BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4906
(144 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O75175|CNOT3_HUMAN CCR4-NOT transcription complex subunit 3 OS=Homo sapiens GN=CNOT3
PE=1 SV=1
Length = 753
Score = 232 bits (592), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 110/132 (83%), Positives = 119/132 (90%)
Query: 9 QGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIA 68
QGEIDRCLKKVSEGVE FEDIWQK+HNA N+NQKEKYEADLKKEIKKLQRLRDQIK+W+A
Sbjct: 8 QGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRDQIKTWVA 67
Query: 69 SAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTW 128
S EIKDK L+D RKLIETQMERFKVVERETKTKAYSKEGLG QK+DPAQKEKEE+ W
Sbjct: 68 SNEIKDKRQLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKEKEEVGQW 127
Query: 129 LVTSIDALNIQV 140
L +ID LN+QV
Sbjct: 128 LTNTIDTLNMQV 139
>sp|Q8K0V4|CNOT3_MOUSE CCR4-NOT transcription complex subunit 3 OS=Mus musculus GN=Cnot3
PE=1 SV=1
Length = 751
Score = 231 bits (588), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 109/132 (82%), Positives = 119/132 (90%)
Query: 9 QGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIA 68
QGEIDRCLKKVSEGVE FEDIWQK+HNA N+NQKEKYEADLKKEIKKLQRLRDQIK+W+A
Sbjct: 8 QGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRDQIKTWVA 67
Query: 69 SAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTW 128
S EIKDK L++ RKLIETQMERFKVVERETKTKAYSKEGLG QK+DPAQKEKEE+ W
Sbjct: 68 SNEIKDKRQLIENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKEKEEVGQW 127
Query: 129 LVTSIDALNIQV 140
L +ID LN+QV
Sbjct: 128 LTNTIDTLNMQV 139
>sp|O13870|NOT3_SCHPO General negative regulator of transcription subunit 3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=not3 PE=1 SV=2
Length = 640
Score = 136 bits (343), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 66/132 (50%), Positives = 96/132 (72%)
Query: 9 QGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIA 68
Q EI++ KKV++G+ F+++++K+ + + +QKEK E DLK +IKKLQRLRDQIK+W +
Sbjct: 7 QVEIEKTFKKVTDGIAIFDEVYEKLSASNSVSQKEKLEGDLKTQIKKLQRLRDQIKTWAS 66
Query: 69 SAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTW 128
S +IKDK LL+ R+LIE +ME FK VERE K KA+SKEGL K+DP +KEK++ W
Sbjct: 67 SNDIKDKKALLENRRLIEAKMEEFKAVEREMKIKAFSKEGLSIASKLDPKEKEKQDTIQW 126
Query: 129 LVTSIDALNIQV 140
+ +++ L Q
Sbjct: 127 ISNAVEELERQA 138
>sp|P06102|NOT3_YEAST General negative regulator of transcription subunit 3
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=NOT3 PE=1 SV=2
Length = 836
Score = 130 bits (326), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 97/136 (71%), Gaps = 1/136 (0%)
Query: 9 QGEIDRCLKKVSEGVETFEDIWQKVHNATNS-NQKEKYEADLKKEIKKLQRLRDQIKSWI 67
Q E+DR KK++EG+E F +++ + TN+ +QK+K E+DLK+E+KKLQRLR+QIKSW
Sbjct: 7 QQEVDRVFKKINEGLEIFNSYYERHESCTNNPSQKDKLESDLKREVKKLQRLREQIKSWQ 66
Query: 68 ASAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEIST 127
+S +IKDK +LLDYR+ +E ME++K VE+ +K KAYS L + +DP ++E+ +IS
Sbjct: 67 SSPDIKDKDSLLDYRRSVEIAMEKYKAVEKASKEKAYSNISLKKSETLDPQERERRDISE 126
Query: 128 WLVTSIDALNIQVSSV 143
+L ID L Q S+
Sbjct: 127 YLSQMIDELERQYDSL 142
>sp|Q12514|NOT5_YEAST General negative regulator of transcription subunit 5
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=NOT5 PE=1 SV=1
Length = 560
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/136 (46%), Positives = 93/136 (68%), Gaps = 4/136 (2%)
Query: 9 QGEIDRCLKKVSEGVETFEDIWQKVH--NATNSNQKEKYEADLKKEIKKLQRLRDQIKSW 66
Q +ID+ LKKV EG+E F+DI++K + +NS+ +EK E+DLK+EIKKLQ+ RDQIK+W
Sbjct: 7 QQDIDKLLKKVKEGIEDFDDIYEKFQSTDPSNSSHREKLESDLKREIKKLQKHRDQIKTW 66
Query: 67 IASAEIKDK-STLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKM-DPAQKEKEE 124
++ ++KDK S L+ R+LIE MERFK VE+ KTK +SKE L + DP + +K +
Sbjct: 67 LSKEDVKDKQSVLMTNRRLIENGMERFKSVEKLMKTKQFSKEALTNPDIIKDPKELKKRD 126
Query: 125 ISTWLVTSIDALNIQV 140
++ +D L Q+
Sbjct: 127 QVLFIHDCLDELQKQL 142
>sp|O29106|VATI_ARCFU V-type ATP synthase subunit I OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=atpI PE=3 SV=1
Length = 676
Score = 36.2 bits (82), Expect = 0.068, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 43 EKYEA---DLKKEIKKLQRLRDQIKSWIASAEIKDKSTLLDYRKLIETQMERFKVVERET 99
E +EA +++KEI+ L+ ++Q++ I ++K+ TLL + + +QM+++++ R
Sbjct: 210 EDFEAKISEIEKEIESLKSRKEQVEKEIEEVKVKEAETLLAIEEYLSSQMDKYELPLRTL 269
Query: 100 KTK 102
+K
Sbjct: 270 VSK 272
>sp|A9B3R2|LON2_HERA2 Lon protease 2 OS=Herpetosiphon aurantiacus (strain ATCC 23779 /
DSM 785) GN=lon2 PE=3 SV=1
Length = 815
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 26/144 (18%)
Query: 11 EIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQR---LRDQIKSWI 67
E++ L+++S + D+ + H+ N QKE + K QR LR+Q+K+
Sbjct: 196 EVEERLRRLSVVLSQEIDVLELEHHIQNQVQKE---------VDKSQRDFFLREQLKAIQ 246
Query: 68 ASAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEIST 127
+D T R+L E +R K +A + E LG ++ M PA E I T
Sbjct: 247 TELGQEDPLT----RELNELH-DRIVAANLPAKAQAKALEELGRLEMMPPAAPEYSVIRT 301
Query: 128 ---------WLVTSIDALNIQVSS 142
W TS D +++V++
Sbjct: 302 YLDWLLELPWSKTSADVADLEVAA 325
>sp|Q00PJ1|CTTB2_ATEAB Cortactin-binding protein 2 OS=Atelerix albiventris GN=CTTNBP2 PE=3
SV=1
Length = 1654
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 53/104 (50%), Gaps = 11/104 (10%)
Query: 17 KKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIASAEIKDKS 76
K++SE E + K+H ++E + ADLK+EI K++++ +Q+K S K
Sbjct: 229 KQLSEFDTEREQLRAKLH------REEAHTADLKEEIDKMKKMIEQLKRGSDS-----KP 277
Query: 77 TLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQK 120
L RK + ++ V + TK+ + + A++ ++P +K
Sbjct: 278 GLSLPRKTKDRRLISVSVGTEVSVTKSVACQTDSAIESIEPVKK 321
>sp|A6Q1W3|RSMG_NITSB Ribosomal RNA small subunit methyltransferase G OS=Nitratiruptor
sp. (strain SB155-2) GN=rsmG PE=3 SV=1
Length = 181
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 30 WQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKS 65
W K+HN T S +E+ + +++ + LQ L D I++
Sbjct: 17 WNKIHNLTGSKSEEEVQENIEDALFALQFLPDTIQN 52
>sp|P06526|TDT_BOVIN DNA nucleotidylexotransferase OS=Bos taurus GN=DNTT PE=1 SV=2
Length = 509
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 74 DKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAV----QKMDPAQKEKEEISTWL 129
+K LL Y L+E+ E+FK+ R+ T + ++ + Q++D ++ ++E TW
Sbjct: 369 EKKGLLLYYDLVESTFEKFKLPSRQVDTLDHFQKCFLILKLHHQRVDSSKSNQQEGKTWK 428
Query: 130 VTSID 134
+D
Sbjct: 429 AIRVD 433
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.126 0.345
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,396,427
Number of Sequences: 539616
Number of extensions: 1820167
Number of successful extensions: 8302
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 244
Number of HSP's that attempted gapping in prelim test: 8134
Number of HSP's gapped (non-prelim): 400
length of query: 144
length of database: 191,569,459
effective HSP length: 106
effective length of query: 38
effective length of database: 134,370,163
effective search space: 5106066194
effective search space used: 5106066194
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)