RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy4905
         (305 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 40.7 bits (94), Expect = 1e-04
 Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 9/31 (29%)

Query: 160 QSI---SSSLKLLTPFD--PVLKFCTIKSVI 185
           Q++    +SLKL    D  P L    IK+ +
Sbjct: 20  QALKKLQASLKLYAD-DSAPAL---AIKATM 46


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 35.4 bits (81), Expect = 0.027
 Identities = 60/358 (16%), Positives = 107/358 (29%), Gaps = 128/358 (35%)

Query: 6   LVKPIMAFVIIILQSMG--------HYHDG----DW------RVNGGYLYTTLLYNVSVS 47
           LV  ++ F    L  +          +  G    +W        +  YL +     + +S
Sbjct: 183 LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS-----IPIS 237

Query: 48  LALYGL--FLFYFATRELL--TP--FDPVLK------------------------FCTIK 77
             L G+     Y  T +LL  TP      LK                        F +++
Sbjct: 238 CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVR 297

Query: 78  SVIFLSFWQGV--LLAV----LEKVMIIEPLIDATGRPTSAGTVSAGYQNLLIC-IEMFF 130
             I + F+ GV    A     L   ++ + L +  G P+   ++S   Q  +   +    
Sbjct: 298 KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN--- 354

Query: 131 ASWALRAAFPWG--VYAS-----------GHVTDAAGRSVTMQSISSSLKLL---TPFDP 174
                 +  P G  V  S           G      G ++T++   +   L     PF  
Sbjct: 355 ---KTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE 411

Query: 175 -VLKFCTIKSVIFLSFWQGVLLAVLEKVMIIEP-----LIDATGRPTSAGTVSAGYQNLL 228
             LKF    S  FL               +  P     L+ A+                L
Sbjct: 412 RKLKF----SNRFLP--------------VASPFHSHLLVPAS----------DLINKDL 443

Query: 229 ICIEMFFASWALRAAFPWGVYASGHVTDAAGRSVTMQSISSSLKETMNPKDIMTDAIH 286
           +   + F +  ++   P  VY      D +     ++ +S S+ E +    I+   + 
Sbjct: 444 VKNNVSFNAKDIQ--IP--VY---DTFDGS----DLRVLSGSISERIVD-CIIRLPVK 489



 Score = 28.5 bits (63), Expect = 3.7
 Identities = 35/180 (19%), Positives = 61/180 (33%), Gaps = 42/180 (23%)

Query: 40  LLYNVSVSLA-LYGLF------LFYFA-TRELLTPFDPVLK-FCTIKSVIFLSFWQGVLL 90
           L   V    A L  +F        YF   R+L   +  ++       +       +  L 
Sbjct: 145 LFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLD 204

Query: 91  A--VLEKVM-IIEPLIDATGRP-----TSAGTVS---------AGYQNLLICIEMFFASW 133
           A  V  + + I+E L + +  P      S   +S         A Y  ++    + F   
Sbjct: 205 AEKVFTQGLNILEWLENPSNTPDKDYLLSI-PISCPLIGVIQLAHY--VVTAKLLGFTPG 261

Query: 134 ALRAAFPWGVYASGHVTDAAGRSVTMQSISSSLKLLTPFDPVLKFCTIKSVIFLSFWQGV 193
            LR+       A+GH        VT  +I+ +      F     F +++  I + F+ GV
Sbjct: 262 ELRSYLKG---ATGHSQGL----VTAVAIAET-DSWESF-----FVSVRKAITVLFFIGV 308


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 34.8 bits (79), Expect = 0.032
 Identities = 41/239 (17%), Positives = 65/239 (27%), Gaps = 78/239 (32%)

Query: 14  VIIILQSMGHYHDGDWRVNGGYLYTTLLYNVSVSLALYGLFLFYFATRELLTPFDPVL-- 71
           V+ +LQ + +  D +W     +     L   S+   L  L         LL     VL  
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-----VLLN 252

Query: 72  --------KF---CTI------KSVI-FLS---------------FWQGVLLAVLEKV-- 96
                    F   C I      K V  FLS                    + ++L K   
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 97  MIIEPLIDATGRPTSAGTVSAGYQNLLICIEMFFASWALRAAFP--WGVYASGHVTDAAG 154
              + L      P    T +       +   +              W  +   HV     
Sbjct: 313 CRPQDL------PREVLTTNP----RRLS--II---AESIRDGLATWDNWK--HVNCDK- 354

Query: 155 RSVTMQSISSSLKLLTPFDPVLKFCTIKSVIF----------LS-FWQGVLLAVLEKVM 202
                  I SSL +L P +   +    +  +F          LS  W  V+ + +  V+
Sbjct: 355 ---LTTIIESSLNVLEPAE--YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.326    0.138    0.428 

Gapped
Lambda     K      H
   0.267   0.0541    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,705,504
Number of extensions: 273317
Number of successful extensions: 594
Number of sequences better than 10.0: 1
Number of HSP's gapped: 593
Number of HSP's successfully gapped: 4
Length of query: 305
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 212
Effective length of database: 4,105,140
Effective search space: 870289680
Effective search space used: 870289680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.2 bits)