RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4907
(308 letters)
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane protein,
transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 139 bits (352), Expect = 2e-39
Identities = 59/293 (20%), Positives = 111/293 (37%), Gaps = 36/293 (12%)
Query: 8 TYETLVHAIAGATGSVIGVSTFYPLEIVKLRSIINDRNLSHNDQ---KGILQKFEQIIKE 64
L +AG + I + P+E VKL + + + + KGI+ +I KE
Sbjct: 4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKE 63
Query: 65 EGLEALYQGLEPMV-----------------KSLYTSNF-----VYFYSFHALKSGSVIG 102
+G + ++G V K ++ + Y L SG G
Sbjct: 64 QGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAG 123
Query: 103 VST---FYPLEIVKLRSIINDRNLSHNDQ-KGILQKFEQIIKEEGLEALYQGLEPMVKSL 158
++ YPL+ + R + + + G+ +I K +GL LYQG V+ +
Sbjct: 124 ATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGI 183
Query: 159 YTSNFVYFYSFHALKSVKGSGGESSIVTDLCLSSIAGIINVLTTTPLWVVNTRL------ 212
YF + K + I+ ++ + L + P V R+
Sbjct: 184 IIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGR 243
Query: 213 -KVSNQYSGLLHGLNKIYKEEGASALWKGTFASIILVSNPAIQMSVYELLKRY 264
Y+G + KI K+EG A +KG +++++ A + +Y+ +K++
Sbjct: 244 KGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVLYDEIKKF 296
Score = 105 bits (263), Expect = 1e-26
Identities = 50/232 (21%), Positives = 93/232 (40%), Gaps = 28/232 (12%)
Query: 97 SGSVIGV---STFYPLEIVKLRSIINDRNLSHNDQ---KGILQKFEQIIKEEGLEALYQG 150
+G V + P+E VKL + + + + KGI+ +I KE+G + ++G
Sbjct: 13 AGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRG 72
Query: 151 LEPMVKSLYTSNFVYFYSFHALKSV------KGSGGESSIVTDLCLSSIAGIINVLTTTP 204
V + + + F K + + +L AG ++ P
Sbjct: 73 NLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYP 132
Query: 205 LWVVNTRL-------KVSNQYSGLLHGLNKIYKEEGASALWKGTFASI--ILVSNPAIQM 255
L TRL +++GL + + KI+K +G L++G S+ I++ A
Sbjct: 133 LDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYR-AAYF 191
Query: 256 SVYELLKRYSVDIKDSS-LKFFVLAAMSKIVSTLVTYPVQIAQNVQRWTRLQ 306
VY+ K D K+ + +++A V+ LV+YP + R R+
Sbjct: 192 GVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPF----DTVR-RRMM 238
Score = 71.5 bits (176), Expect = 2e-14
Identities = 32/146 (21%), Positives = 56/146 (38%), Gaps = 22/146 (15%)
Query: 178 SGGESSIVTDLCLSSIAGIINVLTTTPLWVVNTRLKVSN---------QYSGLLHGLNKI 228
S S + D +A I+ P+ V L+V + QY G++ + +I
Sbjct: 1 SDQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRI 60
Query: 229 YKEEGASALWKGTFASII-LVSNPAIQMSVYELLKRY---SVDIKDSSLKFFVLA----A 280
KE+G + W+G A++I A+ + + K+ VD ++F
Sbjct: 61 PKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGG 120
Query: 281 MSKIVSTLVTYPVQIAQNVQRWTRLQ 306
+ S YP+ A+ TRL
Sbjct: 121 AAGATSLCFVYPLDFAR-----TRLA 141
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 129 bits (326), Expect = 1e-35
Identities = 58/288 (20%), Positives = 106/288 (36%), Gaps = 41/288 (14%)
Query: 13 VHAIAGATGSVIGVSTFYPLEIVKLR------SIINDRNLSHNDQKGILQKFEQIIKEEG 66
V + T + I +PL+ K+R S R + +G+L +++ EG
Sbjct: 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEG 62
Query: 67 LEALYQGLEPMVKSLYTSNFVYFYSFHALKS------------------------GSVIG 102
+LY GL ++ + V + ++K +
Sbjct: 63 PRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVA 122
Query: 103 VSTFYPLEIVKLRSIINDRNLSHNDQ-KGILQKFEQIIKEEGLEALYQGLEPMVKSLYTS 161
P ++VK+R + + ++ ++ I +EEG+ L++G P V
Sbjct: 123 Q----PTDVVKVR-FQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIV 177
Query: 162 NFVYFYSFHALKS--VKGSGGESSIVTDLCLSSIAGIINVLTTTPLWVVNTRLKVS--NQ 217
N ++ +K +K + + + AG + +P+ VV TR S Q
Sbjct: 178 NCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQ 237
Query: 218 YSGLLHGLNKIYKEEGASALWKGTFASII-LVSNPAIQMSVYELLKRY 264
Y H + ++EG A +KG S + L S + YE LKR
Sbjct: 238 YHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRA 285
Score = 115 bits (289), Expect = 3e-30
Identities = 48/230 (20%), Positives = 88/230 (38%), Gaps = 26/230 (11%)
Query: 97 SGSVIGVSTFYPLEIVKLR------SIINDRNLSHNDQKGILQKFEQIIKEEGLEALYQG 150
+ + I +PL+ K+R S R + +G+L +++ EG +LY G
Sbjct: 10 TAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNG 69
Query: 151 LEPMVKSLYTSNFVYFYSFHALKS-VKGSGGESSIVTDLCLSSIAGIINVLTTTPLWVVN 209
L ++ + V + ++K + I + L S G + V P VV
Sbjct: 70 LVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVK 129
Query: 210 TRL----KVSNQ--YSGLLHGLNKIYKEEGASALWKGTFASI---ILVSNPAIQMSVYEL 260
R + Y + I +EEG LWKGT ++ +V+ ++ Y+L
Sbjct: 130 VRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVN--CAELVTYDL 187
Query: 261 LKRY---SVDIKDSSLKFFVLAAMSKIVSTLVTYPVQIAQNVQRWTRLQK 307
+K + + D F A + +T++ PV + + TR
Sbjct: 188 IKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVK-----TRYMN 232
Score = 58.9 bits (143), Expect = 4e-10
Identities = 28/138 (20%), Positives = 56/138 (40%), Gaps = 20/138 (14%)
Query: 184 IVTDLCLSSIAGIINVLTTTPLWVVNTRL------------KVSNQYSGLLHGLNKIYKE 231
+ + A I L T PL RL S QY G+L + + +
Sbjct: 1 MTVKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRT 60
Query: 232 EGASALWKGTFASII-LVSNPAIQMSVYELLKR-YSVDIKDSSLKFFVLAAM-SKIVSTL 288
EG +L+ G A + +S ++++ +Y+ +K+ Y+ + + + +LA + ++
Sbjct: 61 EGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVA 120
Query: 289 VTYPVQIAQNVQRWTRLQ 306
V P + + R Q
Sbjct: 121 VAQPTDVVK-----VRFQ 133
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.8 bits (95), Expect = 6e-04
Identities = 64/426 (15%), Positives = 127/426 (29%), Gaps = 160/426 (37%)
Query: 13 VHAIA-----------GATGSVIGVSTFYPLEIVKLRSIINDRN--LSHNDQKG---ILQ 56
+HA+A T +I + I+ R N L +G ++
Sbjct: 101 IHALAAKLLQENDTTLVKTKELI--KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA 158
Query: 57 KF------EQIIKEEGLEALYQGLEPMVKSL---------------YTSNFVYFYSFHAL 95
F + +E L LYQ +V L + V+ + L
Sbjct: 159 IFGGQGNTDDYFEE--LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL 216
Query: 96 K-------------------SGSVIGVSTF--YPLEIVKLRSI-INDRNLSHNDQ----- 128
+ S +IGV Y +V + + L +
Sbjct: 217 EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHY---VVTAKLLGFTPGELRSYLKGATGH 273
Query: 129 -KGIL-----------QKFEQIIKEEGLEAL-YQGLEPMVKSLYTSNFVYFYSFHAL--- 172
+G++ + F ++ + + L + G+ Y +L
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVR-KAITVLFFIGVR----CYEA------YPNTSLPPS 322
Query: 173 ---KSVKGSGGESS---IVTDLCLSSIAGIINVL-TTTP------LWVVNTRLKVSNQY- 218
S++ + G S +++L + +N + P + +VN
Sbjct: 323 ILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA----KNLV 378
Query: 219 -SGL---LHGLNKIYKEEGASALW----------KGTFASIIL-VSNP--------AIQM 255
SG L+GLN ++ A + K F++ L V++P A +
Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDL 438
Query: 256 SVYELLKRYSVDIKDSSLKFFV--------LAAMS-----KIVSTLVTYPVQIAQNVQRW 302
+ + L + +V ++ V L +S +IV ++ PV +W
Sbjct: 439 -INKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPV-------KW 490
Query: 303 TRLQKC 308
+
Sbjct: 491 ETTTQF 496
Score = 33.1 bits (75), Expect = 0.15
Identities = 33/177 (18%), Positives = 67/177 (37%), Gaps = 49/177 (27%)
Query: 148 YQGLEPMVKSLYTSNFVYFYSFH-ALKSVKGSGGESSIVTDLCLSSIAGIINVLTTTP-- 204
QG M LY ++ ++ A K + G S I++++ P
Sbjct: 1628 EQG---MGMDLYKTSKAAQDVWNRADNHFKDTYGFS-------------ILDIVINNPVN 1671
Query: 205 LWVVNTRLK---VSNQYSGLLH--------GLNKIYKE--EGASAL-WKGTFASIILVSN 250
L + K + YS ++ KI+KE E +++ ++ +
Sbjct: 1672 LTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF 1731
Query: 251 --PAI---QMSVYELLKRYSVDIKDS-----SL-KFFVLAAMSKIVST-----LVTY 291
PA+ + + +E LK + D+ SL ++ LA+++ ++S +V Y
Sbjct: 1732 TQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFY 1788
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.009
Identities = 52/363 (14%), Positives = 106/363 (29%), Gaps = 113/363 (31%)
Query: 37 LRSIINDRNLSH-----NDQKG-------ILQKFEQIIK---EEGLEALYQGL------E 75
+SI++ + H + G +L K E++++ EE L Y+ L E
Sbjct: 42 PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE 101
Query: 76 PMVKSLYTSNFVYFYSFHALKSGSVIGVSTFYPLEIVKLRSIINDRN----LSHND---- 127
S+ T ++ L + F + +L+ + R L
Sbjct: 102 QRQPSMMTRMYIEQRD--RLYND----NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 128 -----------------QKGILQKF---------------EQIIKEEGLEALYQGLEPMV 155
+ K E ++ E L+ L ++P
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL--EMLQKLLYQIDPNW 213
Query: 156 KSLYTSNFVYFYSFHALKS-----VKGSGGESS--IVTDLCLSSIAGIINV-----LTTT 203
S + H++++ +K E+ ++ ++ + N+ LTT
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273
Query: 204 PLWVVNTRLKVSNQYSGLLHGLNKIYKEEGASALWKGTFASIILVS-----------NP- 251
V + + + L H + +E K + NP
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEV-----KSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 252 AIQM---------SVYELLKRYSVD----IKDSSLKFFVLAAMSKIVSTLVTYP--VQIA 296
+ + + ++ K + D I +SSL A K+ L +P I
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
Query: 297 QNV 299
+
Sbjct: 389 TIL 391
Score = 29.8 bits (66), Expect = 1.4
Identities = 28/165 (16%), Positives = 54/165 (32%), Gaps = 41/165 (24%)
Query: 25 GVSTFYPLEIVKLRSIINDRNLSHN---DQKGILQKFEQIIKEEGLEALYQGLEPMVKSL 81
+ + + + N+ L H D I + F+ L P
Sbjct: 424 STISIPSIYLELKVKLENEYAL-HRSIVDHYNIPKTFDS-----------DDLIP----P 467
Query: 82 YTSNFVYFYSF---HALKSGSVIGVSTFYPLEIVKLRSI---INDRNLSHNDQKGI---- 131
Y YFYS H LK+ T + + + R + I + + N I
Sbjct: 468 YLDQ--YFYSHIGHH-LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524
Query: 132 --LQKFEQIIKEEGLEALYQGLEPMVKSLYTSNFVYFYSFHALKS 174
L+ ++ I + + Y E +V ++ +F+ + + S
Sbjct: 525 QQLKFYKPYICDN--DPKY---ERLVNAI--LDFLPKIEENLICS 562
>3au8_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH binding;
HET: NDP; 1.86A {Plasmodium falciparum} PDB: 3au9_A*
3aua_A*
Length = 488
Score = 30.3 bits (69), Expect = 0.73
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 15 AIAGATGSVIGVSTFYPLEIVKLRSIINDR 44
AI G+TGS IG + L I++ + I +
Sbjct: 81 AIFGSTGS-IGTNA---LNIIRECNKIENV 106
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 1.2
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 14/31 (45%)
Query: 227 KIYKEEGASALWKGTFASIILVSNPAIQMSV 257
K+Y ++ A AL AI+ ++
Sbjct: 30 KLYADDSAPAL--------------AIKATM 46
>2ool_A Sensor protein; bacteriophytochrome, photoconversion,
photoreceptor, biliver signaling protein; HET: LBV;
2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1
d.110.3.9
Length = 337
Score = 29.2 bits (65), Expect = 1.8
Identities = 9/60 (15%), Positives = 21/60 (35%)
Query: 42 NDRNLSHNDQKGILQKFEQIIKEEGLEALYQGLEPMVKSLYTSNFVYFYSFHALKSGSVI 101
++ ++ + + ++ L V+ + + + Y F A SG VI
Sbjct: 137 DESRYTNEFFRSVRVAIRRLQTAADLPTACWIAASEVRRITGFDRIKVYQFAADWSGQVI 196
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain,
receptor, PAS domain, chromophore, sensory transduction;
HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Length = 520
Score = 28.9 bits (64), Expect = 2.2
Identities = 10/59 (16%), Positives = 18/59 (30%)
Query: 43 DRNLSHNDQKGILQKFEQIIKEEGLEALYQGLEPMVKSLYTSNFVYFYSFHALKSGSVI 101
D ++ ++ L Y + V+ + + V Y F G VI
Sbjct: 129 DNLPFLGFYHMANAALNRLRQQANLRDFYDVIVEEVRRMTGFDRVMLYRFDENNHGDVI 187
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation,
ATP-binding, cytoplasm, mitochondrion,
nucleotide-binding, nucleus; 2.95A {Saccharomyces
cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Length = 409
Score = 28.8 bits (65), Expect = 2.6
Identities = 10/60 (16%), Positives = 25/60 (41%), Gaps = 13/60 (21%)
Query: 16 IAGATGSVIGVSTFYPLEIVKLRSIINDRNLSHNDQKGILQKFEQIIKEEGLEALYQGLE 75
+ G T +Y L+++ N R + + ++ + +K I++ + +Y L
Sbjct: 96 VVGGTH-------YY------LQTLFNKRVDTKSSERKLTRKQLDILESTDPDVIYNTLV 142
Score = 28.4 bits (64), Expect = 3.5
Identities = 7/39 (17%), Positives = 20/39 (51%)
Query: 114 LRSIINDRNLSHNDQKGILQKFEQIIKEEGLEALYQGLE 152
L+++ N R + + ++ + +K I++ + +Y L
Sbjct: 104 LQTLFNKRVDTKSSERKLTRKQLDILESTDPDVIYNTLV 142
>1q0q_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase;
HET: DXP NDP; 1.90A {Escherichia coli} SCOP: a.69.3.1
c.2.1.3 d.81.1.3 PDB: 1q0l_A* 1q0h_A* 3r0i_A* 1k5h_A
1onn_A 1ono_A 1onp_A* 1jvs_A* 1t1r_A* 1t1s_A* 2egh_A*
3anm_A* 3anl_A* 3ann_A* 3iie_A
Length = 406
Score = 28.3 bits (64), Expect = 3.6
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 4/22 (18%)
Query: 15 AIAGATGSVIGVSTFYPLEIVK 36
I G+TGS IG ST L++V+
Sbjct: 13 TILGSTGS-IGCST---LDVVR 30
>1k1x_A 4-alpha-glucanotransferase; 2.40A {Thermococcus litoralis} SCOP:
a.8.3.2 b.30.5.8 c.6.2.2 PDB: 1k1w_A 1k1y_A*
Length = 659
Score = 28.4 bits (63), Expect = 3.6
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 212 LKVSNQYSGLLHGLNKIYKEEGASALWKGTFASIILVSNPAIQMSVYELL 261
L VS I K + A W G F I P ++ +V+E +
Sbjct: 331 LMVSKAVRDNPEARKYILKAQCNDAYWHGVFGGI---YLPHLRRTVWENI 377
>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent,
fosmidomycin, non- mevalonate pathway, oxidoreductase;
1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3
d.81.1.3 PDB: 1r0l_A*
Length = 388
Score = 27.8 bits (63), Expect = 5.0
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 4/22 (18%)
Query: 15 AIAGATGSVIGVSTFYPLEIVK 36
+ GATGS IG ST L++++
Sbjct: 8 TVLGATGS-IGHST---LDLIE 25
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine
kinase), PHYB1; bacteriophytochrome chromophore binding
domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Length = 327
Score = 27.2 bits (60), Expect = 7.8
Identities = 13/68 (19%), Positives = 24/68 (35%)
Query: 34 IVKLRSIINDRNLSHNDQKGILQKFEQIIKEEGLEALYQGLEPMVKSLYTSNFVYFYSFH 93
++L D + + ++ E LE+ V+ + + V Y F
Sbjct: 116 FLELEPPQRDVRYPQAFFRSVRSAIRRLQAAETLESACAAAAQEVREITGFDRVMIYRFA 175
Query: 94 ALKSGSVI 101
+ SG VI
Sbjct: 176 SDFSGEVI 183
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.381
Gapped
Lambda K H
0.267 0.0574 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,416,782
Number of extensions: 254153
Number of successful extensions: 711
Number of sequences better than 10.0: 1
Number of HSP's gapped: 677
Number of HSP's successfully gapped: 23
Length of query: 308
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 215
Effective length of database: 4,105,140
Effective search space: 882605100
Effective search space used: 882605100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.1 bits)