Query psy4905
Match_columns 305
No_of_seqs 250 out of 633
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 20:50:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4905.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4905hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2641|consensus 100.0 1E-41 2.2E-46 327.2 12.5 189 1-302 166-354 (386)
2 PF03619 Solute_trans_a: Organ 100.0 3.5E-39 7.6E-44 300.7 11.4 140 1-144 135-274 (274)
3 PF03619 Solute_trans_a: Organ 99.9 3.8E-22 8.2E-27 186.2 13.1 144 75-249 130-274 (274)
4 KOG2641|consensus 99.3 2.9E-10 6.2E-15 110.3 19.7 124 160-302 217-344 (386)
5 COG3399 Uncharacterized protei 30.3 3.3E+02 0.0072 22.9 8.2 42 50-96 101-142 (148)
6 COG3080 FrdD Fumarate reductas 23.2 2.3E+02 0.005 23.2 5.3 82 5-86 26-111 (118)
7 PF04544 Herpes_UL20: Herpesvi 18.1 4.1E+02 0.0089 23.6 6.3 62 6-75 35-97 (179)
8 TIGR00847 ccoS cytochrome oxid 16.9 2.4E+02 0.0052 19.8 3.6 24 39-62 5-28 (51)
9 KOG2292|consensus 13.7 8.6E+02 0.019 25.7 8.0 101 50-183 279-384 (751)
10 PF03597 CcoS: Cytochrome oxid 12.9 3.4E+02 0.0074 18.5 3.5 23 40-62 5-27 (45)
No 1
>KOG2641|consensus
Probab=100.00 E-value=1e-41 Score=327.19 Aligned_cols=189 Identities=49% Similarity=0.784 Sum_probs=171.1
Q ss_pred CeeeeehhHHHHHHHHHHHHcCCccCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhhhHHHHH
Q psy4905 1 MVFVCLVKPIMAFVIIILQSMGHYHDGDWRVNGGYLYTTLLYNVSVSLALYGLFLFYFATRELLTPFDPVLKFCTIKSVI 80 (305)
Q Consensus 1 vLQy~vvkPl~~iv~iil~~~G~Y~~g~~~~~~~~lyl~ii~niS~~~Aly~L~~Fy~~~k~~L~~~~P~~KFl~IK~vV 80 (305)
|+||+++||+++++++++++.|.|++|+++. |+|+++++|+|+++|+|||.+||+++|++|.|++|+.||+|+|++|
T Consensus 166 vlQ~~ivkp~~~lv~lvl~~~g~y~~g~~~~---~~~~~~i~n~S~~lalY~L~~fy~~~~~~L~py~p~~KF~~vk~iv 242 (386)
T KOG2641|consen 166 VLQYPIVKPFLALVTLVLYAFGVYDDGDFSV---YLYLTIIYNCSVSLALYSLVLFYTVTKDELSPYQPVVKFLCVKLIV 242 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCccc---eehhHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHH
Confidence 6899999999999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccccCCCCCCCCccchHHHhhhhHHHHHHHHHHHHHHHHhcCcccccCCCccCCCCchhhHh
Q psy4905 81 FLSFWQGVLLAVLEKVMIIEPLIDATGRPTSAGTVSAGYQNLLICIEMFFASWALRAAFPWGVYASGHVTDAAGRSVTMQ 160 (305)
Q Consensus 81 flsfwQ~~ii~iL~~~g~i~~~~~~~~~~~s~~~~~~~i~~~LiCiEM~~~ai~h~~aF~~~~y~~~~~~~s~~~~v~~~ 160 (305)
|++|||++++++|++.|++++...+
T Consensus 243 f~~~wQg~vi~~l~~~g~~~~~~~~------------------------------------------------------- 267 (386)
T KOG2641|consen 243 FLSFWQGIVLAILVKLGKIGPSYFD------------------------------------------------------- 267 (386)
T ss_pred HHHHHHHHHHHHHHHhcccCcccch-------------------------------------------------------
Confidence 9999999999999999998764220
Q ss_pred hHHhhhcccCCCCcccchhhhhhhhhhhHHHHHHHHHHHHhcccccccccCCCCCCcchHHhhhhhHHHHHHHHHHHHHH
Q psy4905 161 SISSSLKLLTPFDPVLKFCTIKSVIFLSFWQGVLLAVLEKVMIIEPLIDATGRPTSAGTVSAGYQNLLICIEMFFASWAL 240 (305)
Q Consensus 161 ~~~~~~~~L~p~~P~~KFl~iK~vvF~sfwQ~i~i~il~~~g~i~~~~~~~~~~~~~~~~~~~~q~~liCiEM~~~ai~h 240 (305)
..+.++.++||++||+||+++|++|
T Consensus 268 -------------------------------------------------------~~~~~~~~iQnfiiciEM~i~ai~~ 292 (386)
T KOG2641|consen 268 -------------------------------------------------------EVGTVAYGIQNFLICIEMLIAAIAH 292 (386)
T ss_pred -------------------------------------------------------hHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 0235788999999999999999999
Q ss_pred hhcccccccccCcccCcCCCccchhchHHHHHhccChhhHHHHHHHccCcCCcceeeeccCC
Q psy4905 241 RAAFPWGVYASGHVTDAAGRSVTMQSISSSLKETMNPKDIMTDAIHNFHPQYQQYTQYSSEN 302 (305)
Q Consensus 241 ~~aF~~~~Y~~~~~~~~~~~~~~~~~~~~a~~d~~~~~D~~~d~~~~f~~~y~~y~~~~~~~ 302 (305)
.||||++||...+.....+|.+.+++..+.++|+++++|...|..|+|+|+|++|.++++.+
T Consensus 293 ~~af~~~~ya~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 354 (386)
T KOG2641|consen 293 FYAFPAAPYALFDERSCDYRSVDMFSISSSLWDSLMPNDLCSDAIRNFSPTYQDYTPQSDQD 354 (386)
T ss_pred HHhCCcchhccccccccccccccccccchHHHHhhcccCcccccccCCCcccccccccccCc
Confidence 99999999987654332356667777888999999999999999999999999999997654
No 2
>PF03619 Solute_trans_a: Organic solute transporter Ostalpha; InterPro: IPR005178 This is a family of mainly hypothetical proteins of no known function.
Probab=100.00 E-value=3.5e-39 Score=300.69 Aligned_cols=140 Identities=41% Similarity=0.806 Sum_probs=134.8
Q ss_pred CeeeeehhHHHHHHHHHHHHcCCccCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhhhHHHHH
Q psy4905 1 MVFVCLVKPIMAFVIIILQSMGHYHDGDWRVNGGYLYTTLLYNVSVSLALYGLFLFYFATRELLTPFDPVLKFCTIKSVI 80 (305)
Q Consensus 1 vLQy~vvkPl~~iv~iil~~~G~Y~~g~~~~~~~~lyl~ii~niS~~~Aly~L~~Fy~~~k~~L~~~~P~~KFl~IK~vV 80 (305)
|+||+++||+++++++++++.|.|+||+++++++|+|+++++|+|+++|||+|++||+++|++|+|+||.+||+|+|+||
T Consensus 135 VlQ~~vvrpl~~~i~iil~~~g~y~~~~~~~~~~~~~l~ii~~iS~~~Aly~L~~fy~~~~~~L~~~~p~~KF~~iK~vv 214 (274)
T PF03619_consen 135 VLQYVVVRPLLSIISIILEAFGVYCEGSFSPHSAYLYLTIINNISVTLALYGLVIFYRATKEELKPYRPLLKFLCIKLVV 214 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccccCCCCCCCCccchHHHhhhhHHHHHHHHHHHHHHHHhcCcccc
Q psy4905 81 FLSFWQGVLLAVLEKVMIIEPLIDATGRPTSAGTVSAGYQNLLICIEMFFASWALRAAFPWGVY 144 (305)
Q Consensus 81 flsfwQ~~ii~iL~~~g~i~~~~~~~~~~~s~~~~~~~i~~~LiCiEM~~~ai~h~~aF~~~~y 144 (305)
|++|||++++++|.+.|++++.++++. .++++.++||+|+|+||+++|++|++||||+||
T Consensus 215 fl~f~Q~~ii~iL~~~g~i~~~~~~~~----~~~~~~~i~~~LicvEM~i~ai~~~~af~~~~y 274 (274)
T PF03619_consen 215 FLSFWQGFIISILASFGVIPCTPPWSS----PEDIASGIQNFLICVEMFIFAILHRYAFPYSPY 274 (274)
T ss_pred HHHHHHHHHHHHHHHCCCcCCCccccc----HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 999999999999999999999776432 359999999999999999999999999999998
No 3
>PF03619 Solute_trans_a: Organic solute transporter Ostalpha; InterPro: IPR005178 This is a family of mainly hypothetical proteins of no known function.
Probab=99.88 E-value=3.8e-22 Score=186.18 Aligned_cols=144 Identities=28% Similarity=0.424 Sum_probs=103.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccccccCCCCCC-CCccchHHHhhhhHHHHHHHHHHHHHHHHhcCcccccCCCccCCC
Q psy4905 75 TIKSVIFLSFWQGVLLAVLEKVMIIEPLIDATGR-PTSAGTVSAGYQNLLICIEMFFASWALRAAFPWGVYASGHVTDAA 153 (305)
Q Consensus 75 ~IK~vVflsfwQ~~ii~iL~~~g~i~~~~~~~~~-~~s~~~~~~~i~~~LiCiEM~~~ai~h~~aF~~~~y~~~~~~~s~ 153 (305)
..|..|+...+-..+++++.-.-...+.+..+.. .....-....+++..+++-|...
T Consensus 130 ~~k~~VlQ~~vvrpl~~~i~iil~~~g~y~~~~~~~~~~~~~l~ii~~iS~~~Aly~L---------------------- 187 (274)
T PF03619_consen 130 RCKWGVLQYVVVRPLLSIISIILEAFGVYCEGSFSPHSAYLYLTIINNISVTLALYGL---------------------- 187 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 3466676666666555554433222222211110 01123334555566666655555
Q ss_pred CchhhHhhHHhhhcccCCCCcccchhhhhhhhhhhHHHHHHHHHHHHhcccccccccCCCCCCcchHHhhhhhHHHHHHH
Q psy4905 154 GRSVTMQSISSSLKLLTPFDPVLKFCTIKSVIFLSFWQGVLLAVLEKVMIIEPLIDATGRPTSAGTVSAGYQNLLICIEM 233 (305)
Q Consensus 154 ~~~v~~~~~~~~~~~L~p~~P~~KFl~iK~vvF~sfwQ~i~i~il~~~g~i~~~~~~~~~~~~~~~~~~~~q~~liCiEM 233 (305)
..+|..++++|+|+||++||+|||+|+|++|||++++++|.+.|+++... ...+.++.+.++||+++|+||
T Consensus 188 -----~~fy~~~~~~L~~~~p~~KF~~iK~vvfl~f~Q~~ii~iL~~~g~i~~~~----~~~~~~~~~~~i~~~LicvEM 258 (274)
T PF03619_consen 188 -----VIFYRATKEELKPYRPLLKFLCIKLVVFLSFWQGFIISILASFGVIPCTP----PWSSPEDIASGIQNFLICVEM 258 (274)
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCCCc----ccccHHHHHHHHHHHHHHHHH
Confidence 35567789999999999999999999999999999999999999998642 222234899999999999999
Q ss_pred HHHHHHHhhccccccc
Q psy4905 234 FFASWALRAAFPWGVY 249 (305)
Q Consensus 234 ~~~ai~h~~aF~~~~Y 249 (305)
+++|++|+|||||+||
T Consensus 259 ~i~ai~~~~af~~~~y 274 (274)
T PF03619_consen 259 FIFAILHRYAFPYSPY 274 (274)
T ss_pred HHHHHHHHHhccCCCC
Confidence 9999999999999998
No 4
>KOG2641|consensus
Probab=99.29 E-value=2.9e-10 Score=110.29 Aligned_cols=124 Identities=23% Similarity=0.297 Sum_probs=94.6
Q ss_pred hhHHhhhcccCCCCcccchhhhhhhhhhhHHHHHHHHHHHHhcccccccccCCCCCCcchHHhhhhhHHHHHHHHHHHHH
Q psy4905 160 QSISSSLKLLTPFDPVLKFCTIKSVIFLSFWQGVLLAVLEKVMIIEPLIDATGRPTSAGTVSAGYQNLLICIEMFFASWA 239 (305)
Q Consensus 160 ~~~~~~~~~L~p~~P~~KFl~iK~vvF~sfwQ~i~i~il~~~g~i~~~~~~~~~~~~~~~~~~~~q~~liCiEM~~~ai~ 239 (305)
.+|..++++|.||+|++||+|+|+|||++||||+++.+|.+.|.+++. .. .+.+...--+|-++..+.
T Consensus 217 ~fy~~~~~~L~py~p~~KF~~vk~ivf~~~wQg~vi~~l~~~g~~~~~---------~~---~~~~~~~~~iQnfiiciE 284 (386)
T KOG2641|consen 217 LFYTVTKDELSPYQPVVKFLCVKLIVFLSFWQGIVLAILVKLGKIGPS---------YF---DEVGTVAYGIQNFLICIE 284 (386)
T ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcc---------cc---hhHHHHHHHhhhhHHHHH
Confidence 678889999999999999999999999999999999999999998641 21 224556667899999999
Q ss_pred Hhhccccccc----ccCcccCcCCCccchhchHHHHHhccChhhHHHHHHHccCcCCcceeeeccCC
Q psy4905 240 LRAAFPWGVY----ASGHVTDAAGRSVTMQSISSSLKETMNPKDIMTDAIHNFHPQYQQYTQYSSEN 302 (305)
Q Consensus 240 h~~aF~~~~Y----~~~~~~~~~~~~~~~~~~~~a~~d~~~~~D~~~d~~~~f~~~y~~y~~~~~~~ 302 (305)
+..|==-..| ..... ...+. -.++..|.....|.+||+.+.=+.-++.++|++-..
T Consensus 285 M~i~ai~~~~af~~~~ya~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 344 (386)
T KOG2641|consen 285 MLIAAIAHFYAFPAAPYAL--FDERS-----CDYRSVDMFSISSSLWDSLMPNDLCSDAIRNFSPTY 344 (386)
T ss_pred HHHHHHHHHHhCCcchhcc--ccccc-----cccccccccccchHHHHhhcccCcccccccCCCccc
Confidence 9777433333 33221 11121 135788999999999999996666777788887553
No 5
>COG3399 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.31 E-value=3.3e+02 Score=22.91 Aligned_cols=42 Identities=24% Similarity=0.334 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhhhcCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHh
Q psy4905 50 LYGLFLFYFATRELLTPFDPVLKFCTIKSVIFLSFWQGVLLAVLEKV 96 (305)
Q Consensus 50 ly~L~~Fy~~~k~~L~~~~P~~KFl~IK~vVflsfwQ~~ii~iL~~~ 96 (305)
.+.|+.|-.+.+-..+.-+|++|++-- ..|--+++|.+|++.
T Consensus 101 if~Lv~Fsl~c~f~~kk~npvGkyIHp-----vvft~~~lIviLAK~ 142 (148)
T COG3399 101 IFLLVHFSLACVFMAKKTNPVGKYIHP-----VVFTHMLLIVILAKA 142 (148)
T ss_pred HHHHHHHHHHHHHHHhccCCccceehH-----HHHHHHHHHHHHHHH
Confidence 345667777777777777888877643 223345666666654
No 6
>COG3080 FrdD Fumarate reductase subunit D [Energy production and conversion]
Probab=23.25 E-value=2.3e+02 Score=23.19 Aligned_cols=82 Identities=15% Similarity=0.171 Sum_probs=51.2
Q ss_pred eehhHHHHHHHHHHHHcCCccCCccc---cccchhhHH-HHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhhhHHHHH
Q psy4905 5 CLVKPIMAFVIIILQSMGHYHDGDWR---VNGGYLYTT-LLYNVSVSLALYGLFLFYFATRELLTPFDPVLKFCTIKSVI 80 (305)
Q Consensus 5 ~vvkPl~~iv~iil~~~G~Y~~g~~~---~~~~~lyl~-ii~niS~~~Aly~L~~Fy~~~k~~L~~~~P~~KFl~IK~vV 80 (305)
+++-|++.++-=++-..|..+..+.+ ..+++-++. ++..+-+.++|+|-.=--+.--.+++=+.|.+|+.|.-+.+
T Consensus 26 AiiaPV~iLl~GillPlG~~d~~~lse~llaf~~s~Igkl~llvl~vlplw~a~HRihHgmhdlk~h~pag~~~fYGlA~ 105 (118)
T COG3080 26 AIIAPVLILLVGILLPLGLFDADALSERLLAFAQSPIGKLFLLVLIVLPLWCALHRIHHGMHDLKIHVPAGKWVFYGLAV 105 (118)
T ss_pred HHHHHHHHHHHHHHhhccccChhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhheeeeeeeeeeeeeHHHH
Confidence 46778888888888889999877765 123333332 22233344566654433222234688889999999987766
Q ss_pred HHHHHH
Q psy4905 81 FLSFWQ 86 (305)
Q Consensus 81 flsfwQ 86 (305)
..|-+-
T Consensus 106 i~sv~~ 111 (118)
T COG3080 106 ILTVVA 111 (118)
T ss_pred HHHHHH
Confidence 555443
No 7
>PF04544 Herpes_UL20: Herpesvirus egress protein UL20; InterPro: IPR007629 UL20 is predicted to be a transmembrane protein with multiple membrane spans. It is involved in the trans-cellular transport of enveloped virions, and is therefore important for viral egress. However, UL20 operates in different cellular compartments and different stages of egress in Suid herpesvirus 1 (Pseudorabies virus) and herpes simplex virus. This is thought to be due to differences in egress pathways between these two viruses [].; GO: 0019067 viral assembly, maturation, egress, and release
Probab=18.12 E-value=4.1e+02 Score=23.57 Aligned_cols=62 Identities=10% Similarity=0.207 Sum_probs=33.4
Q ss_pred ehhHHHHHHHHHHH-HcCCccCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchhhh
Q psy4905 6 LVKPIMAFVIIILQ-SMGHYHDGDWRVNGGYLYTTLLYNVSVSLALYGLFLFYFATRELLTPFDPVLKFCT 75 (305)
Q Consensus 6 vvkPl~~iv~iil~-~~G~Y~~g~~~~~~~~lyl~ii~niS~~~Aly~L~~Fy~~~k~~L~~~~P~~KFl~ 75 (305)
++||++.++-..-. .+|.+. . ..-..++..+...-.+......|+-.|.|+-|.++..+++.
T Consensus 35 ~lKPlCCl~f~~Yy~~tg~~~-----~---~~~~~~~T~~yY~~l~l~~~~~Y~NIk~DrLPL~~~qq~~~ 97 (179)
T PF04544_consen 35 VLKPLCCLIFLWYYRCTGDSR-----F---FICGLAITAAYYMRLALMAFFLYRNIKRDRLPLSTPQQWIL 97 (179)
T ss_pred HHHHHHHHHHHHHHHhcCchH-----H---HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcHHHHHHH
Confidence 67898887665532 233321 1 11112222222222334466678889999988877665543
No 8
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=16.89 E-value=2.4e+02 Score=19.83 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q psy4905 39 TLLYNVSVSLALYGLFLFYFATRE 62 (305)
Q Consensus 39 ~ii~niS~~~Aly~L~~Fy~~~k~ 62 (305)
.+..-+|..+++-+|+.|..+.|+
T Consensus 5 ~~LIpiSl~l~~~~l~~f~Wavk~ 28 (51)
T TIGR00847 5 TILIPISLLLGGVGLVAFLWSLKS 28 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 356678888999999999999876
No 9
>KOG2292|consensus
Probab=13.66 E-value=8.6e+02 Score=25.69 Aligned_cols=101 Identities=26% Similarity=0.221 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhhhhcCCCC-CcchhhhHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCccchHHHhhhhHHHHHHH
Q psy4905 50 LYGLFLFYFATRELLTPFD-PVLKFCTIKSVIFLSFWQGVLLAVLEKVMIIEPLIDATGRPTSAGTVSAGYQNLLICIEM 128 (305)
Q Consensus 50 ly~L~~Fy~~~k~~L~~~~-P~~KFl~IK~vVflsfwQ~~ii~iL~~~g~i~~~~~~~~~~~s~~~~~~~i~~~LiCiEM 128 (305)
|--++-|..-+|..|.+.+ -.+-.+.+-++..+.+ +....|+..|.+.| |+++..|-=|
T Consensus 279 L~qi~Af~~y~k~~ls~~~F~~l~~~~v~~~~~~~~---vv~~~Lt~~g~iaP---WtGRfySL~D-------------- 338 (751)
T KOG2292|consen 279 LLQIVAFVDYLKGRLSPKQFQVLFRLVVSLVGVVVF---VVVAALTATGYIAP---WTGRFYSLWD-------------- 338 (751)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcceecc---cccceeeccC--------------
Confidence 3344455666666665422 0111111222223333 56677888898875 6665321111
Q ss_pred HHHHHHHHHhcCcccccCCCcc----CCCCchhhHhhHHhhhcccCCCCcccchhhhhh
Q psy4905 129 FFASWALRAAFPWGVYASGHVT----DAAGRSVTMQSISSSLKLLTPFDPVLKFCTIKS 183 (305)
Q Consensus 129 ~~~ai~h~~aF~~~~y~~~~~~----~s~~~~v~~~~~~~~~~~L~p~~P~~KFl~iK~ 183 (305)
.-|...|+| -|.+-+.+|.++--..+-|.--=|.+-+.|+|-
T Consensus 339 -------------~~YAK~hIPIIASVSEHQPttW~SfffDlhiLv~lfPaGl~~Cfk~ 384 (751)
T KOG2292|consen 339 -------------TGYAKIHIPIIASVSEHQPTTWSSFFFDLHILVFLFPAGLYYCFKN 384 (751)
T ss_pred -------------CcchhcccceEEeccccCCCchHHHHHHHHHHHHhhhhhHHHhhhh
Confidence 224445555 456667788777777777777778888888874
No 10
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=12.87 E-value=3.4e+02 Score=18.45 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q psy4905 40 LLYNVSVSLALYGLFLFYFATRE 62 (305)
Q Consensus 40 ii~niS~~~Aly~L~~Fy~~~k~ 62 (305)
+..-+|..++.-++..|..+.|+
T Consensus 5 ~lip~sl~l~~~~l~~f~Wavk~ 27 (45)
T PF03597_consen 5 ILIPVSLILGLIALAAFLWAVKS 27 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc
Confidence 45567888889999999999876
Done!