Your job contains 1 sequence.
>psy4909
LDELELAGVVPSSATTDSNGTPNSLASTSPHSPTLGLNHSAVTECSSSSVEPNAPSSEKK
NKSKMNSEEINASKGMVKPTAVRPLSTTNTSATVPSSSAPSILPQSQQSHNSLMSLNHGT
SGATHLRVTNTRAVLNLRRRPPATTTTLTPPPHLWRSRVIAQDVLDKAGLELPPPASDSN
SQQQQQQEVYDKSLAPSEAHIPYMLGVVPLGPQPLHKAHHYQYQLVDQAYHHLPTPADSE
RLRHYITRTPCTTPSYYPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTKAQYLAAKALK
KQSWRFHTKYMMWFQRHEEPKLINEDYEQGTYIYFDNEKWSQRKKEGFTFEYKYLEDRDL
N
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy4909
(361 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0033029 - symbol:l(2)NC136 "lethal (2) NC136" spec... 639 5.4e-67 2
UNIPROTKB|F6XXD6 - symbol:CNOT3 "Uncharacterized protein"... 612 1.4e-62 2
UNIPROTKB|E1BCS1 - symbol:CNOT3 "Uncharacterized protein"... 612 4.8e-62 2
UNIPROTKB|O75175 - symbol:CNOT3 "CCR4-NOT transcription c... 612 4.8e-62 2
MGI|MGI:2385261 - symbol:Cnot3 "CCR4-NOT transcription co... 605 1.3e-61 2
RGD|1304771 - symbol:Cnot3 "CCR4-NOT transcription comple... 605 2.0e-61 2
UNIPROTKB|E2R344 - symbol:CNOT3 "Uncharacterized protein"... 595 8.8e-61 2
ZFIN|ZDB-GENE-040927-6 - symbol:cnot3a "CCR4-NOT transcri... 579 6.4e-58 2
WB|WBGene00003826 - symbol:ntl-3 species:6239 "Caenorhabd... 455 1.3e-44 2
UNIPROTKB|G5EFX8 - symbol:ntl-3 "Protein NTL-3, isoform a... 455 1.3e-44 2
UNIPROTKB|H0Y5X7 - symbol:CNOT3 "CCR4-NOT transcription c... 453 7.3e-43 1
POMBASE|SPAC1B3.05 - symbol:not3 "CCR4-Not complex subuni... 324 2.4e-30 2
ZFIN|ZDB-GENE-030131-5838 - symbol:cnot3b "CCR4-NOT trans... 325 6.2e-30 2
ASPGD|ASPL0000074489 - symbol:AN4585 species:162425 "Emer... 337 6.8e-30 1
DICTYBASE|DDB_G0272056 - symbol:DDB_G0272056 "putative CC... 339 1.1e-29 1
UNIPROTKB|F1RNH3 - symbol:CNOT3 "Uncharacterized protein"... 313 9.3e-29 2
TAIR|locus:2172389 - symbol:AT5G18230 species:3702 "Arabi... 320 1.1e-27 1
UNIPROTKB|H7C5J4 - symbol:CNOT3 "CCR4-NOT transcription c... 164 8.4e-25 2
CGD|CAL0005191 - symbol:orf19.6075 species:5476 "Candida ... 145 8.1e-10 1
UNIPROTKB|Q52JK6 - symbol:VIP2 "Probable NOT transcriptio... 151 6.8e-08 1
TAIR|locus:2174259 - symbol:VIP2 "VIRE2 interacting prote... 148 1.5e-07 2
TAIR|locus:505006107 - symbol:NOT2a "Negative on TATA les... 146 2.6e-07 1
ZFIN|ZDB-GENE-070410-70 - symbol:zgc:162316 "zgc:162316" ... 134 1.6e-06 2
POMBASE|SPCC4G3.15c - symbol:not2 "CCR4-Not complex subun... 128 8.6e-06 1
UNIPROTKB|F1MID5 - symbol:CNOT2 "Uncharacterized protein"... 129 1.2e-05 1
UNIPROTKB|F1M3V0 - symbol:Cnot2 "Protein Cnot2" species:1... 129 1.6e-05 1
UNIPROTKB|Q5ZKI3 - symbol:CNOT2 "Uncharacterized protein"... 129 1.7e-05 1
UNIPROTKB|F8VV52 - symbol:CNOT2 "CCR4-NOT transcription c... 129 1.8e-05 1
UNIPROTKB|F1LY92 - symbol:Cnot2 "Protein Cnot2" species:1... 129 1.8e-05 1
UNIPROTKB|E1BCE7 - symbol:CNOT2 "Uncharacterized protein"... 129 1.8e-05 1
UNIPROTKB|E2QSF5 - symbol:CNOT2 "Uncharacterized protein"... 129 1.8e-05 1
UNIPROTKB|Q9NZN8 - symbol:CNOT2 "CCR4-NOT transcription c... 129 1.8e-05 1
MGI|MGI:1919318 - symbol:Cnot2 "CCR4-NOT transcription co... 129 1.8e-05 1
UNIPROTKB|F1SH40 - symbol:CNOT2 "Uncharacterized protein"... 129 1.9e-05 1
UNIPROTKB|F1LUT7 - symbol:Cnot2 "Protein Cnot2" species:1... 129 1.9e-05 1
UNIPROTKB|H0YHT6 - symbol:CNOT2 "CCR4-NOT transcription c... 105 2.3e-05 1
SGD|S000002324 - symbol:CDC36 "Component of the CCR4-NOT ... 110 4.2e-05 2
DICTYBASE|DDB_G0284577 - symbol:DDB_G0284577 "putative CC... 125 5.8e-05 1
WB|WBGene00003825 - symbol:ntl-2 species:6239 "Caenorhabd... 120 0.00014 1
UNIPROTKB|Q10923 - symbol:ntl-2 "Protein NTL-2, isoform a... 120 0.00014 1
>FB|FBgn0033029 [details] [associations]
symbol:l(2)NC136 "lethal (2) NC136" species:7227 "Drosophila
melanogaster" [GO:0006351 "transcription, DNA-dependent"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030014 "CCR4-NOT complex" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP] [GO:0022008 "neurogenesis"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 EMBL:AE013599
GO:GO:0005634 GO:GO:0005737 GO:GO:0022008 GO:GO:0006355
GO:GO:0030014 GO:GO:0000289 eggNOG:COG5665 KO:K12580
GeneTree:ENSGT00390000014743 OMA:ESIYHLP EMBL:AY069428
EMBL:BT083390 RefSeq:NP_610176.1 UniGene:Dm.2133 IntAct:Q7K126
STRING:Q7K126 EnsemblMetazoa:FBtr0086062 EnsemblMetazoa:FBtr0331970
GeneID:35501 KEGG:dme:Dmel_CG8426 UCSC:CG8426-RA
FlyBase:FBgn0033029 InParanoid:Q7K126 OrthoDB:EOG4NVX23
ChiTaRS:l(2)NC136 GenomeRNAi:35501 NextBio:793729 Uniprot:Q7K126
Length = 844
Score = 639 (230.0 bits), Expect = 5.4e-67, Sum P(2) = 5.4e-67
Identities = 110/170 (64%), Positives = 134/170 (78%)
Query: 192 KSLAPSEAHIPYMLGVVPLGPQPLHKAHHYQYQLVDQAYHHLPTPADSERLRHYITRTPC 251
+ +A +EAHIP +LGV PLGP PL K H Q+Q+++ AY+HLP P D+E+L+ Y R P
Sbjct: 675 QQMATTEAHIPTLLGVTPLGPTPLQKEHQMQFQMMEAAYYHLPQPMDTEKLQTYFHRAPV 734
Query: 252 TTPSYYPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTXXXXXXXXXXXXXSWRFHTKYM 311
TPS+YPQ +P DT++F+QRLSTE+LFF+FYYMEG+ SWRFHTKYM
Sbjct: 735 LTPSHYPQAQMPIYDTVEFYQRLSTETLFFVFYYMEGSKAQYLAAKALKKQSWRFHTKYM 794
Query: 312 MWFQRHEEPKLINEDYEQGTYIYFDNEKWSQRKKEGFTFEYKYLEDRDLN 361
MWFQRHEEPK+IN+DYEQGTYIYFD EKWSQRKKEGFTFEYKYLED++LN
Sbjct: 795 MWFQRHEEPKIINDDYEQGTYIYFDYEKWSQRKKEGFTFEYKYLEDKELN 844
Score = 60 (26.2 bits), Expect = 5.4e-67, Sum P(2) = 5.4e-67
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 1 LDELELAGVVPSSATTDSNGTPNSLASTSPHSPTLG 36
LDE+EL+G +ATTDSN + + S SP S T G
Sbjct: 236 LDEVELSG----TATTDSNNSNET--SGSPSSVTSG 265
Score = 40 (19.1 bits), Expect = 6.8e-65, Sum P(2) = 6.8e-65
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 22 PNSLASTSPHSPTL 35
P +A+T H PTL
Sbjct: 674 PQQMATTEAHIPTL 687
Score = 39 (18.8 bits), Expect = 8.7e-65, Sum P(2) = 8.7e-65
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 8 GVVPSSATTDSNGTPNSLASTSPHSPTLG 36
G +S + S P + + P++PT G
Sbjct: 427 GGTGASQSASSGNNPGNNPAVQPNAPTPG 455
>UNIPROTKB|F6XXD6 [details] [associations]
symbol:CNOT3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005634
GO:GO:0006355 CTD:4849 KO:K12580 GeneTree:ENSGT00390000014743
OMA:ESIYHLP EMBL:AAEX03000741 Ensembl:ENSCAFT00000004262
RefSeq:XP_541428.3 GeneID:484312 KEGG:cfa:484312 Uniprot:F6XXD6
Length = 753
Score = 612 (220.5 bits), Expect = 1.4e-62, Sum P(2) = 1.4e-62
Identities = 107/164 (65%), Positives = 126/164 (76%)
Query: 197 SEAHIPYMLGVVPLGPQPLHKAHHYQYQLVDQAYHHLPTPADSERLRHYITRTPCTTPSY 256
SE +IP LGV PLGP PL K YQ + + A+HH+P P+DSER+R Y+ R PC TP Y
Sbjct: 589 SEVNIPLSLGVCPLGPVPLTKEQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPY 648
Query: 257 YPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTXXXXXXXXXXXXXSWRFHTKYMMWFQR 316
+ Q+P PHSDT++F+QRLSTE+LFFIFYY+EGT SWRFHTKYMMWFQR
Sbjct: 649 HHQMPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQR 708
Query: 317 HEEPKLINEDYEQGTYIYFDNEKWSQRKKEGFTFEYKYLEDRDL 360
HEEPK I +++EQGTYIYFD EKW QRKKEGFTFEY+YLEDRDL
Sbjct: 709 HEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDL 752
Score = 45 (20.9 bits), Expect = 1.4e-62, Sum P(2) = 1.4e-62
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 11 PSSATTDSNGTPNSLASTSPHSPTLGLNHSA 41
P AT+ + TP + +++P +PT L A
Sbjct: 327 PPPATSALSTTPGNNGASTPAAPTSALGPKA 357
Score = 40 (19.1 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 18 SNGTPNSLASTSPHSPT 34
S+ TP S S+SP P+
Sbjct: 257 SSSTPTSTTSSSPIPPS 273
>UNIPROTKB|E1BCS1 [details] [associations]
symbol:CNOT3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005634
GO:GO:0006355 GO:GO:0000932 CTD:4849 KO:K12580
GeneTree:ENSGT00390000014743 OMA:ESIYHLP EMBL:DAAA02047818
IPI:IPI00685943 RefSeq:XP_002695478.1 Ensembl:ENSBTAT00000019836
GeneID:527305 KEGG:bta:527305 NextBio:20874556 Uniprot:E1BCS1
Length = 744
Score = 612 (220.5 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 107/164 (65%), Positives = 126/164 (76%)
Query: 197 SEAHIPYMLGVVPLGPQPLHKAHHYQYQLVDQAYHHLPTPADSERLRHYITRTPCTTPSY 256
SE +IP LGV PLGP PL K YQ + + A+HH+P P+DSER+R Y+ R PC TP Y
Sbjct: 580 SEVNIPLSLGVCPLGPVPLTKEQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPY 639
Query: 257 YPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTXXXXXXXXXXXXXSWRFHTKYMMWFQR 316
+ Q+P PHSDT++F+QRLSTE+LFFIFYY+EGT SWRFHTKYMMWFQR
Sbjct: 640 HHQMPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQR 699
Query: 317 HEEPKLINEDYEQGTYIYFDNEKWSQRKKEGFTFEYKYLEDRDL 360
HEEPK I +++EQGTYIYFD EKW QRKKEGFTFEY+YLEDRDL
Sbjct: 700 HEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDL 743
Score = 40 (19.1 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 18 SNGTPNSLASTSPHSPT 34
S+ TP S S+SP P+
Sbjct: 257 SSSTPTSTTSSSPIPPS 273
Score = 39 (18.8 bits), Expect = 6.1e-62, Sum P(2) = 6.1e-62
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 13 SATTDSNGTPNSLASTS 29
SAT SNG P + A S
Sbjct: 335 SATPGSNGAPAAAAPAS 351
>UNIPROTKB|O75175 [details] [associations]
symbol:CNOT3 "CCR4-NOT transcription complex subunit 3"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=ISS]
[GO:2000036 "regulation of stem cell maintenance" evidence=IMP]
[GO:0030014 "CCR4-NOT complex" evidence=IDA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0006351 GO:GO:0000932
GO:GO:0000289 EMBL:AF180474 EMBL:AB014591 EMBL:AL133647
EMBL:BC016474 IPI:IPI00005015 IPI:IPI00186188 IPI:IPI00478453
PIR:T43456 RefSeq:NP_055331.1 UniGene:Hs.343571
ProteinModelPortal:O75175 DIP:DIP-40297N IntAct:O75175
MINT:MINT-1439009 STRING:O75175 PhosphoSite:O75175 PaxDb:O75175
PRIDE:O75175 Ensembl:ENST00000221232 Ensembl:ENST00000358389
Ensembl:ENST00000406403 Ensembl:ENST00000570333
Ensembl:ENST00000570863 Ensembl:ENST00000570970
Ensembl:ENST00000570997 Ensembl:ENST00000571055
Ensembl:ENST00000571119 Ensembl:ENST00000572058
Ensembl:ENST00000572589 Ensembl:ENST00000572598
Ensembl:ENST00000572852 Ensembl:ENST00000573388
Ensembl:ENST00000573528 Ensembl:ENST00000573769
Ensembl:ENST00000574556 Ensembl:ENST00000574815
Ensembl:ENST00000574965 Ensembl:ENST00000575585
Ensembl:ENST00000576314 Ensembl:ENST00000576558
Ensembl:ENST00000576765 Ensembl:ENST00000577005 GeneID:4849
KEGG:hsa:4849 UCSC:uc002qdj.2 CTD:4849 GeneCards:GC19P054641
HGNC:HGNC:7879 HPA:HPA006408 MIM:604910 neXtProt:NX_O75175
PharmGKB:PA26674 eggNOG:COG5665 HOGENOM:HOG000184850
HOVERGEN:HBG051042 InParanoid:O75175 KO:K12580 OMA:IFYYLEP
OrthoDB:EOG41JZDJ PhylomeDB:O75175 GenomeRNAi:4849 NextBio:18674
ArrayExpress:O75175 Bgee:O75175 CleanEx:HS_CNOT3
Genevestigator:O75175 GermOnline:ENSG00000088038 Uniprot:O75175
Length = 753
Score = 612 (220.5 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 107/164 (65%), Positives = 126/164 (76%)
Query: 197 SEAHIPYMLGVVPLGPQPLHKAHHYQYQLVDQAYHHLPTPADSERLRHYITRTPCTTPSY 256
SE +IP LGV PLGP PL K YQ + + A+HH+P P+DSER+R Y+ R PC TP Y
Sbjct: 589 SEVNIPLSLGVCPLGPVPLTKEQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPY 648
Query: 257 YPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTXXXXXXXXXXXXXSWRFHTKYMMWFQR 316
+ Q+P PHSDT++F+QRLSTE+LFFIFYY+EGT SWRFHTKYMMWFQR
Sbjct: 649 HHQMPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQR 708
Query: 317 HEEPKLINEDYEQGTYIYFDNEKWSQRKKEGFTFEYKYLEDRDL 360
HEEPK I +++EQGTYIYFD EKW QRKKEGFTFEY+YLEDRDL
Sbjct: 709 HEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDL 752
Score = 40 (19.1 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 18 SNGTPNSLASTSPHSPT 34
S+ TP S S+SP P+
Sbjct: 257 SSSTPTSTTSSSPIPPS 273
>MGI|MGI:2385261 [details] [associations]
symbol:Cnot3 "CCR4-NOT transcription complex, subunit 3"
species:10090 "Mus musculus" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030014 "CCR4-NOT
complex" evidence=ISO] [GO:2000036 "regulation of stem cell
maintenance" evidence=ISO] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
MGI:MGI:2385261 GO:GO:0005634 GO:GO:0006355 GO:GO:0006351
GO:GO:0000932 CTD:4849 eggNOG:COG5665 HOGENOM:HOG000184850
HOVERGEN:HBG051042 KO:K12580 OrthoDB:EOG41JZDJ EMBL:BC030332
EMBL:BC053437 EMBL:BC141041 IPI:IPI00169667 RefSeq:NP_666288.1
UniGene:Mm.358731 ProteinModelPortal:Q8K0V4 DIP:DIP-46844N
IntAct:Q8K0V4 STRING:Q8K0V4 PhosphoSite:Q8K0V4 PaxDb:Q8K0V4
PRIDE:Q8K0V4 Ensembl:ENSMUST00000038913 GeneID:232791
KEGG:mmu:232791 UCSC:uc009evl.2 GeneTree:ENSGT00390000014743
InParanoid:B2RUA7 OMA:ESIYHLP NextBio:381230 Bgee:Q8K0V4
CleanEx:MM_CNOT3 Genevestigator:Q8K0V4
GermOnline:ENSMUSG00000035632 Uniprot:Q8K0V4
Length = 751
Score = 605 (218.0 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
Identities = 114/207 (55%), Positives = 139/207 (67%)
Query: 160 IAQDVLDKAGLELPPPA---SDSNSXXXXXXEVYDKSLAP---SEAHIPYMLGVVPLGPQ 213
+A+ +G+E P P +D + S P SE +IP LGV PLGP
Sbjct: 544 MAERAAISSGIEDPVPTLHLTDRDIILSSTSAPPTSSQPPLQLSEVNIPLSLGVCPLGPV 603
Query: 214 PLHKAHHYQYQLVDQAYHHLPTPADSERLRHYITRTPCTTPSYYPQVPLPHSDTLDFFQR 273
L K YQ + + A+HH+P P+DSER+R Y+ R PC TP Y+ Q+P PHSDT++F+QR
Sbjct: 604 SLTKEQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQR 663
Query: 274 LSTESLFFIFYYMEGTXXXXXXXXXXXXXSWRFHTKYMMWFQRHEEPKLINEDYEQGTYI 333
LSTE+LFFIFYY+EGT SWRFHTKYMMWFQRHEEPK I +++EQGTYI
Sbjct: 664 LSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYI 723
Query: 334 YFDNEKWSQRKKEGFTFEYKYLEDRDL 360
YFD EKW QRKKEGFTFEY+YLEDRDL
Sbjct: 724 YFDYEKWGQRKKEGFTFEYRYLEDRDL 750
Score = 43 (20.2 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 11 PSSATTDSNGTPNSLASTSPHSPTLGLNHSA 41
P T+ + TP + +++P +PT L A
Sbjct: 327 PPPTTSALSSTPGNNGASTPAAPTSALGPKA 357
Score = 40 (19.1 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 18 SNGTPNSLASTSPHSPT 34
S+ TP S S+SP P+
Sbjct: 257 SSSTPTSTTSSSPIPPS 273
>RGD|1304771 [details] [associations]
symbol:Cnot3 "CCR4-NOT transcription complex, subunit 3"
species:10116 "Rattus norvegicus" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
RGD:1304771 GO:GO:0005634 GO:GO:0006355 GO:GO:0000932 CTD:4849
KO:K12580 OrthoDB:EOG41JZDJ OMA:ESIYHLP EMBL:AC103574 EMBL:AC126217
IPI:IPI00192709 RefSeq:NP_001100941.2 UniGene:Rn.212216
Ensembl:ENSRNOT00000064411 GeneID:308311 KEGG:rno:308311
UCSC:RGD:1304771 NextBio:658574 ArrayExpress:D3ZXE8 Uniprot:D3ZXE8
Length = 751
Score = 605 (218.0 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
Identities = 114/207 (55%), Positives = 139/207 (67%)
Query: 160 IAQDVLDKAGLELPPPA---SDSNSXXXXXXEVYDKSLAP---SEAHIPYMLGVVPLGPQ 213
+A+ +G+E P P +D + S P SE +IP LGV PLGP
Sbjct: 544 MAERAAISSGIEDPVPTLHLTDRDIILSSTSAPPTSSQPPLQLSEVNIPLSLGVCPLGPV 603
Query: 214 PLHKAHHYQYQLVDQAYHHLPTPADSERLRHYITRTPCTTPSYYPQVPLPHSDTLDFFQR 273
L K YQ + + A+HH+P P+DSER+R Y+ R PC TP Y+ Q+P PHSDT++F+QR
Sbjct: 604 SLTKEQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQR 663
Query: 274 LSTESLFFIFYYMEGTXXXXXXXXXXXXXSWRFHTKYMMWFQRHEEPKLINEDYEQGTYI 333
LSTE+LFFIFYY+EGT SWRFHTKYMMWFQRHEEPK I +++EQGTYI
Sbjct: 664 LSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYI 723
Query: 334 YFDNEKWSQRKKEGFTFEYKYLEDRDL 360
YFD EKW QRKKEGFTFEY+YLEDRDL
Sbjct: 724 YFDYEKWGQRKKEGFTFEYRYLEDRDL 750
Score = 41 (19.5 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 11 PSSATTDSNGTPNSLASTSPHSPTLGLNHSA 41
P AT+ + TP + +++P +P L A
Sbjct: 327 PPPATSALSSTPGNNGASTPAAPPSALGPKA 357
Score = 40 (19.1 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 18 SNGTPNSLASTSPHSPT 34
S+ TP S S+SP P+
Sbjct: 257 SSSTPTSTTSSSPIPPS 273
>UNIPROTKB|E2R344 [details] [associations]
symbol:CNOT3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005634
GO:GO:0006355 Ensembl:ENSCAFT00000004262 Uniprot:E2R344
Length = 710
Score = 595 (214.5 bits), Expect = 8.8e-61, Sum P(2) = 8.8e-61
Identities = 106/164 (64%), Positives = 125/164 (76%)
Query: 197 SEAHIPYMLGVVPLGPQPLHKAHHYQYQLVDQAYHHLPTPADSERLRHYITRTPCTTPSY 256
SE +IP LGV PLGP PL K YQ + + A+HH+P P+DSER+R + R PC TP Y
Sbjct: 547 SEVNIPLSLGVCPLGPVPLTKEQLYQQAMEEAAWHHMPHPSDSERIRTF-PRNPCPTPPY 605
Query: 257 YPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTXXXXXXXXXXXXXSWRFHTKYMMWFQR 316
+ Q+P PHSDT++F+QRLSTE+LFFIFYY+EGT SWRFHTKYMMWFQR
Sbjct: 606 HHQMPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQR 665
Query: 317 HEEPKLINEDYEQGTYIYFDNEKWSQRKKEGFTFEYKYLEDRDL 360
HEEPK I +++EQGTYIYFD EKW QRKKEGFTFEY+YLEDRDL
Sbjct: 666 HEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDL 709
Score = 45 (20.9 bits), Expect = 8.8e-61, Sum P(2) = 8.8e-61
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 11 PSSATTDSNGTPNSLASTSPHSPTLGL-NHSA 41
P AT+ + TP + +++P +PT L N +A
Sbjct: 327 PPPATSALSTTPGNNGASTPAAPTSALANRTA 358
Score = 40 (19.1 bits), Expect = 2.9e-60, Sum P(2) = 2.9e-60
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 18 SNGTPNSLASTSPHSPT 34
S+ TP S S+SP P+
Sbjct: 257 SSSTPTSTTSSSPIPPS 273
>ZFIN|ZDB-GENE-040927-6 [details] [associations]
symbol:cnot3a "CCR4-NOT transcription complex,
subunit 3a" species:7955 "Danio rerio" [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
ZFIN:ZDB-GENE-040927-6 GO:GO:0005634 GO:GO:0006355
GeneTree:ENSGT00390000014743 EMBL:CR854927 IPI:IPI00996653
Ensembl:ENSDART00000137699 ArrayExpress:E9QGK5 Bgee:E9QGK5
Uniprot:E9QGK5
Length = 901
Score = 579 (208.9 bits), Expect = 6.4e-58, Sum P(2) = 6.4e-58
Identities = 102/166 (61%), Positives = 123/166 (74%)
Query: 195 APSEAHIPYMLGVVPLGPQPLHKAHHYQYQLVDQAYHHLPTPADSERLRHYITRTPCTTP 254
A SE +P LG PLGP PL K YQ + + A+ H+P P+DSER+R Y+ R PC TP
Sbjct: 735 AVSEVSLPPSLGACPLGPTPLTKEQLYQQAMQEAAWTHMPHPSDSERIRQYLMRNPCPTP 794
Query: 255 SYYPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTXXXXXXXXXXXXXSWRFHTKYMMWF 314
++ Q+P HSD+++F+QRLSTE+LFFIFYY+EGT SWRFHTKYMMWF
Sbjct: 795 PFHHQMPPHHSDSIEFYQRLSTETLFFIFYYLEGTKAQYLSAKALKKQSWRFHTKYMMWF 854
Query: 315 QRHEEPKLINEDYEQGTYIYFDNEKWSQRKKEGFTFEYKYLEDRDL 360
QRHEEPK I +++EQGTYIYFD EKW QRKKEGFTFEY+YLEDRDL
Sbjct: 855 QRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDL 900
Score = 44 (20.5 bits), Expect = 6.4e-58, Sum P(2) = 6.4e-58
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 4 LELAGVVPSSATTDSNGTPNSLASTSPHSPTLGLNHSAVTE 44
L L G +PS TD + S++P PT AV+E
Sbjct: 699 LALDGEIPSLHLTDRDSLELFSGSSAPPGPTTA-PQPAVSE 738
Score = 42 (19.8 bits), Expect = 1.0e-57, Sum P(2) = 1.0e-57
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 8 GVVPSSATTDSNGTPNSLASTSPHSPTLGLNHSAVTE 44
G + S+ TP S S+SP P+ + + E
Sbjct: 245 GHIEDEMFLQSSSTPTSTTSSSPIPPSPATGTTEILE 281
>WB|WBGene00003826 [details] [associations]
symbol:ntl-3 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0006355 GO:GO:0040035 KO:K12580
GeneTree:ENSGT00390000014743 OMA:ESIYHLP EMBL:AL132860 EMBL:Z92826
RefSeq:NP_001076652.1 UniGene:Cel.9672 ProteinModelPortal:G5EFX8
IntAct:G5EFX8 EnsemblMetazoa:Y56A3A.1a.1 EnsemblMetazoa:Y56A3A.1a.2
GeneID:176614 KEGG:cel:CELE_Y56A3A.1 CTD:176614 WormBase:Y56A3A.1a
NextBio:893304 Uniprot:G5EFX8
Length = 701
Score = 455 (165.2 bits), Expect = 1.3e-44, Sum P(2) = 1.3e-44
Identities = 84/166 (50%), Positives = 108/166 (65%)
Query: 196 PSEAHIPYMLGVVPLGPQPLHKAHHYQYQLVDQAYHHLPTPADSERLRHYITRTPCTTPS 255
P AHIP LG PLG + + Q ++ A P DSE+ R+Y+++ PS
Sbjct: 536 PKRAHIPAWLGASPLGRTSMTQEFDGQLAALELACAKATFPLDSEKPRNYLSKVSFPVPS 595
Query: 256 YYPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTXXXXXXXXXXXXXSWRFHTKYMMWFQ 315
+Y Q SD+L+++ RL+ ++LFFIFYYMEGT SWRFHTKY+ WFQ
Sbjct: 596 WYGQTAPNTSDSLEYYLRLAPDTLFFIFYYMEGTRAQLLAAKALKKLSWRFHTKYLTWFQ 655
Query: 316 RHEEPKLINEDYEQGTYIYFDNEKWSQRKKEGFTFEYKYLEDRDLN 361
RHEEPK I +DYEQGTY+YFD EKWSQRKKE FTFEYK+LED++ +
Sbjct: 656 RHEEPKQITDDYEQGTYVYFDFEKWSQRKKESFTFEYKFLEDKEFD 701
Score = 39 (18.8 bits), Expect = 1.3e-44, Sum P(2) = 1.3e-44
Identities = 16/49 (32%), Positives = 20/49 (40%)
Query: 1 LDELELAGVVPSSATTDSNGTPNS--------LASTSPHSPTLGLNHSA 41
+D E V S T+ NG P S L+ SPH+ T L A
Sbjct: 274 IDTAESGAVSGSRHTSGENGQPPSPAGRRIVPLSMPSPHAVTPELKRLA 322
>UNIPROTKB|G5EFX8 [details] [associations]
symbol:ntl-3 "Protein NTL-3, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0006355 GO:GO:0040035 KO:K12580
GeneTree:ENSGT00390000014743 OMA:ESIYHLP EMBL:AL132860 EMBL:Z92826
RefSeq:NP_001076652.1 UniGene:Cel.9672 ProteinModelPortal:G5EFX8
IntAct:G5EFX8 EnsemblMetazoa:Y56A3A.1a.1 EnsemblMetazoa:Y56A3A.1a.2
GeneID:176614 KEGG:cel:CELE_Y56A3A.1 CTD:176614 WormBase:Y56A3A.1a
NextBio:893304 Uniprot:G5EFX8
Length = 701
Score = 455 (165.2 bits), Expect = 1.3e-44, Sum P(2) = 1.3e-44
Identities = 84/166 (50%), Positives = 108/166 (65%)
Query: 196 PSEAHIPYMLGVVPLGPQPLHKAHHYQYQLVDQAYHHLPTPADSERLRHYITRTPCTTPS 255
P AHIP LG PLG + + Q ++ A P DSE+ R+Y+++ PS
Sbjct: 536 PKRAHIPAWLGASPLGRTSMTQEFDGQLAALELACAKATFPLDSEKPRNYLSKVSFPVPS 595
Query: 256 YYPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTXXXXXXXXXXXXXSWRFHTKYMMWFQ 315
+Y Q SD+L+++ RL+ ++LFFIFYYMEGT SWRFHTKY+ WFQ
Sbjct: 596 WYGQTAPNTSDSLEYYLRLAPDTLFFIFYYMEGTRAQLLAAKALKKLSWRFHTKYLTWFQ 655
Query: 316 RHEEPKLINEDYEQGTYIYFDNEKWSQRKKEGFTFEYKYLEDRDLN 361
RHEEPK I +DYEQGTY+YFD EKWSQRKKE FTFEYK+LED++ +
Sbjct: 656 RHEEPKQITDDYEQGTYVYFDFEKWSQRKKESFTFEYKFLEDKEFD 701
Score = 39 (18.8 bits), Expect = 1.3e-44, Sum P(2) = 1.3e-44
Identities = 16/49 (32%), Positives = 20/49 (40%)
Query: 1 LDELELAGVVPSSATTDSNGTPNS--------LASTSPHSPTLGLNHSA 41
+D E V S T+ NG P S L+ SPH+ T L A
Sbjct: 274 IDTAESGAVSGSRHTSGENGQPPSPAGRRIVPLSMPSPHAVTPELKRLA 322
>UNIPROTKB|H0Y5X7 [details] [associations]
symbol:CNOT3 "CCR4-NOT transcription complex subunit 3"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634
GO:GO:0006355 HGNC:HGNC:7879 EMBL:AC012314
ProteinModelPortal:H0Y5X7 Ensembl:ENST00000457463 Uniprot:H0Y5X7
Length = 288
Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
Identities = 79/133 (59%), Positives = 97/133 (72%)
Query: 197 SEAHIPYMLGVVPLGPQPLHKAHHYQYQLVDQAYHHLPTPADSERLRHYITRTPCTTPSY 256
SE +IP LGV PLGP PL K YQ + + A+HH+P P+DSER+R Y+ R PC TP Y
Sbjct: 121 SEVNIPLSLGVCPLGPVPLTKEQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPY 180
Query: 257 YPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTXXXXXXXXXXXXXSWRFHTKYMMWFQR 316
+ Q+P PHSDT++F+QRLSTE+LFFIFYY+EGT SWRFHTKYMMWFQR
Sbjct: 181 HHQMPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQR 240
Query: 317 HEEPKLINEDYEQ 329
HEEPK I +++EQ
Sbjct: 241 HEEPKTITDEFEQ 253
>POMBASE|SPAC1B3.05 [details] [associations]
symbol:not3 "CCR4-Not complex subunit Not3/5 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0006402 "mRNA
catabolic process" evidence=IC] [GO:0030015 "CCR4-NOT core complex"
evidence=ISO] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
PomBase:SPAC1B3.05 GO:GO:0005829 GO:GO:0005634 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0006357 GO:GO:0006351 GO:GO:0000289
GO:GO:0030015 eggNOG:COG5665 HOGENOM:HOG000184850 PIR:T38023
RefSeq:NP_594789.2 STRING:O13870 EnsemblFungi:SPAC1B3.05.1
GeneID:2542126 OrthoDB:EOG4NW2V3 NextBio:20803198 Uniprot:O13870
Length = 640
Score = 324 (119.1 bits), Expect = 2.4e-30, Sum P(2) = 2.4e-30
Identities = 58/129 (44%), Positives = 79/129 (61%)
Query: 232 HLPTPADSERLRHYITRTPCTTPSYYPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTXX 291
++P D+ + ++YI + P P YYPQ PLP D+ + + + ++LF++FYY GT
Sbjct: 508 YVPDATDAAKPQYYIPKDPYPVPHYYPQQPLPLFDSSEMTELVDPDTLFYMFYYRPGTYQ 567
Query: 292 XXXXXXXXXXXSWRFHTKYMMWFQRHEEPKLINEDYEQGTYIYFDNE-KWSQRKKEGFTF 350
SWRFH KY WFQRHEEPK+I +++E G+Y YFD E W QRKK F F
Sbjct: 568 QYIAGQELKKQSWRFHKKYTTWFQRHEEPKMITDEFESGSYRYFDFEGDWVQRKKADFRF 627
Query: 351 EYKYLEDRD 359
Y+YLED D
Sbjct: 628 TYQYLEDDD 636
Score = 41 (19.5 bits), Expect = 2.4e-30, Sum P(2) = 2.4e-30
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 2 DELELAGVVPSSATTDSNGTPNSLASTSPHSPTLGLNHSAVTE 44
DEL L +SA+ D+ + S S+S HSP+ + S+ +E
Sbjct: 226 DELNLD---EASASYDAERSGRS--SSSSHSPSPSASSSSSSE 263
>ZFIN|ZDB-GENE-030131-5838 [details] [associations]
symbol:cnot3b "CCR4-NOT transcription complex,
subunit 3b" species:7955 "Danio rerio" [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
ZFIN:ZDB-GENE-030131-5838 GO:GO:0005634 GO:GO:0006355
HOVERGEN:HBG051042 KO:K12580 EMBL:BC045499 IPI:IPI00859465
RefSeq:NP_956134.1 UniGene:Dr.6354 ProteinModelPortal:Q7ZVL4
STRING:Q7ZVL4 PRIDE:Q7ZVL4 GeneID:327627 KEGG:dre:327627 CTD:327627
InParanoid:Q7ZVL4 NextBio:20810115 ArrayExpress:Q7ZVL4 Bgee:Q7ZVL4
Uniprot:Q7ZVL4
Length = 908
Score = 325 (119.5 bits), Expect = 6.2e-30, Sum P(2) = 6.2e-30
Identities = 60/115 (52%), Positives = 77/115 (66%)
Query: 194 LAPSEAHIPYMLGVVPLGPQPLHKAHHYQYQLVDQAYHHLPTPADSERLRHYITRTPCTT 253
L+ SE IP LGV PLGP PL K YQ + + A+ H+P P+DSER+R Y+ R PC T
Sbjct: 718 LSLSEVSIPPSLGVCPLGPVPLSKDQLYQQAMQESAWAHMPHPSDSERIRQYLMRNPCPT 777
Query: 254 PSYYPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTXXXXXXXXXXXXXSWRFHT 308
++ Q+P PHSD+++F+QRLSTE+LFFIFYY+EGT SWRFHT
Sbjct: 778 LPFHHQMPPPHSDSVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHT 832
Score = 43 (20.2 bits), Expect = 6.2e-30, Sum P(2) = 6.2e-30
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 12 SSATTDSNGT--PNSLASTSPHSPTLG 36
S++T+ SN P S +++ P++ TLG
Sbjct: 383 SNSTSASNSILLPTSASTSPPNTSTLG 409
Score = 40 (19.1 bits), Expect = 1.3e-29, Sum P(2) = 1.3e-29
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 18 SNGTPNSLASTSPHSPT 34
S+ TP S S+SP P+
Sbjct: 255 SSSTPTSTTSSSPIPPS 271
Score = 38 (18.4 bits), Expect = 2.1e-29, Sum P(2) = 2.1e-29
Identities = 10/18 (55%), Positives = 10/18 (55%)
Query: 12 SSATTDSNGTPNSLASTS 29
SS S GT SL STS
Sbjct: 494 SSGVVTSLGTNGSLGSTS 511
>ASPGD|ASPL0000074489 [details] [associations]
symbol:AN4585 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
GO:GO:0005634 GO:GO:0006355 EMBL:BN001303 HOGENOM:HOG000184850
OMA:ESIYHLP EnsemblFungi:CADANIAT00005852 Uniprot:C8V7V5
Length = 616
Score = 337 (123.7 bits), Expect = 6.8e-30, P = 6.8e-30
Identities = 63/137 (45%), Positives = 83/137 (60%)
Query: 224 QLVDQAYHHLPTPADSERLRHYITRTPCTTPSYYPQVPLPHSDTLDFFQ--RLSTESLFF 281
+L+ + + P P DSE+ RHY + P TP YYPQ PL D ++ R+ T++LF+
Sbjct: 478 RLLTASAANCPEPGDSEKPRHYKPQNPYNTPLYYPQEPLAILDDPRLYETGRIDTDTLFY 537
Query: 282 IFYYMEGTXXXXXXXXXXXXXSWRFHTKYMMWFQRHEEPKLINEDYEQGTYIYFDNEK-W 340
+FYY +G+ SWRFH +Y WFQRHEEPK I E++EQGTY +FD E W
Sbjct: 538 LFYYRQGSYQQYLAAKALKGQSWRFHKQYQTWFQRHEEPKTITEEFEQGTYRFFDYESTW 597
Query: 341 SQRKKEGFTFEYKYLED 357
R+K F F YKYLED
Sbjct: 598 MNRRKADFKFIYKYLED 614
>DICTYBASE|DDB_G0272056 [details] [associations]
symbol:DDB_G0272056 "putative CCR4-NOT complex
subunit 3" species:44689 "Dictyostelium discoideum" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR007207
InterPro:IPR007282 InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153
PIRSF:PIRSF005290 dictyBase:DDB_G0272056 GO:GO:0005634
GO:GO:0006355 EMBL:AAFI02000007 eggNOG:COG5665 KO:K12580
RefSeq:XP_645358.1 ProteinModelPortal:Q55AA8
EnsemblProtists:DDB0219997 GeneID:8618247 KEGG:ddi:DDB_G0272056
InParanoid:Q55AA8 OMA:GHIKSEE Uniprot:Q55AA8
Length = 866
Score = 339 (124.4 bits), Expect = 1.1e-29, P = 1.1e-29
Identities = 60/134 (44%), Positives = 85/134 (63%)
Query: 225 LVDQAYHHLPTPADSERLRHYITRTPCTTPSYYPQVPLPHSDTLDFFQRLSTESLFFIFY 284
++D ++ +LP D ER+ +I R P P YYPQ LP ++ + F++ ++LFFIFY
Sbjct: 733 MMDISFKNLPDFKDYERIPTFIPRNPKPVPQYYPQSTLPLFESPNVFEKFDIDTLFFIFY 792
Query: 285 YMEGTXXXXXXXXXXXXXSWRFHTKYMMWFQRHEEPKLINEDYEQGTYIYFDNEK-WSQR 343
+ +GT WR+H KY+ WF+RHEEPK I ++EQGTY+YFD E W QR
Sbjct: 793 FKQGTYQQYQAAKELKKQGWRYHKKYLTWFRRHEEPKEITNEFEQGTYVYFDYETGWCQR 852
Query: 344 KKEGFTFEYKYLED 357
KK FTFEY++LE+
Sbjct: 853 KKTEFTFEYRFLEE 866
>UNIPROTKB|F1RNH3 [details] [associations]
symbol:CNOT3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005634
GO:GO:0006355 GO:GO:0000932 CTD:4849 KO:K12580 OMA:IFYYLEP
GeneTree:ENSGT00390000014743 EMBL:FP476135 RefSeq:XP_003356092.1
Ensembl:ENSSSCT00000003625 GeneID:100520963 KEGG:ssc:100520963
Uniprot:F1RNH3
Length = 719
Score = 313 (115.2 bits), Expect = 9.3e-29, Sum P(2) = 9.3e-29
Identities = 55/91 (60%), Positives = 70/91 (76%)
Query: 197 SEAHIPYMLGVVPLGPQPLHKAHHYQYQLVDQAYHHLPTPADSERLRHYITRTPCTTPSY 256
SE +IP LGV PLGP PL K YQ + + A+HH+P P+DSER+R Y+ R PC TP Y
Sbjct: 590 SEVNIPLSLGVCPLGPVPLTKEQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPY 649
Query: 257 YPQVPLPHSDTLDFFQRLSTESLFFIFYYME 287
+ Q+P PHSDT++F+QRLSTE+LFFIFYY+E
Sbjct: 650 HHQMPPPHSDTVEFYQRLSTETLFFIFYYLE 680
Score = 40 (19.1 bits), Expect = 9.3e-29, Sum P(2) = 9.3e-29
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 18 SNGTPNSLASTSPHSPT 34
S+ TP S S+SP P+
Sbjct: 257 SSSTPTSTTSSSPIPPS 273
>TAIR|locus:2172389 [details] [associations]
symbol:AT5G18230 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005634
EMBL:CP002688 GO:GO:0006355 KO:K12580 OMA:ESIYHLP IPI:IPI00939040
RefSeq:NP_001154716.1 UniGene:At.7555 ProteinModelPortal:F4JWJ7
PRIDE:F4JWJ7 EnsemblPlants:AT5G18230.2 GeneID:831941
KEGG:ath:AT5G18230 Uniprot:F4JWJ7
Length = 845
Score = 320 (117.7 bits), Expect = 1.1e-27, P = 1.1e-27
Identities = 67/169 (39%), Positives = 92/169 (54%)
Query: 205 LGVV--PLGPQPLHKAHHYQYQLVDQAYHHLPTPADSERLRHYITRTPCTTPSYYPQVPL 262
LG + P P+H H Q+++ A++ P P+DSER R Y R P TP +PQ
Sbjct: 674 LGAIGDPSAVGPMHDQMH-NLQMLEAAFYKRPQPSDSERPRPYSPRNPAITPQTFPQTQA 732
Query: 263 PHSDTLDFFQRLS-----TESLFFIFYYMEGTXXXXXXXXXXXXXSWRFHTKYMMWFQRH 317
P + ++RL T++LFF FYY + + SWR+H K+ WFQRH
Sbjct: 733 PIINNPLLWERLGSDAYGTDTLFFAFYYQQNSYQQYLAAKELKKQSWRYHRKFNTWFQRH 792
Query: 318 EEPKLINEDYEQGTYIYFD-------NEK--WSQRKKEGFTFEYKYLED 357
+EPK+ ++YEQG Y+YFD N++ W QR K FTFEY YLED
Sbjct: 793 KEPKIATDEYEQGAYVYFDFQTPKDENQEGGWCQRIKNEFTFEYSYLED 841
>UNIPROTKB|H7C5J4 [details] [associations]
symbol:CNOT3 "CCR4-NOT transcription complex subunit 3"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634
GO:GO:0006355 HGNC:HGNC:7879 EMBL:AC012314
ProteinModelPortal:H7C5J4 Ensembl:ENST00000471126 Bgee:H7C5J4
Uniprot:H7C5J4
Length = 88
Score = 164 (62.8 bits), Expect = 8.4e-25, Sum P(2) = 8.4e-25
Identities = 29/32 (90%), Positives = 30/32 (93%)
Query: 329 QGTYIYFDNEKWSQRKKEGFTFEYKYLEDRDL 360
QGTYIYFD EKW QRKKEGFTFEY+YLEDRDL
Sbjct: 56 QGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDL 87
Score = 138 (53.6 bits), Expect = 8.4e-25, Sum P(2) = 8.4e-25
Identities = 22/27 (81%), Positives = 25/27 (92%)
Query: 303 SWRFHTKYMMWFQRHEEPKLINEDYEQ 329
SWRFHTKYMMWFQRHEEPK I +++EQ
Sbjct: 13 SWRFHTKYMMWFQRHEEPKTITDEFEQ 39
>CGD|CAL0005191 [details] [associations]
symbol:orf19.6075 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0030015 "CCR4-NOT core complex" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IEA] [GO:0031087 "deadenylation-independent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0051726 "regulation of cell
cycle" evidence=IEA] [GO:0000749 "response to pheromone involved in
conjugation with cellular fusion" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 CGD:CAL0005191 GO:GO:0005634
GO:GO:0006355 EMBL:AACQ01000036 EMBL:AACQ01000035 eggNOG:COG5601
HOGENOM:HOG000246523 KO:K12605 RefSeq:XP_718935.1
RefSeq:XP_719037.1 STRING:Q5AB95 GeneID:3639296 GeneID:3639453
KEGG:cal:CaO19.13496 KEGG:cal:CaO19.6075 Uniprot:Q5AB95
Length = 182
Score = 145 (56.1 bits), Expect = 8.1e-10, P = 8.1e-10
Identities = 29/87 (33%), Positives = 41/87 (47%)
Query: 272 QRLSTESLFFIFYYMEGTXXXXXXXXXXXXXSWRFHTKYMMWFQRHE--EPKLINEDYEQ 329
Q + E+LF+IFY +WR+H +W + EP LIN D E+
Sbjct: 96 QNFTDETLFYIFYMKPRDTLQEYAARELVARNWRYHKGIQVWLTKDSNVEPVLINPDVEK 155
Query: 330 GTYIYFDNEKWSQRKKEGFTFEYKYLE 356
G YI+FD W + KKE F Y ++
Sbjct: 156 GVYIFFDPHNWEKIKKE-FVLHYSLVQ 181
>UNIPROTKB|Q52JK6 [details] [associations]
symbol:VIP2 "Probable NOT transcription complex subunit
VIP2" species:4100 "Nicotiana benthamiana" [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0015074 "DNA integration" evidence=IMP]
InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634 GO:GO:0006355
GO:GO:0006351 GO:GO:0015074 EMBL:DQ000202 Uniprot:Q52JK6
Length = 603
Score = 151 (58.2 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 33/110 (30%), Positives = 50/110 (45%)
Query: 252 TTPS-YYPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTXXXXXXXXXXXXXSWRFHTKY 310
T P YY + P P + +F + ++LF+IFY M W +H ++
Sbjct: 490 TVPQCYYAKQPPPLNQA--YFSKFQLDTLFYIFYSMPKDEAQLYAANELYNRGWFYHREH 547
Query: 311 MMWFQR--HEEPKLINEDYEQGTYIYFDNEKWSQRKKEGFTFEYKYLEDR 358
+WF R + EP + YE+G+YI FD W K+ F + LE R
Sbjct: 548 RLWFMRVANMEPLVKTNAYERGSYICFDPNTWETIHKDNFVLHCEMLEKR 597
>TAIR|locus:2174259 [details] [associations]
symbol:VIP2 "VIRE2 interacting protein 2" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;IEP] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0015074 "DNA integration" evidence=IMP]
[GO:0000911 "cytokinesis by cell plate formation" evidence=RCA]
InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006355 GO:GO:0006351 GO:GO:0015074
eggNOG:COG5601 KO:K12605 EMBL:AB006705 EMBL:AK117230 EMBL:AF295433
IPI:IPI00536853 RefSeq:NP_568912.2 UniGene:At.24144 PaxDb:Q9FPW4
PRIDE:Q9FPW4 EnsemblPlants:AT5G59710.1 GeneID:836092
KEGG:ath:AT5G59710 TAIR:At5g59710 HOGENOM:HOG000005739
InParanoid:Q9FPW4 OMA:PEYLINM PhylomeDB:Q9FPW4
Genevestigator:Q9FPW4 Uniprot:Q9FPW4
Length = 614
Score = 148 (57.2 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 36/108 (33%), Positives = 49/108 (45%)
Query: 252 TTPS-YYPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTXXXXXXXXXXXXXSWRFHTKY 310
T P+ YY P P T F+R S E LF+ FY M W +H +
Sbjct: 503 TVPNCYYATEPPPL--TRASFKRFSYELLFYTFYSMPKDEAQLYAADELYERGWFYHKEL 560
Query: 311 MMWFQRHEEPKLINEDYEQGTYIYFDNEKWSQRKKEGFTFEYKYLEDR 358
+WF R EP + YE+GTY Y D + +KE F +Y+ +E R
Sbjct: 561 RVWFFRVGEPLVRAATYERGTYEYLDPNSFKTVRKEHFVIKYELMEKR 608
Score = 40 (19.1 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 103 LPQSQQSHNSLMSLNH------GTSGATHLRVT 129
L Q +Q H++ MS+ H G SG +L T
Sbjct: 333 LHQKEQLHDNAMSMMHSQNFSMGRSGGFNLGAT 365
>TAIR|locus:505006107 [details] [associations]
symbol:NOT2a "Negative on TATA less2a" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM]
InterPro:IPR007282 Pfam:PF04153 EMBL:CP002684 GO:GO:0005634
GO:GO:0006355 EMBL:AC007583 eggNOG:COG5601 KO:K12605
HOGENOM:HOG000005739 IPI:IPI00852321 RefSeq:NP_001077478.1
UniGene:At.42289 PaxDb:A8MR45 PRIDE:A8MR45
EnsemblPlants:AT1G07705.2 GeneID:837284 KEGG:ath:AT1G07705
TAIR:At1g07705 InParanoid:A8MR45 OMA:RMNDADL PhylomeDB:A8MR45
ProtClustDB:CLSN2693279 Genevestigator:A8MR45 Uniprot:A8MR45
Length = 614
Score = 146 (56.5 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 33/103 (32%), Positives = 48/103 (46%)
Query: 256 YYPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTXXXXXXXXXXXXXSWRFHTKYMMWFQ 315
YY + P P L F +L E+LF++FY M W +H ++ +WF
Sbjct: 505 YYAKNPPPLHQGL--FAKLLVETLFYVFYSMPKDEAQLYAANELYNRGWFYHKEHRLWFI 562
Query: 316 RHEEPKLINEDYEQGTYIYFDNEKWSQRKKEGFTFEYKYLEDR 358
R EP + YE+G+Y FD + +KE F Y+ LE R
Sbjct: 563 RIGEPLVKTNAYERGSYHCFDPNSFEIVQKENFVLYYEMLEKR 605
>ZFIN|ZDB-GENE-070410-70 [details] [associations]
symbol:zgc:162316 "zgc:162316" species:7955 "Danio
rerio" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 ZFIN:ZDB-GENE-070410-70
GO:GO:0005634 GO:GO:0006355 eggNOG:COG5601 HOGENOM:HOG000246523
HOVERGEN:HBG051041 KO:K12605 OMA:TQDFSIH OrthoDB:EOG44MXRV
GeneTree:ENSGT00390000001285 EMBL:CR376836 EMBL:CR382363
EMBL:BC134959 IPI:IPI00799285 RefSeq:NP_001082993.1
UniGene:Dr.78739 STRING:A4QN63 Ensembl:ENSDART00000088383
GeneID:100037372 KEGG:dre:100037372 InParanoid:A4QN63
NextBio:20788534 Uniprot:A4QN63
Length = 520
Score = 134 (52.2 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 31/85 (36%), Positives = 38/85 (44%)
Query: 277 ESLFFIFYYMEG-TXXXXXXXXXXXXXSWRFHTKYMMWFQRHE--EPKLINEDYEQGTYI 333
E L F YYM G WR+H + +W R EP L YE+GTY
Sbjct: 421 EDLLFYLYYMNGGDLLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTLKTNTYERGTYY 480
Query: 334 YFDNEKWSQRKKEGFTFEYKYLEDR 358
+FD W + KE F EY LE+R
Sbjct: 481 FFDCHNWRKVAKE-FHLEYDKLEER 504
Score = 44 (20.5 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 13 SATTDSNGTPNSLASTSPHSPTLGL 37
S +T + G P T+P SP G+
Sbjct: 89 SHSTPTTGVPTMSLHTTPPSPNRGI 113
>POMBASE|SPCC4G3.15c [details] [associations]
symbol:not2 "CCR4-Not complex subunit Not2 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006354 "DNA-dependent transcription, elongation"
evidence=IC] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0030015 "CCR4-NOT core
complex" evidence=ISO] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISO] InterPro:IPR007282 Pfam:PF04153 PomBase:SPCC4G3.15c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0006357 GO:GO:0000289 GO:GO:0030015 GO:GO:0006354
eggNOG:COG5601 HOGENOM:HOG000246523 PIR:T41361 RefSeq:NP_587823.2
STRING:P87240 EnsemblFungi:SPCC4G3.15c.1 GeneID:2538778
OrthoDB:EOG4TB7MJ NextBio:20799960 Uniprot:P87240
Length = 306
Score = 128 (50.1 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 34/107 (31%), Positives = 49/107 (45%)
Query: 254 PSYYPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTXXXXXXXXXXXXXSWRFHTKYMMW 313
P+ Y V P + + FQ S E+LF+IFY M +WRFH + +W
Sbjct: 196 PACYKNVNPPPAIS-KIFQ-FSDETLFYIFYTMPRDVMQEAAAQELTNRNWRFHKELRVW 253
Query: 314 FQRHEEPKLINE--DYEQGTYIYFDNEKWSQRKKEGFTFEYKYLEDR 358
K + +E+G Y++FD W + KK+ F Y LEDR
Sbjct: 254 LTPVPGMKPLQRTPQFERGYYMFFDPIHWKRIKKD-FLLMYAALEDR 299
>UNIPROTKB|F1MID5 [details] [associations]
symbol:CNOT2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634 GO:GO:0006355
GeneTree:ENSGT00390000001285 EMBL:DAAA02013212 EMBL:DAAA02013213
EMBL:DAAA02013214 EMBL:DAAA02013215 IPI:IPI00905002
UniGene:Bt.30639 Ensembl:ENSBTAT00000057053 ArrayExpress:F1MID5
Uniprot:F1MID5
Length = 403
Score = 129 (50.5 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 30/85 (35%), Positives = 38/85 (44%)
Query: 277 ESLFFIFYYMEG-TXXXXXXXXXXXXXSWRFHTKYMMWFQRHE--EPKLINEDYEQGTYI 333
E L F YYM G WR+H + +W R EP + YE+GTY
Sbjct: 304 EDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYY 363
Query: 334 YFDNEKWSQRKKEGFTFEYKYLEDR 358
+FD W + KE F EY LE+R
Sbjct: 364 FFDCLNWRKVAKE-FHLEYDKLEER 387
>UNIPROTKB|F1M3V0 [details] [associations]
symbol:Cnot2 "Protein Cnot2" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 RGD:1311672 GO:GO:0005634
GO:GO:0006355 IPI:IPI00949675 Ensembl:ENSRNOT00000064732
ArrayExpress:F1M3V0 Uniprot:F1M3V0
Length = 493
Score = 129 (50.5 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 30/85 (35%), Positives = 38/85 (44%)
Query: 277 ESLFFIFYYMEG-TXXXXXXXXXXXXXSWRFHTKYMMWFQRHE--EPKLINEDYEQGTYI 333
E L F YYM G WR+H + +W R EP + YE+GTY
Sbjct: 394 EDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYY 453
Query: 334 YFDNEKWSQRKKEGFTFEYKYLEDR 358
+FD W + KE F EY LE+R
Sbjct: 454 FFDCLNWRKVAKE-FHLEYDKLEER 477
>UNIPROTKB|Q5ZKI3 [details] [associations]
symbol:CNOT2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA] InterPro:IPR007282
Pfam:PF04153 GO:GO:0005634 GO:GO:0006355 eggNOG:COG5601
HOGENOM:HOG000246523 HOVERGEN:HBG051041 KO:K12605 OMA:TQDFSIH
OrthoDB:EOG44MXRV GeneTree:ENSGT00390000001285 EMBL:AADN02009856
EMBL:AJ720101 IPI:IPI00592451 RefSeq:NP_001012826.1
UniGene:Gga.50456 UniGene:Gga.9400 STRING:Q5ZKI3
Ensembl:ENSGALT00000016314 GeneID:417851 KEGG:gga:417851
InParanoid:Q5ZKI3 NextBio:20821090 Uniprot:Q5ZKI3
Length = 520
Score = 129 (50.5 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 30/85 (35%), Positives = 38/85 (44%)
Query: 277 ESLFFIFYYMEG-TXXXXXXXXXXXXXSWRFHTKYMMWFQRHE--EPKLINEDYEQGTYI 333
E L F YYM G WR+H + +W R EP + YE+GTY
Sbjct: 421 EDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYY 480
Query: 334 YFDNEKWSQRKKEGFTFEYKYLEDR 358
+FD W + KE F EY LE+R
Sbjct: 481 FFDCLNWRKVAKE-FHLEYDKLEER 504
>UNIPROTKB|F8VV52 [details] [associations]
symbol:CNOT2 "CCR4-NOT transcription complex subunit 2"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634
GO:GO:0006355 IPI:IPI00017733 HGNC:HGNC:7878 ChiTaRS:CNOT2
EMBL:AC025569 EMBL:AC092881 PRIDE:F8VV52 Ensembl:ENST00000548159
ArrayExpress:F8VV52 Bgee:F8VV52 Uniprot:F8VV52
Length = 531
Score = 129 (50.5 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 30/85 (35%), Positives = 38/85 (44%)
Query: 277 ESLFFIFYYMEG-TXXXXXXXXXXXXXSWRFHTKYMMWFQRHE--EPKLINEDYEQGTYI 333
E L F YYM G WR+H + +W R EP + YE+GTY
Sbjct: 432 EDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYY 491
Query: 334 YFDNEKWSQRKKEGFTFEYKYLEDR 358
+FD W + KE F EY LE+R
Sbjct: 492 FFDCLNWRKVAKE-FHLEYDKLEER 515
>UNIPROTKB|F1LY92 [details] [associations]
symbol:Cnot2 "Protein Cnot2" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 RGD:1311672 GO:GO:0005634
GO:GO:0006355 IPI:IPI00366212 Ensembl:ENSRNOT00000006779
ArrayExpress:F1LY92 Uniprot:F1LY92
Length = 531
Score = 129 (50.5 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 30/85 (35%), Positives = 38/85 (44%)
Query: 277 ESLFFIFYYMEG-TXXXXXXXXXXXXXSWRFHTKYMMWFQRHE--EPKLINEDYEQGTYI 333
E L F YYM G WR+H + +W R EP + YE+GTY
Sbjct: 432 EDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYY 491
Query: 334 YFDNEKWSQRKKEGFTFEYKYLEDR 358
+FD W + KE F EY LE+R
Sbjct: 492 FFDCLNWRKVAKE-FHLEYDKLEER 515
>UNIPROTKB|E1BCE7 [details] [associations]
symbol:CNOT2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634 GO:GO:0006355
OMA:TQDFSIH GeneTree:ENSGT00390000001285 EMBL:DAAA02013212
EMBL:DAAA02013213 EMBL:DAAA02013214 EMBL:DAAA02013215
IPI:IPI00692269 Ensembl:ENSBTAT00000004880 ArrayExpress:E1BCE7
Uniprot:E1BCE7
Length = 540
Score = 129 (50.5 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 30/85 (35%), Positives = 38/85 (44%)
Query: 277 ESLFFIFYYMEG-TXXXXXXXXXXXXXSWRFHTKYMMWFQRHE--EPKLINEDYEQGTYI 333
E L F YYM G WR+H + +W R EP + YE+GTY
Sbjct: 441 EDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYY 500
Query: 334 YFDNEKWSQRKKEGFTFEYKYLEDR 358
+FD W + KE F EY LE+R
Sbjct: 501 FFDCLNWRKVAKE-FHLEYDKLEER 524
>UNIPROTKB|E2QSF5 [details] [associations]
symbol:CNOT2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634 GO:GO:0006355
CTD:4848 KO:K12605 OMA:TQDFSIH GeneTree:ENSGT00390000001285
EMBL:AAEX03007054 EMBL:AAEX03007055 RefSeq:XP_850576.1
Ensembl:ENSCAFT00000000701 GeneID:474446 KEGG:cfa:474446
NextBio:20850458 Uniprot:E2QSF5
Length = 540
Score = 129 (50.5 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 30/85 (35%), Positives = 38/85 (44%)
Query: 277 ESLFFIFYYMEG-TXXXXXXXXXXXXXSWRFHTKYMMWFQRHE--EPKLINEDYEQGTYI 333
E L F YYM G WR+H + +W R EP + YE+GTY
Sbjct: 441 EDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYY 500
Query: 334 YFDNEKWSQRKKEGFTFEYKYLEDR 358
+FD W + KE F EY LE+R
Sbjct: 501 FFDCLNWRKVAKE-FHLEYDKLEER 524
>UNIPROTKB|Q9NZN8 [details] [associations]
symbol:CNOT2 "CCR4-NOT transcription complex subunit 2"
species:9606 "Homo sapiens" [GO:0001104 "RNA polymerase II
transcription cofactor activity" evidence=TAS] [GO:0005634
"nucleus" evidence=NAS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=NAS] [GO:0030014
"CCR4-NOT complex" evidence=IDA] [GO:0010606 "positive regulation
of cytoplasmic mRNA processing body assembly" evidence=IMP]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0001226 "RNA polymerase
II transcription corepressor binding" evidence=IDA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:2000036 "regulation of stem cell
maintenance" evidence=IMP] [GO:0033147 "negative regulation of
intracellular estrogen receptor signaling pathway" evidence=IMP]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR007282
Pfam:PF04153 GO:GO:0005829 GO:GO:0005634 GO:GO:0000289
GO:GO:0001104 EMBL:AF180473 EMBL:AF113226 EMBL:AF161480
EMBL:AK000662 EMBL:AL137674 EMBL:BX641116 EMBL:BC002597
EMBL:BC011826 EMBL:AF044215 IPI:IPI00005011 IPI:IPI00017733
IPI:IPI00410621 IPI:IPI00410622 IPI:IPI00410623 PIR:T46494
RefSeq:NP_001186231.1 RefSeq:NP_001186232.1 RefSeq:NP_055330.1
UniGene:Hs.133350 UniGene:Hs.730666 ProteinModelPortal:Q9NZN8
DIP:DIP-42656N IntAct:Q9NZN8 MINT:MINT-1438957 STRING:Q9NZN8
PhosphoSite:Q9NZN8 DMDM:46396017 PaxDb:Q9NZN8 PRIDE:Q9NZN8
DNASU:4848 Ensembl:ENST00000229195 Ensembl:ENST00000418359
Ensembl:ENST00000551043 Ensembl:ENST00000551483 GeneID:4848
KEGG:hsa:4848 UCSC:uc001svv.3 UCSC:uc001svw.1 CTD:4848
GeneCards:GC12P070636 HGNC:HGNC:7878 MIM:604909 neXtProt:NX_Q9NZN8
PharmGKB:PA26673 eggNOG:COG5601 HOGENOM:HOG000246523
HOVERGEN:HBG051041 InParanoid:Q9NZN8 KO:K12605 OMA:TQDFSIH
OrthoDB:EOG44MXRV PhylomeDB:Q9NZN8 ChiTaRS:CNOT2 GenomeRNAi:4848
NextBio:18670 ArrayExpress:Q9NZN8 Bgee:Q9NZN8 CleanEx:HS_CNOT2
Genevestigator:Q9NZN8 GermOnline:ENSG00000111596 Uniprot:Q9NZN8
Length = 540
Score = 129 (50.5 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 30/85 (35%), Positives = 38/85 (44%)
Query: 277 ESLFFIFYYMEG-TXXXXXXXXXXXXXSWRFHTKYMMWFQRHE--EPKLINEDYEQGTYI 333
E L F YYM G WR+H + +W R EP + YE+GTY
Sbjct: 441 EDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYY 500
Query: 334 YFDNEKWSQRKKEGFTFEYKYLEDR 358
+FD W + KE F EY LE+R
Sbjct: 501 FFDCLNWRKVAKE-FHLEYDKLEER 524
>MGI|MGI:1919318 [details] [associations]
symbol:Cnot2 "CCR4-NOT transcription complex, subunit 2"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0001226 "RNA polymerase II transcription corepressor binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0010606 "positive
regulation of cytoplasmic mRNA processing body assembly"
evidence=ISO] [GO:0030014 "CCR4-NOT complex" evidence=ISO]
[GO:0033147 "negative regulation of intracellular estrogen receptor
signaling pathway" evidence=ISO] [GO:2000036 "regulation of stem
cell maintenance" evidence=ISO] InterPro:IPR007282 Pfam:PF04153
MGI:MGI:1919318 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0006351 CTD:4848 eggNOG:COG5601 HOGENOM:HOG000246523
HOVERGEN:HBG051041 KO:K12605 OMA:TQDFSIH OrthoDB:EOG44MXRV
ChiTaRS:CNOT2 EMBL:AK011231 EMBL:AK078121 EMBL:AK149767
EMBL:BC043133 EMBL:BC063105 EMBL:BC065171 IPI:IPI00132821
IPI:IPI00410747 IPI:IPI00410748 RefSeq:NP_001032935.2
RefSeq:NP_001032936.2 RefSeq:NP_001032937.1 RefSeq:NP_082358.2
UniGene:Mm.351553 ProteinModelPortal:Q8C5L3 STRING:Q8C5L3
PhosphoSite:Q8C5L3 PaxDb:Q8C5L3 PRIDE:Q8C5L3
Ensembl:ENSMUST00000105265 Ensembl:ENSMUST00000105267
Ensembl:ENSMUST00000169921 GeneID:72068 KEGG:mmu:72068
UCSC:uc007hca.2 UCSC:uc007hcb.2 UCSC:uc007hcd.2
GeneTree:ENSGT00390000001285 InParanoid:Q8C5L3 NextBio:335352
Bgee:Q8C5L3 CleanEx:MM_CNOT2 Genevestigator:Q8C5L3
GermOnline:ENSMUSG00000020166 Uniprot:Q8C5L3
Length = 540
Score = 129 (50.5 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 30/85 (35%), Positives = 38/85 (44%)
Query: 277 ESLFFIFYYMEG-TXXXXXXXXXXXXXSWRFHTKYMMWFQRHE--EPKLINEDYEQGTYI 333
E L F YYM G WR+H + +W R EP + YE+GTY
Sbjct: 441 EDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYY 500
Query: 334 YFDNEKWSQRKKEGFTFEYKYLEDR 358
+FD W + KE F EY LE+R
Sbjct: 501 FFDCLNWRKVAKE-FHLEYDKLEER 524
>UNIPROTKB|F1SH40 [details] [associations]
symbol:CNOT2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634 GO:GO:0006355
OMA:TQDFSIH GeneTree:ENSGT00390000001285 EMBL:CU467026
Ensembl:ENSSSCT00000000541 Uniprot:F1SH40
Length = 541
Score = 129 (50.5 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 30/85 (35%), Positives = 38/85 (44%)
Query: 277 ESLFFIFYYMEG-TXXXXXXXXXXXXXSWRFHTKYMMWFQRHE--EPKLINEDYEQGTYI 333
E L F YYM G WR+H + +W R EP + YE+GTY
Sbjct: 442 EDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYY 501
Query: 334 YFDNEKWSQRKKEGFTFEYKYLEDR 358
+FD W + KE F EY LE+R
Sbjct: 502 FFDCLNWRKVAKE-FHLEYDKLEER 525
>UNIPROTKB|F1LUT7 [details] [associations]
symbol:Cnot2 "Protein Cnot2" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 RGD:1311672 GO:GO:0005634
GO:GO:0006355 IPI:IPI00734620 Ensembl:ENSRNOT00000058355
ArrayExpress:F1LUT7 Uniprot:F1LUT7
Length = 549
Score = 129 (50.5 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 30/85 (35%), Positives = 38/85 (44%)
Query: 277 ESLFFIFYYMEG-TXXXXXXXXXXXXXSWRFHTKYMMWFQRHE--EPKLINEDYEQGTYI 333
E L F YYM G WR+H + +W R EP + YE+GTY
Sbjct: 450 EDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYY 509
Query: 334 YFDNEKWSQRKKEGFTFEYKYLEDR 358
+FD W + KE F EY LE+R
Sbjct: 510 FFDCLNWRKVAKE-FHLEYDKLEER 533
>UNIPROTKB|H0YHT6 [details] [associations]
symbol:CNOT2 "CCR4-NOT transcription complex subunit 2"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634
GO:GO:0006355 HGNC:HGNC:7878 ChiTaRS:CNOT2 EMBL:AC025569
EMBL:AC092881 Ensembl:ENST00000551710 Bgee:H0YHT6 Uniprot:H0YHT6
Length = 104
Score = 105 (42.0 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 24/75 (32%), Positives = 31/75 (41%)
Query: 277 ESLFFIFYYMEG-TXXXXXXXXXXXXXSWRFHTKYMMWFQRHE--EPKLINEDYEQGTYI 333
E L F YYM G WR+H + +W R EP + YE+GTY
Sbjct: 24 EDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYY 83
Query: 334 YFDNEKWSQRKKEGF 348
+FD W + K F
Sbjct: 84 FFDCLNWRKVAKVYF 98
>SGD|S000002324 [details] [associations]
symbol:CDC36 "Component of the CCR4-NOT transcriptional
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0051726 "regulation of cell cycle"
evidence=IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0031087 "deadenylation-independent decapping
of nuclear-transcribed mRNA" evidence=IMP] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IDA;IPI] [GO:0000749 "response to pheromone
involved in conjugation with cellular fusion" evidence=IMP]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IGI;IMP;IDA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IMP] [GO:0016567
"protein ubiquitination" evidence=IMP] [GO:0006368 "transcription
elongation from RNA polymerase II promoter" evidence=IMP]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IPI] [GO:0030015 "CCR4-NOT core complex"
evidence=IPI] InterPro:IPR007282 Pfam:PF04153 SGD:S000002324
GO:GO:0005634 GO:GO:0005737 EMBL:BK006938 GO:GO:0016567
GO:GO:0000122 GO:GO:0051726 GO:GO:0006368 EMBL:Z67750 GO:GO:0032968
GO:GO:0000289 GO:GO:0030015 eggNOG:COG5601 HOGENOM:HOG000246523
KO:K12605 GeneTree:ENSGT00390000001285 GO:GO:0031087 EMBL:X03246
EMBL:X68020 GO:GO:0000749 OrthoDB:EOG4TB7MJ EMBL:X04287 EMBL:Z74213
EMBL:AY557644 PIR:S12304 RefSeq:NP_010116.1
ProteinModelPortal:P06100 DIP:DIP-590N IntAct:P06100
MINT:MINT-400720 STRING:P06100 PaxDb:P06100 PeptideAtlas:P06100
EnsemblFungi:YDL165W GeneID:851389 KEGG:sce:YDL165W CYGD:YDL165w
OMA:WAETSRS NextBio:968543 Genevestigator:P06100 GermOnline:YDL165W
Uniprot:P06100
Length = 191
Score = 110 (43.8 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 22/78 (28%), Positives = 40/78 (51%)
Query: 277 ESLFFIFYYMEGTXXXXXXXXXXXXXSWRFHTKYMMWFQRHE--EPKLINED--YEQGTY 332
E+LFF+FY GT +WR+H W + EP +++ D E+G+Y
Sbjct: 110 ETLFFLFYKHPGTVIQELTYLELRKRNWRYHKTLKAWLTKDPMMEP-IVSADGLSERGSY 168
Query: 333 IYFDNEKWSQRKKEGFTF 350
++FD ++W + +++ F
Sbjct: 169 VFFDPQRWEKCQRDFLLF 186
Score = 39 (18.8 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 25 LASTSPHSPTLGLNHSAV 42
L+ST HS TLG + S++
Sbjct: 20 LSSTYDHSMTLGADLSSM 37
>DICTYBASE|DDB_G0284577 [details] [associations]
symbol:DDB_G0284577 "putative CCR4-NOT complex
subunit 2" species:44689 "Dictyostelium discoideum" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004842 "ubiquitin-protein
ligase activity" evidence=ISS] [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=ISS] [GO:0030015 "CCR4-NOT core complex"
evidence=ISS] [GO:0016567 "protein ubiquitination" evidence=ISS]
InterPro:IPR007282 Pfam:PF04153 dictyBase:DDB_G0284577
GO:GO:0005634 GO:GO:0006355 GO:GO:0016567 EMBL:AAFI02000066
GO:GO:0030015 eggNOG:COG5601 KO:K12605 RefSeq:XP_638512.1
EnsemblProtists:DDB0237628 GeneID:8624662 KEGG:ddi:DDB_G0284577
OMA:HEEYQRK ProtClustDB:CLSZ2846720 Uniprot:Q54PG2
Length = 579
Score = 125 (49.1 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 32/114 (28%), Positives = 53/114 (46%)
Query: 254 PSYYPQVPL----PHSDTLDFFQRLST-ESLFFIFYYMEGTXXXXXXXXXXXXXSWRFHT 308
P YY +PL P+ ++ F L T E+LF+IFY M WR+H
Sbjct: 422 PEYY--IPLCYSTPNLESPTFKMNLFTYETLFYIFYSMPKDVLQLHAAIELYDRDWRYHK 479
Query: 309 KYMMWFQRHE--EPKLINEDYEQGTYIYFDNEKWSQRKKEGFTFEYKYLEDRDL 360
+ +W R + EP I +E G++ +FD W +++ F + LE +++
Sbjct: 480 EGKIWLTRVQGTEPN-ITSTFEVGSFFFFDVTIWETVRRDNFYIPHDLLETKEV 532
>WB|WBGene00003825 [details] [associations]
symbol:ntl-2 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0019915 "lipid storage"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] InterPro:IPR007282 Pfam:PF04153
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0006355 GO:GO:0040011 GO:GO:0040018 GO:GO:0019915
GO:GO:0040035 HOGENOM:HOG000246523 KO:K12605
GeneTree:ENSGT00390000001285 EMBL:FO080154 GeneID:173773
KEGG:cel:CELE_B0286.4 UCSC:B0286.4a.1 CTD:173773 NextBio:881031
PIR:T15310 RefSeq:NP_494772.1 ProteinModelPortal:Q10923
DIP:DIP-25406N IntAct:Q10923 MINT:MINT-1053402 STRING:Q10923
PRIDE:Q10923 EnsemblMetazoa:B0286.4a.1 EnsemblMetazoa:B0286.4a.2
WormBase:B0286.4a InParanoid:Q10923 OMA:THNHIRD ArrayExpress:Q10923
Uniprot:Q10923
Length = 444
Score = 120 (47.3 bits), Expect = 0.00014, P = 0.00014
Identities = 27/88 (30%), Positives = 40/88 (45%)
Query: 273 RLSTESLFFIFYYMEGTXXXXXXXXXXXXXSWRFHTKYMMWFQRHEEPKLINE--DYEQG 330
++S + LF++FY WRFH +W R + + + +YE+G
Sbjct: 267 KVSEDVLFYLFYNCPNEIYQVAAACELYAREWRFHKSEQVWLTRSQYGGVKEQTGNYEKG 326
Query: 331 TYIYFDNEKWSQRKKEGFTFEYKYLEDR 358
Y FD +W + KE EYK LEDR
Sbjct: 327 HYNVFDQMQWRKIPKE-LKLEYKELEDR 353
>UNIPROTKB|Q10923 [details] [associations]
symbol:ntl-2 "Protein NTL-2, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0006898
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0006355
GO:GO:0040011 GO:GO:0040018 GO:GO:0019915 GO:GO:0040035
HOGENOM:HOG000246523 KO:K12605 GeneTree:ENSGT00390000001285
EMBL:FO080154 GeneID:173773 KEGG:cel:CELE_B0286.4 UCSC:B0286.4a.1
CTD:173773 NextBio:881031 PIR:T15310 RefSeq:NP_494772.1
ProteinModelPortal:Q10923 DIP:DIP-25406N IntAct:Q10923
MINT:MINT-1053402 STRING:Q10923 PRIDE:Q10923
EnsemblMetazoa:B0286.4a.1 EnsemblMetazoa:B0286.4a.2
WormBase:B0286.4a InParanoid:Q10923 OMA:THNHIRD ArrayExpress:Q10923
Uniprot:Q10923
Length = 444
Score = 120 (47.3 bits), Expect = 0.00014, P = 0.00014
Identities = 27/88 (30%), Positives = 40/88 (45%)
Query: 273 RLSTESLFFIFYYMEGTXXXXXXXXXXXXXSWRFHTKYMMWFQRHEEPKLINE--DYEQG 330
++S + LF++FY WRFH +W R + + + +YE+G
Sbjct: 267 KVSEDVLFYLFYNCPNEIYQVAAACELYAREWRFHKSEQVWLTRSQYGGVKEQTGNYEKG 326
Query: 331 TYIYFDNEKWSQRKKEGFTFEYKYLEDR 358
Y FD +W + KE EYK LEDR
Sbjct: 327 HYNVFDQMQWRKIPKE-LKLEYKELEDR 353
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.131 0.404 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 361 282 0.00083 115 3 11 22 0.39 34
33 0.42 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 40
No. of states in DFA: 612 (65 KB)
Total size of DFA: 229 KB (2125 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.49u 0.10s 22.59t Elapsed: 00:00:15
Total cpu time: 22.50u 0.10s 22.60t Elapsed: 00:00:15
Start: Thu Aug 15 10:51:12 2013 End: Thu Aug 15 10:51:27 2013