Query psy4905
Match_columns 305
No_of_seqs 250 out of 633
Neff 6.5
Searched_HMMs 13730
Date Fri Aug 16 20:51:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4905.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4905hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ijdb_ f.3.1.1 (B:) Light-har 22.1 15 0.0011 22.0 1.0 17 233-249 24-40 (40)
2 d1nkzb_ f.3.1.1 (B:) Light-har 18.1 17 0.0012 21.8 0.7 18 233-250 23-40 (41)
3 d1rzhh2 f.23.10.1 (H:11-35) Ph 15.0 88 0.0064 16.5 3.2 17 46-62 9-25 (26)
4 d1lghb_ f.3.1.1 (B:) Light-har 11.3 37 0.0027 20.6 0.9 17 233-249 26-42 (43)
5 d1jo5a_ f.3.1.1 (A:) Light-har 10.3 38 0.0027 21.0 0.7 17 233-249 31-47 (48)
6 d2b4va1 a.160.1.4 (A:289-471) 6.9 2.5E+02 0.018 20.3 4.6 42 6-63 3-46 (183)
7 d1kf6d_ f.21.2.2 (D:) Fumarate 5.7 4.8E+02 0.035 18.6 7.7 72 5-77 26-103 (119)
8 d1bvp11 a.115.1.1 (1:1-120,1:2 4.1 1.9E+02 0.014 23.0 2.0 33 220-252 55-87 (215)
9 d1ppjj_ f.23.14.1 (J:) Subunit 3.5 1.9E+02 0.014 16.2 1.1 22 268-289 10-31 (33)
10 d1eema1 a.45.1.1 (A:103-241) C 3.5 2.2E+02 0.016 19.5 1.8 28 269-296 108-138 (139)
No 1
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=22.11 E-value=15 Score=21.98 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=14.3
Q ss_pred HHHHHHHHhhccccccc
Q psy4905 233 MFFASWALRAAFPWGVY 249 (305)
Q Consensus 233 M~~~ai~h~~aF~~~~Y 249 (305)
..++.++|..||.++|+
T Consensus 24 ~~iA~~AH~La~~~tPW 40 (40)
T d1ijdb_ 24 LVIAAIAHFLAFTLTPW 40 (40)
T ss_dssp HHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 46778899999999885
No 2
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=18.15 E-value=17 Score=21.79 Aligned_cols=18 Identities=22% Similarity=-0.005 Sum_probs=15.0
Q ss_pred HHHHHHHHhhcccccccc
Q psy4905 233 MFFASWALRAAFPWGVYA 250 (305)
Q Consensus 233 M~~~ai~h~~aF~~~~Y~ 250 (305)
..++.++|..||.++|+-
T Consensus 23 ~~iA~~AH~La~~~tPWL 40 (41)
T d1nkzb_ 23 LGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHHHHHHhCccc
Confidence 467789999999999974
No 3
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=14.97 E-value=88 Score=16.49 Aligned_cols=17 Identities=12% Similarity=0.317 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy4905 46 VSLALYGLFLFYFATRE 62 (305)
Q Consensus 46 ~~~Aly~L~~Fy~~~k~ 62 (305)
..+++++|+++|.++.+
T Consensus 9 ~fw~ffalli~ylqten 25 (26)
T d1rzhh2 9 SFWIFLAGLIYYLQTEN 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccc
Confidence 35788899999987753
No 4
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=11.31 E-value=37 Score=20.61 Aligned_cols=17 Identities=18% Similarity=0.413 Sum_probs=14.3
Q ss_pred HHHHHHHHhhccccccc
Q psy4905 233 MFFASWALRAAFPWGVY 249 (305)
Q Consensus 233 M~~~ai~h~~aF~~~~Y 249 (305)
..++.++|..++-|+|+
T Consensus 26 ~~iAvvAHiLvw~wrPW 42 (43)
T d1lghb_ 26 IILAAVAHVLVWVWKPW 42 (43)
T ss_dssp HHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 46678899999999986
No 5
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=10.29 E-value=38 Score=21.03 Aligned_cols=17 Identities=24% Similarity=0.261 Sum_probs=14.0
Q ss_pred HHHHHHHHhhccccccc
Q psy4905 233 MFFASWALRAAFPWGVY 249 (305)
Q Consensus 233 M~~~ai~h~~aF~~~~Y 249 (305)
-.++.++|.-++-|+|+
T Consensus 31 ~~iAvvAH~L~w~wrPW 47 (48)
T d1jo5a_ 31 SAVAIVAHLAVYIWRPW 47 (48)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 35677899999999985
No 6
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]}
Probab=6.86 E-value=2.5e+02 Score=20.35 Aligned_cols=42 Identities=12% Similarity=0.073 Sum_probs=27.9
Q ss_pred ehhHHHHHHHHHHHHcCCcc--CCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy4905 6 LVKPIMAFVIIILQSMGHYH--DGDWRVNGGYLYTTLLYNVSVSLALYGLFLFYFATREL 63 (305)
Q Consensus 6 vvkPl~~iv~iil~~~G~Y~--~g~~~~~~~~lyl~ii~niS~~~Aly~L~~Fy~~~k~~ 63 (305)
.+||+..++=.-+...|..+ .|.++ +.||..++++|.+++..
T Consensus 3 ~~R~l~~~vK~Wak~~~i~~~~~G~ls----------------SYal~lmvi~fLQ~~~~ 46 (183)
T d2b4va1 3 AARHTAMAVKAWGKATNVGAGSGAMLT----------------SYAVTVMFIYYLLVTRQ 46 (183)
T ss_dssp THHHHHHHHHHHHHTCC-----CCSSC----------------HHHHHHHHHHHHHHTTS
T ss_pred ceeeHHHHHHHHHHHcCCCCccCCCch----------------HHHHHHHHHHHHHhcCC
Confidence 47888887777777777775 34443 46777888899888664
No 7
>d1kf6d_ f.21.2.2 (D:) Fumarate reductase subunit FrdD {Escherichia coli [TaxId: 562]}
Probab=5.75 E-value=4.8e+02 Score=18.56 Aligned_cols=72 Identities=15% Similarity=0.211 Sum_probs=48.3
Q ss_pred eehhHHHHHHHHHHHHcCCccCCccccccc----hhhH-HHHHHHHHHHHHHHH-HHHHHHhhhhcCCCCCcchhhhHH
Q psy4905 5 CLVKPIMAFVIIILQSMGHYHDGDWRVNGG----YLYT-TLLYNVSVSLALYGL-FLFYFATRELLTPFDPVLKFCTIK 77 (305)
Q Consensus 5 ~vvkPl~~iv~iil~~~G~Y~~g~~~~~~~----~lyl-~ii~niS~~~Aly~L-~~Fy~~~k~~L~~~~P~~KFl~IK 77 (305)
+++-|++.++.=++-..|....+..+.+.. +-|+ ..+....+.+-|||= =.+++.++ ||+=+.|.+|.+|--
T Consensus 26 A~~~Pvlill~giLlPlG~~~~~a~~y~~i~aFa~s~iG~l~ll~~i~lplWh~~HRihHglH-Dlkih~p~g~~~fYg 103 (119)
T d1kf6d_ 26 AIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQSFIGRVFLFLMIVLPLWCGLHRMHHAMH-DLKIHVPAGKWVFYG 103 (119)
T ss_dssp HHTHHHHHHHHHTTGGGTCSSTTTTSHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCccccCHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhcccccchhHHHHH
Confidence 356788888888888999988777665533 3344 344445556666654 35566664 588889999988753
No 8
>d1bvp11 a.115.1.1 (1:1-120,1:255-349) BTV vp7 {Bluetongue virus [TaxId: 40051]}
Probab=4.05 E-value=1.9e+02 Score=22.97 Aligned_cols=33 Identities=9% Similarity=0.274 Sum_probs=27.7
Q ss_pred HHhhhhhHHHHHHHHHHHHHHhhcccccccccC
Q psy4905 220 VSAGYQNLLICIEMFFASWALRAAFPWGVYASG 252 (305)
Q Consensus 220 ~~~~~q~~liCiEM~~~ai~h~~aF~~~~Y~~~ 252 (305)
....=.-+..|+.|.+.|+-|.+.+---+|.+.
T Consensus 55 ~~ern~mffmc~dm~l~al~i~~g~isP~Y~q~ 87 (215)
T d1bvp11 55 LAQRNEMFFMCLDMMLSAAGINVGPISPDYTQH 87 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCSCCSSCCCC
T ss_pred hhhhhhHHHHHHHHHHHHhccccccCCCccccc
Confidence 444555688999999999999999988889875
No 9
>d1ppjj_ f.23.14.1 (J:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.55 E-value=1.9e+02 Score=16.24 Aligned_cols=22 Identities=14% Similarity=0.359 Sum_probs=18.7
Q ss_pred HHHHHhccChhhHHHHHHHccC
Q psy4905 268 SSSLKETMNPKDIMTDAIHNFH 289 (305)
Q Consensus 268 ~~a~~d~~~~~D~~~d~~~~f~ 289 (305)
..++.|.+|-.-+++|+.|.+-
T Consensus 10 ~d~i~d~~NkGklWKdIkhkYe 31 (33)
T d1ppjj_ 10 ADAIYEHINEGKLWKHIKHKYE 31 (33)
T ss_dssp HHHHHHHHTTTTSHHHHGGGTC
T ss_pred HHHHHHHhcccchHHHHHHHhc
Confidence 4589999999999999998763
No 10
>d1eema1 a.45.1.1 (A:103-241) Class omega GST {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.53 E-value=2.2e+02 Score=19.53 Aligned_cols=28 Identities=7% Similarity=0.220 Sum_probs=22.3
Q ss_pred HHHHhccChhhHHHHHHHcc---CcCCccee
Q psy4905 269 SSLKETMNPKDIMTDAIHNF---HPQYQQYT 296 (305)
Q Consensus 269 ~a~~d~~~~~D~~~d~~~~f---~~~y~~y~ 296 (305)
-+++.++.+.+-..++...+ .|+|.||-
T Consensus 108 P~vk~~~~~~e~~~~~~~~~~~~~p~~~d~~ 138 (139)
T d1eema1 108 PTVSALLTSEKDWQGFLELYLQNSPEACDYG 138 (139)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHTCTTGGGTT
T ss_pred cHHHHHCCCHHHHHHHHHHHHcCCCCcccCC
Confidence 37888888888888888777 67888773
Done!