RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4906
         (144 letters)



>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl
          transferase subunit alpha, AccA {Escherichia coli
          [TaxId: 562]}
          Length = 316

 Score = 27.8 bits (61), Expect = 0.50
 Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 10/66 (15%)

Query: 39 SNQKEKYEADLKKEIKKLQRLRDQIKSWIAS----------AEIKDKSTLLDYRKLIETQ 88
          S Q EK + ++ +E+ +L+    ++   I +          A    +   LDY +L   +
Sbjct: 23 SRQDEKLDINIDEEVHRLREKSVELTRKIFADLGAWQIAQLARHPQRPYTLDYVRLAFDE 82

Query: 89 MERFKV 94
           +    
Sbjct: 83 FDELAG 88


>d1bgca_ a.26.1.1 (A:) Granulocyte-colony stimulating factor (G-CSF)
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 165

 Score = 27.4 bits (61), Expect = 0.52
 Identities = 6/55 (10%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 13  DRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKL-QRLRDQIKSW 66
             CL ++  G+  ++ + Q +    +       +  L+ ++      +  Q++  
Sbjct: 65  RGCLNQLHGGLFLYQGLLQAL-AGISPELAPTLDT-LQLDVTDFATNIWLQMEDL 117


>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia
          coli [TaxId: 562]}
          Length = 94

 Score = 24.9 bits (54), Expect = 2.5
 Identities = 3/23 (13%), Positives = 12/23 (52%)

Query: 47 ADLKKEIKKLQRLRDQIKSWIAS 69
           +++  I +LQ ++  ++    +
Sbjct: 49 QEVEARIAELQSMQRSLQRLNDA 71


>d1q06a_ a.6.1.3 (A:) Transcriptional regulator CueR {Escherichia
           coli [TaxId: 562]}
          Length = 127

 Score = 25.1 bits (54), Expect = 2.5
 Identities = 9/42 (21%), Positives = 23/42 (54%)

Query: 30  WQKVHNATNSNQKEKYEADLKKEIKKLQRLRDQIKSWIASAE 71
             + H+A    +  +  A++++ I++LQ +RDQ+ +   +  
Sbjct: 72  DPQRHSADVKRRTLEKVAEIERHIEELQSMRDQLLALANACP 113


>d1i1rb_ a.26.1.1 (B:) Interleukin-6 {Human herpesvirus 8, Kaposi's
           sarcoma herpes-virus [TaxId: 37296]}
          Length = 167

 Score = 25.1 bits (55), Expect = 2.7
 Identities = 9/55 (16%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 13  DRCLKKVSEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKL-QRLRDQIKSW 66
             CLKK+++G   FE +++ +            +  ++   K L   +++++   
Sbjct: 63  TSCLKKLADGFFEFEVLFKFL-TTEFGKSVINVD-VMELLTKTLGWDIQEELNKL 115


>d2fiua1 d.58.4.16 (A:1-95) Hypothetical protein Atu0297
          {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 95

 Score = 24.4 bits (53), Expect = 2.9
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 66 WIASAEIKDKSTLLDYRKLIETQMERF 92
          WIA  +++D     DY    +   ERF
Sbjct: 6  WIAQVDVRDSERYKDYVSTAKPAFERF 32


>d1g03a_ a.73.1.1 (A:) HTLV-I capsid protein {Human T-cell leukemia
           virus type 1 [TaxId: 11908]}
          Length = 134

 Score = 23.9 bits (51), Expect = 6.7
 Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 88  QMERFKVVERETKTKA-----YSKEGLGAVQKMDPAQKEKEEISTWLVTSIDA 135
           QM+  + +++E    A     + +    AVQ+ DP  K+ +++  +L +S+ A
Sbjct: 16  QMKDLQAIKQEVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQYLCSSLVA 68


>d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus
           subtilis [TaxId: 1423]}
          Length = 78

 Score = 22.8 bits (49), Expect = 8.2
 Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 8/56 (14%)

Query: 57  QRLRDQIKSWIASAEIKDKSTLLDYRKLIETQMERFKVVERETKTKAYS---KEGL 109
           Q++  +I+++I   +++    L     L    M +F+ V + T TK+     ++G 
Sbjct: 1   QQIATEIETYIEEHQLQQGDKLPVLETL----MAQFE-VSKSTITKSLELLEQKGA 51


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.126    0.345 

Gapped
Lambda     K      H
   0.267   0.0637    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 509,234
Number of extensions: 21748
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 34
Length of query: 144
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 67
Effective length of database: 1,350,386
Effective search space: 90475862
Effective search space used: 90475862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 49 (22.8 bits)