RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4907
         (308 letters)



>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
           heart isoform t1 [TaxId: 9913]}
          Length = 292

 Score = 89.8 bits (221), Expect = 2e-21
 Identities = 54/284 (19%), Positives = 104/284 (36%), Gaps = 36/284 (12%)

Query: 12  LVHAIAGATGSVIGVSTFYPLEIVKLR---SIINDRNLSHNDQKGILQKFEQIIKEEGLE 68
           L   +AG   + I  +   P+E VKL       + +  +    KGI+    +I KE+G  
Sbjct: 7   LKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFL 66

Query: 69  ALYQGLEPMVKSLYTSNFVYFYSFHALKS-------------------------GSVIGV 103
           + ++G    V   + +  + F      K                               +
Sbjct: 67  SFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSL 126

Query: 104 STFYPLEIVKLRSIIN-DRNLSHNDQKGILQKFEQIIKEEGLEALYQGLEPMVKSLYTSN 162
              YPL+  + R   +  +  +  +  G+     +I K +GL  LYQG    V+ +    
Sbjct: 127 CFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYR 186

Query: 163 FVYFYSFHALKSVKGSGGESSIVTDLCLSSIAGIINVLTTTPLWVVNTRLKVSN------ 216
             YF  +   K +        I+    ++     +  L + P   V  R+ + +      
Sbjct: 187 AAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGAD 246

Query: 217 -QYSGLLHGLNKIYKEEGASALWKGTFASIILVSNPAIQMSVYE 259
             Y+G +    KI K+EG  A +KG +++++     A  + +Y+
Sbjct: 247 IMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVLYD 290



 Score = 44.7 bits (104), Expect = 7e-06
 Identities = 34/168 (20%), Positives = 64/168 (38%), Gaps = 16/168 (9%)

Query: 88  YFYSFHALKSGSVIGVSTFYPLEIVKLR---SIINDRNLSHNDQKGILQKFEQIIKEEGL 144
           +   F A    + I  +   P+E VKL       + +  +    KGI+    +I KE+G 
Sbjct: 6   FLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGF 65

Query: 145 EALYQGLEPMVKSLYTSNFVYFYSFHALKSV------KGSGGESSIVTDLCLSSIAGIIN 198
            + ++G    V   + +  + F      K +      +          +L     AG  +
Sbjct: 66  LSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATS 125

Query: 199 VLTTTPLWVVNTRLKVS-------NQYSGLLHGLNKIYKEEGASALWK 239
           +    PL    TRL           +++GL + + KI+K +G   L++
Sbjct: 126 LCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQ 173



 Score = 41.2 bits (95), Expect = 7e-05
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 183 SIVTDLCLSSIAGIINVLTTTPLWVVNTRLKVSN---------QYSGLLHGLNKIYKEEG 233
           S + D     +A  I+     P+  V   L+V +         QY G++  + +I KE+G
Sbjct: 5   SFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQG 64

Query: 234 ASALW 238
             + W
Sbjct: 65  FLSFW 69


>d1k1xa1 a.8.3.2 (A:311-384) 4-alpha-glucanotransferase, domain 2
           {Archaeon Thermococcus litoralis [TaxId: 2265]}
          Length = 74

 Score = 25.1 bits (55), Expect = 3.8
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 212 LKVSNQYSGLLHGLNKIYKEEGASALWKGTFASIILVSNPAIQMSVYELL 261
           L VS            I K +   A W G F  I L   P ++ +V+E +
Sbjct: 21  LMVSKAVRDNPEARKYILKAQCNDAYWHGVFGGIYL---PHLRRTVWENI 67


>d1t0fa2 c.52.1.16 (A:7-168) TnsA endonuclease, N-terminal domain
           {Escherichia coli [TaxId: 562]}
          Length = 162

 Score = 25.2 bits (55), Expect = 8.6
 Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 86  FVYFYSFHALKSGSVIGVSTFYPLEIVKLRSIINDRNLSHNDQKGILQ 133
              F S       SV+ +   +PL     R I  D  + H   +G+ Q
Sbjct: 58  LAVFLSLEW--ESSVLDIREQFPLLPSDTRQIAIDSGIKHPVIRGVDQ 103


>d1q0qa2 c.2.1.3 (A:1-125,A:275-300)
          1-deoxy-D-xylulose-5-phosphate reductoisomerase
          {Escherichia coli [TaxId: 562]}
          Length = 151

 Score = 25.1 bits (54), Expect = 8.9
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 4/22 (18%)

Query: 15 AIAGATGSVIGVSTFYPLEIVK 36
           I G+TGS IG ST   L++V+
Sbjct: 5  TILGSTGS-IGCST---LDVVR 22


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.381 

Gapped
Lambda     K      H
   0.267   0.0643    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,052,444
Number of extensions: 46812
Number of successful extensions: 121
Number of sequences better than 10.0: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 12
Length of query: 308
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 223
Effective length of database: 1,240,546
Effective search space: 276641758
Effective search space used: 276641758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.4 bits)