RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4909
(361 letters)
>gnl|CDD|217931 pfam04153, NOT2_3_5, NOT2 / NOT3 / NOT5 family. NOT1, NOT2, NOT3,
NOT4 and NOT5 form a nuclear complex that negatively
regulates the basal and activated transcription of many
genes. This family includes NOT2, NOT3 and NOT5.
Length = 131
Score = 182 bits (463), Expect = 3e-57
Identities = 66/130 (50%), Positives = 85/130 (65%), Gaps = 4/130 (3%)
Query: 229 AYHHLPTPADS-ERLRHY-ITRTPCTTPSYYPQVPLPHSDTLDFFQRLSTESLFFIFYYM 286
++ P+P+D+ ER Y I TPS YPQ P P + FQ+ E+LF+IFYYM
Sbjct: 4 SFASPPSPSDARERPPQYDIPECYLNTPSSYPQNPPP--LSPSKFQKFDDETLFYIFYYM 61
Query: 287 EGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKLINEDYEQGTYIYFDNEKWSQRKKE 346
G QYLAAK LK + WR+H KY WF RHEEPK+I ++YE+G+YIYFD E W +R+KE
Sbjct: 62 PGDLQQYLAAKELKNRGWRYHKKYQTWFTRHEEPKVITDEYERGSYIYFDPESWKKRRKE 121
Query: 347 GFTFEYKYLE 356
FT +Y LE
Sbjct: 122 NFTLDYSDLE 131
>gnl|CDD|227952 COG5665, NOT5, CCR4-NOT transcriptional regulation complex, NOT5
subunit [Transcription].
Length = 548
Score = 145 bits (367), Expect = 4e-39
Identities = 77/319 (24%), Positives = 120/319 (37%), Gaps = 32/319 (10%)
Query: 52 PNAPSSEKKNKSKMNSEEINASKGMVKPTAVRPLSTTNTSATVPSSSAPSILPQSQQSHN 111
P AP E ++S ++ ++ + + N+ T+ + + + + + ++
Sbjct: 250 PIAPGVESASQSISSTPTPVSTDTPLHTVKDDSIKFDNS--TLGTPTTHVSMKKKESEND 307
Query: 112 SLMSLNHGTSGATHLRVTNTRAVLNLRRRPPATTTTLTPPPHLWRSRVIAQDVLDKAGLE 171
S LN +R T + T + A
Sbjct: 308 SEQQLNFPKDSTDEIRKTI--------QHDVETNA----AFQN--PLFNDELKWWLASKR 353
Query: 172 LPPPASDSNSQQQQQQEVYDKSLAPSEAHIPYMLGVVPLGPQPLHKAHH----------Y 221
S P + + L +PL H
Sbjct: 354 YLTQPLQEMSPSMVSTLENSLLNCPDSLDVDSP---ICLYTKPLSLPHPTSHFFPNEPIR 410
Query: 222 QYQLVDQAYHHLPTPADSERLRHYITRTPCTTPSYYPQVPLPHSDTLDFFQRLSTESLFF 281
+ + + P D+++ Y P PS P PL + F + ++LFF
Sbjct: 411 FVEPYNVSLVLTPNENDTDK--KYKPGKPSKAPSKKPDDPLSRFSSARIFMKFDLDTLFF 468
Query: 282 IFYYMEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKLINEDYEQGTYIYFDNEK-W 340
IFY+ +GT QYLAA+ LKK+SWRFH KY WFQR EPK I E+G++ YFD +K W
Sbjct: 469 IFYHYQGTYQQYLAARELKKRSWRFHKKYRTWFQREIEPKPITGKSEEGSWRYFDYKKSW 528
Query: 341 SQRKKEGFTFEYKYLEDRD 359
RKK F F Y+YLE +
Sbjct: 529 LARKKNDFVFNYEYLEKLE 547
>gnl|CDD|227888 COG5601, CDC36, General negative regulator of transcription subunit
[Transcription].
Length = 172
Score = 68.1 bits (166), Expect = 1e-13
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 9/111 (8%)
Query: 253 TPSYYPQVPLP-----HSDTLDFFQRLSTESLFFIFYYMEGTKAQYLAAKALKKQSWRFH 307
P+ YP P P + + + E+LF+IFY Q A L K++WRFH
Sbjct: 64 LPNCYPNAPNPPIFKVNIEDMKMDN-FHDETLFYIFYSFPNDVLQEKAYDELLKRNWRFH 122
Query: 308 TKYMMW--FQRHEEPKLINEDYEQGTYIYFDNEKWSQRKKEGFTFEYKYLE 356
W F P + E+G+Y++FD WS+ + F +YK +
Sbjct: 123 KMLKCWLTFNPGMSPATADHVKERGSYVFFDPFSWSKVSLD-FLLDYKAVR 172
>gnl|CDD|234702 PRK00254, PRK00254, ski2-like helicase; Provisional.
Length = 720
Score = 32.1 bits (73), Expect = 0.47
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 314 FQRHEEPKLINEDYEQGTYIYFDNEKWSQRKKEGFTFEYK 353
+ R E L++E YE +YF+ W K + F +K
Sbjct: 531 YSRKEMEDLLDEAYEMEDRLYFNIPYWEDYKFQKFLRAFK 570
>gnl|CDD|215334 PLN02623, PLN02623, pyruvate kinase.
Length = 581
Score = 31.4 bits (71), Expect = 0.77
Identities = 27/92 (29%), Positives = 34/92 (36%), Gaps = 7/92 (7%)
Query: 65 MNSEEINASKGMVKPTAVRPLSTTNTSATVPSSSAPSILPQSQQSHNSLMSLNHGTSGAT 124
M S E K +K V T AT+P + P L Q+ ++H S M H T A
Sbjct: 415 MLSGETAHGKFPLKAVKVMHTVALRTEATLPEGTTPPNLGQAFKNHMSEMFAFHATMMAN 474
Query: 125 HLRV-------TNTRAVLNLRRRPPATTTTLT 149
L T A+L RP T T
Sbjct: 475 TLGTSIIVFTRTGFMAILLSHYRPSGTIFAFT 506
>gnl|CDD|217835 pfam03999, MAP65_ASE1, Microtubule associated protein (MAP65/ASE1
family).
Length = 619
Score = 31.0 bits (70), Expect = 1.1
Identities = 17/102 (16%), Positives = 32/102 (31%), Gaps = 3/102 (2%)
Query: 50 VEPNAPSSEKKNKSKMNSEEINASKGMVKPTAVRP-LSTTNTSATVPSSSAPSILPQSQQ 108
E + KK +K ++ P + + T + S ++
Sbjct: 438 QEKQRAKARKKLANKTSTVMEPPYGSTESSVPSTPSTRRNDRNITSNTPSLKRTPNLTKS 497
Query: 109 SHNSLMSLNHGTSGATHLRVTNTRAVLNLRRRPPATTTTLTP 150
S + SL ++G TH T R + PA + +
Sbjct: 498 SLSQEASLISKSTGNTHKHSTPRRLTTLP--KLPAASRSSKG 537
>gnl|CDD|221188 pfam11725, AvrE, Pathogenicity factor. This family is secreted by
gram-negative Gammaproteobacteria such as Pseudomonas
syringae of tomato and the fire blight plant pathogen
Erwinia amylovora, amongst others. It is an essential
pathogenicity factor of approximately 198 kDa. Its
injection into the host-plant is dependent upon the
bacterial type III or Hrp secretion system. The family
is long and carries a number of predicted functional
regions, including an ERMS or endoplasmic reticulum
membrane retention signal at both the C- and the
N-termini, a leucine-zipper motif from residues 539-560,
and a nuclear localisation signal at 1358-1361. this
conserved AvrE-family of effectors is among the few that
are required for full virulence of many phytopathogenic
pseudomonads, erwinias and pantoeas.
Length = 1771
Score = 30.9 bits (70), Expect = 1.3
Identities = 45/236 (19%), Positives = 67/236 (28%), Gaps = 41/236 (17%)
Query: 7 AGVVPSSATTDSNGTPNSLASTSPHSPTLGLNHSAVTECSSSSVEPNAPSSEKKNKSKMN 66
V P + + T +S SP T+ +S S+ S KKN+ KM
Sbjct: 12 TAVQPEATPSAGAPTGLQQSSESP------------TQRASHSLA----SEGKKNRKKM- 54
Query: 67 SEEINASKGMVKPTAVRPLSTTNTSATVPSSSAPSILPQSQQSHNSLMSLNHGTSGATHL 126
+ S + P N +A P SS L + S +
Sbjct: 55 PKVFQKSSAPRQ-IQAAPPQALNPTAAAPQSSRGPTLRELLALPEDDGETQAPESSPSAR 113
Query: 127 RVTNTRAVLNLRRRPPATTTTLTPPPHLWRSRVIAQDVLDKAGLELPPPASDSNSQQQQQ 186
R+T + V A + P R + QD+L+K+ PP S +
Sbjct: 114 RLTRSEGVARHEMEDLAGRPVVKPDA----DRQLRQDILNKSSSSRRPPVSKEEGTSSKM 169
Query: 187 -----------------QEVYDKSLAPSEAHIPYMLGVVPLGPQPLHKAHHYQYQL 225
QEV +A + P A Q L
Sbjct: 170 PATALASAALFKDDEIRQEVDAAR--SDQASQSRLSRSRGNPPAIPPDAAPRQPML 223
>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope
glycoprotein (BLLF1). This family consists of the BLLF1
viral late glycoprotein, also termed gp350/220. It is
the most abundantly expressed glycoprotein in the viral
envelope of the Herpesviruses and is the major antigen
responsible for stimulating the production of
neutralising antibodies in vivo.
Length = 830
Score = 30.9 bits (69), Expect = 1.3
Identities = 55/296 (18%), Positives = 79/296 (26%), Gaps = 40/296 (13%)
Query: 11 PSSATTDSNGTPNSLASTSPH----SPTLGLNHSAVTECSS----SSVEPNAPSS----- 57
P+S TT + S SPT S V A S
Sbjct: 488 PTSRTTSATPNATSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGTT 547
Query: 58 EKKNKSKMNSEEINASKGMVKPTAVRPLSTTNTSATVPSSSAPSILPQSQQ--------- 108
N + E + P + TSA P SQQ
Sbjct: 548 SVPNATSPQVTEESPVNNTNTPVVTSA-PSVLTSAVTTGQHGTGSSPTSQQPGIPSSSHS 606
Query: 109 -------SHNSLMSLNHGTSGATHLRVT----NTRAVLNLRRRPPATTTTLTPPPHLWRS 157
S L++ H T G T +T V L P TT+ P +
Sbjct: 607 TPRSNSTSTTPLLTSAHPTGGENITEETPSVPSTTHVSTLSPGPGPGTTSQVSGPGNSST 666
Query: 158 RVIAQDVLDKAGLELPPPASDSNS---QQQQQQEVYDKSLAPSEAHIPYMLGVVPLGPQP 214
+V G +P P + S S Q+ + + + G +
Sbjct: 667 SRYPGEVHVTEG--MPNPNATSPSAPSGQKTAVPTVTSTGGKANSTTKETSGSTLMASTS 724
Query: 215 LHKAHHYQYQLVDQAYHHLPTPADSERLRHYITRTPCTTPSYYPQVPLPHSDTLDF 270
H A + P+ S +LR T T + VP+P + D
Sbjct: 725 PHTNEGAFRTTPYNATTY-LPPSTSSKLRPRWTFTSPPVTTKQATVPVPPTQHPDH 779
>gnl|CDD|233870 TIGR02442, Cob-chelat-sub, cobaltochelatase subunit.
Cobaltochelatase is responsible for the insertion of
cobalt into the corrin ring of coenzyme B12 during its
biosynthesis. Two versions have been well described.
CbiK/CbiX is a monomeric, anaerobic version which acts
early in the biosynthesis (pfam06180). CobNST is a
trimeric, ATP-dependent, aerobic version which acts late
in the biosynthesis (TIGR02257/TIGR01650/TIGR01651). A
number of genomes (actinobacteria, cyanobacteria,
betaproteobacteria and pseudomonads) which apparently
biosynthesize B12, encode a cobN gene but are
demonstrably lacking cobS and cobT. These genomes do,
however contain a homolog (modelled here) of the
magnesium chelatase subunits BchI/BchD family. Aside
from the cyanobacteria (which have a separate magnesium
chelatase trimer), these species do not make chlorins,
so do not have any use for a magnesium chelatase.
Furthermore, in nearly all cases the members of this
family are proximal to either CobN itself or other genes
involved in cobalt transport or B12 biosynthesis.
Length = 633
Score = 30.0 bits (68), Expect = 1.9
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 156 RSRVIAQDVLDKAGLELPPPASDSNSQQQQQQEVYDKSLAPSEA 199
R RV A+DV + A L LP +Q Q ++ D P E
Sbjct: 289 RRRVTAEDVREAAELVLPHRRRRKPFEQPQGKDEKDLEEKPEEP 332
>gnl|CDD|225805 COG3266, DamX, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 292
Score = 29.1 bits (65), Expect = 2.9
Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 2/99 (2%)
Query: 5 ELAGVVPSSATTDSNGTPNSLASTSPHSPTLGLNHSAVTECSSSSVEPNAPSS--EKKNK 62
E+ G + ++A N + + + + PT + V S + E A + +
Sbjct: 101 EVQGDLNNAAVQPQNLSQLNNVAVTSTLPTEPATVAPVRNASVPTAERPAITRPVRAQAV 160
Query: 63 SKMNSEEINASKGMVKPTAVRPLSTTNTSATVPSSSAPS 101
S+ E A V+ S T AT P+ +
Sbjct: 161 SEPAVEPKAAKTATATEAKVQTASPAQTPATPPAGKGAA 199
>gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane
glycoprotein G.
Length = 408
Score = 28.9 bits (64), Expect = 4.9
Identities = 33/180 (18%), Positives = 48/180 (26%), Gaps = 21/180 (11%)
Query: 10 VPSSATTDSNGTPNSLASTSPHSPTLGLNHSAVTECSSSSVEPNAPSSEKKNKSK--MNS 67
P +A T S T + P P+ + A + + ++S
Sbjct: 167 EPKTAVTTSKTTSWPTEVSHPTYPS-----------QVTPQSQPATQGHQTATANQRLSS 215
Query: 68 EEINASKGMVKPTAVRPLSTTNTSATVPSSSAPSILPQSQQSHNSLMSLNHGTSGATHLR 127
E ++G + P + PS PS PQ S S G R
Sbjct: 216 TEPVGTQGTTTSSNPEPQTEPP-----PSQRGPSGSPQHPPSTTSQDQSTTGDGQEHTQR 270
Query: 128 VTNTRAVLNLRRRPPATTTTLTPPPHLWRSRVIAQDVLDKAGLELP---PPASDSNSQQQ 184
A N R T T ++G P PP +N Q
Sbjct: 271 RKTPPATSNRRSPHSTATPPPTTKRQETGRPTPRPTATTQSGSSPPHSSPPGVQANPTTQ 330
>gnl|CDD|149675 pfam08694, UFC1, Ubiquitin-fold modifier-conjugating enzyme 1.
Ubiquitin-like (UBL) post-translational modifiers are
covalently linked to most, if not all, target protein(s)
through an enzymatic cascade analogous to
ubiquitylation, consisting of E1 (activating), E2
(conjugating), and E3 (ligating) enzymes. Ubiquitin-fold
modifier 1 (Ufm1) a ubiquitin-like protein is activated
by a novel E1-like enzyme, Uba5, by forming a
high-energy thioester bond. Activated Ufm1 is then
transferred to its cognate E2-like enzyme, Ufc1, in a
similar thioester linkage. This family represents the
E2-like enzyme.
Length = 161
Score = 28.2 bits (63), Expect = 5.2
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 335 FDNEKWSQRKKEGFTFEYKYLE 356
D EKW QR KE + KY+E
Sbjct: 20 RDGEKWIQRLKEEYQALIKYVE 41
>gnl|CDD|221145 pfam11596, DUF3246, Protein of unknown function (DUF3246). This is
a small family of fungal proteins one of whose members
from Pichia stipitis is described as being an extremely
serine rich protein-mucin-like protein.
Length = 208
Score = 28.2 bits (62), Expect = 5.3
Identities = 13/73 (17%), Positives = 24/73 (32%)
Query: 77 VKPTAVRPLSTTNTSATVPSSSAPSILPQSQQSHNSLMSLNHGTSGATHLRVTNTRAVLN 136
PT T T++ + P+ + +++ T+ T N
Sbjct: 63 ANPTGTVTTDPTGTTSQTVVPTKPTTTDDDDDTTCVETTISDPTTITTPTGTVNGNPTGT 122
Query: 137 LRRRPPATTTTLT 149
+ ATTT +T
Sbjct: 123 VTTNGTATTTVIT 135
>gnl|CDD|226264 COG3741, HutG, N-formylglutamate amidohydrolase [Amino acid
transport and metabolism].
Length = 272
Score = 28.5 bits (64), Expect = 5.3
Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 13/65 (20%)
Query: 122 GATHLRVTNTRAVLNLRRRPPA-------TTTTLTPPPHLWRSRVIAQDVLDKAGLELPP 174
GAT LR +RAV+++ R P TT L P + L G P
Sbjct: 62 GATLLRANFSRAVVDVNREPDGASLYPGRVTTGLGPVT-----TFDGEP-LYIYGGAPTP 115
Query: 175 PASDS 179
+ +
Sbjct: 116 AEALA 120
>gnl|CDD|226363 COG3844, COG3844, Kynureninase [Amino acid transport and
metabolism].
Length = 407
Score = 28.6 bits (64), Expect = 5.3
Identities = 26/102 (25%), Positives = 33/102 (32%), Gaps = 22/102 (21%)
Query: 140 RPPATTTTLTPPPHLWRSRVIAQDVLDKAGLELPPPASDSNSQQQQQQEVYDKSLAPSEA 199
RP A P P R Q VL A LE + E+ KSLA ++
Sbjct: 262 RPFAMEEVYAPGPGARRFLCGTQPVLSLAALE----GALDIFADVDITELRKKSLALTD- 316
Query: 200 HIPYMLGVVPLGPQPLHKAHHYQYQLVDQAYHHLPTPADSER 241
Y + +V +A Y L L TP E
Sbjct: 317 ---YFIELV--------EARCEYYGL------TLVTPRAHEE 341
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 28.8 bits (64), Expect = 6.5
Identities = 38/261 (14%), Positives = 63/261 (24%), Gaps = 32/261 (12%)
Query: 11 PSSATTDSNGTPNSLASTSPH--SPTLGLNHSAVTECSSSSVEPNAPSSEKKNKSKMNSE 68
P++A + P + A+ P + + S E S +P P + +
Sbjct: 2761 PTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPP 2820
Query: 69 EINASKGMVKPTAVRPLSTTNTSATVPSSSAP--SILPQSQQSHNSLMSLNHGTSGATHL 126
+ + + PT+ +P + P S S+ P S +
Sbjct: 2821 AASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRR-------RPPSRSPAA 2873
Query: 127 RVTNTRAVLNLRRRPPATTTTLTPPPHLWRSRVIAQDVLDKAGLELPPPASDSNSQQQQQ 186
+ RPP S + D + P Q
Sbjct: 2874 KPAA-------PARPPVRRLARPAVSRSTESFALPPD-------QPERPPQPQAPPPPQP 2919
Query: 187 QEVYDKSLAPSEAHIPYMLGVVPLGPQPLHKAHHYQYQLVDQAYHHLPTPADSERLRHYI 246
Q P P PL P + +P P + +
Sbjct: 2920 QPQPPPPPQPQPPPPPPPRPQPPLAPTT-------DPAGAGEPSGAVPQPWLGALVPGRV 2972
Query: 247 TRTPCTTPSYYPQVPLPHSDT 267
P P P S T
Sbjct: 2973 AVPRFRVPQPAPSREAPASST 2993
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional.
Length = 1355
Score = 28.5 bits (63), Expect = 8.0
Identities = 26/97 (26%), Positives = 32/97 (32%), Gaps = 12/97 (12%)
Query: 173 PPPASDSNSQQQQQQEVYDKSLAPSEAHIPYMLGVVPLGPQPLHKAHHYQYQLVDQAYHH 232
P P Q Q Y + P Y P+ PQP QYQ Q
Sbjct: 787 PQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQP-------QYQQPQQP--- 836
Query: 233 LPTPADSERLRH-YITRTPCTTPSYYPQVPLPHSDTL 268
P + L H + R + P + P PLP D L
Sbjct: 837 -VAPQPQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLL 872
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 28.1 bits (62), Expect = 9.6
Identities = 36/175 (20%), Positives = 52/175 (29%), Gaps = 10/175 (5%)
Query: 97 SSAPSILPQSQQSHNSLMSLNHGTSGATHLRVTNTRAVLNLRRRPPATTTTLTPPPHLWR 156
SSA L Q Q + + G + A A + P P
Sbjct: 166 SSAQQQLLQPQ--GPPSIQVPPGAALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSP 223
Query: 157 SRVIAQDVLDKAGLELPPPA-SDSNSQQQQQQEVYDKSLAPSEAH------IPYMLGVVP 209
+I+ L L P P + QQ Q S P +H +P+ L P
Sbjct: 224 LSLISAPSLHPQRLPSPHPPLQPQTASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGP 283
Query: 210 LGPQPLHKAHHYQYQLVDQAYHHLPTPADSERLRHYITRTPCTTPSYYP-QVPLP 263
+ Q + L LP P+ ++ H P P + PLP
Sbjct: 284 VFLQHPSSNPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLP 338
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.312 0.126 0.373
Gapped
Lambda K H
0.267 0.0588 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,936,888
Number of extensions: 1644546
Number of successful extensions: 1236
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1215
Number of HSP's successfully gapped: 52
Length of query: 361
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 263
Effective length of database: 6,590,910
Effective search space: 1733409330
Effective search space used: 1733409330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.2 bits)