RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4903
(73 letters)
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 57.5 bits (138), Expect = 7e-12
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 19 LMFVADSNQ---ILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
M+ D I + ++G S+V+E +G+ LD+ + RL+W D+ L I
Sbjct: 215 FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS 271
Score = 39.8 bits (92), Expect = 1e-05
Identities = 8/49 (16%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 20 MFVADS--NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDN 66
++ DS + + G ++ E K + +D ++W D
Sbjct: 173 IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW 221
Score = 37.5 bits (86), Expect = 1e-04
Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 19 LMFVADSNQ--ILRTNMDGTMAMS----IVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
++ +D +Q I T +D +S ++S G+A+D ++W D++L +
Sbjct: 125 RIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVS 184
Score = 30.6 bits (68), Expect = 0.025
Identities = 9/50 (18%), Positives = 23/50 (46%)
Query: 23 ADSNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
+ + I +++G +I+ + A +L + ++FW D + + I
Sbjct: 265 SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIF 314
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 57.1 bits (137), Expect = 1e-11
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 19 LMFVADSNQ---ILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIET 73
++ D I ++MDG+ I + +G+ +D +R++W D IE
Sbjct: 215 TIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIER 272
Score = 40.5 bits (94), Expect = 9e-06
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 25 SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
++ILR N++G+ +VS G+A+D +L+W D+ IE
Sbjct: 137 LDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIE 184
Score = 38.6 bits (89), Expect = 4e-05
Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 20 MFVADS--NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCD 65
++ DS ++I N+DG ++ ++ K +AL ++W D
Sbjct: 173 LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTD 220
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 56.8 bits (136), Expect = 2e-11
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 19 LMFVADSNQ---ILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIET 73
M+ D I + ++G S+V+E +G+ LD+ + RL+W D+ L I +
Sbjct: 527 FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 584
Score = 39.8 bits (92), Expect = 2e-05
Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 20 MFVADS--NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCD 65
++ DS + + G ++ E K + +D ++W D
Sbjct: 485 IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTD 532
Score = 34.0 bits (77), Expect = 0.002
Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 4/65 (6%)
Query: 12 NRTREQALMFVADSNQILRTNMDGTMAMS----IVSEAAYKASGVALDINAKRLFWCDNL 67
+ I T +D +S ++S G+A+D ++W D++
Sbjct: 432 EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV 491
Query: 68 LDYIE 72
L +
Sbjct: 492 LGTVS 496
Score = 30.2 bits (67), Expect = 0.042
Identities = 8/43 (18%), Positives = 20/43 (46%)
Query: 23 ADSNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCD 65
+ + I +++G +I+ + A +L + ++FW D
Sbjct: 577 SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTD 619
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 56.0 bits (134), Expect = 3e-11
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 19 LMFVADSNQ---ILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIET 73
M+ D I + ++G S+V+E +G+ LD+ + RL+W D+ L I +
Sbjct: 509 FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 566
Score = 38.2 bits (88), Expect = 6e-05
Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 20 MFVADS--NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCD 65
++ DS + + G ++ E K + +D ++W D
Sbjct: 467 IYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTD 514
Score = 33.6 bits (76), Expect = 0.002
Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 4/65 (6%)
Query: 12 NRTREQALMFVADSNQILRTNMDGTMAMS----IVSEAAYKASGVALDINAKRLFWCDNL 67
+ I T +D +S ++S G+A+D ++W D++
Sbjct: 414 EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV 473
Query: 68 LDYIE 72
L +
Sbjct: 474 LGTVS 478
Score = 29.8 bits (66), Expect = 0.047
Identities = 8/43 (18%), Positives = 20/43 (46%)
Query: 23 ADSNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCD 65
+ + I +++G +I+ + A +L + ++FW D
Sbjct: 559 SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTD 601
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller,
EGF-like, structural protein; 2.30A {Mus musculus} SCOP:
b.68.5.1
Length = 267
Score = 52.9 bits (127), Expect = 3e-10
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 19 LMFVADSNQ----ILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
++ D N+ I ++MDGT + + +G+ D + +L W D E
Sbjct: 135 NLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE 192
Score = 46.4 bits (110), Expect = 7e-08
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 20 MFVADSNQ--ILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
++ D ++ I R ++ G +I+ + G+ALD + +FW D+ LD IE
Sbjct: 50 VYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIE 104
Score = 38.7 bits (90), Expect = 4e-05
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 20 MFVADS--NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCD 65
+F DS ++I MDGT + G+ D L+W D
Sbjct: 93 IFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTD 140
Score = 35.2 bits (81), Expect = 5e-04
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 5/58 (8%)
Query: 20 MFVADSNQILRTNMDGTMAMSIVSEAAYK-----ASGVALDINAKRLFWCDNLLDYIE 72
+ A + +I R ++ ++A G+A D K ++W D I
Sbjct: 4 LLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIG 61
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 48.7 bits (115), Expect = 1e-08
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 19 LMFVADSN---QILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
M+ D +I R +DG+ + +V+ + +G+ALD + +++W D D IE
Sbjct: 448 YMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIE 504
Score = 44.0 bits (103), Expect = 4e-07
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 20 MFVADSNQ--ILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
++ D I R+ +DG+ + +V+ G+A+D A+ L+W D D IE
Sbjct: 363 IYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIE 417
Score = 43.7 bits (102), Expect = 6e-07
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 19 LMFVADSNQ---ILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
M+ D + I R MDG+ I++ Y +G+ LD ++L+W D L++I
Sbjct: 140 FMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIH 196
Score = 41.3 bits (96), Expect = 4e-06
Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 20 MFVADS--NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCD 65
++ DS N+I +N+DG++ + + + +ALD ++ ++W D
Sbjct: 98 LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTD 145
Score = 39.0 bits (90), Expect = 2e-05
Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 13 RTREQALMFVADSNQILRTNM-DGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYI 71
L+ A+ + + +G +IV A+ V + ++W D + I
Sbjct: 5 HHHHAPLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAI 64
Score = 39.0 bits (90), Expect = 3e-05
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 20 MFVADSNQ--ILRTNMDGTMAMS-IVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
++ +D ++ I RT + T ++ +V G+A D ++L+W D+ + IE
Sbjct: 54 IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIE 109
Score = 37.1 bits (85), Expect = 1e-04
Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 20 MFVADS--NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDN 66
++ D+ ++I T ++GTM ++SE + + LD ++W D
Sbjct: 406 LYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDW 454
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 46.7 bits (110), Expect = 4e-08
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 20 MFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
++ D I R M+G+ +V G+A+D K L+W D + IE
Sbjct: 51 IYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIE 105
Score = 46.3 bits (109), Expect = 8e-08
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 19 LMFVADSNQ----ILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
M+ + + I R +DGT + K +ALD +LFW D+ L IE
Sbjct: 445 YMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIE 502
Score = 42.1 bits (98), Expect = 2e-06
Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 20 MFVADSNQ--ILRTNMDGTMAMSIVS------EAAYKASGVALDINAKRLFWCDNLLDYI 71
++ DS Q I + DG+ ++V + +++DI ++ ++W + I
Sbjct: 354 LYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVI 413
Query: 72 E 72
Sbjct: 414 N 414
Score = 40.9 bits (95), Expect = 6e-06
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 16 EQALMFVADSNQILRTNMDGT-MAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYI 71
+A + + I R +++ ++I +AS + D+ R++W D L I
Sbjct: 5 PEAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTI 61
Score = 40.6 bits (94), Expect = 7e-06
Identities = 6/48 (12%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 20 MFVADS--NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCD 65
++ N I T +DG ++ + V ++ +++ +
Sbjct: 403 IYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTN 450
Score = 37.9 bits (87), Expect = 6e-05
Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 20 MFVADS--NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDN 66
++ AD+ N+I + +DG +V + +ALD ++W +
Sbjct: 94 LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEW 142
Score = 36.7 bits (84), Expect = 2e-04
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 19 LMFVADSN---QILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIET 73
M+ + +I R MDG+ ++V A+G+ +D +RL+W D + IE+
Sbjct: 136 FMYWTEWGGKPKIDRAAMDGSERTTLVPNVGR-ANGLTIDYAKRRLYWTDLDTNLIES 192
Score = 27.8 bits (61), Expect = 0.27
Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 20 MFVADSNQILRTNMDGTMAMSIV--SEAAYKASGVALDINAKRLFWCDNLLDYI 71
+ + + I R +D + I+ + + D K+L+W D+ + I
Sbjct: 311 LLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMI 364
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 45.8 bits (108), Expect = 1e-07
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 19 LMFVADSNQ---ILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
M+ D I + ++G S+V+E +G+ LD+ + RL+W D+ L I
Sbjct: 133 FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS 189
Score = 41.6 bits (97), Expect = 3e-06
Identities = 8/55 (14%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 18 ALMFVADSNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
A +F + +++ + +D + S++ + ++ + R++W D I
Sbjct: 2 AYLFFTNRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMIC 55
Score = 39.7 bits (92), Expect = 1e-05
Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 20 MFVADS--NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCD 65
++ DS + + G ++ E K + +D ++W D
Sbjct: 91 IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTD 138
Score = 38.9 bits (90), Expect = 3e-05
Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 20 MFVADSNQ--ILRTNMDGTMAMS----IVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
++ +D +Q I T +D +S ++S G+A+D ++W D++L +
Sbjct: 44 IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVS 102
Score = 30.4 bits (68), Expect = 0.027
Identities = 8/43 (18%), Positives = 20/43 (46%)
Query: 23 ADSNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCD 65
+ + I +++G +I+ + A +L + ++FW D
Sbjct: 183 SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTD 225
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 45.6 bits (107), Expect = 1e-07
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 20 MFVADSNQ--ILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
+F +D ILR N++G+ +VS G+A+D +L+W D+ IE
Sbjct: 87 VFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIE 141
Score = 44.5 bits (104), Expect = 3e-07
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 19 LMFVADSNQ---ILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
++ D I ++MDG+ I + +G+ +D +R++W D IE
Sbjct: 172 TIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIE 228
Score = 42.6 bits (99), Expect = 2e-06
Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 20 MFVADS--NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCD 65
++ DS ++I N+DG ++ ++ K +AL ++W D
Sbjct: 130 LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTD 177
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 45.1 bits (106), Expect = 2e-07
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 19 LMFVADSNQ---ILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
M+ D + I R MDG+ I++ Y +G+ LD ++L+W D L++I
Sbjct: 135 FMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIH 191
Score = 41.2 bits (96), Expect = 4e-06
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 20 MFVADSNQ--ILRTNMDGTMAMS-IVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
++ +D ++ I RT + T ++ +V G+A D ++L+W D+ + IE
Sbjct: 49 IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIE 104
Score = 40.4 bits (94), Expect = 9e-06
Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 17 QALMFVADSNQILRTNM-DGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYI 71
L+ A+ + + +G +IV A+ V + ++W D + I
Sbjct: 4 APLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAI 59
Score = 37.4 bits (86), Expect = 1e-04
Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 20 MFVADS--NQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCD 65
++ DS N+I +N+DG++ + + + +ALD ++ ++W D
Sbjct: 93 LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTD 140
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 0.19
Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 10/36 (27%)
Query: 24 DSNQILRTNMDGTMAMSIVSEAAYKA-SGVALDINA 58
+ + + + ++ + Y S AL I A
Sbjct: 18 EKQALKK--LQASLKL-------YADDSAPALAIKA 44
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling
protein; HET: CIT; 1.86A {Mycobacterium tuberculosis}
SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A*
2q1x_A*
Length = 382
Score = 24.6 bits (54), Expect = 3.7
Identities = 8/28 (28%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 8 SSGENRTREQALMFVADSNQILRTNMDG 35
+ GE R+ + A + A ++ +L +M+G
Sbjct: 231 ARGEGRSLKAAEI--AINSPLLEASMEG 256
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding,
septation, cytoplasm, B.subtilis, cell cycle; HET: CIT;
1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A*
2rhl_A* 2rho_A*
Length = 382
Score = 24.2 bits (53), Expect = 4.8
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 8 SSGENRTREQALMFVADSNQILRTNMDG 35
++GENR E A A S+ +L +DG
Sbjct: 231 ATGENRAAEAAKK--AISSPLLEAAIDG 256
>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding,
cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A
{Staphylococcus aureus}
Length = 396
Score = 24.2 bits (53), Expect = 4.9
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 8 SSGENRTREQALMFVADSNQILRTNMDG 35
SSGENR E A A S+ +L T++ G
Sbjct: 237 SSGENRAVEAAKK--AISSPLLETSIVG 262
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding,
multigene family, septation, tubulin, filament, Z-ring,
GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga
maritima} SCOP: c.32.1.1 d.79.2.1
Length = 353
Score = 24.1 bits (53), Expect = 5.5
Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 8 SSGENRTREQALMFVADSNQILRTNMDG 35
GE+R RE A A ++++ ++
Sbjct: 243 GKGEHRAREAAKK--AMESKLIEHPVEN 268
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.130 0.364
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,020,355
Number of extensions: 45496
Number of successful extensions: 133
Number of sequences better than 10.0: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 51
Length of query: 73
Length of database: 6,701,793
Length adjustment: 43
Effective length of query: 30
Effective length of database: 5,501,190
Effective search space: 165035700
Effective search space used: 165035700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.4 bits)