCWDYIN--NQCDELCNTVECLFDNFEC 75
Query: 359 VPSTWKCDSENDCGDGSDEG 378
++ C + C D +
Sbjct: 76 QGNSKTCKYDKYCADHFKDN 95
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 30.4 bits (69), Expect = 0.71
Identities = 12/85 (14%), Positives = 18/85 (21%), Gaps = 6/85 (7%)
Query: 264 SNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQPTCAPGEFQCASGRCV-PS 322
++ +C + S + C C L C + GRC
Sbjct: 8 ESSPCINGVCKNSPGS-----FICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEINI 62
Query: 323 TFKCDAENDCGDYSDETGCVNVTCS 347
C G C
Sbjct: 63 NGATLKSQCCSSLGAAWGSPCTLCQ 87
Score = 26.9 bits (60), Expect = 8.5
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 260 NPCGSNNGGCEH-MCIITRASGNALGYKCACDIGYRLSVNGNNC 302
+ C G C++ +C+ TR S +KC C G L G C
Sbjct: 108 DECEVFPGVCKNGLCVNTRGS-----FKCQCPSGMTLDATGRIC 146
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 29.6 bits (67), Expect = 1.2
Identities = 9/42 (21%), Positives = 12/42 (28%), Gaps = 5/42 (11%)
Query: 262 CGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCN 303
C C+ T S Y C C + L+ C
Sbjct: 6 CLDPTTCISGNCVNTPGS-----YICDCPPDFELNPTRVGCV 42
Score = 29.6 bits (67), Expect = 1.5
Identities = 7/62 (11%), Positives = 12/62 (19%), Gaps = 6/62 (9%)
Query: 260 NPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQPT-CAPGEFQCASGR 318
+ C G+R + C C G+
Sbjct: 82 GKAWGTPCEMCPAVNTSEYK-----ILCPGGEGFRPNPITVILEDIDECQELPGLCQGGK 136
Query: 319 CV 320
C+
Sbjct: 137 CI 138
Score = 28.9 bits (65), Expect = 2.6
Identities = 11/98 (11%), Positives = 22/98 (22%), Gaps = 9/98 (9%)
Query: 265 NNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQPTCAPGEFQCASGRCV--PS 322
N + C+ +IG +S C+ +
Sbjct: 47 GNCYLDIRPRGDNGD-----TACSNEIGVGVSKASCCCSLGKAWGTPCEM-CPAVNTSEY 100
Query: 323 TFKCDAENDCGDYSDETGCVNVT-CSLSQFACENGRCV 359
C ++ C C+ G+C+
Sbjct: 101 KILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCI 138
Score = 28.1 bits (63), Expect = 3.7
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 8/44 (18%)
Query: 262 CGSNNGGCE-HMCIITRASGNALG-YKCACDIGYRLSVNGNNCN 303
C G C+ CI N G ++C C GY L+ + C+
Sbjct: 125 CQELPGLCQGGKCI------NTFGSFQCRCPTGYYLNEDTRVCD 162
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat,
beta-propeller, translation; 1.95A {Drosophila
melanogaster} SCOP: b.68.9.1
Length = 286
Score = 30.2 bits (69), Expect = 1.4
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 400 LTNPTDLALDPTSGLMFVAD---SNQILRTNMDGTMAMSIVSEAAYKASGVALD 450
L P +A+ SG + V + ++QI N G + GV +D
Sbjct: 76 LLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVD 129
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller,
immunoglobulin-like, structural GEN joint center for
structural genomics, JCSG; 2.23A {Bacteroides
thetaiotaomicron}
Length = 430
Score = 30.5 bits (68), Expect = 1.4
Identities = 4/22 (18%), Positives = 7/22 (31%)
Query: 400 LTNPTDLALDPTSGLMFVADSN 421
+P + D F+ D
Sbjct: 398 FNHPEGIVYDEERECFFIGDRE 419
Score = 28.5 bits (63), Expect = 5.9
Identities = 5/37 (13%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 397 GSNLTNPTDLALDPTSGLMFVADS--NQILRTNMDGT 431
+ + P+ ++ + ILR++ D
Sbjct: 266 IQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWK 302
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 28.9 bits (65), Expect = 1.5
Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 8/67 (11%)
Query: 260 NPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQPTCAPGEFQCASGRC 319
+PC CE+ C + Y C C G+ + + Q C C +
Sbjct: 5 DPC--FRANCEYQCQPLDQTS----YLCVCAEGFAPIPHEPHRCQMFCNQTA--CPADCD 56
Query: 320 VPSTFKC 326
+ C
Sbjct: 57 PNTQASC 63
Score = 26.6 bits (59), Expect = 8.1
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 6/40 (15%)
Query: 264 SNNGGCEHMCIITRASGNALGYKCACDIGYRLS-VNGNNC 302
N G C +C + ++C C L+ G +C
Sbjct: 84 ENGGFCSGVCHNLPGT-----FECICGPDSALAGQIGTDC 118
>2dw0_A Catrocollastatin; apoptotic toxin, SVMP, metalloproteinase,
apoptosis, toxin; HET: NAG BMA MAN GM6; 2.15A {Crotalus
atrox} PDB: 2dw1_A* 2dw2_A* 3dsl_A* 3hdb_A*
Length = 419
Score = 30.4 bits (68), Expect = 1.5
Identities = 30/138 (21%), Positives = 45/138 (32%), Gaps = 7/138 (5%)
Query: 46 EGCPATTGLSCDLDQFRCANGQKCIDAKLKCNYHNDCGDNS-----DEEKCNFTACHVGQ 100
G G C+ +F + G +C + +C+ C S D N C
Sbjct: 247 SGSQCGHGDCCEQCKFSKS-GTECRASMSECDPAEHCTGQSSECPADVFHKNGQPCLDNY 305
Query: 101 FKCANSLCIPVSYHCDGYRDCIDGSDETNCTSIACPNNKFLCPMGAAGGKPKCIPKAQVC 160
C N C + + C E +C N + G K C P+ C
Sbjct: 306 GYCYNGNCPIMYHQCYDLFGADVYEAEDSCFERNQKGNYYGYCRKENGNKIPCAPEDVKC 365
Query: 161 DGRKDCEDNADEETVCCD 178
GR C+DN+ + C
Sbjct: 366 -GRLYCKDNSPGQNNPCK 382
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 29.8 bits (67), Expect = 1.9
Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 4/75 (5%)
Query: 285 YKCACDIGYRLSVNGNNCN--QPTC-APGEFQCASGRCVPSTFKCDAENDCGDYSDETG- 340
+ C GY+L + C G + A RC GD+ T
Sbjct: 28 FIATCKQGYQLIEGNQVLHSFTAVCQDDGTWHRAMPRCKIKDCGQPRNLPNGDFRYTTTM 87
Query: 341 CVNVTCSLSQFACEN 355
VN + Q+ C
Sbjct: 88 GVNTYKARIQYYCHE 102
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 29.7 bits (66), Expect = 1.9
Identities = 14/79 (17%), Positives = 22/79 (27%), Gaps = 5/79 (6%)
Query: 256 PQSPNPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQPTCAPGEFQCA 315
P + C +N C + G+ C C Y + NG C
Sbjct: 2 PLAQQTCANNRHQCSVHAECRDYAT---GFCCRCVANY--TGNGRQCVAEGSPQRVNGKV 56
Query: 316 SGRCVPSTFKCDAENDCGD 334
GR + + + D
Sbjct: 57 KGRIFVGSSQVPVVFENTD 75
>3kya_A Putative phosphatase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS hydrolase; HET: MSE; 1.77A {Bacteroides
thetaiotaomicron}
Length = 496
Score = 29.9 bits (66), Expect = 2.1
Identities = 4/22 (18%), Positives = 8/22 (36%)
Query: 400 LTNPTDLALDPTSGLMFVADSN 421
+ + L D + +V D
Sbjct: 443 FRDVSGLVYDDVKEMFYVHDQV 464
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 29.8 bits (66), Expect = 2.2
Identities = 13/69 (18%), Positives = 24/69 (34%)
Query: 120 DCIDGSDETNCTSIACPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEETVCCDC 179
+ + S C + C +CI + C+G DC DN+DE
Sbjct: 97 TAPLVAFQPCIPSKLCKIEEADCKNKFRCDSGRCIARKLECNGENDCGDNSDERDCGRTK 156
Query: 180 SLLNCEFTC 188
++ ++
Sbjct: 157 AVCTRKYNP 165
Score = 29.5 bits (65), Expect = 3.0
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 341 CVNVTCSLSQFACENGRCVPSTWKCDSENDCGDGSDEGDFCSEKTC 386
+ ++F C++GRC+ +C+ ENDCGD SDE D K
Sbjct: 113 KIEEADCKNKFRCDSGRCIARKLECNGENDCGDNSDERDCGRTKAV 158
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 28.7 bits (64), Expect = 2.6
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 5/41 (12%)
Query: 264 SNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQ 304
C+H C + C+C GY L N C++
Sbjct: 132 GEAPTCDHHCHNHLGG-----FYCSCRAGYVLHRNKRTCSE 167
>2c9a_A Receptor-type tyrosine-protein phosphatase MU; glycoprotein,
hydrolase, immunoglobulin domain; HET: NAG MAN NDG FUL;
2.7A {Homo sapiens} SCOP: b.1.1.4 b.29.1.25
Length = 259
Score = 29.1 bits (64), Expect = 3.1
Identities = 10/51 (19%), Positives = 14/51 (27%), Gaps = 2/51 (3%)
Query: 329 ENDCGDYSDETGCVNVTCSLSQFACENGRCVPSTWKCDSENDCGDGSDEGD 379
+ C NV + QFA +C + G D D
Sbjct: 159 GHPCTRTPHFLRIQNVEVNAGQFA--TFQCSAIGRTVAGDRLWLQGIDVRD 207
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 28.1 bits (63), Expect = 3.5
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 257 QSPNPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCN 303
+ C NG C+ C S C+C GYRL+ + +C
Sbjct: 83 ELDATCNIKNGRCKQFCKTGADSK----VLCSCTTGYRLAPDQKSCK 125
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 28.6 bits (64), Expect = 3.5
Identities = 21/116 (18%), Positives = 33/116 (28%), Gaps = 12/116 (10%)
Query: 260 NPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQPTCAPGEFQCASGR- 318
C +NG C+ C + S C+C GY L+ NG C P + C
Sbjct: 82 KLCSLDNGDCDQFCHEEQNS-----VVCSCARGYTLADNGKACIP--TGP--YPCGKQTL 132
Query: 319 CVPSTFKCDAENDCGDYSDETGCVNVTCSLSQFACENGRCV--PSTWKCDSENDCG 372
A + G+ D + + T +N+
Sbjct: 133 ERRKRSVAQATSSSGEAPDSITWKPYDAADLDPTENPFDLLDFNQTQPERGDNNLT 188
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein
of unknown function structural genomics; HET: MSE; 1.70A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 409
Score = 28.4 bits (63), Expect = 5.3
Identities = 6/88 (6%), Positives = 18/88 (20%), Gaps = 3/88 (3%)
Query: 400 LTNPTDLALDPTSGLMFVADS--NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLF 457
+A + + ++ ++D ++ V D
Sbjct: 130 FKYMWGIAAVG-NNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRVYSI 188
Query: 458 WCDNLLDYIETVDYEGKNRFLILRGSQN 485
+ + G I +
Sbjct: 189 GWEGTHTVYVYMKASGWAPTRIGQLGST 216
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.00A {Escherichia coli} SCOP:
b.69.11.1
Length = 343
Score = 28.1 bits (63), Expect = 6.2
Identities = 12/80 (15%), Positives = 26/80 (32%), Gaps = 6/80 (7%)
Query: 401 TNPTDLALDPTSGLMFVA--DSNQI--LRTNMDGTMAMSIVSEAAYKASGVALDINAKRL 456
+ T ++ D +FV ++ + R + + V E + + + L
Sbjct: 84 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTL 143
Query: 457 FWCDNLLDYIET--VDYEGK 474
+ D I V +G
Sbjct: 144 WVPALKQDRICLFTVSDDGH 163
>3s5u_A Putative uncharacterized protein; crispr, crispr adaptation
mechanism, NEW spacer aquisition, binding, DNA binding
protein; 2.70A {Enterococcus faecalis}
Length = 220
Score = 27.6 bits (61), Expect = 7.5
Identities = 8/39 (20%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 442 YKASGVALDINAKRLFWCDNLLDYIETVDYEGKNRFLIL 480
+KA G+ ++ + +F + +++ + Y K + LI
Sbjct: 131 FKALGIKIETTSDTIF--EKVMEITQVHRYLSKKKLLIF 167
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 26.9 bits (60), Expect = 8.8
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 262 CGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCN 303
C +NG C+ C + S C+C GY L+ NG C
Sbjct: 84 CSLDNGDCDQFCHEEQNS-----VVCSCARGYTLADNGKACI 120
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.452
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,252,986
Number of extensions: 440992
Number of successful extensions: 2322
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1526
Number of HSP's successfully gapped: 657
Length of query: 485
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 388
Effective length of database: 3,993,456
Effective search space: 1549460928
Effective search space used: 1549460928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.9 bits)