BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4909
(361 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O75175|CNOT3_HUMAN CCR4-NOT transcription complex subunit 3 OS=Homo sapiens GN=CNOT3
PE=1 SV=1
Length = 753
Score = 273 bits (699), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 120/164 (73%), Positives = 139/164 (84%)
Query: 197 SEAHIPYMLGVVPLGPQPLHKAHHYQYQLVDQAYHHLPTPADSERLRHYITRTPCTTPSY 256
SE +IP LGV PLGP PL K YQ + + A+HH+P P+DSER+R Y+ R PC TP Y
Sbjct: 589 SEVNIPLSLGVCPLGPVPLTKEQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPY 648
Query: 257 YPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTKAQYLAAKALKKQSWRFHTKYMMWFQR 316
+ Q+P PHSDT++F+QRLSTE+LFFIFYY+EGTKAQYLAAKALKKQSWRFHTKYMMWFQR
Sbjct: 649 HHQMPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQR 708
Query: 317 HEEPKLINEDYEQGTYIYFDNEKWSQRKKEGFTFEYKYLEDRDL 360
HEEPK I +++EQGTYIYFD EKW QRKKEGFTFEY+YLEDRDL
Sbjct: 709 HEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDL 752
>sp|Q8K0V4|CNOT3_MOUSE CCR4-NOT transcription complex subunit 3 OS=Mus musculus GN=Cnot3
PE=1 SV=1
Length = 751
Score = 271 bits (692), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 119/164 (72%), Positives = 138/164 (84%)
Query: 197 SEAHIPYMLGVVPLGPQPLHKAHHYQYQLVDQAYHHLPTPADSERLRHYITRTPCTTPSY 256
SE +IP LGV PLGP L K YQ + + A+HH+P P+DSER+R Y+ R PC TP Y
Sbjct: 587 SEVNIPLSLGVCPLGPVSLTKEQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPY 646
Query: 257 YPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTKAQYLAAKALKKQSWRFHTKYMMWFQR 316
+ Q+P PHSDT++F+QRLSTE+LFFIFYY+EGTKAQYLAAKALKKQSWRFHTKYMMWFQR
Sbjct: 647 HHQMPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQR 706
Query: 317 HEEPKLINEDYEQGTYIYFDNEKWSQRKKEGFTFEYKYLEDRDL 360
HEEPK I +++EQGTYIYFD EKW QRKKEGFTFEY+YLEDRDL
Sbjct: 707 HEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDL 750
>sp|O13870|NOT3_SCHPO General negative regulator of transcription subunit 3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=not3 PE=1 SV=2
Length = 640
Score = 145 bits (366), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 65/129 (50%), Positives = 88/129 (68%), Gaps = 1/129 (0%)
Query: 232 HLPTPADSERLRHYITRTPCTTPSYYPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTKA 291
++P D+ + ++YI + P P YYPQ PLP D+ + + + ++LF++FYY GT
Sbjct: 508 YVPDATDAAKPQYYIPKDPYPVPHYYPQQPLPLFDSSEMTELVDPDTLFYMFYYRPGTYQ 567
Query: 292 QYLAAKALKKQSWRFHTKYMMWFQRHEEPKLINEDYEQGTYIYFDNE-KWSQRKKEGFTF 350
QY+A + LKKQSWRFH KY WFQRHEEPK+I +++E G+Y YFD E W QRKK F F
Sbjct: 568 QYIAGQELKKQSWRFHKKYTTWFQRHEEPKMITDEFESGSYRYFDFEGDWVQRKKADFRF 627
Query: 351 EYKYLEDRD 359
Y+YLED D
Sbjct: 628 TYQYLEDDD 636
>sp|Q52JK6|VIP2_NICBE Probable NOT transcription complex subunit VIP2 (Fragment)
OS=Nicotiana benthamiana GN=VIP2 PE=1 SV=1
Length = 603
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 55/105 (52%), Gaps = 4/105 (3%)
Query: 256 YYPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTKAQYLAAKALKKQSWRFHTKYMMWFQ 315
YY + P P + +F + ++LF+IFY M +AQ AA L + W +H ++ +WF
Sbjct: 495 YYAKQPPPLNQA--YFSKFQLDTLFYIFYSMPKDEAQLYAANELYNRGWFYHREHRLWFM 552
Query: 316 R--HEEPKLINEDYEQGTYIYFDNEKWSQRKKEGFTFEYKYLEDR 358
R + EP + YE+G+YI FD W K+ F + LE R
Sbjct: 553 RVANMEPLVKTNAYERGSYICFDPNTWETIHKDNFVLHCEMLEKR 597
>sp|Q9FPW4|VIP2_ARATH Probable NOT transcription complex subunit VIP2 OS=Arabidopsis
thaliana GN=VIP2 PE=1 SV=2
Length = 614
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 49/88 (55%)
Query: 271 FQRLSTESLFFIFYYMEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKLINEDYEQG 330
F+R S E LF+ FY M +AQ AA L ++ W +H + +WF R EP + YE+G
Sbjct: 521 FKRFSYELLFYTFYSMPKDEAQLYAADELYERGWFYHKELRVWFFRVGEPLVRAATYERG 580
Query: 331 TYIYFDNEKWSQRKKEGFTFEYKYLEDR 358
TY Y D + +KE F +Y+ +E R
Sbjct: 581 TYEYLDPNSFKTVRKEHFVIKYELMEKR 608
>sp|Q9NZN8|CNOT2_HUMAN CCR4-NOT transcription complex subunit 2 OS=Homo sapiens GN=CNOT2
PE=1 SV=1
Length = 540
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 277 ESLFFIFYYMEGTKA-QYLAAKALKKQSWRFHTKYMMWFQR--HEEPKLINEDYEQGTYI 333
E L F YYM G Q LAA L + WR+H + +W R EP + YE+GTY
Sbjct: 441 EDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYY 500
Query: 334 YFDNEKWSQRKKEGFTFEYKYLEDR 358
+FD W + KE F EY LE+R
Sbjct: 501 FFDCLNWRKVAKE-FHLEYDKLEER 524
>sp|Q8C5L3|CNOT2_MOUSE CCR4-NOT transcription complex subunit 2 OS=Mus musculus GN=Cnot2
PE=2 SV=2
Length = 540
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 277 ESLFFIFYYMEGTKA-QYLAAKALKKQSWRFHTKYMMWFQR--HEEPKLINEDYEQGTYI 333
E L F YYM G Q LAA L + WR+H + +W R EP + YE+GTY
Sbjct: 441 EDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYY 500
Query: 334 YFDNEKWSQRKKEGFTFEYKYLEDR 358
+FD W + KE F EY LE+R
Sbjct: 501 FFDCLNWRKVAKE-FHLEYDKLEER 524
>sp|P87240|NOT2_SCHPO General negative regulator of transcription subunit 2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=not2 PE=1 SV=2
Length = 306
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 254 PSYYPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTKAQYLAAKALKKQSWRFHTKYMMW 313
P+ Y V P + + F + S E+LF+IFY M Q AA+ L ++WRFH + +W
Sbjct: 196 PACYKNVNPPPAISKIF--QFSDETLFYIFYTMPRDVMQEAAAQELTNRNWRFHKELRVW 253
Query: 314 FQ--RHEEPKLINEDYEQGTYIYFDNEKWSQRKKEGFTFEYKYLEDR 358
+P +E+G Y++FD W +R K+ F Y LEDR
Sbjct: 254 LTPVPGMKPLQRTPQFERGYYMFFDPIHW-KRIKKDFLLMYAALEDR 299
>sp|P06102|NOT3_YEAST General negative regulator of transcription subunit 3
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=NOT3 PE=1 SV=2
Length = 836
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%)
Query: 264 HSDTLDFFQRLSTESLFFIFYYMEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKLI 323
++ L+ F+ L SLF+ +Y+ + +A K L ++ W+ MWF R E K
Sbjct: 693 YAKILENFRTLEMFSLFYNYYFAITPLEREIAYKILNERDWKVSKDGTMWFLRQGEVKFF 752
Query: 324 NEDYEQGTYIYFDNEKWSQRKKEGFTFEYKYLE 356
NE E G Y F + W+ K F +Y +L+
Sbjct: 753 NEICEVGDYKIFKLDDWTVIDKINFRLDYSFLQ 785
>sp|Q94547|RGA_DROME Regulator of gene activity OS=Drosophila melanogaster GN=Rga PE=2
SV=2
Length = 585
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
Query: 254 PSYYPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTKAQYLAAKALKKQSWRFHTKYMMW 313
P Y + T ++L + LFF+FY G Q +AA L + WR+H + +W
Sbjct: 468 PEYLINFAIRDKLTAPVLKKLQEDLLFFLFYTNIGDMMQLMAAAELHSREWRYHVEEKIW 527
Query: 314 FQR------HEEPKLINEDYEQGTYIYFDNEKWSQRKK 345
R +E+ N E+GT+ YFD + W + K
Sbjct: 528 ITRIPGIDQYEK----NGTKERGTFYYFDAQSWKRLSK 561
>sp|P06100|NOT2_YEAST General negative regulator of transcription subunit 2
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=CDC36 PE=1 SV=1
Length = 191
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 277 ESLFFIFYYMEGTKAQYLAAKALKKQSWRFHTKYMMWFQRH--EEPKLINED--YEQGTY 332
E+LFF+FY GT Q L L+K++WR+H W + EP +++ D E+G+Y
Sbjct: 110 ETLFFLFYKHPGTVIQELTYLELRKRNWRYHKTLKAWLTKDPMMEP-IVSADGLSERGSY 168
Query: 333 IYFDNEKWSQRKKEGFTF 350
++FD ++W + +++ F
Sbjct: 169 VFFDPQRWEKCQRDFLLF 186
>sp|Q12514|NOT5_YEAST General negative regulator of transcription subunit 5
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=NOT5 PE=1 SV=1
Length = 560
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 7/80 (8%)
Query: 270 FFQRLSTESLFFIFYYMEGTKAQYLAAKAL-KKQSWRFHTKYMMWFQRHEE---PKLINE 325
F + ++LFFIFY+ +G+ Q+LAA+ L K ++W F+ W+ + E P +
Sbjct: 468 IFMKFDLDTLFFIFYHYQGSYEQFLAARELFKNRNWLFNKVDRCWYYKEIEKLPPGMGKS 527
Query: 326 DYEQGTYIYFDNEK-WSQRK 344
E+ ++ YFD +K W R+
Sbjct: 528 --EEESWRYFDYKKSWLARR 545
>sp|Q56702|FLAB_VIBPA Polar flagellin B/D OS=Vibrio parahaemolyticus serotype O3:K6
(strain RIMD 2210633) GN=flaB PE=3 SV=2
Length = 378
Score = 34.7 bits (78), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 67 SEEINASKGMVKPTAVRPLSTTNTSATVPSSSAPSILPQSQQSHNSLMSL 116
+E +NASK +K T +T T + + S ++ SIL Q++Q+ NS +SL
Sbjct: 327 NENVNASKSRIKDTDFAKETTAMTKSQILSQASSSILAQAKQAPNSALSL 376
>sp|P0C6C5|FLAC_VIBCH Flagellin C OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El
Tor Inaba N16961) GN=flaC PE=3 SV=1
Length = 377
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%)
Query: 67 SEEINASKGMVKPTAVRPLSTTNTSATVPSSSAPSILPQSQQSHNSLMSL 116
+E +NASK +K T +T T A + S ++ S+L Q++Q+ NS ++L
Sbjct: 326 NENVNASKSRIKDTDFAKETTALTKAQILSQASSSVLAQAKQAPNSALAL 375
>sp|A5F671|FLAC_VIBC3 Flagellin C OS=Vibrio cholerae serotype O1 (strain ATCC 39541 /
Ogawa 395 / O395) GN=flaC PE=3 SV=1
Length = 377
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%)
Query: 67 SEEINASKGMVKPTAVRPLSTTNTSATVPSSSAPSILPQSQQSHNSLMSL 116
+E +NASK +K T +T T A + S ++ S+L Q++Q+ NS ++L
Sbjct: 326 NENVNASKSRIKDTDFAKETTALTKAQILSQASSSVLAQAKQAPNSALAL 375
>sp|Q5QNQ9|CORA1_MOUSE Collagen alpha-1(XXVII) chain OS=Mus musculus GN=Col27a1 PE=2 SV=1
Length = 1845
Score = 32.3 bits (72), Expect = 5.0, Method: Composition-based stats.
Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 4 LELAGVVPSSATTDSNGTPNSLAST-SPHSPTLGLN--HSAVTECSSSSVEPNAPS--SE 58
L L + + AT + +LA T +P PT L H V+E SSS P +P+ S
Sbjct: 268 LGLGNLTRTPATLGARPVSRALAVTLAPAMPTKPLRTVHPDVSEHSSSQT-PLSPAKQSA 326
Query: 59 KKNKSKMNSEEINASKGMVKPTAVRPLSTTNTSATVPSSSAPSILPQS 106
+K S +S + S + +P A +P T TS T S + PS+ P S
Sbjct: 327 RKTPSPSSSASLANSTRVYRPAAAQPRQITTTSPTKRSPTKPSVSPLS 374
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.126 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143,209,403
Number of Sequences: 539616
Number of extensions: 6316042
Number of successful extensions: 23741
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 510
Number of HSP's that attempted gapping in prelim test: 21255
Number of HSP's gapped (non-prelim): 2475
length of query: 361
length of database: 191,569,459
effective HSP length: 119
effective length of query: 242
effective length of database: 127,355,155
effective search space: 30819947510
effective search space used: 30819947510
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)