BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4919
(96 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F3L|B Chain B, Crystal Structure Of The Heterodimeric Clock:bmal1
Transcriptional Activator Complex
Length = 387
Score = 75.5 bits (184), Expect = 8e-15, Method: Composition-based stats.
Identities = 42/96 (43%), Positives = 55/96 (57%), Gaps = 17/96 (17%)
Query: 10 NTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTG--------------LG 55
N T+ YKP+FL+D ELKHLIL AADGFLFVV CD G+++ +G
Sbjct: 70 NPYTEANYKPTFLSDDELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIG 129
Query: 56 LPCSDSV---DIEKVREQLSTQEPQNAGRILDLKTG 88
D + DI KV+EQLS+ + R++D KTG
Sbjct: 130 QSLFDYLHPKDIAKVKEQLSSSDTAPRERLIDAKTG 165
>pdb|4F3L|A Chain A, Crystal Structure Of The Heterodimeric Clock:bmal1
Transcriptional Activator Complex
Length = 361
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 1 MRESQERTGNTSTDGT---YKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVT 52
+R+ +E T + +KP+FL+++E L+LEA DGF + D + V+
Sbjct: 58 LRKHKETTAQSDASEIRQDWKPTFLSNEEFTQLMLEALDGFFLAIMTDGSIIYVS 112
>pdb|2X03|A Chain A, The X-Ray Structure Of The Streptomyces Coelicolor A3
Chondroitin Ac Lyase Y253 Mutant
pdb|2X03|B Chain B, The X-Ray Structure Of The Streptomyces Coelicolor A3
Chondroitin Ac Lyase Y253 Mutant
Length = 765
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 9/58 (15%)
Query: 12 STDGTYKPSFLTDQELKHL--ILEAADGFLFVVACDTGRVVVTGLGLPCSDSVDIEKV 67
+TDG Y Q LK L LEA + F+ VV G G+ C+D V +E V
Sbjct: 502 ATDGEYAA---VGQHLKGLGSTLEARKSWFFL----DDAVVCLGAGITCADGVPVETV 552
>pdb|2WDA|A Chain A, The X-Ray Structure Of The Streptomyces Coelicolor A3
Chondroitin Ac Lyase In Complex With Chondroitin
Sulphate
pdb|2WCO|A Chain A, Structures Of The Streptomyces Coelicolor A3(2) Hyaluronan
Lyase In Complex With Oligosaccharide Substrates And An
Inhibitor
Length = 765
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 9/58 (15%)
Query: 12 STDGTYKPSFLTDQELKHL--ILEAADGFLFVVACDTGRVVVTGLGLPCSDSVDIEKV 67
+TDG Y Q LK L LEA + F+ VV G G+ C+D V +E V
Sbjct: 502 ATDGEYAA---VGQHLKGLGSTLEARKSWFFL----DDAVVCLGAGITCADGVPVETV 552
>pdb|1WNW|A Chain A, D136n Mutant Of Heme Oxygenase From Corynebacterium
Diphtheriae (hmuo)
pdb|1WNW|B Chain B, D136n Mutant Of Heme Oxygenase From Corynebacterium
Diphtheriae (hmuo)
pdb|1WNW|C Chain C, D136n Mutant Of Heme Oxygenase From Corynebacterium
Diphtheriae (hmuo)
Length = 215
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 22 LTDQELKHLILEAADGFLF--VVACDTGR 48
L+D++ +HL+ EA D F+F V D G+
Sbjct: 185 LSDEQREHLLKEATDAFVFNHQVFADLGK 213
>pdb|1WNX|A Chain A, D136e Mutant Of Heme Oxygenase From Corynebacterium
Diphtheriae (Hmuo)
pdb|1WNX|B Chain B, D136e Mutant Of Heme Oxygenase From Corynebacterium
Diphtheriae (Hmuo)
Length = 215
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 22 LTDQELKHLILEAADGFLF--VVACDTGR 48
L+D++ +HL+ EA D F+F V D G+
Sbjct: 185 LSDEQREHLLKEATDAFVFNHQVFADLGK 213
>pdb|1WNV|A Chain A, D136a Mutant Of Heme Oxygenase From Corynebacterium
Diphtheriae (Hmuo)
pdb|1WNV|B Chain B, D136a Mutant Of Heme Oxygenase From Corynebacterium
Diphtheriae (Hmuo)
pdb|1WNV|C Chain C, D136a Mutant Of Heme Oxygenase From Corynebacterium
Diphtheriae (Hmuo)
Length = 215
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 22 LTDQELKHLILEAADGFLF--VVACDTGR 48
L+D++ +HL+ EA D F+F V D G+
Sbjct: 185 LSDEQREHLLKEATDAFVFNHQVFADLGK 213
>pdb|1IW0|A Chain A, Crystal Structure Of A Heme Oxygenase (Hmuo) From
Corynebacterium Diphtheriae Complexed With Heme In The
Ferric State
pdb|1IW0|B Chain B, Crystal Structure Of A Heme Oxygenase (Hmuo) From
Corynebacterium Diphtheriae Complexed With Heme In The
Ferric State
pdb|1IW0|C Chain C, Crystal Structure Of A Heme Oxygenase (Hmuo) From
Corynebacterium Diphtheriae Complexed With Heme In The
Ferric State
pdb|1IW1|A Chain A, Crystal Structure Of A Heme Oxygenase (Hmuo) From
Corynebacterium Diphtheriae Complexed With Heme In The
Ferrous State
pdb|1IW1|B Chain B, Crystal Structure Of A Heme Oxygenase (Hmuo) From
Corynebacterium Diphtheriae Complexed With Heme In The
Ferrous State
pdb|1IW1|C Chain C, Crystal Structure Of A Heme Oxygenase (Hmuo) From
Corynebacterium Diphtheriae Complexed With Heme In The
Ferrous State
pdb|1V8X|A Chain A, Crystal Structure Of The Dioxygen-Bound Heme Oxygenase
From Corynebacterium Diphtheriae
pdb|1V8X|B Chain B, Crystal Structure Of The Dioxygen-Bound Heme Oxygenase
From Corynebacterium Diphtheriae
pdb|1V8X|C Chain C, Crystal Structure Of The Dioxygen-Bound Heme Oxygenase
From Corynebacterium Diphtheriae
pdb|1WZD|A Chain A, Crystal Structure Of An Artificial Metalloprotein:
Fe(10-Ch2ch2cooh- Salophen)WILD TYPE HEME OXYGENASE
pdb|1WZD|B Chain B, Crystal Structure Of An Artificial Metalloprotein:
Fe(10-Ch2ch2cooh- Salophen)WILD TYPE HEME OXYGENASE
pdb|1WZF|A Chain A, Crystal Structure Of An Artificial Metalloprotein:
Fe(10-Cooh- Salophen)WILD TYPE HEME OXYGENASE
pdb|1WZF|B Chain B, Crystal Structure Of An Artificial Metalloprotein:
Fe(10-Cooh- Salophen)WILD TYPE HEME OXYGENASE
pdb|1WZG|A Chain A, Crystal Structure Of An Artificial Metalloprotein:
Fe(Salophen)WILD Type Heme Oxygenase
pdb|1WZG|B Chain B, Crystal Structure Of An Artificial Metalloprotein:
Fe(Salophen)WILD Type Heme Oxygenase
pdb|2Z68|A Chain A, Crystal Structure Of An Artificial Metalloprotein: Cr[n-
Salicylidene-4-Amino-3-Hydroxyhydrocinnamic Acid]WILD
Type Heme Oxygenase
pdb|2Z68|B Chain B, Crystal Structure Of An Artificial Metalloprotein: Cr[n-
Salicylidene-4-Amino-3-Hydroxyhydrocinnamic Acid]WILD
Type Heme Oxygenase
pdb|3I8R|A Chain A, Crystal Structure Of The Heme Oxygenase From
Corynebacterium Diphtheriae (Hmuo) In Complex With Heme
Binding Ditiothreit
pdb|3I8R|B Chain B, Crystal Structure Of The Heme Oxygenase From
Corynebacterium Diphtheriae (Hmuo) In Complex With Heme
Binding Ditiothreit
pdb|3I8R|C Chain C, Crystal Structure Of The Heme Oxygenase From
Corynebacterium Diphtheriae (Hmuo) In Complex With Heme
Binding Ditiothreit
pdb|3MOO|A Chain A, Crystal Structure Of The Hmuo, Heme Oxygenase From
Corynebacterium Diphtheriae, In Complex With Azide-Bound
Verdoheme
pdb|3MOO|B Chain B, Crystal Structure Of The Hmuo, Heme Oxygenase From
Corynebacterium Diphtheriae, In Complex With Azide-Bound
Verdoheme
Length = 215
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 22 LTDQELKHLILEAADGFLF--VVACDTGR 48
L+D++ +HL+ EA D F+F V D G+
Sbjct: 185 LSDEQREHLLKEATDAFVFNHQVFADLGK 213
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.132 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,869,705
Number of Sequences: 62578
Number of extensions: 101095
Number of successful extensions: 173
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 166
Number of HSP's gapped (non-prelim): 8
length of query: 96
length of database: 14,973,337
effective HSP length: 62
effective length of query: 34
effective length of database: 11,093,501
effective search space: 377179034
effective search space used: 377179034
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)