Query psy4905
Match_columns 305
No_of_seqs 250 out of 633
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 20:51:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4905.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4905hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kf6_D Fumarate reductase 13 k 22.4 2.4E+02 0.0083 22.2 6.5 71 6-77 27-103 (119)
2 2rlw_A PLNF; toxin; NMR {Lacto 17.9 48 0.0016 19.8 1.1 23 266-288 9-31 (34)
3 1nkz_B Light-harvesting protei 16.6 41 0.0014 21.7 0.7 18 233-250 23-40 (41)
4 1lgh_B LH II, B800/850, light 15.5 45 0.0015 22.0 0.7 17 233-249 28-44 (45)
5 1dx7_A Light-harvesting protei 14.4 54 0.0018 21.9 0.9 17 233-249 31-47 (48)
6 1wrg_A LH-1, light-harvesting 14.0 95 0.0033 21.2 2.0 20 233-252 31-50 (55)
7 3hj4_A Minor editosome-associa 5.2 1.2E+03 0.039 21.8 6.4 46 7-68 155-202 (384)
8 3f1j_A Matrix protein, GP18, P 2.7 3.3E+02 0.011 21.2 0.0 24 160-183 81-105 (142)
9 2j6y_A Phosphoserine phosphata 2.7 2.7E+02 0.0092 21.7 -0.5 22 278-299 70-91 (111)
10 3to7_A Histone acetyltransfera 2.6 5.8E+02 0.02 22.9 1.6 40 160-202 164-206 (276)
No 1
>1kf6_D Fumarate reductase 13 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_D* 1l0v_D* 2b76_D* 3cir_D* 3p4p_D* 3p4q_D* 3p4r_D* 3p4s_D*
Probab=22.37 E-value=2.4e+02 Score=22.19 Aligned_cols=71 Identities=15% Similarity=0.250 Sum_probs=49.6
Q ss_pred ehhHHHHHHHHHHHHcCCccCCccccc----cchhhH-HHHHHHHHHHHHHHHH-HHHHHhhhhcCCCCCcchhhhHH
Q psy4905 6 LVKPIMAFVIIILQSMGHYHDGDWRVN----GGYLYT-TLLYNVSVSLALYGLF-LFYFATRELLTPFDPVLKFCTIK 77 (305)
Q Consensus 6 vvkPl~~iv~iil~~~G~Y~~g~~~~~----~~~lyl-~ii~niS~~~Aly~L~-~Fy~~~k~~L~~~~P~~KFl~IK 77 (305)
++-|++-++.=++-..|....+..+.. ++.-|+ .++....+.+-+||=. .+|+.++| |+=+.|..|..|--
T Consensus 27 l~~PvliLl~GillPlG~~~~~~lsY~~~~aFa~s~ig~l~ll~~i~lplWh~~HRihh~lHD-lkih~~~~~~~~Yg 103 (119)
T 1kf6_D 27 IIAPVMILLVGILLPLGLFPGDALSYERVLAFAQSFIGRVFLFLMIVLPLWCGLHRMHHAMHD-LKIHVPAGKWVFYG 103 (119)
T ss_dssp HTHHHHHHHHHTTGGGTCSSTTTTSHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCCcccccHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHhhhh-heeecCcchhhHHH
Confidence 456777777777888999876665433 222333 3444455667778877 88999977 99999999888864
No 2
>2rlw_A PLNF; toxin; NMR {Lactobacillus plantarum}
Probab=17.88 E-value=48 Score=19.84 Aligned_cols=23 Identities=22% Similarity=0.525 Sum_probs=19.6
Q ss_pred chHHHHHhccChhhHHHHHHHcc
Q psy4905 266 SISSSLKETMNPKDIMTDAIHNF 288 (305)
Q Consensus 266 ~~~~a~~d~~~~~D~~~d~~~~f 288 (305)
.+..+.+.+.+|.|-+-.++++|
T Consensus 9 gvrnnyksavgpadwvisavrgf 31 (34)
T 2rlw_A 9 GVRNNYKSAVGPADWVISAVRGF 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhccccccChHHHHHHHHHhh
Confidence 34568899999999999999988
No 3
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=16.58 E-value=41 Score=21.71 Aligned_cols=18 Identities=22% Similarity=-0.005 Sum_probs=15.0
Q ss_pred HHHHHHHHhhcccccccc
Q psy4905 233 MFFASWALRAAFPWGVYA 250 (305)
Q Consensus 233 M~~~ai~h~~aF~~~~Y~ 250 (305)
..++.++|..++-|+|+-
T Consensus 23 ~~iA~vAH~l~w~wrPWl 40 (41)
T 1nkz_B 23 LGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 457789999999999974
No 4
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=15.53 E-value=45 Score=21.95 Aligned_cols=17 Identities=18% Similarity=0.413 Sum_probs=14.5
Q ss_pred HHHHHHHHhhccccccc
Q psy4905 233 MFFASWALRAAFPWGVY 249 (305)
Q Consensus 233 M~~~ai~h~~aF~~~~Y 249 (305)
..++.++|..++-|+|+
T Consensus 28 ~~iA~vAH~L~~~wrPW 44 (45)
T 1lgh_B 28 IILAAVAHVLVWVWKPW 44 (45)
T ss_dssp HHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 46778999999999986
No 5
>1dx7_A Light-harvesting protein B-875-beta chain; bacteriochlorophyll binding, membrane protein, photosynthesis; NMR {Rhodobacter sphaeroides} SCOP: f.3.1.1 PDB: 1jo5_A
Probab=14.43 E-value=54 Score=21.87 Aligned_cols=17 Identities=24% Similarity=0.261 Sum_probs=14.2
Q ss_pred HHHHHHHHhhccccccc
Q psy4905 233 MFFASWALRAAFPWGVY 249 (305)
Q Consensus 233 M~~~ai~h~~aF~~~~Y 249 (305)
..++.++|..++-|+|+
T Consensus 31 ~~iA~vAH~l~w~wrPW 47 (48)
T 1dx7_A 31 SAVAIVAHLAVYIWRPW 47 (48)
T ss_dssp TTHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 35678999999999986
No 6
>1wrg_A LH-1, light-harvesting protein B-880, beta chain; membrane protein, pigment binding, photosynthesis; NMR {Rhodospirillum rubrum}
Probab=13.98 E-value=95 Score=21.24 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=16.9
Q ss_pred HHHHHHHHhhcccccccccC
Q psy4905 233 MFFASWALRAAFPWGVYASG 252 (305)
Q Consensus 233 M~~~ai~h~~aF~~~~Y~~~ 252 (305)
..++.++|..++-|+|+-++
T Consensus 31 ~~iAvvAH~L~~~wrPWl~g 50 (55)
T 1wrg_A 31 FGVAAFAHLLVWIWRPWVPG 50 (55)
T ss_dssp HHHHHHHHHHHSSCSSSSCC
T ss_pred HHHHHHHHHHHHHhcccCCC
Confidence 45678999999999999765
No 7
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=5.20 E-value=1.2e+03 Score=21.82 Aligned_cols=46 Identities=13% Similarity=0.123 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHHcCCccC--CccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy4905 7 VKPIMAFVIIILQSMGHYHD--GDWRVNGGYLYTTLLYNVSVSLALYGLFLFYFATRELLTPFD 68 (305)
Q Consensus 7 vkPl~~iv~iil~~~G~Y~~--g~~~~~~~~lyl~ii~niS~~~Aly~L~~Fy~~~k~~L~~~~ 68 (305)
+||++.++=..+...|..+. |.++ +.|+.+|+++|.+.+..|+..+
T Consensus 155 lr~LvllvK~Wak~rgLn~~~~GgLs----------------SYaL~lMVI~fLQ~~~vLP~Lq 202 (384)
T 3hj4_A 155 YGAYIHLVKAWGKAREVIAPERSTFN----------------SFTVTTMALMVLQELGLLPVFS 202 (384)
T ss_dssp HHHHHHHHHHHHHHTTSBCGGGTSBC----------------HHHHHHHHHHHHHHHTSSCCCC
T ss_pred HHHHHHHHHHHHHHcCCCCccCCCcc----------------HHHHHHHHHHHHhcCCCCCccc
Confidence 68888888888888777653 3332 4677788999999887777655
No 8
>3f1j_A Matrix protein, GP18, P16; viral matrix protein, RNA binding, membrane binding, viruses, ssRNA negative-strand viruses, mononegavirales; HET: C5P; 2.65A {Borna disease virus}
Probab=2.67 E-value=3.3e+02 Score=21.17 Aligned_cols=24 Identities=17% Similarity=0.380 Sum_probs=20.1
Q ss_pred hhHHhhhcccCCCC-cccchhhhhh
Q psy4905 160 QSISSSLKLLTPFD-PVLKFCTIKS 183 (305)
Q Consensus 160 ~~~~~~~~~L~p~~-P~~KFl~iK~ 183 (305)
.|+..++..++-|+ |.-||+-+|+
T Consensus 81 dfl~ltlns~~vykdpi~~~mf~~l 105 (142)
T 3f1j_A 81 DFLLLTLNSLSVYKDPIRKYMFLRL 105 (142)
T ss_dssp HHHHHHHHHHBSSSSCCCSEEEEEC
T ss_pred ceeeeeecceeeecccccceeEEEe
Confidence 78888888888887 9999988764
No 9
>2j6y_A Phosphoserine phosphatase RSBU; hydrolase, partner switching, protein phosphatase, RSBT, stress; 1.85A {Bacillus subtilis} PDB: 2j70_A 2j6z_A
Probab=2.67 E-value=2.7e+02 Score=21.66 Aligned_cols=22 Identities=14% Similarity=0.307 Sum_probs=14.1
Q ss_pred hhHHHHHHHccCcCCcceeeec
Q psy4905 278 KDIMTDAIHNFHPQYQQYTQYS 299 (305)
Q Consensus 278 ~D~~~d~~~~f~~~y~~y~~~~ 299 (305)
-|+...+.-+||=+||+|..-.
T Consensus 70 ~d~L~Evm~gyGlayre~qsL~ 91 (111)
T 2j6y_A 70 LDFLIEVMIGYGMAYQEHQTLR 91 (111)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHhHhHHHHHHHH
Confidence 3888899999999999987643
No 10
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=2.58 E-value=5.8e+02 Score=22.92 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=27.6
Q ss_pred hhHHhhhccc---CCCCcccchhhhhhhhhhhHHHHHHHHHHHHhc
Q psy4905 160 QSISSSLKLL---TPFDPVLKFCTIKSVIFLSFWQGVLLAVLEKVM 202 (305)
Q Consensus 160 ~~~~~~~~~L---~p~~P~~KFl~iK~vvF~sfwQ~i~i~il~~~g 202 (305)
-+|..++.|= .|=+|+...= .+.+.+||...++..|...+
T Consensus 164 fSYeLSr~Eg~~G~PEkPLSdLG---~~sY~~YW~~~i~~~L~~~~ 206 (276)
T 3to7_A 164 FSYELSKKENKVGSPEKPLSDLG---LLSYRAYWSDTLITLLVEHQ 206 (276)
T ss_dssp HHHHHHHHTTCCBEECSSCCHHH---HHHHHHHHHHHHHHHHHHTC
T ss_pred heeeeeeccCCCCCCCCCCCHHH---HHHHHHHHHHHHHHHHHhcC
Confidence 4565555432 3666766653 35899999999999987653
Done!