Query psy4909
Match_columns 361
No_of_seqs 179 out of 393
Neff 3.3
Searched_HMMs 29240
Date Fri Aug 16 20:55:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4909.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4909hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pa7_A DTDP-6-deoxy-3,4-keto-h 11.4 1.3E+02 0.0044 25.4 2.6 33 274-317 31-63 (141)
2 2jg6_A DNA-3-methyladenine gly 10.4 76 0.0026 28.7 0.8 18 290-307 140-157 (186)
3 2ofk_A 3-methyladenine DNA gly 8.8 91 0.0031 28.0 0.6 18 290-307 140-157 (183)
4 1jer_A Cucumber stellacyanin; 8.4 59 0.002 27.6 -0.7 30 301-338 11-43 (138)
5 1yz8_P Pituitary homeobox 2; D 7.5 5E+02 0.017 18.4 4.1 26 213-241 8-33 (68)
6 2e19_A Transcription factor 8; 6.2 3.3E+02 0.011 19.6 2.6 20 221-240 13-32 (64)
7 4ekf_A Adenain; alpha and beta 6.2 60 0.0021 29.9 -1.8 28 331-358 66-94 (204)
8 2da1_A Alpha-fetoprotein enhan 5.4 3E+02 0.01 19.5 1.9 25 213-240 12-36 (70)
9 2dn0_A Zinc fingers and homeob 4.8 2.9E+02 0.01 20.1 1.5 22 220-241 17-38 (76)
10 1ig7_A Homeotic protein MSX-1; 4.7 2.5E+02 0.0086 19.2 1.0 20 221-240 10-29 (58)
No 1
>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A*
Probab=11.42 E-value=1.3e+02 Score=25.43 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=25.6
Q ss_pred CCCcceEEEeecCCccHHHHHHHHHHhccCceeeccceeeeecc
Q psy4909 274 LSTESLFFIFYYMEGTKAQYLAAKALKKQSWRFHTKYMMWFQRH 317 (361)
Q Consensus 274 fd~ETLFYIFYy~PGd~qQ~lAAkELkkRgWRYHKkyktWFqR~ 317 (361)
|+..-+||||=+-+|. -|||..|++...||...
T Consensus 31 f~ikRvy~~~~~~~g~-----------~RG~H~Hk~~~q~li~l 63 (141)
T 2pa7_A 31 FSIKRVYYIFDTKGEE-----------PRGFHAHKKLEQVLVCL 63 (141)
T ss_dssp SCCCEEEEEESCCSSC-----------CEEEEEESSCCEEEEEE
T ss_pred CCccEEEEEEecCCCC-----------EECcCcCCCceEEEEEE
Confidence 3556677777666776 49999999999998775
No 2
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A
Probab=10.41 E-value=76 Score=28.68 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhccCceee
Q psy4909 290 KAQYLAAKALKKQSWRFH 307 (361)
Q Consensus 290 ~qQ~lAAkELkkRgWRYH 307 (361)
.+=..-+++|++|||+|=
T Consensus 140 ~~S~~lsKdLKkrGFkFv 157 (186)
T 2jg6_A 140 DTATQLSKDLKQYGFKFL 157 (186)
T ss_dssp HHHHHHHHHHHTTTCCSC
T ss_pred HHHHHHHHHHHHCCCeee
Confidence 344467899999999984
No 3
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A*
Probab=8.75 E-value=91 Score=28.04 Aligned_cols=18 Identities=44% Similarity=0.527 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhccCceee
Q psy4909 290 KAQYLAAKALKKQSWRFH 307 (361)
Q Consensus 290 ~qQ~lAAkELkkRgWRYH 307 (361)
.+=..-+++||+|||||=
T Consensus 140 ~~S~~lsk~LKkrGfkFv 157 (183)
T 2ofk_A 140 PASDALAKALKKRGFKFV 157 (183)
T ss_dssp HHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHHHHHHhCCCeec
Confidence 334456899999999984
No 4
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=8.40 E-value=59 Score=27.65 Aligned_cols=30 Identities=17% Similarity=0.484 Sum_probs=23.9
Q ss_pred ccCceee---ccceeeeeccCCCcccCCceeeeeEEEEccc
Q psy4909 301 KQSWRFH---TKYMMWFQRHEEPKLINEDYEQGTYIYFDNE 338 (361)
Q Consensus 301 kRgWRYH---KkyktWFqR~~ePk~ite~~EqGtY~YFDye 338 (361)
.+||.+. ..|..|-.+. .+..|+.++|.|.
T Consensus 11 ~~GW~~~~~~~~Y~~Wa~~~--------~F~vGD~LvF~y~ 43 (138)
T 1jer_A 11 NTGWSVPSSPNFYSQWAAGK--------TFRVGDSLQFNFP 43 (138)
T ss_dssp GGCSSCCSSTTHHHHHHHTC--------CEETTCEEEECCC
T ss_pred cCcCcCCCCccchhhhhcCC--------cCcCCCEEEEeec
Confidence 3689998 7799997663 4677999999987
No 5
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=7.50 E-value=5e+02 Score=18.38 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=18.0
Q ss_pred CCCchhhhhHHHHHHHHhhcCCCCCCccc
Q psy4909 213 QPLHKAHHYQYQLVDQAYHHLPTPADSER 241 (361)
Q Consensus 213 ~~ltke~~~q~~mLEaS~~~~P~p~DsEr 241 (361)
+.++.+ |+..||..|...+.|...++
T Consensus 8 t~ft~~---Q~~~Le~~F~~~~yp~~~~r 33 (68)
T 1yz8_P 8 THFTSQ---QLQQLEATFQRNRYPDMSTR 33 (68)
T ss_dssp CCCCHH---HHHHHHHHHTTCSSCCTTTT
T ss_pred CCCCHH---HHHHHHHHHHccCCCCHHHH
Confidence 445554 77889999988777755543
No 6
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=6.25 E-value=3.3e+02 Score=19.63 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=14.9
Q ss_pred hHHHHHHHHhhcCCCCCCcc
Q psy4909 221 YQYQLVDQAYHHLPTPADSE 240 (361)
Q Consensus 221 ~q~~mLEaS~~~~P~p~DsE 240 (361)
.|+..||..|...+.|...+
T Consensus 13 ~Ql~~Le~~F~~~~yp~~~~ 32 (64)
T 2e19_A 13 NLLSLLKAYYALNAQPSAEE 32 (64)
T ss_dssp HHHHHHHHHHTTCSSCCHHH
T ss_pred HHHHHHHHHHhcCCCcCHHH
Confidence 47788999998777774444
No 7
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=6.15 E-value=60 Score=29.94 Aligned_cols=28 Identities=32% Similarity=0.548 Sum_probs=22.2
Q ss_pred eEEEEccccccccc-ccceeEeccccccc
Q psy4909 331 TYIYFDNEKWSQRK-KEGFTFEYKYLEDR 358 (361)
Q Consensus 331 tY~YFDye~W~~r~-KedFtFeY~~LEd~ 358 (361)
++.+|||-.|+..+ +.-+.|+|+-|-.|
T Consensus 66 ~~YmFDPfG~sd~~L~qiY~F~Y~~llkR 94 (204)
T 4ekf_A 66 TCYLFEPFGFSDQRLKQVYQFEYESLLRR 94 (204)
T ss_dssp EEEEECTBTTCSHHHHHHHHHHHHHHHHH
T ss_pred eEEEeCCCCCCHHHHHHHhhhhHHHHHHH
Confidence 78999999998766 55688999876554
No 8
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=5.39 E-value=3e+02 Score=19.54 Aligned_cols=25 Identities=12% Similarity=0.321 Sum_probs=16.6
Q ss_pred CCCchhhhhHHHHHHHHhhcCCCCCCcc
Q psy4909 213 QPLHKAHHYQYQLVDQAYHHLPTPADSE 240 (361)
Q Consensus 213 ~~ltke~~~q~~mLEaS~~~~P~p~DsE 240 (361)
+.++.+ |+..||..|...+.|...+
T Consensus 12 t~ft~~---q~~~Le~~F~~~~yp~~~~ 36 (70)
T 2da1_A 12 TRITDD---QLRVLRQYFDINNSPSEEQ 36 (70)
T ss_dssp CCCCHH---HHHHHHHHHHHCSSCCTTH
T ss_pred CCCCHH---HHHHHHHHHHHCCCCCHHH
Confidence 344544 7778999998776664444
No 9
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=4.80 E-value=2.9e+02 Score=20.12 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=15.8
Q ss_pred hhHHHHHHHHhhcCCCCCCccc
Q psy4909 220 HYQYQLVDQAYHHLPTPADSER 241 (361)
Q Consensus 220 ~~q~~mLEaS~~~~P~p~DsEr 241 (361)
..|+..||..|...+.|...++
T Consensus 17 ~~Ql~~Le~~F~~~~yp~~~~r 38 (76)
T 2dn0_A 17 HEQLSALKGSFCRNQFPGQSEV 38 (76)
T ss_dssp HHHHHHHHHHHHHSSSCCSHHH
T ss_pred HHHHHHHHHHHhcCCCcCHHHH
Confidence 3477889999987777755443
No 10
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=4.70 E-value=2.5e+02 Score=19.18 Aligned_cols=20 Identities=10% Similarity=0.097 Sum_probs=14.9
Q ss_pred hHHHHHHHHhhcCCCCCCcc
Q psy4909 221 YQYQLVDQAYHHLPTPADSE 240 (361)
Q Consensus 221 ~q~~mLEaS~~~~P~p~DsE 240 (361)
.|+..||..|...+.|...+
T Consensus 10 ~Q~~~Le~~F~~~~yp~~~~ 29 (58)
T 1ig7_A 10 AQLLALERKFRQKQYLSIAE 29 (58)
T ss_dssp HHHHHHHHHHHHCSCCCHHH
T ss_pred HHHHHHHHHHhcCCCcCHHH
Confidence 46778999998877775444
Done!