Query psy4909
Match_columns 361
No_of_seqs 179 out of 393
Neff 3.3
Searched_HMMs 13730
Date Fri Aug 16 20:55:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4909.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4909hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2pa7a1 b.82.1.1 (A:2-136) dTD 17.3 18 0.0013 27.8 0.9 18 301-318 44-61 (135)
2 d1a9xa3 c.30.1.1 (A:1-127) Car 10.9 55 0.004 25.7 2.1 49 289-344 27-75 (127)
3 d1yz8p1 a.4.1.1 (P:1-60) Pitui 10.4 86 0.0063 20.9 2.7 21 221-241 11-31 (60)
4 d2ecca1 a.4.1.1 (A:1-76) Homeo 9.6 45 0.0032 23.4 1.0 21 221-241 13-33 (76)
5 d2e1oa1 a.4.1.1 (A:8-64) Homeo 8.3 80 0.0058 20.9 1.8 27 211-240 3-29 (57)
6 d1nlna_ d.3.1.7 (A:) Human ade 8.3 28 0.002 30.0 -0.8 28 331-358 65-93 (203)
7 d1p7ia_ a.4.1.1 (A:) Engrailed 8.1 57 0.0042 21.4 1.0 25 213-240 4-28 (53)
8 d1a9xa4 c.30.1.1 (A:556-676) C 7.9 1.1E+02 0.0078 23.9 2.7 48 289-343 24-71 (121)
9 d2ecba1 a.4.1.1 (A:8-83) Zinc 7.4 63 0.0046 22.6 1.0 21 221-241 14-34 (76)
10 d1au7a1 a.4.1.1 (A:103-160) Pi 7.2 63 0.0046 21.6 0.8 21 221-241 9-29 (58)
No 1
>d2pa7a1 b.82.1.1 (A:2-136) dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Aneurinibacillus thermoaerophilus [TaxId: 143495]}
Probab=17.35 E-value=18 Score=27.77 Aligned_cols=18 Identities=11% Similarity=0.080 Sum_probs=15.5
Q ss_pred ccCceeeccceeeeeccC
Q psy4909 301 KQSWRFHTKYMMWFQRHE 318 (361)
Q Consensus 301 kRgWRYHKkyktWFqR~~ 318 (361)
-|||.||++..+||.-..
T Consensus 44 iRG~H~Hk~~~q~~~vi~ 61 (135)
T d2pa7a1 44 PRGFHAHKKLEQVLVCLN 61 (135)
T ss_dssp CEEEEEESSCCEEEEEEE
T ss_pred EEeeeccccccEEEEecc
Confidence 499999999999987753
No 2
>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}
Probab=10.89 E-value=55 Score=25.74 Aligned_cols=49 Identities=22% Similarity=0.359 Sum_probs=38.4
Q ss_pred cHHHHHHHHHHhccCceeeccceeeeeccCCCcccCCceeeeeEEEEccccccccc
Q psy4909 289 TKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKLINEDYEQGTYIYFDNEKWSQRK 344 (361)
Q Consensus 289 d~qQ~lAAkELkkRgWRYHKkyktWFqR~~ePk~ite~~EqGtY~YFDye~W~~r~ 344 (361)
||.-..|+++|++.|++ =+.-..+|..+.-++...+-+||++-+|+.+.
T Consensus 27 Dy~~~~a~~alke~g~~-------~iliN~NP~TVstd~d~aD~lYfePlt~e~v~ 75 (127)
T d1a9xa3 27 DYSGAQACKALREEGYR-------VINVNSNPATIMTDPEMADATYIEPIHWEVVR 75 (127)
T ss_dssp HHHHHHHHHHHHHHTCE-------EEEECSCTTCGGGCGGGSSEEECSCCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCe-------EEEecCchHhhhcChhhcceeeeecCCHHHHH
Confidence 78889999999999987 22334567777777888899999998876544
No 3
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.37 E-value=86 Score=20.88 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=16.5
Q ss_pred hHHHHHHHHhhcCCCCCCccc
Q psy4909 221 YQYQLVDQAYHHLPTPADSER 241 (361)
Q Consensus 221 ~q~~mLEaS~~~~P~p~DsEr 241 (361)
.|+.+||+.|...|.|...++
T Consensus 11 ~Q~~~Le~~F~~~~yP~~~~r 31 (60)
T d1yz8p1 11 QQLQQLEATFQRNRYPDMSTR 31 (60)
T ss_dssp HHHHHHHHHHTTCSSCCTTTT
T ss_pred HHHHHHHHHHHHcCCCChHHH
Confidence 477889999998888866554
No 4
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.62 E-value=45 Score=23.41 Aligned_cols=21 Identities=5% Similarity=0.042 Sum_probs=16.8
Q ss_pred hHHHHHHHHhhcCCCCCCccc
Q psy4909 221 YQYQLVDQAYHHLPTPADSER 241 (361)
Q Consensus 221 ~q~~mLEaS~~~~P~p~DsEr 241 (361)
.|+.+||..|...|.|...++
T Consensus 13 eQ~~~Le~~F~~n~~Ps~~~~ 33 (76)
T d2ecca1 13 EQLAILKSFFLQCQWARREDY 33 (76)
T ss_dssp HHHHHHHHHHHHCSSCCHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHH
Confidence 577889999998888876654
No 5
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.30 E-value=80 Score=20.94 Aligned_cols=27 Identities=11% Similarity=0.110 Sum_probs=19.3
Q ss_pred CCCCCchhhhhHHHHHHHHhhcCCCCCCcc
Q psy4909 211 GPQPLHKAHHYQYQLVDQAYHHLPTPADSE 240 (361)
Q Consensus 211 Gp~~ltke~~~q~~mLEaS~~~~P~p~DsE 240 (361)
|.+.+|. .|+..||..|...+.|...+
T Consensus 3 ~R~~ft~---~Q~~~Le~~F~~n~yp~~~~ 29 (57)
T d2e1oa1 3 GQVRFSN---DQTIELEKKFETQKYLSPPE 29 (57)
T ss_dssp CCCCCCH---HHHHHHHHHHHHCSSCCHHH
T ss_pred CCccCCH---HHHHHHHHHHHhCCCCCHHH
Confidence 4456664 46788999999888885444
No 6
>d1nlna_ d.3.1.7 (A:) Human adenovirus 2 proteinase, adenain {Mastadenovirus H2 [TaxId: 10515]}
Probab=8.28 E-value=28 Score=29.96 Aligned_cols=28 Identities=32% Similarity=0.548 Sum_probs=22.5
Q ss_pred eEEEEccccccccc-ccceeEeccccccc
Q psy4909 331 TYIYFDNEKWSQRK-KEGFTFEYKYLEDR 358 (361)
Q Consensus 331 tY~YFDye~W~~r~-KedFtFeY~~LEd~ 358 (361)
++.+|||-.|+.++ |.-+.|+|+-|-.|
T Consensus 65 t~Y~FDPfGfsd~~L~q~Y~FeY~~llkR 93 (203)
T d1nlna_ 65 TCYLFEPFGFSDQRLKQVYQFEYESLLRR 93 (203)
T ss_dssp EEEEECTTCCCHHHHHHHHCCCCHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHhhhhHHHHHHH
Confidence 78999999998766 55689999877554
No 7
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]}
Probab=8.10 E-value=57 Score=21.37 Aligned_cols=25 Identities=4% Similarity=0.114 Sum_probs=17.7
Q ss_pred CCCchhhhhHHHHHHHHhhcCCCCCCcc
Q psy4909 213 QPLHKAHHYQYQLVDQAYHHLPTPADSE 240 (361)
Q Consensus 213 ~~ltke~~~q~~mLEaS~~~~P~p~DsE 240 (361)
+.+|.+ |+.+||..|...|.|...+
T Consensus 4 t~ft~~---Q~~~Le~~F~~~~yp~~~~ 28 (53)
T d1p7ia_ 4 TAFSSE---QLARLKREFNENRYLTERR 28 (53)
T ss_dssp CCCCHH---HHHHHHHHHHHCSSCCHHH
T ss_pred ccCCHH---HHHHHHHHHHHCCCCCHHH
Confidence 344544 7788999999888886444
No 8
>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}
Probab=7.94 E-value=1.1e+02 Score=23.89 Aligned_cols=48 Identities=17% Similarity=0.316 Sum_probs=37.0
Q ss_pred cHHHHHHHHHHhccCceeeccceeeeeccCCCcccCCceeeeeEEEEcccccccc
Q psy4909 289 TKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKLINEDYEQGTYIYFDNEKWSQR 343 (361)
Q Consensus 289 d~qQ~lAAkELkkRgWRYHKkyktWFqR~~ePk~ite~~EqGtY~YFDye~W~~r 343 (361)
||.-..|+++|++.|++ =+.-..+|..++-+++..+-+||++-+|+.+
T Consensus 24 Dy~~~~a~~aLk~~g~~-------~IliN~NPeTVstd~d~aD~lYfeplt~e~v 71 (121)
T d1a9xa4 24 DYCCVHASLALREDGYE-------TIMVNCNPETVSTDYDTSDRLYFEPVTLEDV 71 (121)
T ss_dssp HHHHHHHHHHHHHTTCE-------EEEECCCTTSSTTSTTSSSEEECCCCSHHHH
T ss_pred hHHHHHHHHHHHhcCCe-------EEEEecChhhhhcChhhcCceEEccCCHHHH
Confidence 77888999999998865 2223457777777888899999999876553
No 9
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.39 E-value=63 Score=22.61 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=16.7
Q ss_pred hHHHHHHHHhhcCCCCCCccc
Q psy4909 221 YQYQLVDQAYHHLPTPADSER 241 (361)
Q Consensus 221 ~q~~mLEaS~~~~P~p~DsEr 241 (361)
.|++.||..|...|.|...++
T Consensus 14 ~Q~~~Le~~F~~~~~P~~~~r 34 (76)
T d2ecba1 14 EQLRVLQASFLNSSVLTDEEL 34 (76)
T ss_dssp HHHHHHHHHHHHCSSCCHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHH
Confidence 488999999998888765553
No 10
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=7.17 E-value=63 Score=21.57 Aligned_cols=21 Identities=10% Similarity=0.219 Sum_probs=16.6
Q ss_pred hHHHHHHHHhhcCCCCCCccc
Q psy4909 221 YQYQLVDQAYHHLPTPADSER 241 (361)
Q Consensus 221 ~q~~mLEaS~~~~P~p~DsEr 241 (361)
.|..+||..|...|.|...++
T Consensus 9 ~q~~~Le~~F~~~~~P~~~~~ 29 (58)
T d1au7a1 9 AAKDALERHFGEHSKPSSQEI 29 (58)
T ss_dssp HHHHHHHHHHHHCSSCCHHHH
T ss_pred HHHHHHHHHHHHccCCCHHHH
Confidence 477889999999988865553
Done!