RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4905
(305 letters)
>gnl|CDD|217643 pfam03619, Solute_trans_a, Organic solute transporter Ostalpha.
This family is a transmembrane organic solute transport
protein. In vertebrates these proteins form a complex
with Ostbeta, and function as bile transporters. In
plants they may transport brassinosteroid-like compounds
and act as regulators of cell death.
Length = 272
Score = 180 bits (458), Expect = 3e-55
Identities = 68/140 (48%), Positives = 91/140 (65%), Gaps = 5/140 (3%)
Query: 5 CLVKPIMAFVIIILQSMGHYHDGDWRVNGGYLYTTLLYNVSVSLALYGLFLFYFATRELL 64
+VKP+ A + IILQ+ G Y +G + + GYLY T++YN+SVSLALY L LFY A ++ L
Sbjct: 138 VVVKPLCAILAIILQAFGVYGEGSFSPDSGYLYLTIIYNISVSLALYCLVLFYKALKDEL 197
Query: 65 TPFDPVLKFCTIKSVIFLSFWQGVLLAVLEKVMIIEPLIDATGRPTSAGTVSAGYQNLLI 124
PF P+LKF IK +IF SFWQGVL+++L + +I+P +SAG QN LI
Sbjct: 198 APFKPLLKFLCIKLIIFFSFWQGVLISILVSLGLIKPTEAWEE-----PELSAGIQNFLI 252
Query: 125 CIEMFFASWALRAAFPWGVY 144
CIEMF + A AFP+ Y
Sbjct: 253 CIEMFIFAIAHLYAFPYKPY 272
Score = 100 bits (252), Expect = 6e-25
Identities = 38/83 (45%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 167 KLLTPFDPVLKFCTIKSVIFLSFWQGVLLAVLEKVMIIEPLIDATGRPTSAGTVSAGYQN 226
L PF P+LKF IK +IF SFWQGVL+++L + +I+P +SAG QN
Sbjct: 195 DELAPFKPLLKFLCIKLIIFFSFWQGVLISILVSLGLIKPTEAWEE-----PELSAGIQN 249
Query: 227 LLICIEMFFASWALRAAFPWGVY 249
LICIEMF + A AFP+ Y
Sbjct: 250 FLICIEMFIFAIAHLYAFPYKPY 272
>gnl|CDD|237278 PRK13029, PRK13029, 2-oxoacid ferredoxin oxidoreductase;
Provisional.
Length = 1186
Score = 29.8 bits (67), Expect = 2.1
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 217 AGTVSAGYQNLLICIEMFFASWAL-RAAFPWGVYASGHVTDAA----GRSVTMQSISSSL 271
G V L IE+ + RAAF WG A+ AA G + Q+I
Sbjct: 908 KGWVPLSLDALERAIELNGVAVDSNRAAFEWGRLAAHDGAAAARADGGEAAARQAIVFQR 967
Query: 272 KETM 275
E++
Sbjct: 968 PESL 971
>gnl|CDD|172540 PRK14048, PRK14048, ferrichrome/ferrioxamine B periplasmic
transporter; Provisional.
Length = 374
Score = 29.1 bits (65), Expect = 3.3
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 122 LLICIEMFFASWALRAAFPWGVYASGHVTDAAGRSVTMQSISSSLKLLTPFDPV-LKFCT 180
L+ + + F + + A W + VTDA GR VT+ + ++ L + F+ + L
Sbjct: 11 LVAFLAIAFLALSALAEVQWPM----TVTDAVGREVTIPAPPKAVLLGSGFNLIALSLIH 66
Query: 181 IKSVIFLSFWQG 192
V L+ W G
Sbjct: 67 PDPVSLLAGWSG 78
>gnl|CDD|119423 cd05163, TRRAP, TRansformation/tRanscription domain-Associated
Protein (TRRAP), pseudokinase domain; The TRRAP
catalytic domain is part of a larger superfamily that
includes the catalytic domains of other kinases such as
the typical serine/threonine/tyrosine protein kinases
(PKs), aminoglycoside phosphotransferase, choline
kinase, and RIO kinases. TRRAP shows some similarity to
members of the phosphoinositide 3-kinase-related protein
kinase (PIKK) subfamily in that it contains a FATC
(FRAP, ATM and TRRAP, C-terminal) domain and has a large
molecular weight. Unlike PIKK proteins, however, it
contains an inactive PI3K-like pseudokinase domain,
which lacks the conserved residues necessary for ATP
binding and catalytic activity. TRRAP also contains many
motifs that may be critical for protein-protein
interactions. TRRAP is a common component of many
histone acetyltransferase (HAT) complexes, and is
responsible for the recruitment of these complexes to
chromatin during transcription, replication, and DNA
repair. TRRAP also exists in non-HAT complexes such as
the p400 and MRN complexes, which are implicated in
ATP-dependent remodeling and DNA repair, respectively.
Length = 253
Score = 28.8 bits (65), Expect = 3.4
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 7/46 (15%)
Query: 257 AAGRSVTMQSISSSLKETMN-------PKDIMTDAIHNFHPQYQQY 295
+++Q I E N P I+ + I + P YQ Y
Sbjct: 90 DDPSYISLQEIYEDKLEIYNEIQKDMVPDTILKNYILSTFPTYQDY 135
>gnl|CDD|146471 pfam03857, Colicin_im, Colicin immunity protein. Colicin
immunity proteins are plasmid-encoded proteins
necessary for protecting the cell against colicins.
Colicins are toxins released by bacteria during times
of stress.
Length = 138
Score = 28.2 bits (63), Expect = 3.4
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 41 LYNVSVSLALYGLFLFYFATRELLTPFDP--VLKFCTIKSVIFLSF 84
+Y + L LF+ F TREL+ VL+ C + +++ S
Sbjct: 32 IYCKTAPLLALILFILTFKTRELIKKTSRNRVLRSCLLSPILYASM 77
>gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V).
Other tRNA synthetase sub-families are too dissimilar to
be included.
Length = 606
Score = 28.9 bits (65), Expect = 3.7
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 10/58 (17%)
Query: 233 MFFASWALRAAFPW-GVYASGHVTDAAGRSVTMQSISSSLKETMNPKDIM----TDAI 285
M AL + P+ V G V D GR +S SL ++P D++ DA+
Sbjct: 538 MIVLGTALTGSAPYKNVLVHGLVRDEQGR-----KMSKSLGNVIDPLDVIDKYGADAL 590
>gnl|CDD|204301 pfam09735, Nckap1, Membrane-associated apoptosis protein.
Expression of this protein was found to be markedly
reduced in patients with Alzheimer's disease. It is
involved in the regulation of actin polymerisation in
the brain as part of a WAVE2 signalling complex.
Length = 1118
Score = 28.9 bits (65), Expect = 4.1
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 162 ISSSLKLLTPFDPVLKFCTIKSVI--FLSFWQGVLLAVLE 199
+++ LK L+ D VLK I VI F Q L AVLE
Sbjct: 885 MAALLKRLSDADNVLKRMIIIGVILSFRDLAQEALRAVLE 924
>gnl|CDD|143401 cd07082, ALDH_F11_NP-GAPDH, NADP+-dependent non-phosphorylating
glyceraldehyde 3-phosphate dehydrogenase and ALDH family
11. NADP+-dependent non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase (NP-GAPDH, EC=1.2.1.9)
catalyzes the irreversible oxidation of glyceraldehyde
3-phosphate to 3-phosphoglycerate generating NADPH for
biosynthetic reactions. This CD also includes the
Arabidopsis thaliana osmotic-stress-inducible ALDH
family 11, ALDH11A3 and similar sequences. In
autotrophic eukaryotes, NP-GAPDH generates NADPH for
biosynthetic processes from photosynthetic
glyceraldehyde-3-phosphate exported from the chloroplast
and catalyzes one of the classic glycolytic bypass
reactions unique to plants.
Length = 473
Score = 27.9 bits (63), Expect = 7.2
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 11/53 (20%)
Query: 27 GDWRVNGGYLYTTLLYNVSVSLALYGLFLFYFATRELLTPFDPVLKFCTIKSV 79
G R G +Y TLL V+ + L E PF PVL + +
Sbjct: 350 GGGREGGNLIYPTLLDPVTPDMRLA---------WE--EPFGPVLPIIRVNDI 391
>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase.
Length = 666
Score = 27.7 bits (61), Expect = 8.5
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 40 LLYNVSVSLALYGLFLFYFATRELLTPFDPVLKFCTIKSVIFLSFWQGVLLAVLEKVMII 99
LL + + +L + ++L Y L FD V++ C I+ + FW+G + ++E + +
Sbjct: 258 LLKSANAALTVKDVYLSYLP---LAHIFDRVIEECFIQHGAAIGFWRGDVKLLIEDLGEL 314
Query: 100 EPLI 103
+P I
Sbjct: 315 KPTI 318
>gnl|CDD|236566 PRK09558, ushA, bifunctional UDP-sugar hydrolase/5'-nucleotidase
periplasmic precursor; Reviewed.
Length = 551
Score = 27.6 bits (62), Expect = 9.2
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 14 VIIILQSMGHYHDGDWRVN 32
VII L MGHY DG+ N
Sbjct: 212 VIIALTHMGHYDDGEHGSN 230
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.138 0.428
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,654,613
Number of extensions: 1507580
Number of successful extensions: 1811
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1805
Number of HSP's successfully gapped: 40
Length of query: 305
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 208
Effective length of database: 6,635,264
Effective search space: 1380134912
Effective search space used: 1380134912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (26.4 bits)