Your job contains 1 sequence.
>psy4906
MYRTYPGRQGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLR
DQIKSWIASAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQK
EKEEISTWLVTSIDALNIQVSSVA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy4906
(144 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|E1BCS1 - symbol:CNOT3 "Uncharacterized protein"... 575 8.6e-56 1
UNIPROTKB|E2R344 - symbol:CNOT3 "Uncharacterized protein"... 575 8.6e-56 1
UNIPROTKB|F6XXD6 - symbol:CNOT3 "Uncharacterized protein"... 575 8.6e-56 1
UNIPROTKB|O75175 - symbol:CNOT3 "CCR4-NOT transcription c... 575 8.6e-56 1
UNIPROTKB|F1RNH3 - symbol:CNOT3 "Uncharacterized protein"... 575 8.6e-56 1
MGI|MGI:2385261 - symbol:Cnot3 "CCR4-NOT transcription co... 571 2.3e-55 1
RGD|1304771 - symbol:Cnot3 "CCR4-NOT transcription comple... 571 2.3e-55 1
FB|FBgn0033029 - symbol:l(2)NC136 "lethal (2) NC136" spec... 560 8.5e-54 1
ZFIN|ZDB-GENE-040927-6 - symbol:cnot3a "CCR4-NOT transcri... 559 1.8e-53 1
ZFIN|ZDB-GENE-030131-5838 - symbol:cnot3b "CCR4-NOT trans... 559 1.9e-53 1
TAIR|locus:2172389 - symbol:AT5G18230 species:3702 "Arabi... 413 1.1e-37 1
WB|WBGene00003826 - symbol:ntl-3 species:6239 "Caenorhabd... 398 2.4e-36 1
UNIPROTKB|G5EFX8 - symbol:ntl-3 "Protein NTL-3, isoform a... 398 2.4e-36 1
ASPGD|ASPL0000074489 - symbol:AN4585 species:162425 "Emer... 380 1.2e-34 1
POMBASE|SPAC1B3.05 - symbol:not3 "CCR4-Not complex subuni... 359 3.1e-32 1
SGD|S000001300 - symbol:NOT3 "Component of the CCR4-NOT t... 338 1.3e-29 1
SGD|S000006276 - symbol:NOT5 "Component of the CCR4-NOT t... 292 4.1e-25 1
DICTYBASE|DDB_G0272056 - symbol:DDB_G0272056 "putative CC... 290 1.9e-24 1
UNIPROTKB|H7C148 - symbol:CNOT3 "CCR4-NOT transcription c... 248 4.4e-21 1
CGD|CAL0002492 - symbol:NOT5 species:5476 "Candida albica... 249 2.9e-20 1
UNIPROTKB|Q5A755 - symbol:NOT5 "Potential mRNA deadenylas... 249 2.9e-20 1
UNIPROTKB|H7C3F5 - symbol:CNOT3 "CCR4-NOT transcription c... 238 4.4e-20 1
>UNIPROTKB|E1BCS1 [details] [associations]
symbol:CNOT3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005634
GO:GO:0006355 GO:GO:0000932 CTD:4849 KO:K12580
GeneTree:ENSGT00390000014743 OMA:ESIYHLP EMBL:DAAA02047818
IPI:IPI00685943 RefSeq:XP_002695478.1 Ensembl:ENSBTAT00000019836
GeneID:527305 KEGG:bta:527305 NextBio:20874556 Uniprot:E1BCS1
Length = 744
Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
Identities = 110/132 (83%), Positives = 119/132 (90%)
Query: 9 QGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIA 68
QGEIDRCLKKVSEGVE FEDIWQK+HNA N+NQKEKYEADLKKEIKKLQRLRDQIK+W+A
Sbjct: 8 QGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRDQIKTWVA 67
Query: 69 SAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTW 128
S EIKDK L+D RKLIETQMERFKVVERETKTKAYSKEGLG QK+DPAQKEKEE+ W
Sbjct: 68 SNEIKDKRQLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKEKEEVGQW 127
Query: 129 LVTSIDALNIQV 140
L +ID LN+QV
Sbjct: 128 LTNTIDTLNMQV 139
>UNIPROTKB|E2R344 [details] [associations]
symbol:CNOT3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005634
GO:GO:0006355 Ensembl:ENSCAFT00000004262 Uniprot:E2R344
Length = 710
Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
Identities = 110/132 (83%), Positives = 119/132 (90%)
Query: 9 QGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIA 68
QGEIDRCLKKVSEGVE FEDIWQK+HNA N+NQKEKYEADLKKEIKKLQRLRDQIK+W+A
Sbjct: 8 QGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRDQIKTWVA 67
Query: 69 SAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTW 128
S EIKDK L+D RKLIETQMERFKVVERETKTKAYSKEGLG QK+DPAQKEKEE+ W
Sbjct: 68 SNEIKDKRQLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKEKEEVGQW 127
Query: 129 LVTSIDALNIQV 140
L +ID LN+QV
Sbjct: 128 LTNTIDTLNMQV 139
>UNIPROTKB|F6XXD6 [details] [associations]
symbol:CNOT3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005634
GO:GO:0006355 CTD:4849 KO:K12580 GeneTree:ENSGT00390000014743
OMA:ESIYHLP EMBL:AAEX03000741 Ensembl:ENSCAFT00000004262
RefSeq:XP_541428.3 GeneID:484312 KEGG:cfa:484312 Uniprot:F6XXD6
Length = 753
Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
Identities = 110/132 (83%), Positives = 119/132 (90%)
Query: 9 QGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIA 68
QGEIDRCLKKVSEGVE FEDIWQK+HNA N+NQKEKYEADLKKEIKKLQRLRDQIK+W+A
Sbjct: 8 QGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRDQIKTWVA 67
Query: 69 SAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTW 128
S EIKDK L+D RKLIETQMERFKVVERETKTKAYSKEGLG QK+DPAQKEKEE+ W
Sbjct: 68 SNEIKDKRQLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKEKEEVGQW 127
Query: 129 LVTSIDALNIQV 140
L +ID LN+QV
Sbjct: 128 LTNTIDTLNMQV 139
>UNIPROTKB|O75175 [details] [associations]
symbol:CNOT3 "CCR4-NOT transcription complex subunit 3"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=ISS]
[GO:2000036 "regulation of stem cell maintenance" evidence=IMP]
[GO:0030014 "CCR4-NOT complex" evidence=IDA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0006351 GO:GO:0000932
GO:GO:0000289 EMBL:AF180474 EMBL:AB014591 EMBL:AL133647
EMBL:BC016474 IPI:IPI00005015 IPI:IPI00186188 IPI:IPI00478453
PIR:T43456 RefSeq:NP_055331.1 UniGene:Hs.343571
ProteinModelPortal:O75175 DIP:DIP-40297N IntAct:O75175
MINT:MINT-1439009 STRING:O75175 PhosphoSite:O75175 PaxDb:O75175
PRIDE:O75175 Ensembl:ENST00000221232 Ensembl:ENST00000358389
Ensembl:ENST00000406403 Ensembl:ENST00000570333
Ensembl:ENST00000570863 Ensembl:ENST00000570970
Ensembl:ENST00000570997 Ensembl:ENST00000571055
Ensembl:ENST00000571119 Ensembl:ENST00000572058
Ensembl:ENST00000572589 Ensembl:ENST00000572598
Ensembl:ENST00000572852 Ensembl:ENST00000573388
Ensembl:ENST00000573528 Ensembl:ENST00000573769
Ensembl:ENST00000574556 Ensembl:ENST00000574815
Ensembl:ENST00000574965 Ensembl:ENST00000575585
Ensembl:ENST00000576314 Ensembl:ENST00000576558
Ensembl:ENST00000576765 Ensembl:ENST00000577005 GeneID:4849
KEGG:hsa:4849 UCSC:uc002qdj.2 CTD:4849 GeneCards:GC19P054641
HGNC:HGNC:7879 HPA:HPA006408 MIM:604910 neXtProt:NX_O75175
PharmGKB:PA26674 eggNOG:COG5665 HOGENOM:HOG000184850
HOVERGEN:HBG051042 InParanoid:O75175 KO:K12580 OMA:IFYYLEP
OrthoDB:EOG41JZDJ PhylomeDB:O75175 GenomeRNAi:4849 NextBio:18674
ArrayExpress:O75175 Bgee:O75175 CleanEx:HS_CNOT3
Genevestigator:O75175 GermOnline:ENSG00000088038 Uniprot:O75175
Length = 753
Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
Identities = 110/132 (83%), Positives = 119/132 (90%)
Query: 9 QGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIA 68
QGEIDRCLKKVSEGVE FEDIWQK+HNA N+NQKEKYEADLKKEIKKLQRLRDQIK+W+A
Sbjct: 8 QGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRDQIKTWVA 67
Query: 69 SAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTW 128
S EIKDK L+D RKLIETQMERFKVVERETKTKAYSKEGLG QK+DPAQKEKEE+ W
Sbjct: 68 SNEIKDKRQLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKEKEEVGQW 127
Query: 129 LVTSIDALNIQV 140
L +ID LN+QV
Sbjct: 128 LTNTIDTLNMQV 139
>UNIPROTKB|F1RNH3 [details] [associations]
symbol:CNOT3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005634
GO:GO:0006355 GO:GO:0000932 CTD:4849 KO:K12580 OMA:IFYYLEP
GeneTree:ENSGT00390000014743 EMBL:FP476135 RefSeq:XP_003356092.1
Ensembl:ENSSSCT00000003625 GeneID:100520963 KEGG:ssc:100520963
Uniprot:F1RNH3
Length = 719
Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
Identities = 110/132 (83%), Positives = 119/132 (90%)
Query: 9 QGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIA 68
QGEIDRCLKKVSEGVE FEDIWQK+HNA N+NQKEKYEADLKKEIKKLQRLRDQIK+W+A
Sbjct: 8 QGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRDQIKTWVA 67
Query: 69 SAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTW 128
S EIKDK L+D RKLIETQMERFKVVERETKTKAYSKEGLG QK+DPAQKEKEE+ W
Sbjct: 68 SNEIKDKRQLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKEKEEVGQW 127
Query: 129 LVTSIDALNIQV 140
L +ID LN+QV
Sbjct: 128 LTNTIDTLNMQV 139
>MGI|MGI:2385261 [details] [associations]
symbol:Cnot3 "CCR4-NOT transcription complex, subunit 3"
species:10090 "Mus musculus" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030014 "CCR4-NOT
complex" evidence=ISO] [GO:2000036 "regulation of stem cell
maintenance" evidence=ISO] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
MGI:MGI:2385261 GO:GO:0005634 GO:GO:0006355 GO:GO:0006351
GO:GO:0000932 CTD:4849 eggNOG:COG5665 HOGENOM:HOG000184850
HOVERGEN:HBG051042 KO:K12580 OrthoDB:EOG41JZDJ EMBL:BC030332
EMBL:BC053437 EMBL:BC141041 IPI:IPI00169667 RefSeq:NP_666288.1
UniGene:Mm.358731 ProteinModelPortal:Q8K0V4 DIP:DIP-46844N
IntAct:Q8K0V4 STRING:Q8K0V4 PhosphoSite:Q8K0V4 PaxDb:Q8K0V4
PRIDE:Q8K0V4 Ensembl:ENSMUST00000038913 GeneID:232791
KEGG:mmu:232791 UCSC:uc009evl.2 GeneTree:ENSGT00390000014743
InParanoid:B2RUA7 OMA:ESIYHLP NextBio:381230 Bgee:Q8K0V4
CleanEx:MM_CNOT3 Genevestigator:Q8K0V4
GermOnline:ENSMUSG00000035632 Uniprot:Q8K0V4
Length = 751
Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
Identities = 109/132 (82%), Positives = 119/132 (90%)
Query: 9 QGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIA 68
QGEIDRCLKKVSEGVE FEDIWQK+HNA N+NQKEKYEADLKKEIKKLQRLRDQIK+W+A
Sbjct: 8 QGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRDQIKTWVA 67
Query: 69 SAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTW 128
S EIKDK L++ RKLIETQMERFKVVERETKTKAYSKEGLG QK+DPAQKEKEE+ W
Sbjct: 68 SNEIKDKRQLIENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKEKEEVGQW 127
Query: 129 LVTSIDALNIQV 140
L +ID LN+QV
Sbjct: 128 LTNTIDTLNMQV 139
>RGD|1304771 [details] [associations]
symbol:Cnot3 "CCR4-NOT transcription complex, subunit 3"
species:10116 "Rattus norvegicus" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
RGD:1304771 GO:GO:0005634 GO:GO:0006355 GO:GO:0000932 CTD:4849
KO:K12580 OrthoDB:EOG41JZDJ OMA:ESIYHLP EMBL:AC103574 EMBL:AC126217
IPI:IPI00192709 RefSeq:NP_001100941.2 UniGene:Rn.212216
Ensembl:ENSRNOT00000064411 GeneID:308311 KEGG:rno:308311
UCSC:RGD:1304771 NextBio:658574 ArrayExpress:D3ZXE8 Uniprot:D3ZXE8
Length = 751
Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
Identities = 109/132 (82%), Positives = 119/132 (90%)
Query: 9 QGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIA 68
QGEIDRCLKKVSEGVE FEDIWQK+HNA N+NQKEKYEADLKKEIKKLQRLRDQIK+W+A
Sbjct: 8 QGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRDQIKTWVA 67
Query: 69 SAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTW 128
S EIKDK L++ RKLIETQMERFKVVERETKTKAYSKEGLG QK+DPAQKEKEE+ W
Sbjct: 68 SNEIKDKRQLIENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKEKEEVGQW 127
Query: 129 LVTSIDALNIQV 140
L +ID LN+QV
Sbjct: 128 LTNTIDTLNMQV 139
>FB|FBgn0033029 [details] [associations]
symbol:l(2)NC136 "lethal (2) NC136" species:7227 "Drosophila
melanogaster" [GO:0006351 "transcription, DNA-dependent"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030014 "CCR4-NOT complex" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP] [GO:0022008 "neurogenesis"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 EMBL:AE013599
GO:GO:0005634 GO:GO:0005737 GO:GO:0022008 GO:GO:0006355
GO:GO:0030014 GO:GO:0000289 eggNOG:COG5665 KO:K12580
GeneTree:ENSGT00390000014743 OMA:ESIYHLP EMBL:AY069428
EMBL:BT083390 RefSeq:NP_610176.1 UniGene:Dm.2133 IntAct:Q7K126
STRING:Q7K126 EnsemblMetazoa:FBtr0086062 EnsemblMetazoa:FBtr0331970
GeneID:35501 KEGG:dme:Dmel_CG8426 UCSC:CG8426-RA
FlyBase:FBgn0033029 InParanoid:Q7K126 OrthoDB:EOG4NVX23
ChiTaRS:l(2)NC136 GenomeRNAi:35501 NextBio:793729 Uniprot:Q7K126
Length = 844
Score = 560 (202.2 bits), Expect = 8.5e-54, P = 8.5e-54
Identities = 111/137 (81%), Positives = 123/137 (89%)
Query: 9 QGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQK-----EKYEADLKKEIKKLQRLRDQI 63
QGEIDRCLKKV+EGVETFEDIW+KVHNATN+NQK EKYEADLKKEIKKLQRLRDQI
Sbjct: 8 QGEIDRCLKKVAEGVETFEDIWKKVHNATNTNQKQKHLQEKYEADLKKEIKKLQRLRDQI 67
Query: 64 KSWIASAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKE 123
KSWIASAEIKDKS+LL+ R+LIETQMERFKVVERETKTKAYSKEGLGA QKMDPAQ+ K+
Sbjct: 68 KSWIASAEIKDKSSLLENRRLIETQMERFKVVERETKTKAYSKEGLGAAQKMDPAQRIKD 127
Query: 124 EISTWLVTSIDALNIQV 140
+ WL +SI +L IQ+
Sbjct: 128 DARNWLTSSISSLQIQI 144
>ZFIN|ZDB-GENE-040927-6 [details] [associations]
symbol:cnot3a "CCR4-NOT transcription complex,
subunit 3a" species:7955 "Danio rerio" [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
ZFIN:ZDB-GENE-040927-6 GO:GO:0005634 GO:GO:0006355
GeneTree:ENSGT00390000014743 EMBL:CR854927 IPI:IPI00996653
Ensembl:ENSDART00000137699 ArrayExpress:E9QGK5 Bgee:E9QGK5
Uniprot:E9QGK5
Length = 901
Score = 559 (201.8 bits), Expect = 1.8e-53, P = 1.8e-53
Identities = 107/132 (81%), Positives = 118/132 (89%)
Query: 9 QGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIA 68
QGEIDRCLKKV+EGVE FEDIW+K+HNA N+NQKEKYEADLKKEIKKLQRLRDQIK+W+A
Sbjct: 8 QGEIDRCLKKVAEGVEQFEDIWKKLHNAANANQKEKYEADLKKEIKKLQRLRDQIKTWVA 67
Query: 69 SAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTW 128
S EIKDK L++ RKLIETQMERFKVVERETKTKAYSKEGLG QK+DPAQKEKEE W
Sbjct: 68 SNEIKDKRQLVENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKEKEETEQW 127
Query: 129 LVTSIDALNIQV 140
L +ID LN+QV
Sbjct: 128 LTNTIDTLNMQV 139
>ZFIN|ZDB-GENE-030131-5838 [details] [associations]
symbol:cnot3b "CCR4-NOT transcription complex,
subunit 3b" species:7955 "Danio rerio" [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
ZFIN:ZDB-GENE-030131-5838 GO:GO:0005634 GO:GO:0006355
HOVERGEN:HBG051042 KO:K12580 EMBL:BC045499 IPI:IPI00859465
RefSeq:NP_956134.1 UniGene:Dr.6354 ProteinModelPortal:Q7ZVL4
STRING:Q7ZVL4 PRIDE:Q7ZVL4 GeneID:327627 KEGG:dre:327627 CTD:327627
InParanoid:Q7ZVL4 NextBio:20810115 ArrayExpress:Q7ZVL4 Bgee:Q7ZVL4
Uniprot:Q7ZVL4
Length = 908
Score = 559 (201.8 bits), Expect = 1.9e-53, P = 1.9e-53
Identities = 105/132 (79%), Positives = 119/132 (90%)
Query: 9 QGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIA 68
QGEIDRCLKKV+EGVE FEDIW+K+HNA N+NQKEKYE+DLKKEIKKLQRLRDQIK+W+A
Sbjct: 8 QGEIDRCLKKVTEGVEQFEDIWKKLHNAANANQKEKYESDLKKEIKKLQRLRDQIKTWVA 67
Query: 69 SAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTW 128
S EIKDK L++ RKLIETQMERFK+VERETKTKAYSKEGLG QK+DPAQKEKEE+ W
Sbjct: 68 SNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLAQKVDPAQKEKEEVGQW 127
Query: 129 LVTSIDALNIQV 140
L +ID LN+QV
Sbjct: 128 LTNTIDTLNMQV 139
>TAIR|locus:2172389 [details] [associations]
symbol:AT5G18230 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005634
EMBL:CP002688 GO:GO:0006355 KO:K12580 OMA:ESIYHLP IPI:IPI00939040
RefSeq:NP_001154716.1 UniGene:At.7555 ProteinModelPortal:F4JWJ7
PRIDE:F4JWJ7 EnsemblPlants:AT5G18230.2 GeneID:831941
KEGG:ath:AT5G18230 Uniprot:F4JWJ7
Length = 845
Score = 413 (150.4 bits), Expect = 1.1e-37, P = 1.1e-37
Identities = 86/143 (60%), Positives = 102/143 (71%)
Query: 9 QGEIDRCLKKVSEGVETFEDIWQK--VHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSW 66
QGEIDR LKKV EGV+ F+ IW K V++ N NQKEK+EADLKKEIKKLQR RDQIK+W
Sbjct: 8 QGEIDRVLKKVQEGVDVFDSIWNKWNVYDTDNVNQKEKFEADLKKEIKKLQRYRDQIKTW 67
Query: 67 IASAEIKDKS-------TLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQ 119
I S+EIKDK +L+D RKLIE +MERFK+ E+ETKTKA+SKEGLG K DP +
Sbjct: 68 IQSSEIKDKKVSASYEQSLVDARKLIEKEMERFKICEKETKTKAFSKEGLGQQPKTDPKE 127
Query: 120 KEKEEISTWLVTSIDALNIQVSS 142
K K E WL + L Q+ S
Sbjct: 128 KAKSETRDWLNNVVSELESQIDS 150
>WB|WBGene00003826 [details] [associations]
symbol:ntl-3 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0006355 GO:GO:0040035 KO:K12580
GeneTree:ENSGT00390000014743 OMA:ESIYHLP EMBL:AL132860 EMBL:Z92826
RefSeq:NP_001076652.1 UniGene:Cel.9672 ProteinModelPortal:G5EFX8
IntAct:G5EFX8 EnsemblMetazoa:Y56A3A.1a.1 EnsemblMetazoa:Y56A3A.1a.2
GeneID:176614 KEGG:cel:CELE_Y56A3A.1 CTD:176614 WormBase:Y56A3A.1a
NextBio:893304 Uniprot:G5EFX8
Length = 701
Score = 398 (145.2 bits), Expect = 2.4e-36, P = 2.4e-36
Identities = 76/130 (58%), Positives = 98/130 (75%)
Query: 11 EIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIASA 70
EID+C KK+ EGVE FE+ +K+H A + NQ++KY+ DLKKEIKKLQRLRDQ+K+W ++
Sbjct: 10 EIDKCFKKIDEGVELFEETMEKMHEANSDNQRDKYQDDLKKEIKKLQRLRDQVKNWQNAS 69
Query: 71 EIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTWLV 130
EIKDK L YRKLIE +ME+FK VERE KTK +SK GL A +K+DP +KEK E W+
Sbjct: 70 EIKDKDKLNSYRKLIEQRMEQFKDVERENKTKPHSKLGLSAEEKLDPKEKEKAETMDWIQ 129
Query: 131 TSIDALNIQV 140
I +LN +V
Sbjct: 130 HQIRSLNEEV 139
>UNIPROTKB|G5EFX8 [details] [associations]
symbol:ntl-3 "Protein NTL-3, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0006355 GO:GO:0040035 KO:K12580
GeneTree:ENSGT00390000014743 OMA:ESIYHLP EMBL:AL132860 EMBL:Z92826
RefSeq:NP_001076652.1 UniGene:Cel.9672 ProteinModelPortal:G5EFX8
IntAct:G5EFX8 EnsemblMetazoa:Y56A3A.1a.1 EnsemblMetazoa:Y56A3A.1a.2
GeneID:176614 KEGG:cel:CELE_Y56A3A.1 CTD:176614 WormBase:Y56A3A.1a
NextBio:893304 Uniprot:G5EFX8
Length = 701
Score = 398 (145.2 bits), Expect = 2.4e-36, P = 2.4e-36
Identities = 76/130 (58%), Positives = 98/130 (75%)
Query: 11 EIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIASA 70
EID+C KK+ EGVE FE+ +K+H A + NQ++KY+ DLKKEIKKLQRLRDQ+K+W ++
Sbjct: 10 EIDKCFKKIDEGVELFEETMEKMHEANSDNQRDKYQDDLKKEIKKLQRLRDQVKNWQNAS 69
Query: 71 EIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTWLV 130
EIKDK L YRKLIE +ME+FK VERE KTK +SK GL A +K+DP +KEK E W+
Sbjct: 70 EIKDKDKLNSYRKLIEQRMEQFKDVERENKTKPHSKLGLSAEEKLDPKEKEKAETMDWIQ 129
Query: 131 TSIDALNIQV 140
I +LN +V
Sbjct: 130 HQIRSLNEEV 139
>ASPGD|ASPL0000074489 [details] [associations]
symbol:AN4585 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
GO:GO:0005634 GO:GO:0006355 EMBL:BN001303 HOGENOM:HOG000184850
OMA:ESIYHLP EnsemblFungi:CADANIAT00005852 Uniprot:C8V7V5
Length = 616
Score = 380 (138.8 bits), Expect = 1.2e-34, P = 1.2e-34
Identities = 73/135 (54%), Positives = 98/135 (72%)
Query: 9 QGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIA 68
Q EID+ KKV+EG++TFE I++K+ ATN Q++K E +LK+EIKKLQR RDQIKSW +
Sbjct: 7 QQEIDKTFKKVAEGIQTFEGIYEKIRAATNPTQRDKLEENLKREIKKLQRYRDQIKSWAS 66
Query: 69 SAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTW 128
E+KDK LL+ R+ IET ME+FK VE+E KTKAYSKEGL A ++DP KEK E +
Sbjct: 67 GNEVKDKGPLLEQRRAIETCMEQFKAVEKEMKTKAYSKEGLSAASRLDPKDKEKVETCDF 126
Query: 129 LVTSIDALNIQVSSV 143
L +D L ++ ++
Sbjct: 127 LSNMVDELQQKIEAM 141
>POMBASE|SPAC1B3.05 [details] [associations]
symbol:not3 "CCR4-Not complex subunit Not3/5 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0006402 "mRNA
catabolic process" evidence=IC] [GO:0030015 "CCR4-NOT core complex"
evidence=ISO] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
PomBase:SPAC1B3.05 GO:GO:0005829 GO:GO:0005634 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0006357 GO:GO:0006351 GO:GO:0000289
GO:GO:0030015 eggNOG:COG5665 HOGENOM:HOG000184850 PIR:T38023
RefSeq:NP_594789.2 STRING:O13870 EnsemblFungi:SPAC1B3.05.1
GeneID:2542126 OrthoDB:EOG4NW2V3 NextBio:20803198 Uniprot:O13870
Length = 640
Score = 359 (131.4 bits), Expect = 3.1e-32, P = 3.1e-32
Identities = 69/136 (50%), Positives = 100/136 (73%)
Query: 9 QGEIDRCLKKVSEGVETFEDIWQKVHNATNS-NQKEKYEADLKKEIKKLQRLRDQIKSWI 67
Q EI++ KKV++G+ F+++++K+ +A+NS +QKEK E DLK +IKKLQRLRDQIK+W
Sbjct: 7 QVEIEKTFKKVTDGIAIFDEVYEKL-SASNSVSQKEKLEGDLKTQIKKLQRLRDQIKTWA 65
Query: 68 ASAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEIST 127
+S +IKDK LL+ R+LIE +ME FK VERE K KA+SKEGL K+DP +KEK++
Sbjct: 66 SSNDIKDKKALLENRRLIEAKMEEFKAVEREMKIKAFSKEGLSIASKLDPKEKEKQDTIQ 125
Query: 128 WLVTSIDALNIQVSSV 143
W+ +++ L Q +
Sbjct: 126 WISNAVEELERQAELI 141
>SGD|S000001300 [details] [associations]
symbol:NOT3 "Component of the CCR4-NOT transcriptional
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0032968 "positive regulation of transcription elongation from
RNA polymerase II promoter" evidence=IDA;IPI] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IPI] [GO:0030015 "CCR4-NOT core complex"
evidence=IPI] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=IMP] [GO:0016567 "protein ubiquitination"
evidence=IMP] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
SGD:S000001300 GO:GO:0005634 GO:GO:0005737 EMBL:BK006942
GO:GO:0006351 GO:GO:0016567 EMBL:Z46861 GO:GO:0032968 GO:GO:0000289
GO:GO:0030015 eggNOG:COG5665 KO:K12580 GeneTree:ENSGT00390000014743
KO:K10661 RefSeq:NP_012234.3 GeneID:854781 KEGG:sce:YIL030C
OrthoDB:EOG4NW2V3 EMBL:X04289 EMBL:AY692897 PIR:S49940
RefSeq:NP_012226.3 ProteinModelPortal:P06102 DIP:DIP-2256N
IntAct:P06102 MINT:MINT-426406 STRING:P06102 PaxDb:P06102
PeptideAtlas:P06102 EnsemblFungi:YIL038C GeneID:854773
KEGG:sce:YIL038C CYGD:YIL038c HOGENOM:HOG000113831 OMA:MEKYKAV
NextBio:977541 Genevestigator:P06102 GermOnline:YIL038C
Uniprot:P06102
Length = 836
Score = 338 (124.0 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 65/136 (47%), Positives = 97/136 (71%)
Query: 9 QGEIDRCLKKVSEGVETFEDIWQKVHNATNS-NQKEKYEADLKKEIKKLQRLRDQIKSWI 67
Q E+DR KK++EG+E F +++ + TN+ +QK+K E+DLK+E+KKLQRLR+QIKSW
Sbjct: 7 QQEVDRVFKKINEGLEIFNSYYERHESCTNNPSQKDKLESDLKREVKKLQRLREQIKSWQ 66
Query: 68 ASAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEIST 127
+S +IKDK +LLDYR+ +E ME++K VE+ +K KAYS L + +DP ++E+ +IS
Sbjct: 67 SSPDIKDKDSLLDYRRSVEIAMEKYKAVEKASKEKAYSNISLKKSETLDPQERERRDISE 126
Query: 128 WLVTSIDALNIQVSSV 143
+L ID L Q S+
Sbjct: 127 YLSQMIDELERQYDSL 142
>SGD|S000006276 [details] [associations]
symbol:NOT5 "Component of the CCR4-NOT transcriptional
complex" species:4932 "Saccharomyces cerevisiae" [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IPI] [GO:0031087
"deadenylation-independent decapping of nuclear-transcribed mRNA"
evidence=IMP] [GO:0030015 "CCR4-NOT core complex" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IDA;IPI]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0016567 "protein
ubiquitination" evidence=IMP] [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IDA] [GO:0006368 "transcription
elongation from RNA polymerase II promoter" evidence=IMP]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 SGD:S000006276
GO:GO:0005634 GO:GO:0005737 GO:GO:0016567 EMBL:Z71255 EMBL:BK006949
GO:GO:0006368 EMBL:U51033 EMBL:Z49219 GO:GO:0032968 GO:GO:0000289
GO:GO:0030015 eggNOG:COG5665 HOGENOM:HOG000184850
GeneTree:ENSGT00390000014743 GO:GO:0031087 OrthoDB:EOG4NW2V3
EMBL:AY692887 PIR:S54093 RefSeq:NP_015397.1
ProteinModelPortal:Q12514 DIP:DIP-2257N IntAct:Q12514
MINT:MINT-420084 STRING:Q12514 PaxDb:Q12514 PeptideAtlas:Q12514
EnsemblFungi:YPR072W GeneID:856186 KEGG:sce:YPR072W CYGD:YPR072w
OMA:HPTSIFF NextBio:981366 Genevestigator:Q12514 GermOnline:YPR072W
Uniprot:Q12514
Length = 560
Score = 292 (107.8 bits), Expect = 4.1e-25, P = 4.1e-25
Identities = 63/136 (46%), Positives = 93/136 (68%)
Query: 9 QGEIDRCLKKVSEGVETFEDIWQKVHNA--TNSNQKEKYEADLKKEIKKLQRLRDQIKSW 66
Q +ID+ LKKV EG+E F+DI++K + +NS+ +EK E+DLK+EIKKLQ+ RDQIK+W
Sbjct: 7 QQDIDKLLKKVKEGIEDFDDIYEKFQSTDPSNSSHREKLESDLKREIKKLQKHRDQIKTW 66
Query: 67 IASAEIKDK-STLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKM-DPAQKEKEE 124
++ ++KDK S L+ R+LIE MERFK VE+ KTK +SKE L + DP + +K +
Sbjct: 67 LSKEDVKDKQSVLMTNRRLIENGMERFKSVEKLMKTKQFSKEALTNPDIIKDPKELKKRD 126
Query: 125 ISTWLVTSIDALNIQV 140
++ +D L Q+
Sbjct: 127 QVLFIHDCLDELQKQL 142
>DICTYBASE|DDB_G0272056 [details] [associations]
symbol:DDB_G0272056 "putative CCR4-NOT complex
subunit 3" species:44689 "Dictyostelium discoideum" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR007207
InterPro:IPR007282 InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153
PIRSF:PIRSF005290 dictyBase:DDB_G0272056 GO:GO:0005634
GO:GO:0006355 EMBL:AAFI02000007 eggNOG:COG5665 KO:K12580
RefSeq:XP_645358.1 ProteinModelPortal:Q55AA8
EnsemblProtists:DDB0219997 GeneID:8618247 KEGG:ddi:DDB_G0272056
InParanoid:Q55AA8 OMA:GHIKSEE Uniprot:Q55AA8
Length = 866
Score = 290 (107.1 bits), Expect = 1.9e-24, P = 1.9e-24
Identities = 68/146 (46%), Positives = 95/146 (65%)
Query: 9 QGEIDRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIA 68
QGEID+ LKKV++G+ F+ + +KV++A ++NQKEKYE+DLKKEIKKLQR RDQIK+WIA
Sbjct: 7 QGEIDKTLKKVADGIIEFDCVLKKVYSAISTNQKEKYESDLKKEIKKLQRYRDQIKAWIA 66
Query: 69 SAEIKDKSTLLDYRKLIET-----------QMERFKVVER-ETKTKAYSKEGLGAVQKMD 116
S ++K+K+ LL+ RK IE +M+ F+ +ER E K K YSK+G V
Sbjct: 67 SNDVKNKAALLESRKSIEMILINFKKNKIKKMDSFRHLERGEGKGK-YSKDG--GVDSST 123
Query: 117 PAQKEKEEISTWLVTSIDALNIQVSS 142
+ K + TW +I L Q+ S
Sbjct: 124 KDEMAKTHVKTWASKAIATLRAQLES 149
>UNIPROTKB|H7C148 [details] [associations]
symbol:CNOT3 "CCR4-NOT transcription complex subunit 3"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007207 Pfam:PF04065 GO:GO:0005634
GO:GO:0006355 HGNC:HGNC:7879 EMBL:AC012314
ProteinModelPortal:H7C148 Ensembl:ENST00000440571 Uniprot:H7C148
Length = 375
Score = 248 (92.4 bits), Expect = 4.4e-21, P = 4.4e-21
Identities = 48/59 (81%), Positives = 52/59 (88%)
Query: 82 RKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTWLVTSIDALNIQV 140
RKLIETQMERFKVVERETKTKAYSKEGLG QK+DPAQKEKEE+ WL +ID LN+QV
Sbjct: 2 RKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKEKEEVGQWLTNTIDTLNMQV 60
>CGD|CAL0002492 [details] [associations]
symbol:NOT5 species:5476 "Candida albicans" [GO:0030445
"yeast-form cell wall" evidence=IDA] [GO:0009405 "pathogenesis"
evidence=IMP] [GO:0016337 "cell-cell adhesion" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0044182
"filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0030015 "CCR4-NOT core
complex" evidence=IEA] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0031087
"deadenylation-independent decapping of nuclear-transcribed mRNA"
evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 CGD:CAL0002492
GO:GO:0005634 GO:GO:0030445 GO:GO:0071216 GO:GO:0036180
GO:GO:0009405 GO:GO:0006355 GO:GO:0016337 EMBL:AACQ01000053
EMBL:AACQ01000052 KO:K12580 RefSeq:XP_717570.1 RefSeq:XP_717644.1
STRING:Q5A755 GeneID:3640763 GeneID:3640828 KEGG:cal:CaO19.12573
KEGG:cal:CaO19.5107 Uniprot:Q5A755
Length = 662
Score = 249 (92.7 bits), Expect = 2.9e-20, P = 2.9e-20
Identities = 58/137 (42%), Positives = 87/137 (63%)
Query: 9 QGEIDRCLKKVSEGVETFEDIWQKVHNATNS-NQKEKYEADLKKEIKKLQRLRDQIKSWI 67
Q E D+ KK+SEG++ F++I K+ NAT S +Q+EK E DLKKE+KKLQR RDQ+K W+
Sbjct: 7 QQEFDKLNKKISEGLQAFDEIKDKI-NATESASQREKLENDLKKELKKLQRSRDQLKQWL 65
Query: 68 ASAEIK-DKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQ----KEK 122
+ IK DK+ L + R IE M++FK +E+ +K K +S EGL + ++ +
Sbjct: 66 GDSSIKLDKNVLQENRTKIEHAMDQFKELEKSSKIKQFSNEGLELQSQQKRSRFGDDAKY 125
Query: 123 EEISTWLVTSIDALNIQ 139
+E T++ I+ LN Q
Sbjct: 126 QEACTYINEVIEQLNGQ 142
>UNIPROTKB|Q5A755 [details] [associations]
symbol:NOT5 "Potential mRNA deadenylase and CCR4-NOT
complex subunit Not5p" species:237561 "Candida albicans SC5314"
[GO:0009405 "pathogenesis" evidence=IMP] [GO:0016337 "cell-cell
adhesion" evidence=IMP] [GO:0030445 "yeast-form cell wall"
evidence=IDA] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0044182
"filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0071216 "cellular response to biotic stimulus"
evidence=IMP] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
CGD:CAL0002492 GO:GO:0005634 GO:GO:0030445 GO:GO:0071216
GO:GO:0036180 GO:GO:0009405 GO:GO:0006355 GO:GO:0016337
EMBL:AACQ01000053 EMBL:AACQ01000052 KO:K12580 RefSeq:XP_717570.1
RefSeq:XP_717644.1 STRING:Q5A755 GeneID:3640763 GeneID:3640828
KEGG:cal:CaO19.12573 KEGG:cal:CaO19.5107 Uniprot:Q5A755
Length = 662
Score = 249 (92.7 bits), Expect = 2.9e-20, P = 2.9e-20
Identities = 58/137 (42%), Positives = 87/137 (63%)
Query: 9 QGEIDRCLKKVSEGVETFEDIWQKVHNATNS-NQKEKYEADLKKEIKKLQRLRDQIKSWI 67
Q E D+ KK+SEG++ F++I K+ NAT S +Q+EK E DLKKE+KKLQR RDQ+K W+
Sbjct: 7 QQEFDKLNKKISEGLQAFDEIKDKI-NATESASQREKLENDLKKELKKLQRSRDQLKQWL 65
Query: 68 ASAEIK-DKSTLLDYRKLIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQ----KEK 122
+ IK DK+ L + R IE M++FK +E+ +K K +S EGL + ++ +
Sbjct: 66 GDSSIKLDKNVLQENRTKIEHAMDQFKELEKSSKIKQFSNEGLELQSQQKRSRFGDDAKY 125
Query: 123 EEISTWLVTSIDALNIQ 139
+E T++ I+ LN Q
Sbjct: 126 QEACTYINEVIEQLNGQ 142
>UNIPROTKB|H7C3F5 [details] [associations]
symbol:CNOT3 "CCR4-NOT transcription complex subunit 3"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007207 Pfam:PF04065 GO:GO:0005634
GO:GO:0006355 HGNC:HGNC:7879 EMBL:AC012314
ProteinModelPortal:H7C3F5 Ensembl:ENST00000447684 Uniprot:H7C3F5
Length = 106
Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 46/57 (80%), Positives = 50/57 (87%)
Query: 84 LIETQMERFKVVERETKTKAYSKEGLGAVQKMDPAQKEKEEISTWLVTSIDALNIQV 140
LIETQMERFKVVERETKTKAYSKEGLG QK+DPAQKEKEE+ WL +ID LN+QV
Sbjct: 2 LIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKEKEEVGQWLTNTIDTLNMQV 58
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.311 0.126 0.345 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 144 144 0.00091 102 3 11 23 0.38 32
30 0.48 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 22
No. of states in DFA: 575 (61 KB)
Total size of DFA: 136 KB (2085 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.21u 0.10s 21.31t Elapsed: 00:00:02
Total cpu time: 21.22u 0.11s 21.33t Elapsed: 00:00:02
Start: Thu Aug 15 16:45:28 2013 End: Thu Aug 15 16:45:30 2013