RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4900
(485 letters)
>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}
Length = 263
Score = 61.8 bits (149), Expect = 2e-11
Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 4/114 (3%)
Query: 376 DEGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVADSN----QILRTNMDGT 431
D E ++ + L NP + DP G ++ D N +I ++MDGT
Sbjct: 97 DSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT 156
Query: 432 MAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEGKNRFLILRGSQN 485
+ + +G+ D + +L W D E ++ R +L G Q
Sbjct: 157 NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQY 210
Score = 47.2 bits (111), Expect = 2e-06
Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 2/94 (2%)
Query: 394 IVLGSNLTNPTDLALDPTSGLMFVADSNQ--ILRTNMDGTMAMSIVSEAAYKASGVALDI 451
L LA D +++ D ++ I R ++ G +I+ + G+ALD
Sbjct: 29 AFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDH 88
Query: 452 NAKRLFWCDNLLDYIETVDYEGKNRFLILRGSQN 485
+ +FW D+ LD IE +G R ++
Sbjct: 89 LGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLV 122
Score = 39.9 bits (92), Expect = 4e-04
Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 4/107 (3%)
Query: 375 SDEGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVADS--NQILRTNMDGTM 432
+D + + + ++ +L +P +ALD +F DS ++I MDGT
Sbjct: 53 TDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ 112
Query: 433 AMSIVSEAAYKASGVALDINAKRLFWCDNLLD--YIETVDYEGKNRF 477
+ G+ D L+W D D IET +G NR
Sbjct: 113 RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR 159
Score = 34.9 bits (79), Expect = 0.018
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 6/68 (8%)
Query: 414 LMFVADSNQILRTNMDG-----TMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIET 468
L+F A + +I R ++ T A + + A G+A D K ++W D I
Sbjct: 4 LLF-AQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGR 62
Query: 469 VDYEGKNR 476
G
Sbjct: 63 ASLHGGEP 70
>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 54.7 bits (132), Expect = 8e-11
Identities = 22/38 (57%), Positives = 26/38 (68%)
Query: 306 TCAPGEFQCASGRCVPSTFKCDAENDCGDYSDETGCVN 343
TC P EFQC+ G C+ + +CD E DC D SDE GCVN
Sbjct: 2 TCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVN 39
Score = 52.0 bits (125), Expect = 6e-10
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 96 CHVGQFKCANSLCIPVSYHCDGYRDCIDGSDETNCTS 132
C +F+C++ CI S CD DC D SDE C +
Sbjct: 3 CRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVN 39
Score = 49.3 bits (118), Expect = 6e-09
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 345 TCSLSQFACENGRCVPSTWKCDSENDCGDGSDE 377
TC +F C +G C+ + +CD E DC D SDE
Sbjct: 2 TCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDE 34
Score = 44.3 bits (105), Expect = 3e-07
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 55 SCDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDEEKC 91
+C D+F+C++G CI +C+ DC D SDE C
Sbjct: 2 TCRPDEFQCSDGN-CIHGSRQCDREYDCKDMSDEVGC 37
Score = 39.3 bits (92), Expect = 2e-05
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 12 CSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGC 48
C P +F+C G CI ++CD YDC++ DE GC
Sbjct: 3 CRPDEFQCS--DGNCIHGSRQCDREYDCKDMSDEVGC 37
Score = 35.4 bits (82), Expect = 5e-04
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Query: 135 CPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEE 173
C ++F C G CI ++ CD DC+D +DE
Sbjct: 3 CRPDEFQCSDG------NCIHGSRQCDREYDCKDMSDEV 35
>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 52.4 bits (126), Expect = 5e-10
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 306 TCAPGEFQCASGRCVPSTFKCDAENDCGDYSDETGC 341
TC+ EF+C G+C+ F CD++ DC D SDE C
Sbjct: 2 TCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASC 37
Score = 50.9 bits (122), Expect = 2e-09
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 96 CHVGQFKCANSLCIPVSYHCDGYRDCIDGSDETNC 130
C +F+C + CI + CD RDC+DGSDE +C
Sbjct: 3 CSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASC 37
Score = 50.1 bits (120), Expect = 3e-09
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 345 TCSLSQFACENGRCVPSTWKCDSENDCGDGSDEGD 379
TCS ++F C +G+C+ + CDS+ DC DGSDE
Sbjct: 2 TCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEAS 36
Score = 45.1 bits (107), Expect = 2e-07
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 55 SCDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDEEKC 91
+C +FRC +G+ CI + C+ DC D SDE C
Sbjct: 2 TCSQAEFRCHDGK-CISRQFVCDSDRDCLDGSDEASC 37
Score = 43.5 bits (103), Expect = 8e-07
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 10 RKCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCP 49
+ CS +F C G CI + CD DC + DE CP
Sbjct: 1 KTCSQAEFRCH--DGKCISRQFVCDSDRDCLDGSDEASCP 38
Score = 36.2 bits (84), Expect = 3e-04
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Query: 135 CPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEE 173
C +F C G KCI + VCD +DC D +DE
Sbjct: 3 CSQAEFRCHDG------KCISRQFVCDSDRDCLDGSDEA 35
>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 45
Score = 51.7 bits (124), Expect = 1e-09
Identities = 20/38 (52%), Positives = 25/38 (65%)
Query: 305 PTCAPGEFQCASGRCVPSTFKCDAENDCGDYSDETGCV 342
P C PGEF CA+ RC+ +KCD +NDC D SDE +
Sbjct: 4 PQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPAL 41
Score = 49.4 bits (118), Expect = 6e-09
Identities = 18/36 (50%), Positives = 21/36 (58%)
Query: 96 CHVGQFKCANSLCIPVSYHCDGYRDCIDGSDETNCT 131
C G+F CANS CI + CDG DC+D SDE
Sbjct: 6 CQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPAL 41
Score = 49.4 bits (118), Expect = 6e-09
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 345 TCSLSQFACENGRCVPSTWKCDSENDCGDGSDE 377
C +FAC N RC+ WKCD +NDC D SDE
Sbjct: 5 QCQPGEFACANSRCIQERWKCDGDNDCLDNSDE 37
Score = 43.6 bits (103), Expect = 7e-07
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 55 SCDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDEEKCN 92
C +F CAN + CI + KC+ NDC DNSDE
Sbjct: 5 QCQPGEFACANSR-CIQERWKCDGDNDCLDNSDEAPAL 41
Score = 37.8 bits (88), Expect = 7e-05
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 10 RKCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGC 48
+C PG+F C + CI + +CDG DC + DE
Sbjct: 4 PQCQPGEFACA--NSRCIQERWKCDGDNDCLDNSDEAPA 40
Score = 37.5 bits (87), Expect = 1e-04
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 135 CPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEETVCC 177
C +F C +CI + CDG DC DN+DE C
Sbjct: 6 CQPGEFACANS------RCIQERWKCDGDNDCLDNSDEAPALC 42
>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 266
Score = 56.1 bits (134), Expect = 2e-09
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 3/113 (2%)
Query: 376 DEGDFCSEKTCAYFQFHAIVLGSNLTNPTDLALDPTSGLMFVADSNQ---ILRTNMDGTM 432
D + N + P + +DP G M+ D I + ++G
Sbjct: 95 DSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 154
Query: 433 AMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEGKNRFLILRGSQN 485
S+V+E +G+ LD+ + RL+W D+ L I ++D G NR IL +
Sbjct: 155 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKR 207
Score = 47.2 bits (111), Expect = 1e-06
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Query: 392 HAIVLGSNLTNPTDLALDPTSGLMFVADS--NQILRTNMDGTMAMS----IVSEAAYKAS 445
L NL N L + S ++ +D I T +D +S ++S
Sbjct: 21 EYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80
Query: 446 GVALDINAKRLFWCDNLLDYIETVDYEGKN 475
G+A+D ++W D++L + D +G
Sbjct: 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVK 110
Score = 43.0 bits (100), Expect = 4e-05
Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 399 NLTNPTDLALDPTSGLMFVADSNQ--ILRTNMDGTMAMSIVSEAAYKASGVALDINAKRL 456
N+ P + LD SG ++ DS I +++G +I+ + A +L + ++
Sbjct: 162 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKV 221
Query: 457 FWCDNLLDYIETVD-YEGKNRFLILRGSQN 485
FW D + + I + + G + L+ +
Sbjct: 222 FWTDIINEAIFSANRLTGSDVNLLAENLLS 251
Score = 39.5 bits (91), Expect = 6e-04
Identities = 7/61 (11%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 415 MFVADSNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIETVDYEGK 474
+F + +++ + +D + S++ + ++ + R++W D I + +
Sbjct: 4 LFFTNRHEVRKMTLDRSEYTSLIPNLRN-VVALDTEVASNRIYWSDLSQRMICSTQLDRA 62
Query: 475 N 475
+
Sbjct: 63 H 63
>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 50.5 bits (121), Expect = 2e-09
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 344 VTCSLSQFACENGRCVPSTWKCDSENDCGDGSDE 377
+TC + F C + C+P W CD++ DC DGSDE
Sbjct: 1 LTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDE 34
Score = 49.8 bits (119), Expect = 5e-09
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 306 TCAPGEFQCASGRCVPSTFKCDAENDCGDYSDETGCV 342
TC P FQC S C+P + CD + DC D SDE
Sbjct: 2 TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQR 38
Score = 47.8 bits (114), Expect = 2e-08
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 96 CHVGQFKCANSLCIPVSYHCDGYRDCIDGSDETNCT 131
C F+C +S CIP + CD DC DGSDE
Sbjct: 3 CGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQR 38
Score = 44.4 bits (105), Expect = 3e-07
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 54 LSCDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDEEKCN 92
L+C F+C + CI C+ DC D SDE
Sbjct: 1 LTCGPASFQCNSST-CIPQLWACDNDPDCEDGSDEWPQR 38
Score = 36.7 bits (85), Expect = 2e-04
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 133 IACPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEETVCC 177
+ C F C CIP+ CD DCED +DE C
Sbjct: 1 LTCGPASFQCNSS------TCIPQLWACDNDPDCEDGSDEWPQRC 39
Score = 36.3 bits (84), Expect = 3e-04
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 12 CSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGC 48
C P F+C+ CIP+ CD DC + DE
Sbjct: 3 CGPASFQCN--SSTCIPQLWACDNDPDCEDGSDEWPQ 37
>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 44
Score = 50.2 bits (120), Expect = 3e-09
Identities = 20/36 (55%), Positives = 27/36 (75%)
Query: 306 TCAPGEFQCASGRCVPSTFKCDAENDCGDYSDETGC 341
+C+ +F+C SGRC+P + CD +NDCGDYSDET
Sbjct: 4 SCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHA 39
Score = 49.8 bits (119), Expect = 5e-09
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 95 ACHVGQFKCANSLCIPVSYHCDGYRDCIDGSDETNCT 131
+C QFKC + CIP + CDG DC D SDET+
Sbjct: 4 SCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHAN 40
Score = 49.4 bits (118), Expect = 6e-09
Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 343 NVTCSLSQFACENGRCVPSTWKCDSENDCGDGSDE 377
+ +CS +QF C +GRC+P W CD +NDCGD SDE
Sbjct: 2 SHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDE 36
Score = 43.6 bits (103), Expect = 6e-07
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 55 SCDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDEEKCN 92
SC QF+C +G +CI C+ NDCGD SDE N
Sbjct: 4 SCSSTQFKCNSG-RCIPEHWTCDGDNDCGDYSDETHAN 40
Score = 38.2 bits (89), Expect = 6e-05
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 10 RKCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGC 48
CS F+C+ G CIP+ CDG DC + DE
Sbjct: 3 HSCSSTQFKCN--SGRCIPEHWTCDGDNDCGDYSDETHA 39
Score = 37.1 bits (86), Expect = 1e-04
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 134 ACPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEETVCC 177
+C + +F C G +CIP+ CDG DC D +DE C
Sbjct: 4 SCSSTQFKCNSG------RCIPEHWTCDGDNDCGDYSDETHANC 41
>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3
subunit {Common earthworm (Lumbricus terrestris) [TaxId:
6398]}
Length = 41
Score = 49.8 bits (119), Expect = 5e-09
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 305 PTCAPGEFQCAS--GRCVPSTFKCDAENDCGDYSDETGCV 342
P+C E QC +C+ F CD NDC + DE C
Sbjct: 1 PSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCT 40
Score = 46.7 bits (111), Expect = 6e-08
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 96 CHVGQFKCA--NSLCIPVSYHCDGYRDCIDGSDETNCT 131
C + +C + CI + CDG+ DC +G DE +CT
Sbjct: 3 CDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCT 40
Score = 44.8 bits (106), Expect = 3e-07
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 345 TCSLSQFAC--ENGRCVPSTWKCDSENDCGDGSDEGD 379
+C + C ++ +C+ + CD NDC +G DE D
Sbjct: 2 SCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKD 38
Score = 42.1 bits (99), Expect = 2e-06
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 55 SCDLDQFRCANG-QKCIDAKLKCNYHNDCGDNSDEEKCNF 93
SCD + +C +CI C+ HNDC + DE+ C
Sbjct: 2 SCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCTL 41
Score = 41.3 bits (97), Expect = 4e-06
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 12 CSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGC 48
C + +C CI K CDG+ DCRN +DE+ C
Sbjct: 3 CDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDC 39
Score = 36.3 bits (84), Expect = 2e-04
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Query: 135 CPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEETVCCDCSL 181
C ++ C G P+CI K VCDG DC + DE+ DC+L
Sbjct: 3 CDEHEHQC----GGDDPQCISKLFVCDGHNDCRNGEDEK----DCTL 41
>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 37
Score = 49.3 bits (118), Expect = 5e-09
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 96 CHVGQFKCANSLCIPVSYHCDGYRDCIDGSDETNC 130
C +F C + CI S+ CDG DC D SDE NC
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36
Score = 49.3 bits (118), Expect = 6e-09
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 307 CAPGEFQCASGRCVPSTFKCDAENDCGDYSDETGC 341
C+ EF C SG C+ S+++CD DC D SDE C
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36
Score = 47.4 bits (113), Expect = 3e-08
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 346 CSLSQFACENGRCVPSTWKCDSENDCGDGSDEGD 379
CS +F C +G C+ S+W+CD DC D SDE +
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEEN 35
Score = 42.8 bits (101), Expect = 1e-06
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 56 CDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDEEKC 91
C +F C +G+ CI + +C+ DC D SDEE C
Sbjct: 2 CSAFEFHCLSGE-CIHSSWRCDGGPDCKDKSDEENC 36
Score = 38.6 bits (90), Expect = 4e-05
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 12 CSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGC 48
CS +F C G CI RCDG DC+++ DEE C
Sbjct: 2 CSAFEFHCL--SGECIHSSWRCDGGPDCKDKSDEENC 36
Score = 34.7 bits (80), Expect = 9e-04
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 135 CPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEE 173
C +F C G +CI + CDG DC+D +DEE
Sbjct: 2 CSAFEFHCLSG------ECIHSSWRCDGGPDCKDKSDEE 34
>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 44
Score = 49.0 bits (117), Expect = 8e-09
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 341 CVNVTCSLSQFACENGRCVPSTWKCDSENDCGDGSDE 377
V C ++F C++G+C+ W CD +C DGSDE
Sbjct: 3 AVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDE 39
Score = 48.7 bits (116), Expect = 1e-08
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 96 CHVGQFKCANSLCIPVSYHCDGYRDCIDGSDETNCT 131
C +F+C + CI + CDG +C DGSDE+ T
Sbjct: 8 CERNEFQCQDGKCISYKWVCDGSAECQDGSDESQET 43
Score = 48.3 bits (115), Expect = 2e-08
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 306 TCAPGEFQCASGRCVPSTFKCDAENDCGDYSDETGCV 342
C EFQC G+C+ + CD +C D SDE+
Sbjct: 7 RCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQET 43
Score = 42.5 bits (100), Expect = 2e-06
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 50 ATTGLSCDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDEEKCN 92
+ G C+ ++F+C +G+ CI K C+ +C D SDE +
Sbjct: 2 SAVGDRCERNEFQCQDGK-CISYKWVCDGSAECQDGSDESQET 43
Score = 36.3 bits (84), Expect = 3e-04
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 11 KCSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGC 48
+C +F+C G CI CDG +C++ DE
Sbjct: 7 RCERNEFQCQ--DGKCISYKWVCDGSAECQDGSDESQE 42
Score = 35.2 bits (81), Expect = 6e-04
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 135 CPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEETVCC 177
C N+F C G KCI VCDG +C+D +DE C
Sbjct: 8 CERNEFQCQDG------KCISYKWVCDGSAECQDGSDESQETC 44
>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 42
Score = 48.3 bits (115), Expect = 1e-08
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 305 PTCAPGEFQC-ASGRCVPSTFKCDAENDCGDYSDETGCVNV 344
C EFQC G C+P ++CD + DC D SDE C V
Sbjct: 2 GGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCEGV 42
Score = 47.9 bits (114), Expect = 2e-08
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 96 CHVGQFKCANS-LCIPVSYHCDGYRDCIDGSDETNCTSI 133
CH +F+C LCIP+ + CDG DC+D SDE +C +
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCEGV 42
Score = 46.0 bits (109), Expect = 9e-08
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 55 SCDLDQFRCANGQKCIDAKLKCNYHNDCGDNSDEEKCN 92
C D+F+C CI + +C+ DC D+SDE+ C
Sbjct: 3 GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCE 40
Score = 44.8 bits (106), Expect = 3e-07
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 345 TCSLSQFACE-NGRCVPSTWKCDSENDCGDGSDE 377
C +F C +G C+P W+CD + DC D SDE
Sbjct: 3 GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE 36
Score = 38.6 bits (90), Expect = 3e-05
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 12 CSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGCP 49
C +F+C G+CIP RCDG DC + DE+ C
Sbjct: 4 CHTDEFQC-RLDGLCIPLRWRCDGDTDCMDSSDEKSCE 40
Score = 35.6 bits (82), Expect = 5e-04
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 135 CPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEE 173
C ++F C + CIP CDG DC D++DE+
Sbjct: 4 CHTDEFQCRLDG-----LCIPLRWRCDGDTDCMDSSDEK 37
>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 44
Score = 47.9 bits (114), Expect = 2e-08
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 340 GCVNVTCSLSQFACENGRCVPSTWKCDSENDCGDGSDE 377
G V + ++F C +G C+ C+ DC D SDE
Sbjct: 1 GNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDE 38
Score = 45.5 bits (108), Expect = 1e-07
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 303 NQPTC-APGEFQCASGRCVPSTFKCDAENDCGDYSDETGC 341
N C P +F+C SG C+ C+ DC D+SDE
Sbjct: 2 NVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIK 41
Score = 44.8 bits (106), Expect = 3e-07
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 92 NFTACH-VGQFKCANSLCIPVSYHCDGYRDCIDGSDETNCT 131
N T C +FKC + CI + C+ RDC D SDE
Sbjct: 2 NVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKE 42
Score = 39.4 bits (92), Expect = 2e-05
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 59 DQFRCANGQKCIDAKLKCNYHNDCGDNSDEEKCN 92
++F+C +G +CI CN DC D SDE
Sbjct: 10 NKFKCHSG-ECITLDKVCNMARDCRDWSDEPIKE 42
Score = 32.8 bits (75), Expect = 0.005
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 129 NCTSIACPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEETVCC 177
N T PN KF C G +CI +VC+ +DC D +DE C
Sbjct: 2 NVTLCEGPN-KFKCHSG------ECITLDKVCNMARDCRDWSDEPIKEC 43
Score = 32.8 bits (75), Expect = 0.005
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 12 CSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGC 48
P F+C G CI DK C+ DCR+ DE
Sbjct: 7 EGPNKFKCH--SGECITLDKVCNMARDCRDWSDEPIK 41
>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 41
Score = 47.1 bits (112), Expect = 4e-08
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 342 VNVTCSLSQFACE--NGRCVPSTWKCDSENDCGDGSDE 377
++VTC F+C RC+P W+CD + DC +GSDE
Sbjct: 1 LSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE 38
Score = 47.1 bits (112), Expect = 4e-08
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 306 TCAPGEFQCA--SGRCVPSTFKCDAENDCGDYSDETGC 341
TC G+F C RC+P ++CD + DC + SDE GC
Sbjct: 4 TCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 41
Score = 44.4 bits (105), Expect = 3e-07
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 94 TACHVGQFKCA--NSLCIPVSYHCDGYRDCIDGSDETNC 130
C G F C + CIP + CDG DC +GSDE C
Sbjct: 3 VTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 41
Score = 42.9 bits (101), Expect = 1e-06
Identities = 19/37 (51%), Positives = 21/37 (56%)
Query: 12 CSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGC 48
C GDF C CIP+ RCDG DC N DE+GC
Sbjct: 5 CKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 41
Score = 42.1 bits (99), Expect = 2e-06
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 54 LSCDLDQFRCANG-QKCIDAKLKCNYHNDCGDNSDEEKC 91
++C F C +CI +C+ DC + SDE+ C
Sbjct: 3 VTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 41
Score = 37.9 bits (88), Expect = 7e-05
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 132 SIACPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEE 173
S+ C + F C G +CIP+ CDG+ DC++ +DE+
Sbjct: 2 SVTCKSGDFSC----GGRVNRCIPQFWRCDGQVDCDNGSDEQ 39
>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail
(Coturnix coturnix) [TaxId: 9091]}
Length = 42
Score = 45.3 bits (107), Expect = 2e-07
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 306 TCAPGEFQCA-----SGRCVPSTFKCDAENDCGDYSDETGC 341
+C PG+F+C+ G C P + CD DC D DE GC
Sbjct: 1 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 41
Score = 43.4 bits (102), Expect = 8e-07
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 95 ACHVGQFKCANSL-----CIPVSYHCDGYRDCIDGSDETNC 130
+C GQF+C+ C P + CDG+ DC DG DE C
Sbjct: 1 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 41
Score = 42.6 bits (100), Expect = 1e-06
Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 345 TCSLSQFACEN-----GRCVPSTWKCDSENDCGDGSDE 377
+C QF C G C P W CD DC DG DE
Sbjct: 1 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 38
Score = 39.9 bits (93), Expect = 1e-05
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 55 SCDLDQFRCANGQ----KCIDAKLKCNYHNDCGDNSDEEKC 91
SC QFRC+ +C C+ H DC D DE C
Sbjct: 1 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 41
Score = 38.0 bits (88), Expect = 7e-05
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 12 CSPGDFECD---PPHGICIPKDKRCDGYYDCRNRKDEEGC 48
C PG F C HG C P+D CDG+ DC + +DE GC
Sbjct: 2 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 41
Score = 35.6 bits (82), Expect = 5e-04
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 134 ACPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEE 173
+CP +F C +C P+ +CDG DC+D DE
Sbjct: 1 SCPPGQFRCSEPPGAHG-ECYPQDWLCDGHPDCDDGRDEW 39
>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 44.8 bits (106), Expect = 2e-07
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 307 CAPGEFQCASG--RCVPSTFKCDAENDCGDYSDETGCVN 343
C E C + +C+P +++CD ENDC DE C N
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCGN 39
Score = 44.1 bits (104), Expect = 4e-07
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 96 CHVGQFKCAN--SLCIPVSYHCDGYRDCIDGSDETNCTS 132
C + + C + CIPVS+ CDG DC G DE NC +
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCGN 39
Score = 41.8 bits (98), Expect = 3e-06
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 346 CSLSQFACENG--RCVPSTWKCDSENDCGDGSDE 377
C + + +C +C+P +W+CD ENDC G DE
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 34
Score = 41.8 bits (98), Expect = 3e-06
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 56 CDLDQFRCANG-QKCIDAKLKCNYHNDCGDNSDEEKC 91
C + + C +CI +C+ NDC DEE C
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37
Score = 41.4 bits (97), Expect = 4e-06
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 12 CSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGC 48
C + C CIP RCDG DC + +DEE C
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37
Score = 36.0 bits (83), Expect = 3e-04
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 135 CPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEE 173
C ++ C +CIP + CDG DC+ DEE
Sbjct: 1 CRIHEISC----GAHSTQCIPVSWRCDGENDCDSGEDEE 35
>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common
earthworm (Lumbricus terrestris) [TaxId: 6398]}
Length = 42
Score = 42.5 bits (100), Expect = 2e-06
Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 306 TCAPGEFQCA--SGRCVPSTFKCDAENDCGDYSDETGCV 342
C E +C C+ CD E DC D SDE
Sbjct: 2 HCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPET 40
Score = 42.2 bits (99), Expect = 2e-06
Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 345 TCSLSQFACEN--GRCVPSTWKCDSENDCGDGSDE 377
C + C C+ CD E DC DGSDE
Sbjct: 2 HCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDE 36
Score = 41.4 bits (97), Expect = 4e-06
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 96 CHVGQFKCANSL--CIPVSYHCDGYRDCIDGSDETNCT 131
C + +C + CI CDG +DC DGSDE T
Sbjct: 3 CDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPET 40
Score = 39.8 bits (93), Expect = 2e-05
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 56 CDLDQFRCANGQ-KCIDAKLKCNYHNDCGDNSDEEKCN 92
CD + C +CI L C+ DC D SDE+
Sbjct: 3 CDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPET 40
Score = 37.9 bits (88), Expect = 8e-05
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 12 CSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGC 48
C + EC CI CDG DCR+ DE+
Sbjct: 3 CDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPE 39
Score = 37.1 bits (86), Expect = 1e-04
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 135 CPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEETVCC 177
C ++ C G P+CI CDG KDC D +DE+ C
Sbjct: 3 CDEHESEC----RGDVPECIHDLLFCDGEKDCRDGSDEDPETC 41
>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2
subunit {Common earthworm (Lumbricus terrestris) [TaxId:
6398]}
Length = 41
Score = 42.2 bits (99), Expect = 2e-06
Identities = 12/38 (31%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 307 CAPGEFQCA--SGRCVPSTFKCDAENDCGDYSDETGCV 342
C FQC C+ CD DC + DE V
Sbjct: 2 CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDV 39
Score = 41.8 bits (98), Expect = 3e-06
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 96 CHVGQFKCANS--LCIPVSYHCDGYRDCIDGSDETNCT 131
C F+C + CI CDG++DC + DE
Sbjct: 2 CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDV 39
Score = 41.0 bits (96), Expect = 5e-06
Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 346 CSLSQFACEN--GRCVPSTWKCDSENDCGDGSDE 377
C F C C+ CD DC + DE
Sbjct: 2 CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDE 35
Score = 38.7 bits (90), Expect = 3e-05
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 56 CDLDQFRCANG-QKCIDAKLKCNYHNDCGDNSDEEKCN 92
C+ F+C Q+CI L C+ H DC + DE+
Sbjct: 2 CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDV 39
Score = 37.9 bits (88), Expect = 7e-05
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 12 CSPGDFECDPPHGICIPKDKRCDGYYDCRNRKDEEGC 48
C F+C CI CDG+ DC N DE+
Sbjct: 2 CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPD 38
Score = 37.5 bits (87), Expect = 8e-05
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 135 CPNNKFLCPMGAAGGKPKCIPKAQVCDGRKDCEDNADEETVCCD 178
C F C G + +CI VCDG KDC + DE+ CD
Sbjct: 2 CEKRTFQC----GGNEQECISDLLVCDGHKDCHNAHDEDPDVCD 41
>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL)
receptor, different EGF domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 50
Score = 41.9 bits (98), Expect = 3e-06
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 260 NPCGSNNGGCEHMCIITRASGN-ALGYKCACDIGYRLSVNGNNC 302
+NGGC+++C+ + + CAC G L+ + +C
Sbjct: 5 ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 48
Score = 25.3 bits (55), Expect = 2.7
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Query: 176 CCDCSLLN--CEFTCQASPT------GGVCQCPEGQKVANDSRTCL 213
C +L N C++ C +P C CP+G +A D R+CL
Sbjct: 4 CERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL 49
>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId:
9606]}
Length = 57
Score = 39.8 bits (93), Expect = 2e-05
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 8/53 (15%)
Query: 262 CGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQPTCAPGEFQC 314
C NG CE C + + C+C GYRL+ N +C F C
Sbjct: 3 CNIKNGRCEQFCKNSADN----KVVCSCTEGYRLAENQKSCE----PAVPFPC 47
Score = 26.7 bits (59), Expect = 0.96
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 179 CSLLN--CEFTCQASPTGG-VCQCPEGQKVANDSRTC 212
C++ N CE C+ S VC C EG ++A + ++C
Sbjct: 3 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSC 39
>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 39.8 bits (93), Expect = 2e-05
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 8/53 (15%)
Query: 262 CGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQPTCAPGEFQC 314
C + NGGCE C + C C GY L +G +C E+ C
Sbjct: 2 CVNENGGCEQYCSDHTGT----KRSCRCHEGYSLLADGVSCT----PTVEYPC 46
Score = 26.3 bits (58), Expect = 1.5
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
Query: 179 CSLLN--CEFTCQASPTGG-VCQCPEGQKVANDSRTC 212
C N CE C C+C EG + D +C
Sbjct: 2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 38
>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human
(Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 39.4 bits (92), Expect = 3e-05
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 9/53 (16%)
Query: 262 CGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCNQPTCAPGEFQC 314
C +NG C+ C + S C+C GY L+ NG C G + C
Sbjct: 3 CSLDNGDCDQFCHEEQNS-----VVCSCARGYTLADNGKAC----IPTGPYPC 46
Score = 28.2 bits (63), Expect = 0.24
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 179 CSLLN--CEFTCQASPTGGVCQCPEGQKVANDSRTC 212
CSL N C+ C VC C G +A++ + C
Sbjct: 3 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 38
>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin
IIa) {Human (Homo sapiens) [TaxId: 9606]}
Length = 50
Score = 38.2 bits (89), Expect = 8e-05
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 262 CGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNC 302
C +NGGC H C+ +C+C GY+L + C
Sbjct: 2 CSLDNGGCTHYCLEEVGW-----RRCSCAPGYKLGDDLLQC 37
Score = 30.5 bits (69), Expect = 0.039
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 178 DCSLLN--CEFTCQASPTGGVCQCPEGQKVANDSRTC 212
+CSL N C C C C G K+ +D C
Sbjct: 1 NCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQC 37
>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus)
[TaxId: 9913]}
Length = 51
Score = 37.5 bits (87), Expect = 1e-04
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 262 CGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNC 302
C +NGGC+ C R+ +C+C GY L + +C
Sbjct: 1 CSLDNGGCDQFCREERSE-----VRCSCAHGYVLGDDSKSC 36
Score = 28.3 bits (63), Expect = 0.24
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 183 NCEFTCQASPTGGVCQCPEGQKVANDSRTC 212
C+ C+ + C C G + +DS++C
Sbjct: 7 GCDQFCREERSEVRCSCAHGYVLGDDSKSC 36
>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL)
receptor, different EGF domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 40
Score = 35.9 bits (83), Expect = 3e-04
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 260 NPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNC 302
N C NNGGC H+C + Y+C C G++L C
Sbjct: 3 NECLDNNGGCSHVCNDLKIG-----YECLCPDGFQLV-AQRRC 39
Score = 24.3 bits (53), Expect = 5.5
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 183 NCEFTCQASPTGGVCQCPEGQKVANDSRTC 212
C C G C CP+G ++ R C
Sbjct: 11 GCSHVCNDLKIGYECLCPDGFQLV-AQRRC 39
>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor,
different EGF domains {Human (Homo sapiens) [TaxId:
9606]}
Length = 41
Score = 34.3 bits (79), Expect = 0.001
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
Query: 260 NPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNC 302
+ C + C +C+ YKC C+ G++L + C
Sbjct: 2 DEC-QDPDTCSQLCVNLEGG-----YKCQCEEGFQLDPHTKAC 38
Score = 27.8 bits (62), Expect = 0.30
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 183 NCEFTCQASPTGGVCQCPEGQKVANDSRTC 212
C C G CQC EG ++ ++ C
Sbjct: 9 TCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 38
>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 33.3 bits (76), Expect = 0.003
Identities = 10/43 (23%), Positives = 13/43 (30%), Gaps = 5/43 (11%)
Query: 260 NPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNC 302
N C C+ T S Y C C + L+ C
Sbjct: 4 NECLDPTTCISGNCVNTPGS-----YICDCPPDFELNPTRVGC 41
Score = 24.5 bits (53), Expect = 5.6
Identities = 7/36 (19%), Positives = 11/36 (30%)
Query: 177 CDCSLLNCEFTCQASPTGGVCQCPEGQKVANDSRTC 212
C C +P +C CP ++ C
Sbjct: 6 CLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGC 41
>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated
serine protease 2, MASP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 45
Score = 32.2 bits (73), Expect = 0.009
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 8/47 (17%)
Query: 260 NPCGSNNG---GCEHMCIITRASGNALGYKCACDIGYRLSVNGNNCN 303
+ C G C+H C + C+C GY L N C+
Sbjct: 2 DECQVAPGEAPTCDHHCHNHLGG-----FYCSCRAGYVLHRNKRTCS 43
Score = 27.9 bits (62), Expect = 0.26
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 184 CEFTCQASPTGGVCQCPEGQKVANDSRTC 212
C+ C G C C G + + RTC
Sbjct: 14 CDHHCHNHLGGFYCSCRAGYVLHRNKRTC 42
>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo
sapiens) [TaxId: 9606]}
Length = 42
Score = 31.8 bits (72), Expect = 0.012
Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 5/38 (13%)
Query: 265 NNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNC 302
+ C H C Y C+C Y L + NC
Sbjct: 7 VDVPCSHFCNNFIGG-----YFCSCPPEYFLHDDMKNC 39
Score = 29.4 bits (66), Expect = 0.075
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 176 CCDCSLLNCEFTCQASPTGGVCQCPEGQKVANDSRTC 212
C D + C C G C CP + +D + C
Sbjct: 3 CTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNC 39
>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated
serine protease 2, MASP2 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 45
Score = 31.4 bits (71), Expect = 0.015
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 8/47 (17%)
Query: 260 NPCGSNNGG---CEHMCIITRASGNALGYKCACDIGYRLSVNGNNCN 303
+ C ++ G C+H C Y C+C +GY L N + C+
Sbjct: 2 DECRTSLGDSVPCDHYCHNYLGG-----YYCSCRVGYILHQNKHTCS 43
Score = 27.6 bits (61), Expect = 0.45
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 184 CEFTCQASPTGGVCQCPEGQKVANDSRTC 212
C+ C G C C G + + TC
Sbjct: 14 CDHYCHNYLGGYYCSCRVGYILHQNKHTC 42
>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 30.1 bits (68), Expect = 0.043
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 260 NPCGSNNGGCE-HMCIITRASGNALGYKCACDIGYRLSVNGNNCN 303
+ C G C+ CI T S ++C C GY L+ + C+
Sbjct: 4 DECQELPGLCQGGKCINTFGS-----FQCRCPTGYYLNEDTRVCD 43
Score = 24.0 bits (52), Expect = 7.0
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 184 CEFTCQASPTGGVCQCPEGQKVANDSRTC 212
C + C+CP G + D+R C
Sbjct: 14 QGGKCINTFGSFQCRCPTGYYLNEDTRVC 42
>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens)
[TaxId: 9606]}
Length = 53
Score = 29.6 bits (66), Expect = 0.092
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 257 QSPNPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNC 302
+S + C+H+C Y C+C GY L + ++C
Sbjct: 10 RSKSGEEDPQPQCQHLCHNYVGG-----YFCSCRPGYELQEDRHSC 50
Score = 29.2 bits (65), Expect = 0.14
Identities = 9/43 (20%), Positives = 14/43 (32%)
Query: 170 ADEETVCCDCSLLNCEFTCQASPTGGVCQCPEGQKVANDSRTC 212
A + C+ C G C C G ++ D +C
Sbjct: 8 ASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSC 50
>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 42
Score = 29.0 bits (65), Expect = 0.11
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 260 NPCGSNNGGCEH-MCIITRASGNALGYKCACDIGYRLSVNGNNC 302
+ C + C +C T S Y+C C G++LS N + C
Sbjct: 3 DECQRDPLLCRGGVCHNTEGS-----YRCECPPGHQLSPNISAC 41
Score = 24.0 bits (52), Expect = 6.4
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 184 CEFTCQASPTGGVCQCPEGQKVANDSRTCL 213
C + C+CP G +++ + C+
Sbjct: 13 RGGVCHNTEGSYRCECPPGHQLSPNISACI 42
>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 40
Score = 27.0 bits (60), Expect = 0.55
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 6/40 (15%)
Query: 264 SNNGGCEHMCIITRASGNALGYKCACDIGYRLS-VNGNNC 302
N G C +C + ++C C L+ G +C
Sbjct: 6 ENGGFCSGVCHNLPGT-----FECICGPDSALAGQIGTDC 40
>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 26.3 bits (58), Expect = 0.96
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Query: 260 NPCGSNNGGCEHMCIITRASGNALGYKCACDIGYRLSVNGNNC 302
+ C + CI T S Y+C C GY L GN C
Sbjct: 6 DECKEPDVCKHGQCINTDGS-----YRCECPFGYIL--AGNEC 41
>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6
{Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 28.6 bits (63), Expect = 1.4
Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 287 CACDIGYRLSVNGNNC-NQPTCAPGEFQCASGRC 319
C G +LS + + C + C P +
Sbjct: 2 CDGRGGLKLSQDMDTCEDILPCVPFSVAKSVKSL 35
>d1olza2 b.69.12.1 (A:3-480) Semaphorin 4d {Human (Homo sapiens)
[TaxId: 9606]}
Length = 478
Score = 28.5 bits (63), Expect = 2.0
Identities = 7/40 (17%), Positives = 14/40 (35%), Gaps = 4/40 (10%)
Query: 390 QFHAIVLGSNLTNPTDLALDPTSGLMFVADSNQILRTNMD 429
QFH ++ N + L L +++ + N
Sbjct: 18 QFHE----PDIYNYSALLLSEDKDTLYIGAREAVFAVNAL 53
>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 44
Score = 24.8 bits (54), Expect = 3.6
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 7/45 (15%)
Query: 260 NPCGSNNGGCEH-MCIITRASGNALGYKCACDIGYRLS-VNGNNC 302
+ C + C C+ T ++C CD GY + NC
Sbjct: 4 DECRISPDLCGRGQCVNTPGD-----FECKCDEGYESGFMMMKNC 43
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.452
Gapped
Lambda K H
0.267 0.0607 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,877,349
Number of extensions: 97772
Number of successful extensions: 634
Number of sequences better than 10.0: 1
Number of HSP's gapped: 532
Number of HSP's successfully gapped: 222
Length of query: 485
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 396
Effective length of database: 1,185,626
Effective search space: 469507896
Effective search space used: 469507896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.2 bits)