Query psy4907
Match_columns 308
No_of_seqs 173 out of 1879
Neff 9.5
Searched_HMMs 29240
Date Fri Aug 16 20:54:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4907.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4907hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 4.7E-53 1.6E-57 372.8 22.8 257 9-265 5-297 (297)
2 2lck_A Mitochondrial uncouplin 100.0 4.4E-53 1.5E-57 373.9 22.1 256 13-268 3-289 (303)
3 2lck_A Mitochondrial uncouplin 100.0 2.1E-42 7.3E-47 305.4 19.6 209 97-305 7-235 (303)
4 1okc_A ADP, ATP carrier protei 100.0 1.2E-41 4E-46 300.0 21.2 211 94-304 10-241 (297)
5 2acm_A Mucin-1; auto-catalytic 20.6 24 0.00082 21.8 0.3 20 219-238 40-59 (66)
6 2a3d_A Protein (de novo three- 12.6 2.6E+02 0.0089 16.9 3.5 41 30-75 9-49 (73)
7 2l5r_A Antimicrobial peptide a 11.6 1.7E+02 0.0057 14.1 2.3 20 136-156 3-22 (26)
8 2kdu_B MUNC13-1, protein UNC-1 11.4 83 0.0028 17.3 0.8 11 35-45 13-23 (36)
9 4b19_A PEPA1; toxin, toxin apo 7.1 2.6E+02 0.0087 14.6 1.6 20 276-295 7-26 (30)
10 1yro_A Alpha-lactalbumin; Arg2 6.4 2.7E+02 0.0091 20.0 2.1 23 220-243 87-109 (123)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=4.7e-53 Score=372.77 Aligned_cols=257 Identities=23% Similarity=0.379 Sum_probs=224.2
Q ss_pred hhhHHHHHHhhHHHHHHhhhcchhhhhhhhhhhccCCC---CCCCCCcHHHHHHHHHhhhcHhHhhccchhhhhhhcccc
Q psy4907 9 YETLVHAIAGATGSVIGVSTFYPLEIVKLRSIINDRNL---SHNDQKGILQKFEQIIKEEGLEALYQGLEPMVKSLYTSN 85 (308)
Q Consensus 9 ~~~~~~~~~g~~a~~~~~~~~~Pld~iktr~Q~~~~~~---~~~~~~~~~~~~~~i~~~~G~~gl~~G~~~~~~~~~~~~ 85 (308)
.+.+..+++|++|++++.+++||||++|+|+|++.... +...|++..+++++|+++||++|||||+.+++++..+..
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 35678999999999999999999999999999986432 234688999999999999999999999999999999999
Q ss_pred hhhHHhHHHHh----------------------hhhhhh---hhccchHHHHHHHHhhccCCC-CCCCCccHHHHHHHHH
Q psy4907 86 FVYFYSFHALK----------------------SGSVIG---VSTFYPLEIVKLRSIINDRNL-SHNDQKGILQKFEQII 139 (308)
Q Consensus 86 ~~~~~~~~~~~----------------------ag~~~~---~~~~~P~~~ik~r~q~~~~~~-~~~~~~~~~~~~~~i~ 139 (308)
.++|..||.++ +|.+++ .++++|+|++|+|+|++.... ...+|++.++++++++
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~ 164 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIF 164 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHH
Confidence 99999887654 223333 348999999999999986432 2356899999999999
Q ss_pred HHHhHHHhhhchhhHHhhhhhhhHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHhcccHHHHHHHHhhc----
Q psy4907 140 KEEGLEALYQGLEPMVKSLYTSNFVYFYSFHALKSVKGSGGESSIVTDLCLSSIAGIINVLTTTPLWVVNTRLKVS---- 215 (308)
Q Consensus 140 ~~~G~~~ly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~~~v~~Pld~ik~r~q~~---- 215 (308)
++||++|||||+.+++++.++..+++|.+||.+++.+.+.++.+....+++|++||++++++++|+|+||+|+|.+
T Consensus 165 ~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~ 244 (297)
T 1okc_A 165 KSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRK 244 (297)
T ss_dssp HHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred HhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCC
Confidence 9999999999999999999999999999999999987665556677889999999999999999999999999986
Q ss_pred ---cCcCcHHHHHHHHHHhhCcccccccccchhhhcccchhHHHHHHHHHHHh
Q psy4907 216 ---NQYSGLLHGLNKIYKEEGASALWKGTFASIILVSNPAIQMSVYELLKRYS 265 (308)
Q Consensus 216 ---~~~~~~~~~~~~i~~~eG~~~ly~G~~~~~~~~~~~~~~~~~ye~~~~~l 265 (308)
..|+++++|+++|+|+||++|||||+.|+++|.+.+++.|.+||.+|+++
T Consensus 245 ~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 245 GADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp GGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHHHHHHHHHHHHHTC----
T ss_pred CCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhhccceeeehHHHHHHhhC
Confidence 25899999999999999999999999999999777899999999998753
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=4.4e-53 Score=373.86 Aligned_cols=256 Identities=23% Similarity=0.349 Sum_probs=229.2
Q ss_pred HHHHHhhHHHHHHhhhcchhhhhhhhhhhccCCC------CCCCCCcHHHHHHHHHhhhcHhHhhccchhhhhhhcccch
Q psy4907 13 VHAIAGATGSVIGVSTFYPLEIVKLRSIINDRNL------SHNDQKGILQKFEQIIKEEGLEALYQGLEPMVKSLYTSNF 86 (308)
Q Consensus 13 ~~~~~g~~a~~~~~~~~~Pld~iktr~Q~~~~~~------~~~~~~~~~~~~~~i~~~~G~~gl~~G~~~~~~~~~~~~~ 86 (308)
..+++|++|++++.+++||||++|+|+|++.... +...|++..+++++|+++||++|||||+.+++++..+...
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 3679999999999999999999999999987542 1346889999999999999999999999999999999999
Q ss_pred hhHHhHHHHh-----------------hhhhhh---hhccchHHHHHHHHhhccCCCCCCCCccHHHHHHHHHHHHhHHH
Q psy4907 87 VYFYSFHALK-----------------SGSVIG---VSTFYPLEIVKLRSIINDRNLSHNDQKGILQKFEQIIKEEGLEA 146 (308)
Q Consensus 87 ~~~~~~~~~~-----------------ag~~~~---~~~~~P~~~ik~r~q~~~~~~~~~~~~~~~~~~~~i~~~~G~~~ 146 (308)
++|..|+.++ +|.++| .++++|+|++|+|+|++.......+|++.++++++++++||+++
T Consensus 83 i~f~~ye~~k~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~g 162 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRG 162 (303)
T ss_dssp HTTTHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhh
Confidence 9999998755 233333 34899999999999998754344578999999999999999999
Q ss_pred hhhchhhHHhhhhhhhHHHHHHHHHHHhhhcCCC--CchhHHHHHHHHHHHHHHHHhcccHHHHHHHHhhc--cCcCcHH
Q psy4907 147 LYQGLEPMVKSLYTSNFVYFYSFHALKSVKGSGG--ESSIVTDLCLSSIAGIINVLTTTPLWVVNTRLKVS--NQYSGLL 222 (308)
Q Consensus 147 ly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ag~~~~~v~~Pld~ik~r~q~~--~~~~~~~ 222 (308)
||||+.+++++.++..+++|.+||.+|+.+.+.. +.+....+++|++||++++++++|+|+||+|+|.+ ..|++++
T Consensus 163 lyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~~y~~~~ 242 (303)
T 2lck_A 163 LWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAG 242 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCSHH
T ss_pred hhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccccccCCHH
Confidence 9999999999999999999999999999887643 45677889999999999999999999999999997 4699999
Q ss_pred HHHHHHHHhhCcccccccccchhhh-cccchhHHHHHHHHHHHhhhc
Q psy4907 223 HGLNKIYKEEGASALWKGTFASIIL-VSNPAIQMSVYELLKRYSVDI 268 (308)
Q Consensus 223 ~~~~~i~~~eG~~~ly~G~~~~~~~-~~~~~~~~~~ye~~~~~l~~~ 268 (308)
+|+++|+++||++|||||+.|+++| +|..+++|.+||.+|+.+.+.
T Consensus 243 ~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~~ 289 (303)
T 2lck_A 243 HCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAA 289 (303)
T ss_dssp HHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998 689999999999999887654
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2.1e-42 Score=305.41 Aligned_cols=209 Identities=22% Similarity=0.337 Sum_probs=187.4
Q ss_pred hhhhhh---hhccchHHHHHHHHhhccCCCC------CCCCccHHHHHHHHHHHHhHHHhhhchhhHHhhhhhhhHHHHH
Q psy4907 97 SGSVIG---VSTFYPLEIVKLRSIINDRNLS------HNDQKGILQKFEQIIKEEGLEALYQGLEPMVKSLYTSNFVYFY 167 (308)
Q Consensus 97 ag~~~~---~~~~~P~~~ik~r~q~~~~~~~------~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~~~~ 167 (308)
+|++++ .++++|+|++|+|+|++..... ..+|++.++++++++++||+++||||+.+++++.++..+++|.
T Consensus 7 aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~ 86 (303)
T 2lck_A 7 GAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIG 86 (303)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 444444 4589999999999999875321 3468999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCC-CCchhHHHHHHHHHHHHHHHHhcccHHHHHHHHhhcc------CcCcHHHHHHHHHHhhCccccccc
Q psy4907 168 SFHALKSVKGSG-GESSIVTDLCLSSIAGIINVLTTTPLWVVNTRLKVSN------QYSGLLHGLNKIYKEEGASALWKG 240 (308)
Q Consensus 168 ~~~~~~~~~~~~-~~~~~~~~~~~~~~ag~~~~~v~~Pld~ik~r~q~~~------~~~~~~~~~~~i~~~eG~~~ly~G 240 (308)
+||.+++.+.+. ++.+....+++|++||+++.++++|+|+||+|+|++. .|.+.++++++|+++||++|||||
T Consensus 87 ~ye~~k~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG 166 (303)
T 2lck_A 87 LYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKG 166 (303)
T ss_dssp HHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCC
Confidence 999999988765 3466788999999999999999999999999999973 689999999999999999999999
Q ss_pred ccchhhh-cccchhHHHHHHHHHHHhhhc---CCChHHHHHHHHHHHHHHHHhhchHHHHHHHHhcccc
Q psy4907 241 TFASIIL-VSNPAIQMSVYELLKRYSVDI---KDSSLKFFVLAAMSKIVSTLVTYPVQIAQNVQRWTRL 305 (308)
Q Consensus 241 ~~~~~~~-~~~~~~~~~~ye~~~~~l~~~---~~~~~~~~~~~~~a~~~~~~~~~P~dvv~~~~q~~~~ 305 (308)
+.|++++ ++..+++|.+||.+|+.+.+. ..+....+++|++||++++++++|+||||+|||++..
T Consensus 167 ~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~ 235 (303)
T 2lck_A 167 TSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL 235 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc
Confidence 9999998 689999999999999998765 4567789999999999999999999999999999753
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.2e-41 Score=299.97 Aligned_cols=211 Identities=22% Similarity=0.312 Sum_probs=184.1
Q ss_pred HHhhhhhhhh---hccchHHHHHHHHhhccCCC---CCCCCccHHHHHHHHHHHHhHHHhhhchhhHHhhhhhhhHHHHH
Q psy4907 94 ALKSGSVIGV---STFYPLEIVKLRSIINDRNL---SHNDQKGILQKFEQIIKEEGLEALYQGLEPMVKSLYTSNFVYFY 167 (308)
Q Consensus 94 ~~~ag~~~~~---~~~~P~~~ik~r~q~~~~~~---~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~~~~ 167 (308)
.+.+|+++|+ ++++|+|++|+|+|++.... ...+|++.++++++++++||+++||||+.++++++++..+++|.
T Consensus 10 ~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~ 89 (297)
T 1okc_A 10 DFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFA 89 (297)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHHHHHH
Confidence 3445555554 48999999999999986421 23468999999999999999999999999999999999999999
Q ss_pred HHHHHHhhh-cCCCC-----chhHHHHHHHHHHHHHHHHhcccHHHHHHHHhhc-------cCcCcHHHHHHHHHHhhCc
Q psy4907 168 SFHALKSVK-GSGGE-----SSIVTDLCLSSIAGIINVLTTTPLWVVNTRLKVS-------NQYSGLLHGLNKIYKEEGA 234 (308)
Q Consensus 168 ~~~~~~~~~-~~~~~-----~~~~~~~~~~~~ag~~~~~v~~Pld~ik~r~q~~-------~~~~~~~~~~~~i~~~eG~ 234 (308)
+||.+++.+ ...+. ......+++|++||+++.++++|+|+||+|+|++ ..|.+.++++++|+++||+
T Consensus 90 ~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~ 169 (297)
T 1okc_A 90 FKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGL 169 (297)
T ss_dssp HHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccH
Confidence 999999954 32221 1346788999999999999999999999999987 2588999999999999999
Q ss_pred ccccccccchhhh-cccchhHHHHHHHHHHHhhhc-CCChHHHHHHHHHHHHHHHHhhchHHHHHHHHhccc
Q psy4907 235 SALWKGTFASIIL-VSNPAIQMSVYELLKRYSVDI-KDSSLKFFVLAAMSKIVSTLVTYPVQIAQNVQRWTR 304 (308)
Q Consensus 235 ~~ly~G~~~~~~~-~~~~~~~~~~ye~~~~~l~~~-~~~~~~~~~~~~~a~~~~~~~~~P~dvv~~~~q~~~ 304 (308)
+|||||+.+++++ ++..+++|.+||.+|+.+.+. +.+....+++|.++|++++++++|+||||+|||++.
T Consensus 170 ~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~ 241 (297)
T 1okc_A 170 RGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQS 241 (297)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcC
Confidence 9999999999998 689999999999999988765 557788899999999999999999999999999875
No 5
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=20.64 E-value=24 Score=21.83 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=16.8
Q ss_pred CcHHHHHHHHHHhhCccccc
Q psy4907 219 SGLLHGLNKIYKEEGASALW 238 (308)
Q Consensus 219 ~~~~~~~~~i~~~eG~~~ly 238 (308)
+++.+.+.+||+++++.||+
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 46778899999999998876
No 6
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=12.61 E-value=2.6e+02 Score=16.90 Aligned_cols=41 Identities=17% Similarity=0.075 Sum_probs=24.8
Q ss_pred chhhhhhhhhhhccCCCCCCCCCcHHHHHHHHHhhhcHhHhhccch
Q psy4907 30 YPLEIVKLRSIINDRNLSHNDQKGILQKFEQIIKEEGLEALYQGLE 75 (308)
Q Consensus 30 ~Pld~iktr~Q~~~~~~~~~~~~~~~~~~~~i~~~~G~~gl~~G~~ 75 (308)
+-|.-||||+|.-.+. -......-++|..-|.=..-|+|-+
T Consensus 9 qrlaaiktrlqalggs-----eaelaafekeiaafeselqaykgkg 49 (73)
T 2a3d_A 9 QRLAAIKTRLQALGGS-----EAELAAFEKEIAAFESELQAYKGKG 49 (73)
T ss_dssp HHHHHHHHHHHHCSSG-----GGTHHHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHHhcCc-----HHHHHHHHHHHHHHHHHHHHhccCC
Confidence 4567899999986544 1234444455655555555666654
No 7
>2l5r_A Antimicrobial peptide alyteserin-1C; alpha helix, antimicrobial protein; NMR {Alytes obstetricans}
Probab=11.62 E-value=1.7e+02 Score=14.12 Aligned_cols=20 Identities=35% Similarity=0.630 Sum_probs=12.9
Q ss_pred HHHHHHHhHHHhhhchhhHHh
Q psy4907 136 EQIIKEEGLEALYQGLEPMVK 156 (308)
Q Consensus 136 ~~i~~~~G~~~ly~G~~~~~~ 156 (308)
++|++ .|+.+|-+|..+.+.
T Consensus 3 keifk-aglgslvkgiaahva 22 (26)
T 2l5r_A 3 KEIFK-AGLGSLVKGIAAHVA 22 (26)
T ss_dssp HHHHH-HHHHHHHHHHHHHHC
T ss_pred HHHHH-HhHHHHHHHHHHHHh
Confidence 33443 478888888877654
No 8
>2kdu_B MUNC13-1, protein UNC-13 homolog A; calmodulin, calcium, acetylation, methylation, alternative splicing, cell junction, cell membrane, coiled coil; NMR {Xenopus laevis}
Probab=11.35 E-value=83 Score=17.32 Aligned_cols=11 Identities=18% Similarity=0.308 Sum_probs=7.4
Q ss_pred hhhhhhhccCC
Q psy4907 35 VKLRSIINDRN 45 (308)
Q Consensus 35 iktr~Q~~~~~ 45 (308)
-|+|+|++...
T Consensus 13 nKVR~qlqe~~ 23 (36)
T 2kdu_B 13 NKVRMQLQEAR 23 (36)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHccc
Confidence 47788887544
No 9
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=7.10 E-value=2.6e+02 Score=14.63 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHhhchHHH
Q psy4907 276 FVLAAMSKIVSTLVTYPVQI 295 (308)
Q Consensus 276 ~~~~~~a~~~~~~~~~P~dv 295 (308)
+++-.++|++.++.+|.++-
T Consensus 7 iia~visGcivalF~hWL~~ 26 (30)
T 4b19_A 7 IIAPVISGCAIAFFSYWLSR 26 (30)
T ss_dssp STTTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 34456777888888887763
No 10
>1yro_A Alpha-lactalbumin; Arg228Lys mutation, UDP-GAL complex, transferase activator/transferase complex; HET: GDU UDP MES PG4; 1.90A {Mus musculus} SCOP: d.2.1.2 PDB: 1nhe_A* 1nkh_A* 1nmm_A* 1nqi_A* 1nwg_A* 1o23_A* 1oqm_A* 1pzy_A* 1nf5_A* 2fyc_A* 2fyd_A*
Probab=6.43 E-value=2.7e+02 Score=20.02 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=16.9
Q ss_pred cHHHHHHHHHHhhCcccccccccc
Q psy4907 220 GLLHGLNKIYKEEGASALWKGTFA 243 (308)
Q Consensus 220 ~~~~~~~~i~~~eG~~~ly~G~~~ 243 (308)
.-..|+++|++++|+.+ |.+|..
T Consensus 87 ~~i~CAk~I~~~~G~~a-W~~w~~ 109 (123)
T 1yro_A 87 DDIACAKKILAIKGIDY-WKAYKP 109 (123)
T ss_dssp HHHHHHHHHHHHTCGGG-STTHHH
T ss_pred HHHHHHHHHHHhcCcch-hHHHHh
Confidence 34789999999999764 555543
Done!