RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4903
         (73 letters)



>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL)
          receptor {Human (Homo sapiens) [TaxId: 9606]}
          Length = 266

 Score = 34.9 bits (79), Expect = 2e-04
 Identities = 8/54 (14%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 18 ALMFVADSNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYI 71
          A +F  + +++ +  +D +   S++         +  ++ + R++W D     I
Sbjct: 2  AYLFFTNRHEVRKMTLDRSEYTSLIPNLRN-VVALDTEVASNRIYWSDLSQRMI 54



 Score = 28.7 bits (63), Expect = 0.037
 Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 20  MFVADS--NQILRTNMDGTMAMS----IVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
           ++ +D     I  T +D    +S    ++S       G+A+D     ++W D++L  + 
Sbjct: 44  IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVS 102



 Score = 28.7 bits (63), Expect = 0.042
 Identities = 9/53 (16%), Positives = 23/53 (43%)

Query: 20  MFVADSNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
              +  + I   +++G    +I+ +    A   +L +   ++FW D + + I 
Sbjct: 180 WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIF 232


>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 263

 Score = 32.2 bits (72), Expect = 0.003
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 6/58 (10%)

Query: 19 LMFVADSNQILRTNMDG-----TMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYI 71
          L+F A + +I R  ++      T A + +   A    G+A D   K ++W D     I
Sbjct: 4  LLF-AQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSI 60



 Score = 31.4 bits (70), Expect = 0.004
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 20  MFVADSN----QILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
           ++  D N    +I  ++MDGT    +  +     +G+  D  + +L W D      E
Sbjct: 136 LYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE 192



 Score = 30.2 bits (67), Expect = 0.014
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 20  MFVADSNQ--ILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDNLLDYIE 72
           ++  D ++  I R ++ G    +I+ +      G+ALD   + +FW D+ LD IE
Sbjct: 50  VYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIE 104



 Score = 24.1 bits (51), Expect = 2.1
 Identities = 10/46 (21%), Positives = 16/46 (34%)

Query: 20  MFVADSNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCD 65
              +  ++I    MDGT    +         G+  D     L+W D
Sbjct: 95  WTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTD 140


>d2gu2a1 c.56.5.7 (A:4-310) Aspartoacylase AspA {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 307

 Score = 26.1 bits (57), Expect = 0.33
 Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 20  MFVADSNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWC 64
           +FV+   +++    D T+    V+EAAY     A      +L   
Sbjct: 257 VFVSLDGKVIPLGGDCTVYPVFVNEAAYYEKKEAFAK-TTKLTLN 300


>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 260

 Score = 25.6 bits (54), Expect = 0.66
 Identities = 7/46 (15%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 20  MFVADSNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCD 65
           +   ++NQ+++     T +  +          VA+D + + ++  D
Sbjct: 197 VTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVD-SDRTVYVAD 241


>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus
           [TaxId: 1280]}
          Length = 319

 Score = 25.4 bits (54), Expect = 0.76
 Identities = 8/49 (16%), Positives = 16/49 (32%), Gaps = 3/49 (6%)

Query: 20  MFVAD--SNQILRTNMDGTMAMSIVSEAAYKASGVALDINAKRLFWCDN 66
           +F+ D     I + N +               + + +  +  RLF C  
Sbjct: 53  LFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKD-GRLFVCYL 100


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.130    0.364 

Gapped
Lambda     K      H
   0.267   0.0582    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 238,138
Number of extensions: 7541
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 10
Length of query: 73
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 32
Effective length of database: 1,844,666
Effective search space: 59029312
Effective search space used: 59029312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.2 bits)