BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4903
(73 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6
Length = 616
Score = 36.6 bits (83), Expect = 0.003, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 27 QILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYI 71
+I R MDG+ I++ Y +G+ LD ++L+W D L++I
Sbjct: 143 KIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFI 187
Score = 32.0 bits (71), Expect = 0.079, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 28 ILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
I R+ +DG+ + +V+ G+A+D A+ L+W D D IE
Sbjct: 365 IRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIE 409
Score = 29.6 bits (65), Expect = 0.42, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 27 QILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
+I R +DG+ + +V+ + +G+ALD + +++W D D IE
Sbjct: 451 KIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIE 496
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 10/43 (23%), Positives = 26/43 (60%)
Query: 23 ADSNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCD 65
+++N+I +N+DG++ + + + +ALD ++ ++W D
Sbjct: 95 SETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTD 137
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 25 SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCD 65
+++I T ++GTM ++SE + + LD ++W D
Sbjct: 405 TDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTD 445
>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2
pdb|3S94|B Chain B, Crystal Structure Of Lrp6-E1e2
Length = 619
Score = 36.6 bits (83), Expect = 0.003, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 27 QILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYI 71
+I R MDG+ I++ Y +G+ LD ++L+W D L++I
Sbjct: 151 KIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFI 195
Score = 32.0 bits (71), Expect = 0.079, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 28 ILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
I R+ +DG+ + +V+ G+A+D A+ L+W D D IE
Sbjct: 373 IRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIE 417
Score = 29.6 bits (65), Expect = 0.42, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 27 QILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
+I R +DG+ + +V+ + +G+ALD + +++W D D IE
Sbjct: 459 KIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIE 504
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 10/43 (23%), Positives = 26/43 (60%)
Query: 23 ADSNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCD 65
+++N+I +N+DG++ + + + +ALD ++ ++W D
Sbjct: 103 SETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTD 145
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 25 SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCD 65
+++I T ++GTM ++SE + + LD ++W D
Sbjct: 413 TDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTD 453
>pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Dkk1 Peptide
pdb|3SOV|A Chain A, The Structure Of A Beta Propeller Domain In Complex With
Peptide S
Length = 318
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 27 QILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYI 71
+I R MDG+ I++ Y +G+ LD ++L+W D L++I
Sbjct: 146 KIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFI 190
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 10/43 (23%), Positives = 26/43 (60%)
Query: 23 ADSNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCD 65
+++N+I +N+DG++ + + + +ALD ++ ++W D
Sbjct: 98 SETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTD 140
>pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Fab
Length = 316
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 27 QILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYI 71
+I R MDG+ I++ Y +G+ LD ++L+W D L++I
Sbjct: 143 KIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFI 187
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 10/43 (23%), Positives = 26/43 (60%)
Query: 23 ADSNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCD 65
+++N+I +N+DG++ + + + +ALD ++ ++W D
Sbjct: 95 SETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTD 137
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 33.5 bits (75), Expect = 0.029, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 17 QALMFVADS--NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
+ L+F +D ++ILR N++G+ +VS G+A+D +L+W D+ IE
Sbjct: 127 RELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIE 184
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 10/43 (23%), Positives = 23/43 (53%)
Query: 23 ADSNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCD 65
++ +I ++MDG+ I + +G+ +D +R++W D
Sbjct: 222 GNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVD 264
>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4
pdb|3V64|D Chain D, Crystal Structure Of Agrin And Lrp4
Length = 349
Score = 33.5 bits (75), Expect = 0.029, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 17 QALMFVADS--NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
+ L+F +D ++ILR N++G+ +VS G+A+D +L+W D+ IE
Sbjct: 84 RELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIE 141
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 10/43 (23%), Positives = 23/43 (53%)
Query: 23 ADSNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCD 65
++ +I ++MDG+ I + +G+ +D +R++W D
Sbjct: 179 GNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVD 221
>pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex
Length = 267
Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 28 ILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
I R ++ G +I+ + G+ALD + +FW D+ LD IE
Sbjct: 60 IGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIE 104
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 30.8 bits (68), Expect = 0.22, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 27 QILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIET 73
+I + ++G S+V+E +G+ LD+ + RL+W D+ L I +
Sbjct: 266 KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 312
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 30.8 bits (68), Expect = 0.22, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 27 QILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIET 73
+I + ++G S+V+E +G+ LD+ + RL+W D+ L I +
Sbjct: 226 KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 272
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 30.8 bits (68), Expect = 0.22, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 27 QILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIET 73
+I + ++G S+V+E +G+ LD+ + RL+W D+ L I +
Sbjct: 538 KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 584
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 30.8 bits (68), Expect = 0.22, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 27 QILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIET 73
+I + ++G S+V+E +G+ LD+ + RL+W D+ L I +
Sbjct: 520 KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 566
>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56.
pdb|3S2K|B Chain B, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56
Length = 629
Score = 30.4 bits (67), Expect = 0.23, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 27 QILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIET 73
+I R MDG+ ++V +A+G+ +D +RL+W D + IE+
Sbjct: 145 KIDRAAMDGSERTTLVPNVG-RANGLTIDYAKRRLYWTDLDTNLIES 190
Score = 29.3 bits (64), Expect = 0.51, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 16 EQALMFVAD----SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYI 71
E+ M+ + S +I R +DGT + K +ALD +LFW D+ L I
Sbjct: 440 EKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRI 499
Query: 72 ET 73
E+
Sbjct: 500 ES 501
>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4
Length = 628
Score = 30.4 bits (67), Expect = 0.23, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 27 QILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIET 73
+I R MDG+ ++V +A+G+ +D +RL+W D + IE+
Sbjct: 147 KIDRAAMDGSERTTLVPNVG-RANGLTIDYAKRRLYWTDLDTNLIES 192
Score = 29.3 bits (64), Expect = 0.51, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 16 EQALMFVAD----SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYI 71
E+ M+ + S +I R +DGT + K +ALD +LFW D+ L I
Sbjct: 442 EKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRI 501
Query: 72 ET 73
E+
Sbjct: 502 ES 503
>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8V|B Chain B, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8Z|A Chain A, Crystal Structure Of Lrp6-E3e4
Length = 623
Score = 30.4 bits (67), Expect = 0.24, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 27 QILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIET 73
+I R MDG+ ++V +A+G+ +D +RL+W D + IE+
Sbjct: 152 KIDRAAMDGSERTTLVPNVG-RANGLTIDYAKRRLYWTDLDTNLIES 197
Score = 29.3 bits (64), Expect = 0.53, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 25 SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIET 73
S +I R +DGT + K +ALD +LFW D+ L IE+
Sbjct: 460 SPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIES 508
>pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
pdb|1IJQ|B Chain B, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
Length = 316
Score = 30.4 bits (67), Expect = 0.26, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 27 QILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIET 73
+I + ++G S+V+E +G+ LD+ + RL+W D+ L I +
Sbjct: 144 KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 190
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.130 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,676,216
Number of Sequences: 62578
Number of extensions: 42101
Number of successful extensions: 167
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 120
Number of HSP's gapped (non-prelim): 47
length of query: 73
length of database: 14,973,337
effective HSP length: 43
effective length of query: 30
effective length of database: 12,282,483
effective search space: 368474490
effective search space used: 368474490
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)