RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4905
         (305 letters)



>d2hjsa2 d.81.1.1 (A:130-319) Usg-1 protein homolog PA3116
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 190

 Score = 25.1 bits (54), Expect = 9.7
 Identities = 8/44 (18%), Positives = 13/44 (29%)

Query: 262 VTMQSISSSLKETMNPKDIMTDAIHNFHPQYQQYTQYSSENNQC 305
               S+SS  +E +      T  + N  P   +        N  
Sbjct: 26  TACLSVSSLGREGVKELARQTAELLNARPLEPRLFDRQIAFNLL 69


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.138    0.428 

Gapped
Lambda     K      H
   0.267   0.0539    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,135,267
Number of extensions: 49554
Number of successful extensions: 120
Number of sequences better than 10.0: 1
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 4
Length of query: 305
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 220
Effective length of database: 1,240,546
Effective search space: 272920120
Effective search space used: 272920120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.6 bits)