BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4919
(96 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O15945|ARNT_DROME Aryl hydrocarbon receptor nuclear translocator homolog
OS=Drosophila melanogaster GN=tgo PE=1 SV=3
Length = 642
Score = 133 bits (334), Expect = 3e-31, Method: Composition-based stats.
Identities = 73/112 (65%), Positives = 79/112 (70%), Gaps = 29/112 (25%)
Query: 8 TGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTGLGLPCSDSV----- 62
TGNTS+DGTYKPSFLTDQELKHLILEAADGFLFVV+CD+GRV+ SDSV
Sbjct: 69 TGNTSSDGTYKPSFLTDQELKHLILEAADGFLFVVSCDSGRVIYV------SDSVTPVLN 122
Query: 63 ------------------DIEKVREQLSTQEPQNAGRILDLKTGTVKKEGHQ 96
D EK+REQLSTQE QNAGRILDLK+GTVKKEGHQ
Sbjct: 123 YTQSDWYGTSLYEHIHPDDREKIREQLSTQESQNAGRILDLKSGTVKKEGHQ 174
>sp|Q9BE97|ARNT_BOVIN Aryl hydrocarbon receptor nuclear translocator OS=Bos taurus
GN=ARNT PE=2 SV=1
Length = 790
Score = 125 bits (313), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 68/106 (64%), Positives = 75/106 (70%), Gaps = 17/106 (16%)
Query: 8 TGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTG------LGLPCSDS 61
TGNTSTDGTYKPSFLTDQELKHLILEAADGFLF+V+C+TGRVV L P S+
Sbjct: 145 TGNTSTDGTYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEW 204
Query: 62 V-----------DIEKVREQLSTQEPQNAGRILDLKTGTVKKEGHQ 96
D++K+REQLST E GRILDLKTGTVKKEG Q
Sbjct: 205 FGSTLYDQVHPDDVDKLREQLSTSENALTGRILDLKTGTVKKEGQQ 250
>sp|P41739|ARNT_RAT Aryl hydrocarbon receptor nuclear translocator OS=Rattus norvegicus
GN=Arnt PE=1 SV=2
Length = 800
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/106 (63%), Positives = 75/106 (70%), Gaps = 17/106 (16%)
Query: 8 TGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTG------LGLPCSDS 61
TGNTSTDG+YKPSFLTDQELKHLILEAADGFLF+V+C+TGRVV L P S+
Sbjct: 145 TGNTSTDGSYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEW 204
Query: 62 V-----------DIEKVREQLSTQEPQNAGRILDLKTGTVKKEGHQ 96
D++K+REQLST E GRILDLKTGTVKKEG Q
Sbjct: 205 FGSTLYDQVHPDDVDKLREQLSTSENALTGRILDLKTGTVKKEGQQ 250
>sp|O02748|ARNT_RABIT Aryl hydrocarbon receptor nuclear translocator OS=Oryctolagus
cuniculus GN=ARNT PE=2 SV=1
Length = 790
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/106 (63%), Positives = 75/106 (70%), Gaps = 17/106 (16%)
Query: 8 TGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTG------LGLPCSDS 61
TGNTSTDG+YKPSFLTDQELKHLILEAADGFLF+V+C+TGRVV L P S+
Sbjct: 145 TGNTSTDGSYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEW 204
Query: 62 V-----------DIEKVREQLSTQEPQNAGRILDLKTGTVKKEGHQ 96
D++K+REQLST E GRILDLKTGTVKKEG Q
Sbjct: 205 FGSTLYDQVHPDDVDKLREQLSTSENALTGRILDLKTGTVKKEGQQ 250
>sp|P27540|ARNT_HUMAN Aryl hydrocarbon receptor nuclear translocator OS=Homo sapiens
GN=ARNT PE=1 SV=1
Length = 789
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/106 (63%), Positives = 75/106 (70%), Gaps = 17/106 (16%)
Query: 8 TGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTG------LGLPCSDS 61
TGNTSTDG+YKPSFLTDQELKHLILEAADGFLF+V+C+TGRVV L P S+
Sbjct: 145 TGNTSTDGSYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEW 204
Query: 62 V-----------DIEKVREQLSTQEPQNAGRILDLKTGTVKKEGHQ 96
D++K+REQLST E GRILDLKTGTVKKEG Q
Sbjct: 205 FGSTLYDQVHPDDVDKLREQLSTSENALTGRILDLKTGTVKKEGQQ 250
>sp|P53762|ARNT_MOUSE Aryl hydrocarbon receptor nuclear translocator OS=Mus musculus
GN=Arnt PE=1 SV=3
Length = 791
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/106 (62%), Positives = 75/106 (70%), Gaps = 17/106 (16%)
Query: 8 TGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTG------LGLPCSDS 61
TGNTSTDG+YKPSFLTDQELKHLILEAADGFLF+V+C+TGRVV L P S+
Sbjct: 145 TGNTSTDGSYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEW 204
Query: 62 V-----------DIEKVREQLSTQEPQNAGRILDLKTGTVKKEGHQ 96
D++K+REQLST E GR+LDLKTGTVKKEG Q
Sbjct: 205 FGSTLYDQVHPDDVDKLREQLSTSENALTGRVLDLKTGTVKKEGQQ 250
>sp|Q9DG12|ARNT2_DANRE Aryl hydrocarbon receptor nuclear translocator 2 OS=Danio rerio
GN=arnt2 PE=1 SV=2
Length = 737
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/111 (60%), Positives = 75/111 (67%), Gaps = 17/111 (15%)
Query: 3 ESQERTGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTG------LGL 56
+S TGNTSTDG YKPSFLT+QELKHLILEAADGFLFVVA +TGRV+ L
Sbjct: 129 KSMRGTGNTSTDGAYKPSFLTEQELKHLILEAADGFLFVVAAETGRVIYVSDSVTPVLNH 188
Query: 57 PCSDSV-----------DIEKVREQLSTQEPQNAGRILDLKTGTVKKEGHQ 96
P S+ D++K+REQLST E GRILDLKTGTVKKEG Q
Sbjct: 189 PQSEWFGSTLFEQVHPDDVDKLREQLSTSENSMTGRILDLKTGTVKKEGQQ 239
>sp|P79832|ARNT_ONCMY Aryl hydrocarbon receptor nuclear translocator OS=Oncorhynchus
mykiss GN=arnt PE=1 SV=1
Length = 723
Score = 120 bits (300), Expect = 4e-27, Method: Composition-based stats.
Identities = 66/111 (59%), Positives = 76/111 (68%), Gaps = 17/111 (15%)
Query: 3 ESQERTGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTG--------- 53
+S +GNT+ DGTYKPSFLTDQELKHLILEAADGFLFVV+C++GRVV
Sbjct: 116 KSLRGSGNTAADGTYKPSFLTDQELKHLILEAADGFLFVVSCESGRVVYVSDSLTPVLNQ 175
Query: 54 -----LGLPCSDSV---DIEKVREQLSTQEPQNAGRILDLKTGTVKKEGHQ 96
LG D + D +K+REQLST E N GR+LDLKTGTVKKEG Q
Sbjct: 176 SQSDWLGSSLYDQLHPDDGDKLREQLSTAESNNTGRMLDLKTGTVKKEGQQ 226
>sp|Q61324|ARNT2_MOUSE Aryl hydrocarbon receptor nuclear translocator 2 OS=Mus musculus
GN=Arnt2 PE=1 SV=2
Length = 712
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/111 (59%), Positives = 73/111 (65%), Gaps = 17/111 (15%)
Query: 3 ESQERTGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTG------LGL 56
+S TGN STDG YKPSFLT+QELKHLILEAADGFLFVVA +TGRV+ L
Sbjct: 114 KSMRGTGNKSTDGAYKPSFLTEQELKHLILEAADGFLFVVAAETGRVIYVSDSVTPVLNQ 173
Query: 57 PCSDSV-----------DIEKVREQLSTQEPQNAGRILDLKTGTVKKEGHQ 96
P S+ D+EK+REQL T E GRILDLKTGTVKKEG Q
Sbjct: 174 PQSEWFGSTLYEQVHPDDVEKLREQLCTSENSMTGRILDLKTGTVKKEGQQ 224
>sp|Q78E60|ARNT2_RAT Aryl hydrocarbon receptor nuclear translocator 2 OS=Rattus
norvegicus GN=Arnt2 PE=2 SV=1
Length = 712
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/111 (59%), Positives = 73/111 (65%), Gaps = 17/111 (15%)
Query: 3 ESQERTGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTG------LGL 56
+S TGN STDG YKPSFLT+QELKHLILEAADGFLFVVA +TGRV+ L
Sbjct: 114 KSMRGTGNKSTDGAYKPSFLTEQELKHLILEAADGFLFVVAAETGRVIYVSDSVTPVLNQ 173
Query: 57 PCSDSV-----------DIEKVREQLSTQEPQNAGRILDLKTGTVKKEGHQ 96
P S+ D+EK+REQL T E GRILDLKTGTVKKEG Q
Sbjct: 174 PQSEWFGSTLYEQVHPDDVEKLREQLCTSENSMTGRILDLKTGTVKKEGQQ 224
>sp|Q9HBZ2|ARNT2_HUMAN Aryl hydrocarbon receptor nuclear translocator 2 OS=Homo sapiens
GN=ARNT2 PE=1 SV=2
Length = 717
Score = 113 bits (283), Expect = 3e-25, Method: Composition-based stats.
Identities = 66/111 (59%), Positives = 73/111 (65%), Gaps = 17/111 (15%)
Query: 3 ESQERTGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTG------LGL 56
+S TGN STDG YKPSFLT+QELKHLILEAADGFLFVVA +TGRV+ L
Sbjct: 114 KSMRGTGNKSTDGAYKPSFLTEQELKHLILEAADGFLFVVAAETGRVIYVSDSVTPVLNQ 173
Query: 57 PCSDSV-----------DIEKVREQLSTQEPQNAGRILDLKTGTVKKEGHQ 96
P S+ D+EK+REQL T E GRILDLKTGTVKKEG Q
Sbjct: 174 PQSEWFGSTLYEQVHPDDVEKLREQLCTSENSMTGRILDLKTGTVKKEGQQ 224
>sp|O02219|AHA1_CAEEL Aryl hydrocarbon receptor nuclear translocator homolog
OS=Caenorhabditis elegans GN=aha-1 PE=1 SV=1
Length = 453
Score = 84.3 bits (207), Expect = 2e-16, Method: Composition-based stats.
Identities = 51/104 (49%), Positives = 66/104 (63%), Gaps = 19/104 (18%)
Query: 9 GNTSTDGT-YKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTG------LGLPCSDS 61
G+T+ D T YKPSFLTDQELKHLILEAA+GFLFVV C TG+V+ L L D
Sbjct: 99 GHTAQDETSYKPSFLTDQELKHLILEAANGFLFVVCCQTGKVLYVADSITPVLNLKQEDW 158
Query: 62 V-----------DIEKVREQLSTQEPQNAGRILDLKTGTVKKEG 94
+ D +K+R+QL E + ++LDLK+G+VK+EG
Sbjct: 159 LQRNLNELIHPDDQDKIRDQLCGSE-VSVNKVLDLKSGSVKREG 201
>sp|Q9WTL8|BMAL1_MOUSE Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Mus musculus GN=Arntl PE=1 SV=2
Length = 632
Score = 73.9 bits (180), Expect = 3e-13, Method: Composition-based stats.
Identities = 42/96 (43%), Positives = 55/96 (57%), Gaps = 17/96 (17%)
Query: 10 NTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTG--------------LG 55
N T+ YKP+FL+D ELKHLIL AADGFLFVV CD G+++ +G
Sbjct: 137 NPYTEANYKPTFLSDDELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIG 196
Query: 56 LPCSDSV---DIEKVREQLSTQEPQNAGRILDLKTG 88
D + DI KV+EQLS+ + R++D KTG
Sbjct: 197 QSLFDYLHPKDIAKVKEQLSSSDTAPRERLIDAKTG 232
>sp|A0MLS5|BMAL1_HORSE Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Equus caballus GN=ARNTL PE=2 SV=1
Length = 626
Score = 73.9 bits (180), Expect = 3e-13, Method: Composition-based stats.
Identities = 42/96 (43%), Positives = 55/96 (57%), Gaps = 17/96 (17%)
Query: 10 NTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTG--------------LG 55
N T+ YKP+FL+D ELKHLIL AADGFLFVV CD G+++ +G
Sbjct: 130 NPYTEANYKPTFLSDDELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIG 189
Query: 56 LPCSDSV---DIEKVREQLSTQEPQNAGRILDLKTG 88
D + DI KV+EQLS+ + R++D KTG
Sbjct: 190 QSLFDYLHPKDIAKVKEQLSSSDTAPRERLIDAKTG 225
>sp|O88529|BMAL1_MESAU Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Mesocricetus auratus GN=ARNTL PE=2 SV=1
Length = 626
Score = 73.9 bits (180), Expect = 3e-13, Method: Composition-based stats.
Identities = 42/96 (43%), Positives = 55/96 (57%), Gaps = 17/96 (17%)
Query: 10 NTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTG--------------LG 55
N T+ YKP+FL+D ELKHLIL AADGFLFVV CD G+++ +G
Sbjct: 130 NPYTEANYKPTFLSDDELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIG 189
Query: 56 LPCSDSV---DIEKVREQLSTQEPQNAGRILDLKTG 88
D + DI KV+EQLS+ + R++D KTG
Sbjct: 190 QSLFDYLHPKDIAKVKEQLSSSDTAPRERLIDAKTG 225
>sp|O00327|BMAL1_HUMAN Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Homo sapiens GN=ARNTL PE=1 SV=2
Length = 626
Score = 73.9 bits (180), Expect = 3e-13, Method: Composition-based stats.
Identities = 42/96 (43%), Positives = 55/96 (57%), Gaps = 17/96 (17%)
Query: 10 NTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTG--------------LG 55
N T+ YKP+FL+D ELKHLIL AADGFLFVV CD G+++ +G
Sbjct: 130 NPYTEANYKPTFLSDDELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIG 189
Query: 56 LPCSDSV---DIEKVREQLSTQEPQNAGRILDLKTG 88
D + DI KV+EQLS+ + R++D KTG
Sbjct: 190 QSLFDYLHPKDIAKVKEQLSSSDTAPRERLIDAKTG 225
>sp|Q5R4T2|BMAL1_PONAB Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Pongo abelii GN=ARNTL PE=2 SV=1
Length = 625
Score = 73.9 bits (180), Expect = 3e-13, Method: Composition-based stats.
Identities = 42/96 (43%), Positives = 55/96 (57%), Gaps = 17/96 (17%)
Query: 10 NTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTG--------------LG 55
N T+ YKP+FL+D ELKHLIL AADGFLFVV CD G+++ +G
Sbjct: 130 NPYTEANYKPTFLSDDELKHLILRAADGFLFVVGCDRGKILFVSESAFKILNYSQNDLIG 189
Query: 56 LPCSDSV---DIEKVREQLSTQEPQNAGRILDLKTG 88
D + DI KV+EQLS+ + R++D KTG
Sbjct: 190 QSLFDYLHPKDIAKVKEQLSSSDTAPRERLIDAKTG 225
>sp|Q9I8T7|BMAL1_CHICK Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Gallus gallus GN=ARNTL PE=1 SV=1
Length = 633
Score = 73.6 bits (179), Expect = 3e-13, Method: Composition-based stats.
Identities = 42/96 (43%), Positives = 55/96 (57%), Gaps = 17/96 (17%)
Query: 10 NTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTG--------------LG 55
N T+ YKP+FL+D ELKHLIL AADGFLFVV CD G+++ +G
Sbjct: 137 NPYTEANYKPAFLSDDELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIG 196
Query: 56 LPCSDSV---DIEKVREQLSTQEPQNAGRILDLKTG 88
D + DI KV+EQLS+ + R++D KTG
Sbjct: 197 QSLFDYLHPKDIAKVKEQLSSSDTAPRERLIDAKTG 232
>sp|Q6YGZ5|BMAL1_TYTAL Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Tyto alba GN=ARNTL PE=2 SV=1
Length = 633
Score = 73.6 bits (179), Expect = 3e-13, Method: Composition-based stats.
Identities = 42/96 (43%), Positives = 55/96 (57%), Gaps = 17/96 (17%)
Query: 10 NTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTG--------------LG 55
N T+ YKP+FL+D ELKHLIL AADGFLFVV CD G+++ +G
Sbjct: 137 NPYTEANYKPAFLSDDELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIG 196
Query: 56 LPCSDSV---DIEKVREQLSTQEPQNAGRILDLKTG 88
D + DI KV+EQLS+ + R++D KTG
Sbjct: 197 QSLFDYLHPKDIAKVKEQLSSSDTAPRERLIDAKTG 232
>sp|Q91YA9|BMAL1_NANGA Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Nannospalax galili GN=Arntl PE=1 SV=1
Length = 626
Score = 73.6 bits (179), Expect = 3e-13, Method: Composition-based stats.
Identities = 42/96 (43%), Positives = 55/96 (57%), Gaps = 17/96 (17%)
Query: 10 NTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTG--------------LG 55
N T+ YKP+FL+D ELKHLIL AADGFLFVV CD G+++ +G
Sbjct: 130 NPYTEANYKPTFLSDDELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIG 189
Query: 56 LPCSDSV---DIEKVREQLSTQEPQNAGRILDLKTG 88
D + DI KV+EQLS+ + R++D KTG
Sbjct: 190 QSLFDYLHPKDIAKVKEQLSSSDTAPRERLIDAKTG 225
>sp|Q9EPW1|BMAL1_RAT Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Rattus norvegicus GN=Arntl PE=2 SV=4
Length = 626
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 41/96 (42%), Positives = 54/96 (56%), Gaps = 17/96 (17%)
Query: 10 NTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTG--------------LG 55
N T+ YKP+ L+D ELKHLIL AADGFLFVV CD G+++ +G
Sbjct: 130 NPYTEANYKPTSLSDDELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIG 189
Query: 56 LPCSDSV---DIEKVREQLSTQEPQNAGRILDLKTG 88
D + DI KV+EQLS+ + R++D KTG
Sbjct: 190 QSLFDYLHPKDIAKVKEQLSSSDTAPRERLIDAKTG 225
>sp|O61734|CYCL_DROME Protein cycle OS=Drosophila melanogaster GN=cyc PE=2 SV=2
Length = 413
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 41/94 (43%), Positives = 52/94 (55%), Gaps = 29/94 (30%)
Query: 17 YKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTGLGLPCSDSV-------------- 62
Y+PSFL+DQELK +IL+A++GFLFVV CD GR+ L SDSV
Sbjct: 97 YRPSFLSDQELKMIILQASEGFLFVVGCDRGRI------LYVSDSVSSVLNSTQADLLGQ 150
Query: 63 ---------DIEKVREQLSTQEPQNAGRILDLKT 87
DI KV+EQLS+ E R++D KT
Sbjct: 151 SWFDVLHPKDIGKVKEQLSSLEQCPRERLIDAKT 184
>sp|Q8QGQ7|BMAL2_CHICK Aryl hydrocarbon receptor nuclear translocator-like protein 2
OS=Gallus gallus GN=ARNTL2 PE=1 SV=1
Length = 622
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 56/99 (56%), Gaps = 19/99 (19%)
Query: 9 GNTS--TDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTG------------- 53
G+TS T+ YKPSFL D EL+ LIL AADGFLFVV C+ G+++
Sbjct: 147 GSTSSYTEVRYKPSFLKDDELRQLILRAADGFLFVVGCNRGKILFVSESVCKILNYDQTS 206
Query: 54 -LGLPCSDSV---DIEKVREQLSTQEPQNAGRILDLKTG 88
+G D + D+ KV+EQLS+ + +++D KTG
Sbjct: 207 LIGQSLFDYLHPKDVAKVKEQLSSSDVSPREKLVDGKTG 245
>sp|Q8WYA1|BMAL2_HUMAN Aryl hydrocarbon receptor nuclear translocator-like protein 2
OS=Homo sapiens GN=ARNTL2 PE=1 SV=2
Length = 636
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 53/96 (55%), Gaps = 17/96 (17%)
Query: 10 NTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVV----------------VTG 53
N+ Y+PSFL D EL+HLIL+ A+GFLFVV C+ G+++ +TG
Sbjct: 165 NSYVGSNYRPSFLQDNELRHLILKTAEGFLFVVGCERGKILFVSKSVSKILNYDQASLTG 224
Query: 54 LGL-PCSDSVDIEKVREQLSTQEPQNAGRILDLKTG 88
L D+ KV+EQLS+ + +++D KTG
Sbjct: 225 QSLFDFLHPKDVAKVKEQLSSFDISPREKLIDAKTG 260
>sp|Q2VPD4|BMAL2_MOUSE Aryl hydrocarbon receptor nuclear translocator-like protein 2
OS=Mus musculus GN=Arntl2 PE=2 SV=2
Length = 579
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 41/72 (56%), Gaps = 17/72 (23%)
Query: 18 KPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTG--------------LGLPCSDSV- 62
KPSF+ D+EL HLIL+AA+GFLFVV C+ GR+ +G D +
Sbjct: 114 KPSFIQDKELSHLILKAAEGFLFVVGCERGRIFYVSKSVSKTLRYDQASLIGQNLFDFLH 173
Query: 63 --DIEKVREQLS 72
D+ KV+EQLS
Sbjct: 174 PKDVAKVKEQLS 185
>sp|P97460|NPAS2_MOUSE Neuronal PAS domain-containing protein 2 OS=Mus musculus GN=Npas2
PE=1 SV=1
Length = 816
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 17 YKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVT 52
+KPSFL+++E L+LEA DGF+ VV D + V+
Sbjct: 75 WKPSFLSNEEFTQLMLEALDGFVIVVTTDGSIIYVS 110
>sp|Q99743|NPAS2_HUMAN Neuronal PAS domain-containing protein 2 OS=Homo sapiens GN=NPAS2
PE=2 SV=3
Length = 824
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 17 YKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVT 52
+KPSFL+++E L+LEA DGF+ V D + V+
Sbjct: 75 WKPSFLSNEEFTQLMLEALDGFIIAVTTDGSIIYVS 110
>sp|Q8QGQ6|CLOCK_CHICK Circadian locomoter output cycles protein kaput OS=Gallus gallus
GN=CLOCK PE=1 SV=2
Length = 875
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 17 YKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVT 52
+KP+FL+++E L+LEA DGF + D + V+
Sbjct: 100 WKPTFLSNEEFTQLMLEALDGFFLAIMTDGNIIYVS 135
>sp|Q6YGZ4|CLOCK_TYTAL Circadian locomoter output cycles protein kaput OS=Tyto alba
GN=CLOCK PE=2 SV=1
Length = 851
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 17 YKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVT 52
+KP+FL+++E L+LEA DGF + D + V+
Sbjct: 100 WKPTFLSNEEFTQLMLEALDGFFLAIMTDGNIIYVS 135
>sp|O15516|CLOCK_HUMAN Circadian locomoter output cycles protein kaput OS=Homo sapiens
GN=CLOCK PE=1 SV=1
Length = 846
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 17 YKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVT 52
+KP+FL+++E L+LEA DGF + D + V+
Sbjct: 100 WKPTFLSNEEFTQLMLEALDGFFLAIMTDGSIIYVS 135
>sp|Q5RAK8|CLOCK_PONAB Circadian locomoter output cycles protein kaput OS=Pongo abelii
GN=CLOCK PE=2 SV=1
Length = 846
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 17 YKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVT 52
+KP+FL+++E L+LEA DGF + D + V+
Sbjct: 100 WKPTFLSNEEFTQLMLEALDGFFLAIMTDGSIIYVS 135
>sp|Q91YA8|CLOCK_SPAJD Circadian locomoter output cycles protein kaput OS=Spalax judaei
GN=Clock PE=2 SV=1
Length = 865
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 17 YKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVT 52
+KP+FL+++E L+LEA DGF + D + V+
Sbjct: 100 WKPTFLSNEEFTQLMLEALDGFFLAIMTDGSIIYVS 135
>sp|Q91YB0|CLOCK_NANGA Circadian locomoter output cycles protein kaput OS=Nannospalax
galili GN=Clock PE=1 SV=1
Length = 865
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 17 YKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVT 52
+KP+FL+++E L+LEA DGF + D + V+
Sbjct: 100 WKPTFLSNEEFTQLMLEALDGFFLAIMTDGSIIYVS 135
>sp|Q9WVS9|CLOCK_RAT Circadian locomoter output cycles protein kaput OS=Rattus
norvegicus GN=Clock PE=2 SV=1
Length = 862
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 17 YKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVT 52
+KP+FL+++E L+LEA DGF + D + V+
Sbjct: 100 WKPTFLSNEEFTQLMLEALDGFFLAIMTDGSIIYVS 135
>sp|Q91YB2|CLOCK_SPACA Circadian locomoter output cycles protein kaput OS=Spalax carmeli
GN=Clock PE=2 SV=1
Length = 865
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 17 YKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVT 52
+KP+FL+++E L+LEA DGF + D + V+
Sbjct: 100 WKPTFLSNEEFTQLMLEALDGFFLAIMTDGSIIYVS 135
>sp|O08785|CLOCK_MOUSE Circadian locomoter output cycles protein kaput OS=Mus musculus
GN=Clock PE=1 SV=1
Length = 855
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 17 YKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVT 52
+KP+FL+++E L+LEA DGF + D + V+
Sbjct: 100 WKPTFLSNEEFTQLMLEALDGFFLAIMTDGSIIYVS 135
>sp|Q5ZQU2|NPAS2_CHICK Neuronal PAS domain-containing protein 2 OS=Gallus gallus GN=NPAS2
PE=2 SV=1
Length = 815
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 6/48 (12%)
Query: 17 YKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTG-----LG-LPC 58
+KPSFL+++E L+LEA DGF+ V + V+ LG LPC
Sbjct: 75 WKPSFLSNEEFTQLMLEALDGFIIAVTTGGSIIYVSDSITPLLGHLPC 122
>sp|O61735|CLOCK_DROME Circadian locomoter output cycles protein kaput OS=Drosophila
melanogaster GN=Clk PE=2 SV=3
Length = 1027
Score = 36.2 bits (82), Expect = 0.055, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 3 ESQERTGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVA 43
E+ +R+ +KP+FL++ E HL+LE+ DGF+ V +
Sbjct: 67 EATDRSKVFEIQQDWKPAFLSNDEYTHLMLESLDGFMMVFS 107
>sp|Q4PJW2|NCOA1_PIG Nuclear receptor coactivator 1 OS=Sus scrofa GN=NCOA1 PE=2 SV=1
Length = 1440
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 25 QELKHLILEAADGFLFVVACDTGRVV 50
+ L L+LEA DGF FVV C+ GR+V
Sbjct: 110 ESLGPLLLEALDGFFFVVNCE-GRIV 134
>sp|Q15788|NCOA1_HUMAN Nuclear receptor coactivator 1 OS=Homo sapiens GN=NCOA1 PE=1 SV=3
Length = 1441
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 25 QELKHLILEAADGFLFVVACDTGRVV 50
+ L L+LEA DGF FVV C+ GR+V
Sbjct: 110 ESLGPLLLEALDGFFFVVNCE-GRIV 134
>sp|P70365|NCOA1_MOUSE Nuclear receptor coactivator 1 OS=Mus musculus GN=Ncoa1 PE=1 SV=2
Length = 1447
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 25 QELKHLILEAADGFLFVVACDTGRVV 50
+ L L+LEA DGF FVV C+ GR+V
Sbjct: 110 ESLGPLLLEALDGFFFVVNCE-GRIV 134
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.132 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,334,277
Number of Sequences: 539616
Number of extensions: 1316529
Number of successful extensions: 2249
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2187
Number of HSP's gapped (non-prelim): 43
length of query: 96
length of database: 191,569,459
effective HSP length: 66
effective length of query: 30
effective length of database: 155,954,803
effective search space: 4678644090
effective search space used: 4678644090
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)