RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4909
         (361 letters)



>d3bzna1 d.161.1.1 (A:2-429) Menaquinone-specific isochorismate
           synthase MenF {Escherichia coli [TaxId: 562]}
          Length = 428

 Score = 28.6 bits (63), Expect = 1.1
 Identities = 12/55 (21%), Positives = 20/55 (36%)

Query: 242 LRHYITRTPCTTPSYYPQVPLPHSDTLDFFQRLSTESLFFIFYYMEGTKAQYLAA 296
           LRH     P T       +P P  D  D    L+++  +  FY+ +    +    
Sbjct: 11  LRHLSQEIPATPGIRVIDIPFPLKDAFDALSWLASQQTYPQFYWQQRNGDEEAVV 65


>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14
           (SPCC320.14, SPCC330.15c) {Fission yeast
           (Schizosaccharomyces pombe) [TaxId: 4896]}
          Length = 318

 Score = 28.0 bits (61), Expect = 2.1
 Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 4/23 (17%)

Query: 233 LPTPAD----SERLRHYITRTPC 251
           LPT  D    SER++ +  +TP 
Sbjct: 2   LPTYDDVASASERIKKFANKTPV 24


>d1uqta_ c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA
           {Escherichia coli [TaxId: 562]}
          Length = 456

 Score = 26.0 bits (56), Expect = 9.7
 Identities = 10/96 (10%), Positives = 26/96 (27%), Gaps = 12/96 (12%)

Query: 257 YPQVPLPHSDTLDFFQRLSTESLFFIFYYM------------EGTKAQYLAAKALKKQSW 304
           +    L   D  +++ + S   L+  F+Y                +   L A  L     
Sbjct: 62  WASFNLSEQDLDEYYNQFSNAVLWPAFHYRLDLVQFQRPAWDGYLRVNALLADKLLPLLQ 121

Query: 305 RFHTKYMMWFQRHEEPKLINEDYEQGTYIYFDNEKW 340
                ++  +        + +        +F +  +
Sbjct: 122 DDDIIWIHDYHLLPFAHELRKRGVNNRIGFFLHIPF 157


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.126    0.373 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,284,116
Number of extensions: 56940
Number of successful extensions: 94
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 7
Length of query: 361
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 275
Effective length of database: 1,226,816
Effective search space: 337374400
Effective search space used: 337374400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.7 bits)