Query psy4919
Match_columns 96
No_of_seqs 103 out of 248
Neff 4.3
Searched_HMMs 29240
Date Fri Aug 16 21:10:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4919.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4919hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f3l_B BMAL1B; BHLH, PAS, circ 99.8 1.2E-20 4.1E-25 147.5 5.4 92 3-94 63-172 (387)
2 4dj2_A Period circadian protei 99.7 3.7E-17 1.3E-21 127.2 4.8 61 14-74 10-91 (320)
3 4dj3_A Period circadian protei 99.5 1.5E-15 5.1E-20 118.0 2.8 61 12-72 8-89 (317)
4 4f3l_A Mclock, circadian locom 99.5 2.2E-14 7.5E-19 110.5 5.8 65 10-75 70-151 (361)
5 3gdi_A Period circadian protei 99.3 4E-13 1.4E-17 103.9 3.1 46 28-73 17-79 (309)
6 3rty_A Period circadian protei 98.6 2.3E-08 7.7E-13 78.1 4.9 43 35-77 2-61 (339)
7 2vlg_A Sporulation kinase A; h 98.5 5E-08 1.7E-12 63.6 2.6 44 29-73 2-62 (111)
8 3f1p_B ARYL hydrocarbon recept 97.4 5.4E-05 1.8E-09 46.4 1.8 45 26-71 2-63 (121)
9 3f1p_A Endothelial PAS domain- 95.9 0.0041 1.4E-07 37.4 2.4 34 37-71 10-60 (117)
10 2kdk_A ARYL hydrocarbon recept 95.1 0.034 1.2E-06 33.2 4.4 37 34-71 11-64 (121)
11 3icy_A Sensor protein; sensory 94.9 0.018 6.2E-07 33.6 2.7 46 25-71 3-67 (118)
12 3luq_A Sensor protein; PAS, hi 94.4 0.083 2.8E-06 30.2 4.7 32 28-60 5-42 (114)
13 3nja_A Probable ggdef family p 92.4 0.26 8.8E-06 28.4 4.6 42 29-71 10-70 (125)
14 3mr0_A Sensory box histidine k 92.0 0.24 8.3E-06 31.0 4.4 43 28-71 11-72 (142)
15 3rty_A Period circadian protei 91.6 0.1 3.5E-06 40.4 2.7 34 36-70 154-204 (339)
16 3eeh_A Putative light and redo 91.3 0.13 4.4E-06 29.3 2.4 44 27-71 12-75 (125)
17 3olo_A Two-component sensor hi 90.7 0.19 6.4E-06 29.1 2.7 32 28-60 15-52 (118)
18 4dj2_A Period circadian protei 90.7 0.12 4.2E-06 39.7 2.3 35 36-71 176-227 (320)
19 4f3l_B BMAL1B; BHLH, PAS, circ 90.4 0.12 4E-06 40.0 2.1 35 36-71 278-329 (387)
20 3mjq_A Uncharacterized protein 90.4 0.12 4.1E-06 30.2 1.7 29 31-60 4-38 (126)
21 3bwl_A Sensor protein; structu 90.3 0.36 1.2E-05 28.7 3.9 30 30-60 21-56 (126)
22 2gj3_A Nitrogen fixation regul 90.2 0.45 1.6E-05 28.5 4.2 30 30-60 9-44 (120)
23 3h9w_A Diguanylate cyclase wit 90.0 0.32 1.1E-05 28.8 3.4 33 39-71 6-56 (115)
24 3gdi_A Period circadian protei 90.0 0.13 4.5E-06 39.3 2.0 33 38-71 167-216 (309)
25 4f3l_A Mclock, circadian locom 89.8 0.14 4.9E-06 38.9 2.1 35 36-71 251-302 (361)
26 2r78_A Sensor protein; sensory 88.9 0.3 1E-05 29.6 2.7 32 27-60 13-50 (117)
27 2ool_A Sensor protein; bacteri 88.4 0.37 1.2E-05 37.7 3.5 40 36-75 42-98 (337)
28 4dj3_A Period circadian protei 88.2 0.14 4.9E-06 39.3 1.1 33 37-70 175-224 (317)
29 3lyx_A Sensory BOX/ggdef domai 87.1 0.59 2E-05 26.1 3.0 35 25-60 6-46 (124)
30 1d06_A Nitrogen fixation regul 86.1 0.61 2.1E-05 28.3 2.9 30 30-60 20-55 (130)
31 4hia_A LOV protein; PAS, HTH, 84.1 0.82 2.8E-05 28.9 2.9 31 29-60 10-49 (176)
32 3fc7_A HTR-like protein, senso 81.7 0.35 1.2E-05 28.3 0.4 35 25-60 18-58 (125)
33 3b33_A Sensor protein; structu 81.6 1.6 5.6E-05 25.3 3.4 33 27-60 8-46 (115)
34 1ll8_A PAS kinase; PAS domain, 81.6 1.4 4.7E-05 26.0 3.1 21 39-60 11-38 (114)
35 2z6d_A Phototropin-2; PAS-fold 80.9 2.5 8.6E-05 23.5 3.9 30 29-59 9-47 (130)
36 3k3c_A Protein RV1364C/MT1410; 78.0 4.4 0.00015 24.8 4.7 40 16-57 8-54 (158)
37 4eet_B Phototropin-2; LOV, blu 77.5 0.91 3.1E-05 25.6 1.3 29 32-60 3-39 (115)
38 3mqq_A Transcriptional regulat 77.0 1 3.5E-05 26.7 1.5 30 28-60 6-41 (120)
39 3p7n_A Sensor histidine kinase 76.6 2.5 8.7E-05 28.9 3.6 32 29-60 66-105 (258)
40 3ue6_A Aureochrome1; PAS/LOV d 76.5 1.8 6.2E-05 26.5 2.6 32 29-60 38-77 (166)
41 2vv6_A FIXL, sensor protein FI 75.7 2 6.8E-05 25.4 2.5 21 39-60 6-32 (119)
42 3sw1_A Sensory box protein; li 75.2 3.3 0.00011 25.3 3.5 38 22-60 21-67 (162)
43 3mxq_A Sensor protein; PSI2, M 74.6 5.9 0.0002 26.5 5.0 31 29-60 25-61 (152)
44 1v9y_A Heme PAS sensor protein 74.0 2.8 9.5E-05 25.4 2.9 31 29-60 43-79 (167)
45 3mfx_A Sensory BOX/ggdef famil 71.9 2.4 8.1E-05 27.2 2.3 29 31-60 12-46 (129)
46 3ewk_A Sensor protein; PAS dom 71.6 3.5 0.00012 27.8 3.2 29 31-60 116-150 (227)
47 3o2i_A Uncharacterized protein 71.2 2.1 7.2E-05 29.5 2.0 20 16-35 45-64 (125)
48 2w0n_A Sensor protein DCUS; si 68.9 2.8 9.5E-05 23.8 2.0 28 28-56 17-50 (118)
49 3kx0_X Uncharacterized protein 68.4 9.4 0.00032 24.7 4.8 40 16-57 28-74 (185)
50 3s7o_A Bacteriophytochrome; bi 67.4 4.5 0.00016 31.9 3.5 39 36-75 52-107 (343)
51 3t50_A Blue-light-activated hi 66.2 0.96 3.3E-05 26.5 -0.5 27 34-60 5-39 (128)
52 3u7d_B Protein HEG homolog 1; 64.4 1.7 6E-05 22.7 0.4 13 14-26 8-20 (26)
53 2pr5_A Blue-light photorecepto 63.6 1.5 5.2E-05 26.5 0.1 29 31-60 4-41 (132)
54 3a0s_A Sensor protein; PAS-fol 62.2 7.2 0.00025 20.5 2.8 21 39-60 5-31 (96)
55 4g2e_A Peroxiredoxin; redox pr 62.0 7.9 0.00027 25.3 3.4 32 39-71 122-153 (157)
56 2v0u_A NPH1-1, LOV2; kinase, t 60.2 2.8 9.6E-05 24.0 0.8 30 31-60 7-44 (146)
57 4e04_A Bacteriophytochrome (li 60.0 4.1 0.00014 31.8 2.0 39 36-75 29-84 (327)
58 4eho_A Bacteriophytochrome, PA 57.0 11 0.00037 31.0 4.1 40 29-70 522-578 (635)
59 3fg8_A Uncharacterized protein 56.8 1.6 5.4E-05 26.3 -0.8 29 31-60 17-51 (118)
60 1n9l_A PHOT-LOV1, putative blu 54.6 4.3 0.00015 24.0 1.0 15 46-60 15-35 (109)
61 3ewk_A Sensor protein; PAS dom 53.0 5.6 0.00019 26.8 1.5 21 39-60 2-28 (227)
62 3gl3_A Putative thiol:disulfid 51.7 24 0.00082 21.8 4.3 32 39-71 109-140 (152)
63 4gqc_A Thiol peroxidase, perox 51.1 20 0.00068 23.7 4.0 28 39-67 124-151 (164)
64 3d72_A Vivid PAS protein VVD; 50.3 5.7 0.0002 23.9 1.1 27 32-60 32-67 (149)
65 2jhe_A Transcription regulator 47.3 27 0.00093 22.3 4.1 32 27-59 81-118 (190)
66 2l0w_A Potassium voltage-gated 46.9 33 0.0011 19.1 4.0 25 29-53 19-48 (138)
67 3a0r_A Sensor protein; four he 44.2 5.3 0.00018 28.3 0.3 30 30-60 12-47 (349)
68 3p7x_A Probable thiol peroxida 43.0 28 0.00095 22.5 3.7 32 39-71 132-163 (166)
69 4dah_A Sporulation kinase D; a 42.5 38 0.0013 22.5 4.4 28 25-53 150-178 (217)
70 4eho_A Bacteriophytochrome, PA 41.5 14 0.00049 30.2 2.5 18 36-53 34-51 (635)
71 3zq5_A Phytochrome-like protei 41.3 16 0.00055 30.1 2.7 25 36-60 29-59 (520)
72 2jsy_A Probable thiol peroxida 40.2 26 0.0009 22.3 3.2 21 39-60 131-151 (167)
73 1byw_A Protein (human ERG pota 40.2 11 0.00037 20.1 1.1 8 46-53 13-20 (110)
74 3zrd_A Thiol peroxidase; oxido 38.9 33 0.0011 23.4 3.7 32 39-71 168-199 (200)
75 4hi4_A Aerotaxis transducer AE 38.2 24 0.00084 20.9 2.6 22 31-53 10-31 (121)
76 3kcm_A Thioredoxin family prot 37.7 44 0.0015 20.6 3.9 35 38-73 109-143 (154)
77 3vol_A Aerotaxis transducer AE 37.1 29 0.00099 24.1 3.2 22 31-53 27-48 (233)
78 1q98_A Thiol peroxidase, TPX; 36.0 36 0.0012 22.0 3.4 33 38-71 132-164 (165)
79 1psq_A Probable thiol peroxida 35.6 43 0.0015 21.5 3.7 33 38-71 128-160 (163)
80 2qkp_A Uncharacterized protein 33.6 60 0.002 21.2 4.2 31 21-53 15-45 (151)
81 3nhq_A Bacteriophytochrome; ph 31.8 24 0.00082 28.9 2.3 38 36-74 26-79 (505)
82 2wkq_A NPH1-1, RAS-related C3 30.4 13 0.00043 26.3 0.4 28 32-60 17-53 (332)
83 1xvw_A Hypothetical protein RV 29.6 71 0.0024 19.9 3.9 31 39-71 125-155 (160)
84 3ub6_A Chemoreceptor TLPB; hom 28.5 80 0.0027 21.6 4.3 31 22-53 47-85 (181)
85 1wi9_A Protein C20ORF116 homol 27.8 27 0.00092 22.1 1.6 21 32-53 45-65 (72)
86 3me7_A Putative uncharacterize 25.8 97 0.0033 20.1 4.2 37 38-76 129-166 (170)
87 1wzz_A Probable endoglucanase; 25.7 11 0.00038 29.0 -0.6 35 61-95 16-51 (334)
88 1xvq_A Thiol peroxidase; thior 25.0 84 0.0029 20.4 3.8 32 38-70 131-162 (175)
89 2yzh_A Probable thiol peroxida 24.7 60 0.002 20.9 2.9 19 38-57 135-153 (171)
90 2a4v_A Peroxiredoxin DOT5; yea 23.3 40 0.0014 21.4 1.8 32 38-71 120-153 (159)
91 2gx5_A GTP-sensing transcripti 21.7 1.4E+02 0.0048 21.1 4.6 33 20-53 30-62 (170)
92 3ajb_B Peroxisomal biogenesis 21.0 28 0.00097 20.6 0.6 15 24-38 20-34 (49)
93 3c8c_A Methyl-accepting chemot 20.8 60 0.002 21.1 2.3 29 24-53 144-175 (240)
94 1xzo_A BSSCO, hypothetical pro 20.7 1.3E+02 0.0044 18.8 3.9 26 39-65 139-164 (174)
95 1jfu_A Thiol:disulfide interch 20.4 1.5E+02 0.0053 18.9 4.3 28 38-66 146-173 (186)
96 3by9_A Sensor protein; histidi 20.1 59 0.002 21.8 2.2 18 35-53 162-179 (260)
No 1
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.81 E-value=1.2e-20 Score=147.53 Aligned_cols=92 Identities=48% Similarity=0.790 Sum_probs=61.8
Q ss_pred cccccCCCCCCCCCCCCCCCChHHHHHHHHHhhcccEEEEecCCCcEEEEc------cCCCCCC-----------chhHH
Q psy4919 3 ESQERTGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTG------LGLPCSD-----------SVDIE 65 (96)
Q Consensus 3 k~~rg~~~~~~~~~~kPsfls~~el~~l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d-----------p~D~~ 65 (96)
|.++|..+...+.+|+|+|++++|+.+++++|+|||++|+++++|+|+||| |||+|.| |+|++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~gfi~v~~~~~G~i~yvs~~~~~~lG~~~~el~g~~~~~~ihp~D~~ 142 (387)
T 4f3l_B 63 KTLRGATNPYTEANYKPTFLSDDELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIGQSLFDYLHPKDIA 142 (387)
T ss_dssp HHHHCC------CCSSCTTSCHHHHHHHHHHTCCSEEEEEETTTCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHH
T ss_pred HHhhcccccccccccCcccCCHHHHHHHHHhcCCCEEEEEecCCeEEEEEchhhHHHcCCCHHHHCCCcHHHhcCCCCHH
Confidence 456677777778899999999999999999999999999999559999999 9999988 99999
Q ss_pred HHHHHhCCCCCCCcccccccccc-eeeccC
Q psy4919 66 KVREQLSTQEPQNAGRILDLKTG-TVKKEG 94 (96)
Q Consensus 66 e~~eqL~~~~~~~~~r~~d~kt~-~~~~~~ 94 (96)
+++++|+.+...|++|.+|++|| +++++.
T Consensus 143 ~~~~~L~~~~~~p~~~~~~~~tg~~~~~e~ 172 (387)
T 4f3l_B 143 KVKEQLSSSDTAPRERLIDAKTGLPVKTDI 172 (387)
T ss_dssp HHHHHHSCC---------------------
T ss_pred HHHHHhcccccCccccccCcccCCccCCCC
Confidence 99999999988999999999999 466554
No 2
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=99.66 E-value=3.7e-17 Score=127.23 Aligned_cols=61 Identities=25% Similarity=0.237 Sum_probs=54.1
Q ss_pred CCCCCCCCCChHHHHHH----HHHhhcccEEEEecCCCcEEEEc------cCCCCCC-----------chhHHHHHHHhC
Q psy4919 14 DGTYKPSFLTDQELKHL----ILEAADGFLFVVACDTGRVVVTG------LGLPCSD-----------SVDIEKVREQLS 72 (96)
Q Consensus 14 ~~~~kPsfls~~el~~l----~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d-----------p~D~~e~~eqL~ 72 (96)
-+..+++|+|++||++| +|||||||++||++++|+|+||| |||+|.| |+||++|++||.
T Consensus 10 ~~~~~~~~~s~eel~~l~~e~lLqaldGF~~vvs~~~G~i~yvS~sv~~~Lg~~~~~l~g~s~~d~iHp~D~~~f~~qL~ 89 (320)
T 4dj2_A 10 PCAMDMSTYTLEELEHITSEYTLRNQDTFSVAVSFLTGRIVYISEQAGVLLRCKRDVFRGARFSELLAPQDVGVFYGSTT 89 (320)
T ss_dssp ----CCSEECHHHHHHHHHHHTTSCSSEEEEEEETTTCBEEEECTHHHHHHTSCSTTTTTSBGGGGBCHHHHHHHHHHCC
T ss_pred CcccCccccCHHHHHHHHHHHHHhccCCEEEEEECCCceEEEECcHHHHHhCcCHHHHcCCcHHHhcCHHHHHHHHHhhc
Confidence 35568999999999999 59999999999999679999999 9999999 999999999998
Q ss_pred CC
Q psy4919 73 TQ 74 (96)
Q Consensus 73 ~~ 74 (96)
..
T Consensus 90 ~~ 91 (320)
T 4dj2_A 90 PS 91 (320)
T ss_dssp TT
T ss_pred cc
Confidence 64
No 3
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=99.54 E-value=1.5e-15 Score=118.04 Aligned_cols=61 Identities=16% Similarity=0.138 Sum_probs=55.6
Q ss_pred CCCCCCCCCCCChHHHHHH----HHHhhcccEEEEecCCCcEEEEc------cCCCCCC-----------chhHHHHHHH
Q psy4919 12 STDGTYKPSFLTDQELKHL----ILEAADGFLFVVACDTGRVVVTG------LGLPCSD-----------SVDIEKVREQ 70 (96)
Q Consensus 12 ~~~~~~kPsfls~~el~~l----~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d-----------p~D~~e~~eq 70 (96)
+....-.++|+|++||.++ +|||||||++||++++|+|+||| |||+|.| |+|++++++|
T Consensus 8 ~~~~~~~~~~~s~~el~~~~~e~~L~aldgF~~vvs~~~G~i~yvS~~~~~~Lg~~~~el~g~s~~d~ihp~D~~~f~~q 87 (317)
T 4dj3_A 8 FPGRLEDVTVYSLEDLTALASEHTSKNTDTFAAVFSFLSGRLVHISEQAALILNSKRGFLKSVHFVDLLAPQDVRAFYAH 87 (317)
T ss_dssp --CCCCCCCBCCTTTTTSTTHHHHTSCTTEEEEEEETTTCBEEEECTTHHHHTTCCHHHHHTSBGGGGBCGGGHHHHHHH
T ss_pred CCCCccCccccCHHHHHhhhhHHHHhccCCEEEEEEcCCcEEEEECCHHHHHcCCCHHHHcCCchhhhcChhhHHHHHHh
Confidence 4567778999999999999 99999999999999669999999 9999988 9999999999
Q ss_pred hC
Q psy4919 71 LS 72 (96)
Q Consensus 71 L~ 72 (96)
|+
T Consensus 88 l~ 89 (317)
T 4dj3_A 88 TA 89 (317)
T ss_dssp TC
T ss_pred hc
Confidence 94
No 4
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.49 E-value=2.2e-14 Score=110.51 Aligned_cols=65 Identities=31% Similarity=0.515 Sum_probs=60.0
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHhhcccEEEEecCCCcEEEEc------cCCCCCC-----------chhHHHHHHHhC
Q psy4919 10 NTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVVTG------LGLPCSD-----------SVDIEKVREQLS 72 (96)
Q Consensus 10 ~~~~~~~~kPsfls~~el~~l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d-----------p~D~~e~~eqL~ 72 (96)
+++...+|+|+|++++++.+++++|+|||++|+++ +|+|+||| |||++.| |+|+++++++|.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~i~v~~~-~G~i~yvs~~~~~~lGy~~~el~g~~~~~~ihp~D~~~~~~~l~ 148 (361)
T 4f3l_A 70 ASEIRQDWKPTFLSNEEFTQLMLEALDGFFLAIMT-DGSIIYVSESVTSLLEHLPSDLVDQSIFNFIPEGEHSEVYKILS 148 (361)
T ss_dssp CGGGTSCCSCTTSCHHHHHHHHHHHTTEEEEEEET-TSBEEEECTTHHHHHCCCHHHHTTSBGGGGSCGGGHHHHHHHHH
T ss_pred ccccccccCcccccHHHHHHHHHHhcCceEEEEcC-CccEEEEechhhhhcCCCHHHhcCCcHHHhcCHHHHHHHHHHhc
Confidence 34567899999999999999999999999999998 99999999 9999988 999999999998
Q ss_pred CCC
Q psy4919 73 TQE 75 (96)
Q Consensus 73 ~~~ 75 (96)
...
T Consensus 149 ~~~ 151 (361)
T 4f3l_A 149 THL 151 (361)
T ss_dssp HCC
T ss_pred cCC
Confidence 754
No 5
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=99.33 E-value=4e-13 Score=103.89 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=33.8
Q ss_pred HHHHHHhhcccEEEEecCCCcEEEEc------cCCCCCC-----------chhHHHHHHHhCC
Q psy4919 28 KHLILEAADGFLFVVACDTGRVVVTG------LGLPCSD-----------SVDIEKVREQLST 73 (96)
Q Consensus 28 ~~l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d-----------p~D~~e~~eqL~~ 73 (96)
++++|||||||++||++++|+|+||| |||+|+| |+||+++++||..
T Consensus 17 ~~lll~a~dgF~~vvs~~~G~i~yvS~s~~~~Lg~~~~el~g~s~~d~iHp~D~~~~~~~L~~ 79 (309)
T 3gdi_A 17 SEYIVKNADMFAVAVSLVSGKILYISNQVASIFHCKKDAFSDAKFVEFLAPHDVSVFHSYTTP 79 (309)
T ss_dssp CC----CTTEEEEEECTTTCBEEEECTTTTTTC-------CCSBGGGGBCTTTHHHHHHHTCT
T ss_pred HHHHHHhcCCEEEEEECCCceEEEECCHHHHHcCCCHHHHcCCchhhccCHhHHHHHHHhccc
Confidence 67999999999999999669999999 9999999 9999999999975
No 6
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=98.64 E-value=2.3e-08 Score=78.11 Aligned_cols=43 Identities=30% Similarity=0.388 Sum_probs=38.9
Q ss_pred hcccEEEEecCCCcEEEEc------cCCCCCC-----------chhHHHHHHHhCCCCCC
Q psy4919 35 ADGFLFVVACDTGRVVVTG------LGLPCSD-----------SVDIEKVREQLSTQEPQ 77 (96)
Q Consensus 35 ldGFl~Vvs~~~G~IlyvS------Lg~~q~d-----------p~D~~e~~eqL~~~~~~ 77 (96)
.|||++||++.+|+|+||| |||+|.| |+|+++++++|.+..+.
T Consensus 2 ~dgF~~vv~~~~G~i~yvS~~~~~~LGy~~~el~G~s~~d~ihp~D~~~f~~~L~~gl~~ 61 (339)
T 3rty_A 2 EDSFCCVISMHDGIVLYTTPSITDVLGYPRDMWLGRSFIDFVHLKDRATFASQITTGIPI 61 (339)
T ss_dssp CSCEEEEEETTTCBEEEECTTHHHHHCCCTTSSTTSBGGGGBCHHHHHHHHHHHHTTSCC
T ss_pred CcEEEEEEECCCcEEEEEChHHHHHcCCCHHHHCCCcHHHhcCHHHHHHHHHHHhcCCCC
Confidence 4999999996699999999 9999999 99999999999876543
No 7
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=98.49 E-value=5e-08 Score=63.61 Aligned_cols=44 Identities=20% Similarity=0.259 Sum_probs=34.1
Q ss_pred HHHHHhhcccEEEEecCCCcEEEEc------cCCCCCC-----------chhHHHHHHHhCC
Q psy4919 29 HLILEAADGFLFVVACDTGRVVVTG------LGLPCSD-----------SVDIEKVREQLST 73 (96)
Q Consensus 29 ~l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d-----------p~D~~e~~eqL~~ 73 (96)
+.+|+++++|++|++. +|+|+||| |||++.+ |+|++.+++++..
T Consensus 2 ~~lle~~~d~i~v~d~-~G~i~yvn~~~~~~lGy~~~el~G~~~~~~ihp~D~~~~~~~~~~ 62 (111)
T 2vlg_A 2 EFPLQTKTDIHAVLAS-NGRIIYISANSKLHLGYLQGEMIGSFLKTFLHEEDQFLVESYFYN 62 (111)
T ss_dssp -------CCEEEEECT-TSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHHC
T ss_pred cchhhcCCCEEEEEcC-CCeEEEEChHHHHHhCCCHHHHcCCcHHHeECHhHHHHHHHHHhc
Confidence 5789999999999997 99999999 9999987 9999999998854
No 8
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=97.41 E-value=5.4e-05 Score=46.39 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=34.5
Q ss_pred HHHHHHHHhhcccEEEEecCCCcEEEEc------cCCCCCC-----------chhHHHHHHHh
Q psy4919 26 ELKHLILEAADGFLFVVACDTGRVVVTG------LGLPCSD-----------SVDIEKVREQL 71 (96)
Q Consensus 26 el~~l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d-----------p~D~~e~~eqL 71 (96)
||..+++++..-|+++++. +|+|+|++ +||.+.+ |+|.+.+++.+
T Consensus 2 ~~~~ll~e~~~d~i~~~d~-~g~i~~~n~~~~~~~G~~~~el~g~~~~~~i~p~d~~~~~~~~ 63 (121)
T 3f1p_B 2 EFKGLNVCQPTRFISRHNI-EGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSF 63 (121)
T ss_dssp ------CCCCCEEEEEECT-TSBEEEECTTHHHHHSCCGGGTTTSBGGGGBCTTTHHHHHHHH
T ss_pred CcccceecCCCceEEEECC-CceEEEECcchhhhhCCChHHHcCCCHHHeECHHHHHHHHHHH
Confidence 4667888888999999998 99999999 9999887 89988877654
No 9
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=95.94 E-value=0.0041 Score=37.37 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=27.8
Q ss_pred ccEEEEecCCCcEEEEc------cCCCCCC-----------chhHHHHHHHh
Q psy4919 37 GFLFVVACDTGRVVVTG------LGLPCSD-----------SVDIEKVREQL 71 (96)
Q Consensus 37 GFl~Vvs~~~G~IlyvS------Lg~~q~d-----------p~D~~e~~eqL 71 (96)
-|+++++. +|+|+|++ +||++.+ |+|++.+++.+
T Consensus 10 ~~i~~~d~-~g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~~p~d~~~~~~~~ 60 (117)
T 3f1p_A 10 TFLSEHSM-DMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSH 60 (117)
T ss_dssp EEEEEECT-TCBEEEECTHHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHH
T ss_pred cEEEEECC-CceEEEECcChhhhhCCCHHHHcCCchhheECHHHHHHHHHHH
Confidence 46777787 99999999 8998876 89988877654
No 10
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=95.09 E-value=0.034 Score=33.16 Aligned_cols=37 Identities=19% Similarity=0.299 Sum_probs=28.4
Q ss_pred hhcccEEEEecCCCcEEEEc------cCCCCCC-----------chhHHHHHHHh
Q psy4919 34 AADGFLFVVACDTGRVVVTG------LGLPCSD-----------SVDIEKVREQL 71 (96)
Q Consensus 34 AldGFl~Vvs~~~G~IlyvS------Lg~~q~d-----------p~D~~e~~eqL 71 (96)
...-+++++.. +|+|+|++ +||++.+ |+|.+.+.+.+
T Consensus 11 ~~~~~i~~~d~-~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~p~d~~~~~~~~ 64 (121)
T 2kdk_A 11 KPTEFITRFAV-NGKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNLTDKH 64 (121)
T ss_dssp CSSEEEEEECT-TSBEEEECTHHHHHTCCCTTTSBTSBTTTTBCSSSHHHHHHHH
T ss_pred CCccEEEEECC-CeeEEEEChhHHHHHCCCHHHHcCCcHHHeeCHHHHHHHHHHH
Confidence 34557778887 99999999 9999877 77877665543
No 11
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=94.92 E-value=0.018 Score=33.62 Aligned_cols=46 Identities=9% Similarity=0.127 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhcccEEEEecCCCcEEEEc------cCCCCCC-------------chhHHHHHHHh
Q psy4919 25 QELKHLILEAADGFLFVVACDTGRVVVTG------LGLPCSD-------------SVDIEKVREQL 71 (96)
Q Consensus 25 ~el~~l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d-------------p~D~~e~~eqL 71 (96)
++.-..+++++.+.++++.. +|.++|++ +||.+.+ |+|++.+.+.+
T Consensus 3 ~~~~~~l~~~~~~~i~~~d~-~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~i~p~d~~~~~~~~ 67 (118)
T 3icy_A 3 AEELQALVDNIPAAIYHLDV-SGQATIRFRPPAFLKTLVSEHAGTTRLNTLSMIHHDDRHMLSNAY 67 (118)
T ss_dssp HHHHHHHHTTCCCCCEEECT-TSCEEECCCCCGGGGGGEEEETTEEEEGGGGGBCGGGHHHHHHHH
T ss_pred HHHHHHHHhcCCceEEEEEc-CCCceEEechhHhhcCCCHHHccCChhHHHHHcCHHHHHHHHHHH
Confidence 44445667777777888887 99999999 8876544 88988776654
No 12
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=94.40 E-value=0.083 Score=30.24 Aligned_cols=32 Identities=25% Similarity=0.200 Sum_probs=26.1
Q ss_pred HHHHHHhhcccEEEEecCCCcEEEEc------cCCCCCC
Q psy4919 28 KHLILEAADGFLFVVACDTGRVVVTG------LGLPCSD 60 (96)
Q Consensus 28 ~~l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d 60 (96)
-..+++++...++++.. +|+|+|++ +|+...+
T Consensus 5 ~~~~~~~~~~~i~~~d~-~g~i~~~N~~~~~~~g~~~~~ 42 (114)
T 3luq_A 5 LRLFTEHAPAALAMFDR-EMRYLAVSRRWREDYGLGDGD 42 (114)
T ss_dssp HHHHHHTCSSEEEEEET-TCBEEEECHHHHHHTTCCSSC
T ss_pred HHHHHhcCCceEEEEcC-CcEEEEECHHHHHHHCCCHHH
Confidence 34567777777888887 99999999 8988877
No 13
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=92.38 E-value=0.26 Score=28.44 Aligned_cols=42 Identities=19% Similarity=0.140 Sum_probs=27.1
Q ss_pred HHHHHhhcccEEEEecCCCcEEEEc------cCCCCCC-------------chhHHHHHHHh
Q psy4919 29 HLILEAADGFLFVVACDTGRVVVTG------LGLPCSD-------------SVDIEKVREQL 71 (96)
Q Consensus 29 ~l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d-------------p~D~~e~~eqL 71 (96)
..+++++..-++++.. +|.++|++ +||.+.+ |+|.+.+.+.+
T Consensus 10 ~~~~~~~~~~i~~~d~-~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 70 (125)
T 3nja_A 10 HTAESDAGIGSWVLHM-ESGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRREL 70 (125)
T ss_dssp -------CCEEEEEET-TTTEEEECHHHHHHHTCCTTTCCCBHHHHHHHBCTTTHHHHHHHH
T ss_pred HHHHHhCCeeEEEEEc-CCCcEEECHHHHHHhCCCcccccccHHHHHhhcChhHHHHHHHHH
Confidence 3456666666788887 99999999 8998776 67776665543
No 14
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=91.99 E-value=0.24 Score=30.96 Aligned_cols=43 Identities=16% Similarity=0.110 Sum_probs=33.8
Q ss_pred HHHHHHhhcccEEEEecCCCcEEEEc------cCCCCCC-------------chhHHHHHHHh
Q psy4919 28 KHLILEAADGFLFVVACDTGRVVVTG------LGLPCSD-------------SVDIEKVREQL 71 (96)
Q Consensus 28 ~~l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d-------------p~D~~e~~eqL 71 (96)
-.+++++....++.... .|.++|+| +||.+.+ |+|++.+...+
T Consensus 11 l~~~~~~~~~g~w~~d~-~~~~~~~s~~~~~~~G~~~~~~~~~~~~~~~~ihpdD~~~~~~~~ 72 (142)
T 3mr0_A 11 FQLAVSGASAGLWDWNP-KTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAAL 72 (142)
T ss_dssp HHHHHHHTTCEEEEECT-TTCCEEECHHHHHHTTCCGGGSCSEEC---CCBCTTTHHHHHHHH
T ss_pred HHHHHHhCCcEEEEEEc-CCCeEEECHHHHHHhCCCccccCCCHHHHHhhcCHHHHHHHHHHH
Confidence 45677888777888887 88899999 8987643 99988877655
No 15
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=91.56 E-value=0.1 Score=40.41 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=28.5
Q ss_pred cccEEEEecCCCcEEEEc------cCCCCCC-----------chhHHHHHHH
Q psy4919 36 DGFLFVVACDTGRVVVTG------LGLPCSD-----------SVDIEKVREQ 70 (96)
Q Consensus 36 dGFl~Vvs~~~G~IlyvS------Lg~~q~d-----------p~D~~e~~eq 70 (96)
.=|++..+. +|.++||+ |||.+.| |+|++.+++.
T Consensus 154 ~~fi~r~~~-dG~~~yvn~~~~~lLGY~peELiG~s~~~~vHPdD~~~~~~~ 204 (339)
T 3rty_A 154 PKFAIRHTA-TGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKET 204 (339)
T ss_dssp CEEEEEEET-TCBEEEECTTHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHH
T ss_pred ceEEEEECC-CCeEEEcChhhhcccCCCHHHHcCCcHHHEECHHHHHHHHHH
Confidence 347777887 99999999 9999887 9999887754
No 16
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=91.29 E-value=0.13 Score=29.28 Aligned_cols=44 Identities=18% Similarity=0.299 Sum_probs=31.9
Q ss_pred HHHHHHHhhcccEEEEecCC-CcEEEEc------cCCCCCC-------------chhHHHHHHHh
Q psy4919 27 LKHLILEAADGFLFVVACDT-GRVVVTG------LGLPCSD-------------SVDIEKVREQL 71 (96)
Q Consensus 27 l~~l~LeAldGFl~Vvs~~~-G~IlyvS------Lg~~q~d-------------p~D~~e~~eqL 71 (96)
.-..+++++...++++.. + |+|+|++ +|+.+.+ |+|...+.+.+
T Consensus 12 ~~~~~~~~~~~~i~~~d~-~~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (125)
T 3eeh_A 12 RVRELTEATNDILWEFTA-DLSEVLVINSAYEDIWGRSVAKLRENPHDFLNGIHPEDRELMKDTM 75 (125)
T ss_dssp HHHHHHSCCCCEEEEEET-TSSCEEEECTHHHHHHSSCHHHHHHCGGGGGGGBCHHHHHHHHHHH
T ss_pred HHHHHHhcCCceEEEEEc-CCCcEEEecHHHHHHHCCCHHHHccCcHHHHHhcCHHHHHHHHHHH
Confidence 345567777777888888 6 9999999 7876544 67766665554
No 17
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=90.71 E-value=0.19 Score=29.09 Aligned_cols=32 Identities=9% Similarity=0.092 Sum_probs=23.9
Q ss_pred HHHHHHhhcccEEEEecCCCcEEEEc------cCCCCCC
Q psy4919 28 KHLILEAADGFLFVVACDTGRVVVTG------LGLPCSD 60 (96)
Q Consensus 28 ~~l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d 60 (96)
.+.+++++.--++++.. +|+|+|++ +||++.+
T Consensus 15 ~~~~~~~~~~~i~~~d~-~g~i~~~N~~~~~l~G~~~~e 52 (118)
T 3olo_A 15 AHYLINNAVEASFCLGD-NWQFLYVNDATCRMTEYSREQ 52 (118)
T ss_dssp HHHHHHHCSSEEEEECT-TSBEEEECHHHHHHHCCCHHH
T ss_pred HHHHHhcCCceEEEECC-CCcEEEEHHHHHHHHCCCHHH
Confidence 44566666555677786 99999999 8887655
No 18
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=90.67 E-value=0.12 Score=39.73 Aligned_cols=35 Identities=14% Similarity=-0.100 Sum_probs=29.4
Q ss_pred cccEEEEecCCCcEEEEc------cCCCCCC-----------chhHHHHHHHh
Q psy4919 36 DGFLFVVACDTGRVVVTG------LGLPCSD-----------SVDIEKVREQL 71 (96)
Q Consensus 36 dGFl~Vvs~~~G~IlyvS------Lg~~q~d-----------p~D~~e~~eqL 71 (96)
.=|+...+. +|+++||+ |||.+.| |+|++.+++.+
T Consensus 176 ~~Fitrh~~-dG~~~yvd~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~ 227 (320)
T 4dj2_A 176 RIFTTRHTP-SCLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIH 227 (320)
T ss_dssp CEEEEEECT-TCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHH
T ss_pred ceEEEEecC-CceEEEcCcceeccCCcChHHHcCCcHHHhCCHHHHHHHHHHH
Confidence 347777787 99999999 9999988 99999888653
No 19
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=90.40 E-value=0.12 Score=39.98 Aligned_cols=35 Identities=20% Similarity=0.182 Sum_probs=28.7
Q ss_pred cccEEEEecCCCcEEEEc------cCCCCCC-----------chhHHHHHHHh
Q psy4919 36 DGFLFVVACDTGRVVVTG------LGLPCSD-----------SVDIEKVREQL 71 (96)
Q Consensus 36 dGFl~Vvs~~~G~IlyvS------Lg~~q~d-----------p~D~~e~~eqL 71 (96)
.-|+...+. +|+++||+ |||.+.| |+|.+.+++.+
T Consensus 278 ~~fi~~~~~-dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~ 329 (387)
T 4f3l_B 278 MEYVSRHAI-DGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECH 329 (387)
T ss_dssp CEEEEEECT-TSBEEEECTHHHHHHCCCHHHHTTSBGGGTBCHHHHHHHHHHH
T ss_pred ceEEEEECC-CCEEEEECCCcccccCCCHHHHcCCcHHHeeCHHHHHHHHHHH
Confidence 346777776 99999999 9999877 99999887654
No 20
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=90.39 E-value=0.12 Score=30.20 Aligned_cols=29 Identities=21% Similarity=0.556 Sum_probs=23.3
Q ss_pred HHHhhcccEEEEecCCCcEEEEc------cCCCCCC
Q psy4919 31 ILEAADGFLFVVACDTGRVVVTG------LGLPCSD 60 (96)
Q Consensus 31 ~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d 60 (96)
+++++...++++.. +|+|+|++ +|+.+.+
T Consensus 4 l~~~~~~~i~~~d~-~g~i~~~N~~~~~~~g~~~~~ 38 (126)
T 3mjq_A 4 FLETIEDMILIINR-EGRLLYANTAVPKKLGYTHEE 38 (126)
T ss_dssp TGGGCSSEEEEEET-TSBEEEECTHHHHHHSCCHHH
T ss_pred HHhhCCceEEEEeC-CCcEEEEcHHHHHHHCCCHHH
Confidence 45666677788887 99999999 8888765
No 21
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=90.31 E-value=0.36 Score=28.68 Aligned_cols=30 Identities=20% Similarity=0.362 Sum_probs=22.2
Q ss_pred HHHHhhcccEEEEecCCCcEEEEc------cCCCCCC
Q psy4919 30 LILEAADGFLFVVACDTGRVVVTG------LGLPCSD 60 (96)
Q Consensus 30 l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d 60 (96)
.+++++.--++++.. +|+|+|+. +||++.+
T Consensus 21 ~l~e~~~~~i~~~d~-~g~i~~~N~a~~~~~G~~~~e 56 (126)
T 3bwl_A 21 ALFENSPDMIDVLDA-DGTICEVNQRFCAELGYDESE 56 (126)
T ss_dssp HHHHHCSSEEEEECT-TCBEEEECHHHHHHHTCCGGG
T ss_pred HHHhhCCcEEEEEcC-CCCEEEEcHHHHHHhCCCHHH
Confidence 455555555677776 99999999 8887755
No 22
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=90.19 E-value=0.45 Score=28.50 Aligned_cols=30 Identities=10% Similarity=0.124 Sum_probs=22.2
Q ss_pred HHHHhhcccEEEEecCCCcEEEEc------cCCCCCC
Q psy4919 30 LILEAADGFLFVVACDTGRVVVTG------LGLPCSD 60 (96)
Q Consensus 30 l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d 60 (96)
.+++++.--++++.. +|+|+|+. +||++.+
T Consensus 9 ~~~~~~~~~i~~~d~-~g~i~~~N~a~~~~~G~~~~e 44 (120)
T 2gj3_A 9 QTVEHAPIAISITDL-KANILYANRAFRTITGYGSEE 44 (120)
T ss_dssp HHHHHCSSEEEEECT-TCBEEEECHHHHHHHCCCTTG
T ss_pred HHHHhCCCeEEEECC-CCCEEeehHHHHHHHCcCHHH
Confidence 345555445566776 99999999 8998877
No 23
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=90.04 E-value=0.32 Score=28.80 Aligned_cols=33 Identities=24% Similarity=0.198 Sum_probs=25.4
Q ss_pred EEEEecCCCcEEEEc------cCCCCCC------------chhHHHHHHHh
Q psy4919 39 LFVVACDTGRVVVTG------LGLPCSD------------SVDIEKVREQL 71 (96)
Q Consensus 39 l~Vvs~~~G~IlyvS------Lg~~q~d------------p~D~~e~~eqL 71 (96)
++.+...+|+++|+| +||.+.+ |+|++.+.+.+
T Consensus 6 iw~~d~~~~~~~~~n~~~~~l~G~~~~e~~~~~~~~~~ihpdd~~~~~~~~ 56 (115)
T 3h9w_A 6 PWKINWQTMAFEYIGPQIEALLGWPQGSWKSVEDWATRMHPEDQEWVVNFC 56 (115)
T ss_dssp EEEEETTTTEEEEECTHHHHHHCSCGGGCCBHHHHHHSBCHHHHHHHHHHH
T ss_pred EEEEEcCCCcEEEEChhHHHHhCCChHHccCHHHHHHhcCHHHHHHHHHHH
Confidence 455664599999999 9998866 88888776654
No 24
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=89.97 E-value=0.13 Score=39.28 Aligned_cols=33 Identities=15% Similarity=-0.009 Sum_probs=28.1
Q ss_pred cEEEEecCCCcEEEEc------cCCCCCC-----------chhHHHHHHHh
Q psy4919 38 FLFVVACDTGRVVVTG------LGLPCSD-----------SVDIEKVREQL 71 (96)
Q Consensus 38 Fl~Vvs~~~G~IlyvS------Lg~~q~d-----------p~D~~e~~eqL 71 (96)
|+...+. +|+++||+ |||.+.| |+|++.+++.+
T Consensus 167 Fitrh~~-dG~~~yvd~~~~~lLGY~peELig~s~~~~iHpdD~~~~~~~~ 216 (309)
T 3gdi_A 167 FTTTHTP-NCLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIH 216 (309)
T ss_dssp EEEEECT-TCBEEEECTTHHHHHSCCHHHHTTSBHHHHBCTTSHHHHHHHH
T ss_pred EEEEecC-CCeEEEECcccccccCcCHHHHcCCCHHHhCCHHHHHHHHHHH
Confidence 7777777 99999999 9999988 99998876643
No 25
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=89.76 E-value=0.14 Score=38.87 Aligned_cols=35 Identities=11% Similarity=0.096 Sum_probs=28.0
Q ss_pred cccEEEEecCCCcEEEEc------cCCCCCC-----------chhHHHHHHHh
Q psy4919 36 DGFLFVVACDTGRVVVTG------LGLPCSD-----------SVDIEKVREQL 71 (96)
Q Consensus 36 dGFl~Vvs~~~G~IlyvS------Lg~~q~d-----------p~D~~e~~eqL 71 (96)
.-|+...+. +|.++||+ |||.+.| |+|.+.+.+.+
T Consensus 251 ~~f~~~~~~-dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~ 302 (361)
T 4f3l_A 251 EEFTSRHSL-EWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCH 302 (361)
T ss_dssp CEEEEEECT-TSBEEEECTTSHHHHCCCHHHHTTSBGGGGBCHHHHHHHHHHH
T ss_pred ceeEEEEcC-CceEEEECChhhhhhCcCHHHHcCCCHHHeECHHHHHHHHHHH
Confidence 456666776 99999999 9999877 99998776543
No 26
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=88.94 E-value=0.3 Score=29.64 Aligned_cols=32 Identities=22% Similarity=0.500 Sum_probs=21.6
Q ss_pred HHHHHHHhhcccEEEEecCCCcEEEEc------cCCCCCC
Q psy4919 27 LKHLILEAADGFLFVVACDTGRVVVTG------LGLPCSD 60 (96)
Q Consensus 27 l~~l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d 60 (96)
+..++-.+.|| ++++.. +|+|+|+. +||+..+
T Consensus 13 ~~~l~e~~~d~-i~~~d~-~g~i~~vN~a~~~l~Gy~~~e 50 (117)
T 2r78_A 13 YRALFEHAIDG-IFIMDA-EGHYLDVNPAICSAIGYTRDE 50 (117)
T ss_dssp HHHHHHHCSSE-EEEECT-TSBEEEECHHHHHHHCCCHHH
T ss_pred HHHHHhcCCce-EEEECC-CCCEEEecHHHHHHHCcCHHH
Confidence 34444444455 566776 99999999 7887655
No 27
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=88.40 E-value=0.37 Score=37.72 Aligned_cols=40 Identities=23% Similarity=0.403 Sum_probs=32.4
Q ss_pred cccEEEEecCCCcEEEEc------cCCCCCC-----------chhHHHHHHHhCCCC
Q psy4919 36 DGFLFVVACDTGRVVVTG------LGLPCSD-----------SVDIEKVREQLSTQE 75 (96)
Q Consensus 36 dGFl~Vvs~~~G~IlyvS------Lg~~q~d-----------p~D~~e~~eqL~~~~ 75 (96)
=|||+|+..++++|+++| ||+.+.+ |.+.+.+++.|....
T Consensus 42 ~G~Ll~~~~~~~~i~~~S~N~~~~lg~~~~~llG~~l~~ll~~~~~~~l~~~l~~~~ 98 (337)
T 2ool_A 42 HGYLFVVSETDLRIASVSANVEDLLRQPPASLLNVPIAHYLTAASAARLTHALHGGD 98 (337)
T ss_dssp TSEEEEECTTTCBEEEEETTHHHHHSSCGGGGTTCBGGGGBCHHHHHHHHHHHCC--
T ss_pred CEEEEEEECCCCEEEEEehhHHHHHCcCHHHHcCCCHHHHcCHHHHHHHHHHHhcCC
Confidence 399999997679999999 8888866 788889999886543
No 28
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=88.23 E-value=0.14 Score=39.27 Aligned_cols=33 Identities=15% Similarity=-0.043 Sum_probs=28.0
Q ss_pred ccEEEEecCCCcEEEEc------cCCCCCC-----------chhHHHHHHH
Q psy4919 37 GFLFVVACDTGRVVVTG------LGLPCSD-----------SVDIEKVREQ 70 (96)
Q Consensus 37 GFl~Vvs~~~G~IlyvS------Lg~~q~d-----------p~D~~e~~eq 70 (96)
=|+...+. +|+++||+ |||.+.| |+|++.+++.
T Consensus 175 ~Fitrh~~-dG~~~yvs~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~ 224 (317)
T 4dj3_A 175 IFTTTHTP-GCVFLEVDERAVPLLGYLPQDLIGTSILTYLHPEDRPLMVAI 224 (317)
T ss_dssp EEEEEECT-TSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCTTTTTHHHHH
T ss_pred ceEEEecC-CCeEEEEChHHhhhcCcChHHHcCCCHHHeECHHHHHHHHHH
Confidence 47777777 99999999 9999888 9998888754
No 29
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=87.08 E-value=0.59 Score=26.13 Aligned_cols=35 Identities=9% Similarity=0.062 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhcccEEEEecCCCcEEEEc------cCCCCCC
Q psy4919 25 QELKHLILEAADGFLFVVACDTGRVVVTG------LGLPCSD 60 (96)
Q Consensus 25 ~el~~l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d 60 (96)
.+.-..+++++...++++.. +|+|+|++ +|+...+
T Consensus 6 ~~~~~~~~~~~~~~i~~~d~-~~~i~~~N~~~~~~~g~~~~~ 46 (124)
T 3lyx_A 6 LKQRAKAFDYVFDAIVVTDL-QGFIIDWNKGSETLYGYSKEQ 46 (124)
T ss_dssp HHHHHHGGGTCSSEEEEEET-TCBEEEECHHHHHHHCCCHHH
T ss_pred HHHHHHHHhhcCceEEEECC-CCcEeehhhHHHHHhCCCHHH
Confidence 34445667777788888987 99999999 7776543
No 30
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=86.10 E-value=0.61 Score=28.30 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=22.0
Q ss_pred HHHHhhcccEEEEecCCCcEEEEc------cCCCCCC
Q psy4919 30 LILEAADGFLFVVACDTGRVVVTG------LGLPCSD 60 (96)
Q Consensus 30 l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d 60 (96)
.+++++.--++++.. +|.|+|+. +||+..+
T Consensus 20 ~l~~~~~d~i~~~d~-~g~i~~~N~a~~~l~Gy~~~e 55 (130)
T 1d06_A 20 SILDTVPDATVVSAT-DGTIVSFNAAAVRQFGYAEEE 55 (130)
T ss_dssp HHHTTCSSEEEEEET-TSBEEEECHHHHHHHCCCHHH
T ss_pred HHHhhCcCeEEEECC-CCeEEEEcHHHHHHHCCCHHH
Confidence 355555455667776 99999999 8888765
No 31
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=84.07 E-value=0.82 Score=28.91 Aligned_cols=31 Identities=16% Similarity=0.226 Sum_probs=21.8
Q ss_pred HHHHHhhcccEEEEecCC---CcEEEEc------cCCCCCC
Q psy4919 29 HLILEAADGFLFVVACDT---GRVVVTG------LGLPCSD 60 (96)
Q Consensus 29 ~l~LeAldGFl~Vvs~~~---G~IlyvS------Lg~~q~d 60 (96)
..+++++.--++++.. + |+|+|++ +||+..+
T Consensus 10 ~~~~~~~~~~i~~~d~-~~~~g~i~~~N~a~~~~~G~~~~e 49 (176)
T 4hia_A 10 RAVFDRSGVALTLVDM-SLPEQPVVLANPPFLRMTGYTEGQ 49 (176)
T ss_dssp HHHHHHCSSCCEEEET-TSTTCCEEEECHHHHHHHTCCHHH
T ss_pred HHHHhcCCCcEEEEec-CCCCCcEEEECHHHHHHHCcCHHH
Confidence 3456666555666776 6 9999999 7876644
No 32
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=81.65 E-value=0.35 Score=28.28 Aligned_cols=35 Identities=9% Similarity=0.150 Sum_probs=22.1
Q ss_pred HHHHHHHHHhhcccEEEEecCCCcEEEEc------cCCCCCC
Q psy4919 25 QELKHLILEAADGFLFVVACDTGRVVVTG------LGLPCSD 60 (96)
Q Consensus 25 ~el~~l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d 60 (96)
++.-..+++++.-.++++.. +|+|+|+. +||...+
T Consensus 18 ~~~~~~i~~~~~~~i~~~d~-~g~i~~~N~~~~~~~g~~~~~ 58 (125)
T 3fc7_A 18 RKKFESLVSDSPDGIVHLTT-NGTILSVNPSMAGRLGADPDT 58 (125)
T ss_dssp --------CCSCCEEEEEET-TSBEEEECHHHHHHHTSCHHH
T ss_pred HHHHHHHHhcCCCeEEEEcC-CCeEEEECHHHHHHhCCCHHH
Confidence 33445667777777888887 99999999 7876654
No 33
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=81.64 E-value=1.6 Score=25.35 Aligned_cols=33 Identities=9% Similarity=0.024 Sum_probs=26.2
Q ss_pred HHHHHHHhhcccEEEEecCCCcEEEEc------cCCCCCC
Q psy4919 27 LKHLILEAADGFLFVVACDTGRVVVTG------LGLPCSD 60 (96)
Q Consensus 27 l~~l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d 60 (96)
+...+++++.--++++.. +|+|+|+. +|+...+
T Consensus 8 l~~~il~~~~~~i~~~D~-~g~I~~~N~aa~~l~g~~~~~ 46 (115)
T 3b33_A 8 LPSAILNNMVTATLILDD-GLAIRYANPAAELLFSQSAKR 46 (115)
T ss_dssp HHHHHHHHCSSEEEEECT-TCBEEEECHHHHHHTTSCHHH
T ss_pred cHHHHHhhcCceEEEECC-CCcEEEECHHHHHHhCCCHHH
Confidence 455678888777788887 99999998 8887654
No 34
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=81.61 E-value=1.4 Score=25.96 Aligned_cols=21 Identities=29% Similarity=0.605 Sum_probs=17.6
Q ss_pred EEEEecCC-CcEEEEc------cCCCCCC
Q psy4919 39 LFVVACDT-GRVVVTG------LGLPCSD 60 (96)
Q Consensus 39 l~Vvs~~~-G~IlyvS------Lg~~q~d 60 (96)
++++.. + |+|+|+. |||++.+
T Consensus 11 i~~~d~-~~g~I~~~N~aa~~l~G~~~~e 38 (114)
T 1ll8_A 11 IFTVDA-KTTEILVANDKACGLLGYSSQD 38 (114)
T ss_dssp EEEEET-TTCBEEEECTTHHHHHTCCTTT
T ss_pred EEEEEC-CCCeEEEehHHHHHHhCCCHHH
Confidence 456776 6 9999998 9999888
No 35
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=80.85 E-value=2.5 Score=23.50 Aligned_cols=30 Identities=13% Similarity=0.113 Sum_probs=23.2
Q ss_pred HHHHHhhcccEEEEe---cCCCcEEEEc------cCCCCC
Q psy4919 29 HLILEAADGFLFVVA---CDTGRVVVTG------LGLPCS 59 (96)
Q Consensus 29 ~l~LeAldGFl~Vvs---~~~G~IlyvS------Lg~~q~ 59 (96)
..+++++...++++. . +|.|+|++ +|+...
T Consensus 9 ~~~~~~~~~~i~~~d~~d~-~~~i~~~N~~~~~~~g~~~~ 47 (130)
T 2z6d_A 9 KTALSTLQQTFVVSDATQP-HCPIVYASSGFFTMTGYSSK 47 (130)
T ss_dssp HHHHHHTTCEEEEEETTST-TCCEEEECHHHHHHHCCCHH
T ss_pred HHHHHhcccceeeeeccCC-CCcEEEecHHHHHHhCcCHH
Confidence 456777777788888 6 99999999 776543
No 36
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=77.98 E-value=4.4 Score=24.84 Aligned_cols=40 Identities=18% Similarity=0.132 Sum_probs=28.9
Q ss_pred CCCCCCCChHHHHHHHHHhhcccEEEEe-cCCCcEEEEc------cCCC
Q psy4919 16 TYKPSFLTDQELKHLILEAADGFLFVVA-CDTGRVVVTG------LGLP 57 (96)
Q Consensus 16 ~~kPsfls~~el~~l~LeAldGFl~Vvs-~~~G~IlyvS------Lg~~ 57 (96)
+|.-. +...+.-..+++++.-.++++. . +|+|+|++ +|+.
T Consensus 8 ~~~~~-~~~~~~~~~~~~~~~~~i~~~d~~-~~~i~~~N~~~~~~~g~~ 54 (158)
T 3k3c_A 8 DWDKT-VGAAEDVRRIFEHIPAILVGLEGP-DHRFVAVNAAYRGFSPLL 54 (158)
T ss_dssp CHHHH-TCCHHHHHHHHHHCSSEEEEEETT-TTEEEEECHHHHHHCTTC
T ss_pred chHHH-HHHHHHHHHHHhcCCceEEEEECC-CcEeHHHHHHHHHHcCCc
Confidence 34433 5555655667777766677787 7 99999999 8988
No 37
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=77.53 E-value=0.91 Score=25.58 Aligned_cols=29 Identities=3% Similarity=0.048 Sum_probs=18.5
Q ss_pred HHhhcccEEEEecC--CCcEEEEc------cCCCCCC
Q psy4919 32 LEAADGFLFVVACD--TGRVVVTG------LGLPCSD 60 (96)
Q Consensus 32 LeAldGFl~Vvs~~--~G~IlyvS------Lg~~q~d 60 (96)
++++.--++++..+ +|+|+|++ +||...+
T Consensus 3 l~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~~ 39 (115)
T 4eet_B 3 PEFIEKNFVITDPRLPDNPIIFASDGFLELTEYSREE 39 (115)
T ss_dssp --CCCCSEEEECTTSTTCCEEEECHHHHHHHCCCHHH
T ss_pred cccCCCcEEEEcCCCCCCcEEEEcHHHHHHHCcCHHH
Confidence 44554455666643 79999999 7776544
No 38
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=77.01 E-value=1 Score=26.66 Aligned_cols=30 Identities=13% Similarity=0.076 Sum_probs=21.4
Q ss_pred HHHHHHhhcccEEEEecCCCcEEEEc------cCCCCCC
Q psy4919 28 KHLILEAADGFLFVVACDTGRVVVTG------LGLPCSD 60 (96)
Q Consensus 28 ~~l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d 60 (96)
..++-.+-+|++ +.. +|+|+|++ +||.+.+
T Consensus 6 ~~~~~~~~~~i~--~~~-~g~i~~~N~a~~~l~G~~~~e 41 (120)
T 3mqq_A 6 KTAFHLAPIGLV--LSR-DRVIEDCNDELAAIFRCARAD 41 (120)
T ss_dssp HHHHHHCSSEEE--EEE-TTEEEEECHHHHHHTTSCHHH
T ss_pred HHHHhcCCceEE--Eec-CCEEHHHHHHHHHHhCcCHHH
Confidence 344445557773 465 99999999 8988765
No 39
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=76.57 E-value=2.5 Score=28.94 Aligned_cols=32 Identities=13% Similarity=0.064 Sum_probs=22.5
Q ss_pred HHHHHhhcccEEEEecC--CCcEEEEc------cCCCCCC
Q psy4919 29 HLILEAADGFLFVVACD--TGRVVVTG------LGLPCSD 60 (96)
Q Consensus 29 ~l~LeAldGFl~Vvs~~--~G~IlyvS------Lg~~q~d 60 (96)
..+++++.--++++... +|+|+|++ +||++.+
T Consensus 66 ~~i~~~~~~~i~~~d~~~~~g~i~~~N~a~~~l~G~~~~e 105 (258)
T 3p7n_A 66 LDLIEASPIASVVSDPRLADNPLIAINQAFTDLTGYSEEE 105 (258)
T ss_dssp HHHHHTCSSEEEEECTTSTTCCEEEECHHHHHHHCCCGGG
T ss_pred HHHHhcCCccEEEEcCCCCCCcEEEEhHHHHHHcCCCHHH
Confidence 44566665556666642 77899999 8888766
No 40
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=76.46 E-value=1.8 Score=26.48 Aligned_cols=32 Identities=13% Similarity=0.176 Sum_probs=21.2
Q ss_pred HHHHHhhcccEEEEecC--CCcEEEEc------cCCCCCC
Q psy4919 29 HLILEAADGFLFVVACD--TGRVVVTG------LGLPCSD 60 (96)
Q Consensus 29 ~l~LeAldGFl~Vvs~~--~G~IlyvS------Lg~~q~d 60 (96)
..+++++.-.++++... +|+|+|++ +||...+
T Consensus 38 ~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e 77 (166)
T 3ue6_A 38 VKALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQ 77 (166)
T ss_dssp HHHHHHTTSCEEEEETTSTTCCEEEECHHHHHHHCCCHHH
T ss_pred HHHHhcCCceEEEEEccCCCCcEEEECHHHHHHhCcCHHH
Confidence 34555555555666653 69999999 7776544
No 41
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=75.75 E-value=2 Score=25.43 Aligned_cols=21 Identities=14% Similarity=0.309 Sum_probs=16.8
Q ss_pred EEEEecCCCcEEEEc------cCCCCCC
Q psy4919 39 LFVVACDTGRVVVTG------LGLPCSD 60 (96)
Q Consensus 39 l~Vvs~~~G~IlyvS------Lg~~q~d 60 (96)
++++.. +|.|+|+. +||+..+
T Consensus 6 i~~~d~-~g~i~~~N~a~~~l~G~~~~e 32 (119)
T 2vv6_A 6 MIVIDG-HGIIQLFSTAAERLFGWSELE 32 (119)
T ss_dssp EEEEET-TSBEEEECHHHHHHHCCCHHH
T ss_pred EEEECC-CCeEEEEhHHHHHHhCCCHHH
Confidence 456666 99999999 8888765
No 42
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=75.19 E-value=3.3 Score=25.26 Aligned_cols=38 Identities=13% Similarity=0.292 Sum_probs=27.8
Q ss_pred CChHHHHHHHHHhhcccEEEEecCCC---cEEEEc------cCCCCCC
Q psy4919 22 LTDQELKHLILEAADGFLFVVACDTG---RVVVTG------LGLPCSD 60 (96)
Q Consensus 22 ls~~el~~l~LeAldGFl~Vvs~~~G---~IlyvS------Lg~~q~d 60 (96)
...+++-..+++++...++++.. +| +|+|++ +|+...+
T Consensus 21 ~~~~~~~~~i~~~~~~~i~~~d~-~~~~~~i~~~N~~~~~~~g~~~~~ 67 (162)
T 3sw1_A 21 MINAQLLQSMVDASNDGIVVAEK-EGDDTILIYVNAAFEYLTGYSRDE 67 (162)
T ss_dssp CCCHHHHHHHHHTCSSEEEEEEE-ETTEEEEEEECHHHHHHHTCCHHH
T ss_pred cchHHHHHHHHhhccCcEEEEeC-CCCccEEEEECHHHHHHHCCCHHH
Confidence 33455566677777777888887 89 999999 7765443
No 43
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=74.60 E-value=5.9 Score=26.53 Aligned_cols=31 Identities=13% Similarity=0.018 Sum_probs=24.4
Q ss_pred HHHHHhhcccEEEEecCCCcEEEEc------cCCCCCC
Q psy4919 29 HLILEAADGFLFVVACDTGRVVVTG------LGLPCSD 60 (96)
Q Consensus 29 ~l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d 60 (96)
.-++++++--++|+.. +|+|+|+. +|+...+
T Consensus 25 ~~il~~~~~gi~v~D~-~g~I~~~N~a~~~~~G~~~~e 61 (152)
T 3mxq_A 25 SELLDQLSFALCIVRN-DYVIVKVNEYFESRVIFDGET 61 (152)
T ss_dssp HHHHHHHCCEEEEEET-TSBEEEECHHHHHTSSSCHHH
T ss_pred HHHHhcCCCCEEEEcC-CCEEEEECHHHHHHHCcCHHH
Confidence 4467777767778887 99999998 7887665
No 44
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=73.99 E-value=2.8 Score=25.36 Aligned_cols=31 Identities=13% Similarity=0.035 Sum_probs=24.0
Q ss_pred HHHHHhhcccEEEEecCCCcEEEEc------cCCCCCC
Q psy4919 29 HLILEAADGFLFVVACDTGRVVVTG------LGLPCSD 60 (96)
Q Consensus 29 ~l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d 60 (96)
..+++++...++++.. +|.|+|+. +|+...+
T Consensus 43 ~~~l~~~~~~i~~~d~-~g~i~~~N~~~~~l~g~~~~~ 79 (167)
T 1v9y_A 43 FPALEQNMMGAVLINE-NDEVMFFNPAAEKLWGYKREE 79 (167)
T ss_dssp HHHHHTCSSEEEEECT-TSBEEEECHHHHHHHSCCGGG
T ss_pred HHHHHhCCCCEEEECC-CCcEEEECHHHHHHhCCCHHH
Confidence 4566777677778886 99999999 8887655
No 45
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=71.89 E-value=2.4 Score=27.23 Aligned_cols=29 Identities=14% Similarity=0.241 Sum_probs=21.6
Q ss_pred HHHhhcccEEEEecCCCcEEEEc------cCCCCCC
Q psy4919 31 ILEAADGFLFVVACDTGRVVVTG------LGLPCSD 60 (96)
Q Consensus 31 ~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d 60 (96)
+++++.--++++.. +|+|+|+. |||+..+
T Consensus 12 i~~~~~d~i~~~D~-~g~I~~~N~aa~~l~G~~~~e 46 (129)
T 3mfx_A 12 FIQHLTEAMILVNA-NGFIRSCNQRSAELLDCPQVS 46 (129)
T ss_dssp HHTTCSSEEEEEET-TSBEEEECHHHHHHTTSCHHH
T ss_pred HHhcCCceEEEECC-CCEEEeEhHHHHHHHCcCHHH
Confidence 45555444677787 99999999 8988765
No 46
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=71.59 E-value=3.5 Score=27.82 Aligned_cols=29 Identities=14% Similarity=0.437 Sum_probs=22.2
Q ss_pred HHHhhcccEEEEecCCCcEEEEc------cCCCCCC
Q psy4919 31 ILEAADGFLFVVACDTGRVVVTG------LGLPCSD 60 (96)
Q Consensus 31 ~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d 60 (96)
++++..-.++++.. +|+|+|+. +||+..+
T Consensus 116 ~~~~~~~~i~~~d~-~g~i~~~N~~~~~~~G~~~~e 150 (227)
T 3ewk_A 116 AMDANSEMILLTDR-AGRIIYANPALCRFSGMAEGE 150 (227)
T ss_dssp HHHTCCSEEEEECT-TSCEEEECHHHHHHHTCCTHH
T ss_pred HHhcCcCeEEEEcC-CCcEEEEchHHHHHhCCCHHH
Confidence 55666556677776 99999999 8887765
No 47
>3o2i_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Leptospirillum rubarum}
Probab=71.22 E-value=2.1 Score=29.53 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=18.2
Q ss_pred CCCCCCCChHHHHHHHHHhh
Q psy4919 16 TYKPSFLTDQELKHLILEAA 35 (96)
Q Consensus 16 ~~kPsfls~~el~~l~LeAl 35 (96)
-|-|-.++++||..|+|||+
T Consensus 45 L~H~~~~TE~EF~~LLLEA~ 64 (125)
T 3o2i_A 45 LLHSEYWTEDEFYNLLLEAF 64 (125)
T ss_dssp EEESSCCCHHHHHHHHHHHH
T ss_pred EeccccccHHHHHHHHHHHH
Confidence 47899999999999999986
No 48
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=68.88 E-value=2.8 Score=23.77 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=22.2
Q ss_pred HHHHHHhhcccEEEEecCCCcEEEEc------cCC
Q psy4919 28 KHLILEAADGFLFVVACDTGRVVVTG------LGL 56 (96)
Q Consensus 28 ~~l~LeAldGFl~Vvs~~~G~IlyvS------Lg~ 56 (96)
-..+++++.--++++.. +|+|+|+. +||
T Consensus 17 ~~~il~~~~~~i~~~d~-~g~i~~~N~~~~~~~g~ 50 (118)
T 2w0n_A 17 RQAMLQSIKEGVVAVDD-RGEVTLINDAAQELLNY 50 (118)
T ss_dssp HHHHHHCCCCCCEEEBT-TTBCCCBCHHHHHHHCS
T ss_pred HHHHHhhccccEEEECC-CCcEeehhHHHHHHhCC
Confidence 34567777666778887 99999999 897
No 49
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=68.40 E-value=9.4 Score=24.67 Aligned_cols=40 Identities=18% Similarity=0.132 Sum_probs=28.0
Q ss_pred CCCCCCCChHHHHHHHHHhhcccEEEEe-cCCCcEEEEc------cCCC
Q psy4919 16 TYKPSFLTDQELKHLILEAADGFLFVVA-CDTGRVVVTG------LGLP 57 (96)
Q Consensus 16 ~~kPsfls~~el~~l~LeAldGFl~Vvs-~~~G~IlyvS------Lg~~ 57 (96)
+|.-. +...+.-..+++++.-.++++. . +|+|+|+. +|+.
T Consensus 28 ~~~~~-~~~~~~l~~l~~~~~~~i~~~d~~-~g~i~~~N~a~~~l~G~~ 74 (185)
T 3kx0_X 28 DWDKT-VGAAEDVRRIFEHIPAILVGLEGP-DHRFVAVNAAYRGFSPLL 74 (185)
T ss_dssp CHHHH-TCCHHHHHHHHHHCSSEEEEEETT-TTEEEEECHHHHHHCCCC
T ss_pred Cchhh-hhhHHHHHHHHhcCCceEEEEECC-CcEEEEEcHHHHHHcCCc
Confidence 44444 4444555556677766677787 7 99999999 8988
No 50
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=67.39 E-value=4.5 Score=31.94 Aligned_cols=39 Identities=18% Similarity=0.232 Sum_probs=30.9
Q ss_pred cccEEEEecCCCcEEEEc------cCCCCCC-----------chhHHHHHHHhCCCC
Q psy4919 36 DGFLFVVACDTGRVVVTG------LGLPCSD-----------SVDIEKVREQLSTQE 75 (96)
Q Consensus 36 dGFl~Vvs~~~G~IlyvS------Lg~~q~d-----------p~D~~e~~eqL~~~~ 75 (96)
-|||+|+..++++|+++| ||..+.+ + ..+.+++.|....
T Consensus 52 hG~LL~l~~~~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~~-~~~~l~~~l~~~~ 107 (343)
T 3s7o_A 52 HGALLTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPE-QWPALQAALPPGC 107 (343)
T ss_dssp TSEEEEEETTTCBEEEEETTHHHHHSSCHHHHTTCBHHHHSTT-THHHHHHHSCTTC
T ss_pred CeEEEEEECCCCEEEEEcccHHHHhCcChHHHcCCCHHHHHhH-HHHHHHHHhcccc
Confidence 599999998799999999 8876544 5 7778888776543
No 51
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=66.25 E-value=0.96 Score=26.54 Aligned_cols=27 Identities=7% Similarity=0.095 Sum_probs=17.6
Q ss_pred hhcccEEEEecC--CCcEEEEc------cCCCCCC
Q psy4919 34 AADGFLFVVACD--TGRVVVTG------LGLPCSD 60 (96)
Q Consensus 34 AldGFl~Vvs~~--~G~IlyvS------Lg~~q~d 60 (96)
++.-.++++..+ +|+|+|++ +||...+
T Consensus 5 ~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~e 39 (128)
T 3t50_A 5 FTLMPMLITNPHLPDNPIVFANPAFLKLTGYEADE 39 (128)
T ss_dssp CCSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHH
T ss_pred cCcccEEEecCCCCCCcEEEEcHHHHHHhCcCHHH
Confidence 343445666542 78999999 7776544
No 52
>3u7d_B Protein HEG homolog 1; FERM domain, RAP1 effector, membrane protein cytoplasmic TAI protein binding; 2.49A {Homo sapiens}
Probab=64.38 E-value=1.7 Score=22.70 Aligned_cols=13 Identities=46% Similarity=1.081 Sum_probs=10.7
Q ss_pred CCCCCCCCCChHH
Q psy4919 14 DGTYKPSFLTDQE 26 (96)
Q Consensus 14 ~~~~kPsfls~~e 26 (96)
-..|.|||++++.
T Consensus 8 pgqynpsfisdds 20 (26)
T 3u7d_B 8 PGQYNPSFISDES 20 (26)
T ss_pred cCccCcccccCcc
Confidence 4789999999763
No 53
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=63.60 E-value=1.5 Score=26.53 Aligned_cols=29 Identities=10% Similarity=0.112 Sum_probs=18.4
Q ss_pred HHHhhcccEEEEecCCC---cEEEEc------cCCCCCC
Q psy4919 31 ILEAADGFLFVVACDTG---RVVVTG------LGLPCSD 60 (96)
Q Consensus 31 ~LeAldGFl~Vvs~~~G---~IlyvS------Lg~~q~d 60 (96)
+++++.-.++++.. +| +|+|++ +||+..+
T Consensus 4 ~~~~~~~~i~~~d~-~g~~~~i~~~N~a~~~~~G~~~~e 41 (132)
T 2pr5_A 4 MLDHVRVGVVITDP-ALEDNPIVYVNQGFVQMTGYETEE 41 (132)
T ss_dssp --CCCCCEEEEECT-TSTTCCEEEECHHHHHHHSCCHHH
T ss_pred HHhcCCCcEEEEeC-CCCCCcEEEECHHHHHHhCcCHHH
Confidence 34444444566665 55 999999 8887654
No 54
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=62.22 E-value=7.2 Score=20.47 Aligned_cols=21 Identities=19% Similarity=0.397 Sum_probs=16.4
Q ss_pred EEEEecCCCcEEEEc------cCCCCCC
Q psy4919 39 LFVVACDTGRVVVTG------LGLPCSD 60 (96)
Q Consensus 39 l~Vvs~~~G~IlyvS------Lg~~q~d 60 (96)
++++.. +|+|+|+. +|+...+
T Consensus 5 i~~~d~-~g~i~~~N~~~~~l~g~~~~~ 31 (96)
T 3a0s_A 5 IITLSK-DGRITEWNKKAEQLFGLKKEN 31 (96)
T ss_dssp EEEEET-TSBEEEECHHHHHHHCCCHHH
T ss_pred EEEEcC-CCCEeehhHHHHHHhCCCHHH
Confidence 567776 99999999 7876543
No 55
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=62.04 E-value=7.9 Score=25.35 Aligned_cols=32 Identities=13% Similarity=0.211 Sum_probs=22.4
Q ss_pred EEEEecCCCcEEEEccCCCCCCchhHHHHHHHh
Q psy4919 39 LFVVACDTGRVVVTGLGLPCSDSVDIEKVREQL 71 (96)
Q Consensus 39 l~Vvs~~~G~IlyvSLg~~q~dp~D~~e~~eqL 71 (96)
.|||.. +|+|.|+..|....+.-+.+++.+.|
T Consensus 122 tflID~-~G~I~~~~~~~~~~~~~~~~eil~~l 153 (157)
T 4g2e_A 122 VFVIDK-EGKVRYKWVSDDPTKEPPYDEIEKVV 153 (157)
T ss_dssp EEEECT-TSBEEEEEEESSTTCCCCHHHHHHHH
T ss_pred EEEECC-CCEEEEEEECCCCCCCCCHHHHHHHH
Confidence 488997 99999998776655544455555544
No 56
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=60.15 E-value=2.8 Score=24.01 Aligned_cols=30 Identities=7% Similarity=0.129 Sum_probs=20.0
Q ss_pred HHHhhcccEEEEecC--CCcEEEEc------cCCCCCC
Q psy4919 31 ILEAADGFLFVVACD--TGRVVVTG------LGLPCSD 60 (96)
Q Consensus 31 ~LeAldGFl~Vvs~~--~G~IlyvS------Lg~~q~d 60 (96)
+++++...++++... +|.|+|++ +|+...+
T Consensus 7 ~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~ 44 (146)
T 2v0u_A 7 TLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREE 44 (146)
T ss_dssp TGGGSSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHH
T ss_pred HHhcCCCcEEEEcCCCCCceEEEEcHHHHHHHCcCHHH
Confidence 345565666677632 79999999 7766443
No 57
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=60.02 E-value=4.1 Score=31.85 Aligned_cols=39 Identities=21% Similarity=0.294 Sum_probs=29.9
Q ss_pred cccEEEEecCCCcEEEEc------cCCCCCC-----------chhHHHHHHHhCCCC
Q psy4919 36 DGFLFVVACDTGRVVVTG------LGLPCSD-----------SVDIEKVREQLSTQE 75 (96)
Q Consensus 36 dGFl~Vvs~~~G~IlyvS------Lg~~q~d-----------p~D~~e~~eqL~~~~ 75 (96)
-|||+|+. ++++|+++| ||....+ +.....+++.|....
T Consensus 29 hG~Ll~~~-~~~~I~~~S~N~~~~lg~~~~~~lG~~l~~ll~~~~~~~l~~~l~~~~ 84 (327)
T 4e04_A 29 HGLLLALA-ADMTIVAGSDNLPELTGLAIGALIGRSAADVFDSETHNRLTIALAEPG 84 (327)
T ss_dssp TSEEEEEC-TTCBEEEEETTHHHHHSCCHHHHTTCBHHHHBCHHHHHHHHHHHHSCS
T ss_pred CeEEEEEc-CCCeEEEEcccHHHHhCCChHhhcCCCHHHHcCHHHHHHHHHHhhccc
Confidence 59999999 699999999 8866544 556677777775543
No 58
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=57.01 E-value=11 Score=30.96 Aligned_cols=40 Identities=10% Similarity=0.193 Sum_probs=27.6
Q ss_pred HHHHHhhcccEEEEecCCCcEEEEc------cCCCCCC-----------chhHHHHHHH
Q psy4919 29 HLILEAADGFLFVVACDTGRVVVTG------LGLPCSD-----------SVDIEKVREQ 70 (96)
Q Consensus 29 ~l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d-----------p~D~~e~~eq 70 (96)
.++..|.+|+ +++.. +|+|+|++ +||...+ ++|.+.++..
T Consensus 522 ~lle~a~~~i-~~~D~-~grI~~~N~a~~~l~G~s~~e~~g~~~l~~~~~~~~~~~~~i 578 (635)
T 4eho_A 522 SQVHASMQPV-LITDA-EGRILLMNDSFRDMLPAGSPSAVHLDDLAGFFVESNDFLRNV 578 (635)
T ss_dssp HHHHHCSSCC-EEEET-TCCEEEECHHHHTTSCSSCCCCCSSGGGTTSSSSCTHHHHHH
T ss_pred HHHHhCCCcE-EEECC-CCeEeeHHHHHHHHHCcChHHHcCcchhhccCCCCHHHHHHH
Confidence 3444555665 55676 99999998 8998877 5665555544
No 59
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=56.77 E-value=1.6 Score=26.31 Aligned_cols=29 Identities=3% Similarity=-0.024 Sum_probs=21.0
Q ss_pred HHHhhcccEEEEecCCCcEEEEc------cCCCCCC
Q psy4919 31 ILEAADGFLFVVACDTGRVVVTG------LGLPCSD 60 (96)
Q Consensus 31 ~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d 60 (96)
+++++.--++++.. +|+|+|+. +|+...+
T Consensus 17 il~~~~~~i~~~D~-~g~i~~~N~a~~~l~g~~~~e 51 (118)
T 3fg8_A 17 LYFQGGLGFMALDE-DLRIIYVNSGCLRHVRRSRDE 51 (118)
T ss_dssp SSSCTTCEEEEECT-TCBEEEECHHHHHHHTCCHHH
T ss_pred HHhhCCceEEEECC-CCeEEEECHHHHHHhCCCHHH
Confidence 34455444677886 99999999 8887655
No 60
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=54.57 E-value=4.3 Score=24.00 Aligned_cols=15 Identities=13% Similarity=0.135 Sum_probs=12.4
Q ss_pred CCcEEEEc------cCCCCCC
Q psy4919 46 TGRVVVTG------LGLPCSD 60 (96)
Q Consensus 46 ~G~IlyvS------Lg~~q~d 60 (96)
+|+|+|++ +||+..+
T Consensus 15 ~g~i~~~N~a~~~l~Gy~~~e 35 (109)
T 1n9l_A 15 DCPLVYASEGFYAMTGYGPDE 35 (109)
T ss_dssp TCCEEEECHHHHHHHCCCHHH
T ss_pred CCeEEEEchHHHHHHCcCHHH
Confidence 69999999 7887655
No 61
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=53.00 E-value=5.6 Score=26.76 Aligned_cols=21 Identities=10% Similarity=0.199 Sum_probs=17.1
Q ss_pred EEEEecCCCcEEEEc------cCCCCCC
Q psy4919 39 LFVVACDTGRVVVTG------LGLPCSD 60 (96)
Q Consensus 39 l~Vvs~~~G~IlyvS------Lg~~q~d 60 (96)
++++.. +|+|+|+. +||+..+
T Consensus 2 i~i~D~-~g~i~~~N~a~~~l~Gy~~~e 28 (227)
T 3ewk_A 2 VSITDL-QGRILYANDNFCAVSRYGREE 28 (227)
T ss_dssp EEEEET-TCBEEEECHHHHHHTTCCHHH
T ss_pred EEEECC-CCcEEehHHHHHHHHCcCHHH
Confidence 566776 99999999 8887765
No 62
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=51.73 E-value=24 Score=21.80 Aligned_cols=32 Identities=19% Similarity=0.341 Sum_probs=22.6
Q ss_pred EEEEecCCCcEEEEccCCCCCCchhHHHHHHHh
Q psy4919 39 LFVVACDTGRVVVTGLGLPCSDSVDIEKVREQL 71 (96)
Q Consensus 39 l~Vvs~~~G~IlyvSLg~~q~dp~D~~e~~eqL 71 (96)
+++|.. +|+|++...|+...+..+.++.-+.+
T Consensus 109 ~~lid~-~G~i~~~~~g~~~~~~~~l~~~i~~~ 140 (152)
T 3gl3_A 109 SFLIDR-NGKVLLQHVGFRPADKEALEQQILAA 140 (152)
T ss_dssp EEEECT-TSBEEEEEESCCTTTHHHHHHHHHHH
T ss_pred EEEECC-CCCEEEEEccCCCcCHHHHHHHHHHH
Confidence 578876 99999999998777644444443333
No 63
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=51.07 E-value=20 Score=23.74 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=19.5
Q ss_pred EEEEecCCCcEEEEccCCCCCCchhHHHH
Q psy4919 39 LFVVACDTGRVVVTGLGLPCSDSVDIEKV 67 (96)
Q Consensus 39 l~Vvs~~~G~IlyvSLg~~q~dp~D~~e~ 67 (96)
.|||.. +|+|.|+..+..+.+.-|.+++
T Consensus 124 tflID~-~G~I~~~~~~~~~~~~~~~~ei 151 (164)
T 4gqc_A 124 VFIVKP-DGTVAYKWVTDNPLNEPDYDEV 151 (164)
T ss_dssp EEEECT-TSBEEEEEECSCTTCCCCHHHH
T ss_pred EEEECC-CCEEEEEEEeCCCCCCCCHHHH
Confidence 489997 9999999876655553344443
No 64
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=50.33 E-value=5.7 Score=23.94 Aligned_cols=27 Identities=7% Similarity=0.241 Sum_probs=18.3
Q ss_pred HHhhcccEEEEe---cCCCcEEEEc------cCCCCCC
Q psy4919 32 LEAADGFLFVVA---CDTGRVVVTG------LGLPCSD 60 (96)
Q Consensus 32 LeAldGFl~Vvs---~~~G~IlyvS------Lg~~q~d 60 (96)
+++.+|++ ++. . +|+|+|++ +||++.+
T Consensus 32 ~~~~~~i~-~~d~~d~-~g~i~~~N~a~~~l~G~~~~e 67 (149)
T 3d72_A 32 VDTSVALI-LCDLKQK-DTPIVYASEAFLYMTGYSNAE 67 (149)
T ss_dssp CCTTSCEE-EEETTST-TCCEEEECHHHHHHHCCCHHH
T ss_pred hcCCccEE-EEeccCC-CCcEEEECHHHHHHHCcCHHH
Confidence 34446644 444 4 89999999 8887655
No 65
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=47.26 E-value=27 Score=22.34 Aligned_cols=32 Identities=19% Similarity=0.192 Sum_probs=24.6
Q ss_pred HHHHHHHhhcccEEEEecCCCcEEEEc------cCCCCC
Q psy4919 27 LKHLILEAADGFLFVVACDTGRVVVTG------LGLPCS 59 (96)
Q Consensus 27 l~~l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~ 59 (96)
.-..+++++.--++++.. +|+|+|+. ||+...
T Consensus 81 ~l~~il~~~~~gvi~~D~-~g~I~~~N~aa~~llg~~~~ 118 (190)
T 2jhe_A 81 ALSALLEALPEPVLSVDM-KSKVDMANPASCQLFGQKLD 118 (190)
T ss_dssp HHHHHHHHCSSCEEEECT-TCBEEEECHHHHHHHTSCHH
T ss_pred HHHHHHHhCCCcEEEEcC-CCCEEEEcHHHHHHhCCCHH
Confidence 345577888777788887 99999998 887543
No 66
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=46.87 E-value=33 Score=19.11 Aligned_cols=25 Identities=8% Similarity=0.151 Sum_probs=15.8
Q ss_pred HHHHHh---hcccEEEEecC--CCcEEEEc
Q psy4919 29 HLILEA---ADGFLFVVACD--TGRVVVTG 53 (96)
Q Consensus 29 ~l~LeA---ldGFl~Vvs~~--~G~IlyvS 53 (96)
..++++ +..-++++..+ +|+|+|++
T Consensus 19 ~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N 48 (138)
T 2l0w_A 19 DTIIRKFEGQSRKFIIANARVENCAVIYCN 48 (138)
T ss_dssp HHHHHHHTTTTSEEEEEESSSTTCBEEEEC
T ss_pred HHHHHHHhcCCCCEEEEecCCCCCEEEEeC
Confidence 344444 44445666532 79999999
No 67
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=44.24 E-value=5.3 Score=28.30 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=24.7
Q ss_pred HHHHhhcccEEEEecCCCcEEEEc------cCCCCCC
Q psy4919 30 LILEAADGFLFVVACDTGRVVVTG------LGLPCSD 60 (96)
Q Consensus 30 l~LeAldGFl~Vvs~~~G~IlyvS------Lg~~q~d 60 (96)
.+++++.--++++.. +|+|+|+. +||...+
T Consensus 12 ~i~~~~~~~i~~~d~-~g~i~~~N~a~~~l~G~~~~e 47 (349)
T 3a0r_A 12 SILESLETAIITLSK-DGRITEWNKKAEQLFGLKKEN 47 (349)
T ss_dssp SSGGGSSSEEEEEES-SSBCSCBCHHHHHHHSCCSTT
T ss_pred HHHhhhcCeEEEECC-CCCEEeeHHHHHHHhCCCHHH
Confidence 456777777888887 99999999 8988766
No 68
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0
Probab=42.99 E-value=28 Score=22.50 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=22.1
Q ss_pred EEEEecCCCcEEEEccCCCCCCchhHHHHHHHh
Q psy4919 39 LFVVACDTGRVVVTGLGLPCSDSVDIEKVREQL 71 (96)
Q Consensus 39 l~Vvs~~~G~IlyvSLg~~q~dp~D~~e~~eqL 71 (96)
.|+|.. +|+|+|+..+....+..|.+++.+.|
T Consensus 132 ~~liD~-~G~i~~~~~~~~~~~~~~~~~il~~l 163 (166)
T 3p7x_A 132 VFVLDA-DNKVVYKEIVSEGTDFPDFDAALAAY 163 (166)
T ss_dssp EEEECT-TCBEEEEEECSBTTSCCCHHHHHHHH
T ss_pred EEEECC-CCeEEEEEEcCCcccCCCHHHHHHHH
Confidence 588987 99999998665444434555655554
No 69
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=42.46 E-value=38 Score=22.49 Aligned_cols=28 Identities=29% Similarity=0.415 Sum_probs=20.3
Q ss_pred HHHHHHHHH-hhcccEEEEecCCCcEEEEc
Q psy4919 25 QELKHLILE-AADGFLFVVACDTGRVVVTG 53 (96)
Q Consensus 25 ~el~~l~Le-AldGFl~Vvs~~~G~IlyvS 53 (96)
+.|..++-. .++|+++++.. +|.|+|-+
T Consensus 150 ~~l~~~~~~~~~gg~~~l~d~-~G~ii~~~ 178 (217)
T 4dah_A 150 DYLKNLINLLSPDVYIEVVNQ-DGKMIFAS 178 (217)
T ss_dssp HHHHHHHHHHCTTSCEEEEET-TSCEEEEE
T ss_pred HHHHHHHHhcCCCcEEEEEcC-CCCEEEeC
Confidence 344444332 34799999998 99999988
No 70
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=41.54 E-value=14 Score=30.24 Aligned_cols=18 Identities=28% Similarity=0.444 Sum_probs=16.3
Q ss_pred cccEEEEecCCCcEEEEc
Q psy4919 36 DGFLFVVACDTGRVVVTG 53 (96)
Q Consensus 36 dGFl~Vvs~~~G~IlyvS 53 (96)
=|+|+|+...++.|+++|
T Consensus 34 ~G~Ll~~~~~~~~i~~~S 51 (635)
T 4eho_A 34 HGALLVVSEPDHRIIQAS 51 (635)
T ss_dssp TEEEEEECTTTCBEEEEE
T ss_pred CeEEEEEECCCCeEEEEe
Confidence 599999987689999999
No 71
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=41.29 E-value=16 Score=30.13 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=21.2
Q ss_pred cccEEEEecCCCcEEEEc------cCCCCCC
Q psy4919 36 DGFLFVVACDTGRVVVTG------LGLPCSD 60 (96)
Q Consensus 36 dGFl~Vvs~~~G~IlyvS------Lg~~q~d 60 (96)
-|||+|+..++++|+++| ||..+.+
T Consensus 29 hG~LLal~~~~~~I~~~S~N~~~~lg~~~~~ 59 (520)
T 3zq5_A 29 HGLVVVLQEPDLTISQISANCTGILGRSPED 59 (520)
T ss_dssp TSEEEEEETTTTEEEEEETTHHHHHSCCHHH
T ss_pred CeEEEEEECCCCEEEEEcccHHHHhCcChHH
Confidence 499999998799999999 8876544
No 72
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Probab=40.24 E-value=26 Score=22.35 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=16.7
Q ss_pred EEEEecCCCcEEEEccCCCCCC
Q psy4919 39 LFVVACDTGRVVVTGLGLPCSD 60 (96)
Q Consensus 39 l~Vvs~~~G~IlyvSLg~~q~d 60 (96)
.++|.. +|+|+|...|....+
T Consensus 131 ~~lid~-~G~i~~~~~g~~~~~ 151 (167)
T 2jsy_A 131 VFVLDE-NGKVVYAEYVSEATN 151 (167)
T ss_dssp EEEECT-TSCEEEEEECSBTTS
T ss_pred EEEEcC-CCcEEEEEecCCcCC
Confidence 789987 999999997764443
No 73
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=40.23 E-value=11 Score=20.14 Aligned_cols=8 Identities=13% Similarity=0.135 Sum_probs=7.3
Q ss_pred CCcEEEEc
Q psy4919 46 TGRVVVTG 53 (96)
Q Consensus 46 ~G~IlyvS 53 (96)
+|+|+|++
T Consensus 13 ~g~i~~~N 20 (110)
T 1byw_A 13 NCAVIYCN 20 (110)
T ss_dssp SCBEEEEC
T ss_pred CCcEEEEC
Confidence 59999999
No 74
>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A
Probab=38.86 E-value=33 Score=23.43 Aligned_cols=32 Identities=13% Similarity=0.135 Sum_probs=23.3
Q ss_pred EEEEecCCCcEEEEccCCCCCCchhHHHHHHHh
Q psy4919 39 LFVVACDTGRVVVTGLGLPCSDSVDIEKVREQL 71 (96)
Q Consensus 39 l~Vvs~~~G~IlyvSLg~~q~dp~D~~e~~eqL 71 (96)
.|||.. +|+|+|+.++....+..|.+++-+.|
T Consensus 168 ~~lID~-~G~I~~~~~~~~~~~~~~~~~~l~~L 199 (200)
T 3zrd_A 168 VVVLDG-QDNVIYSELVNEITTEPNYDAALAAL 199 (200)
T ss_dssp EEEECT-TSBEEEEEECSBTTSCCCHHHHHHHH
T ss_pred EEEECC-CCeEEEEEecCCcccCCCHHHHHHhh
Confidence 589987 99999999776555555566655544
No 75
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=38.21 E-value=24 Score=20.93 Aligned_cols=22 Identities=5% Similarity=0.137 Sum_probs=16.5
Q ss_pred HHHhhcccEEEEecCCCcEEEEc
Q psy4919 31 ILEAADGFLFVVACDTGRVVVTG 53 (96)
Q Consensus 31 ~LeAldGFl~Vvs~~~G~IlyvS 53 (96)
+|+++.==++++.. +|+|+|+.
T Consensus 10 il~~~~~gviv~D~-~g~I~~~N 31 (121)
T 4hi4_A 10 ALDNVSANVMIADN-DLNIIYMN 31 (121)
T ss_dssp HHTTSSSEEEEEET-TCBEEEEC
T ss_pred HHhcCCccEEEEcC-CCeEEEec
Confidence 45555445677776 99999999
No 76
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}
Probab=37.70 E-value=44 Score=20.58 Aligned_cols=35 Identities=14% Similarity=0.098 Sum_probs=24.4
Q ss_pred cEEEEecCCCcEEEEccCCCCCCchhHHHHHHHhCC
Q psy4919 38 FLFVVACDTGRVVVTGLGLPCSDSVDIEKVREQLST 73 (96)
Q Consensus 38 Fl~Vvs~~~G~IlyvSLg~~q~dp~D~~e~~eqL~~ 73 (96)
.+++|.. +|+|++...|+...++.+..++-+.|..
T Consensus 109 ~~~lid~-~G~i~~~~~g~~~~~~~~l~~~l~~l~~ 143 (154)
T 3kcm_A 109 ETFVIDR-HGVILKKVVGAMEWDHPEVIAFLNNELS 143 (154)
T ss_dssp EEEEECT-TSBEEEEEESCCCTTSHHHHHHHHTC--
T ss_pred eEEEECC-CCcEEEEEcCCCccccHHHHHHHHHHHH
Confidence 3688887 9999999888877665555555555543
No 77
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=37.07 E-value=29 Score=24.06 Aligned_cols=22 Identities=5% Similarity=0.137 Sum_probs=16.1
Q ss_pred HHHhhcccEEEEecCCCcEEEEc
Q psy4919 31 ILEAADGFLFVVACDTGRVVVTG 53 (96)
Q Consensus 31 ~LeAldGFl~Vvs~~~G~IlyvS 53 (96)
+|+++.-=++++.. +|+|+|+.
T Consensus 27 iLd~~~~~vii~D~-~g~I~~~N 48 (233)
T 3vol_A 27 ALDNVSANVMIADN-DLNIIYMN 48 (233)
T ss_dssp HHTTSSSEEEEEET-TSBEEEEC
T ss_pred HHhcCCCcEEEECC-CCcEEEec
Confidence 35554445677887 99999999
No 78
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10
Probab=36.05 E-value=36 Score=21.97 Aligned_cols=33 Identities=15% Similarity=0.097 Sum_probs=23.1
Q ss_pred cEEEEecCCCcEEEEccCCCCCCchhHHHHHHHh
Q psy4919 38 FLFVVACDTGRVVVTGLGLPCSDSVDIEKVREQL 71 (96)
Q Consensus 38 Fl~Vvs~~~G~IlyvSLg~~q~dp~D~~e~~eqL 71 (96)
..++|.. +|+|+|...|....+..+.+++.+.|
T Consensus 132 ~~~liD~-~G~i~~~~~~~~~~~~~~~~~~l~~l 164 (165)
T 1q98_A 132 AVIVLDE-QNNVLHSQLVEEIKEEPNYEAALAVL 164 (165)
T ss_dssp EEEEECT-TSBEEEEEECSBTTSCCCHHHHHHTT
T ss_pred eEEEEcC-CCEEEEEEeCCCCCCCCCHHHHHHhh
Confidence 4688887 99999999775554545566655443
No 79
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10
Probab=35.60 E-value=43 Score=21.50 Aligned_cols=33 Identities=9% Similarity=0.038 Sum_probs=22.2
Q ss_pred cEEEEecCCCcEEEEccCCCCCCchhHHHHHHHh
Q psy4919 38 FLFVVACDTGRVVVTGLGLPCSDSVDIEKVREQL 71 (96)
Q Consensus 38 Fl~Vvs~~~G~IlyvSLg~~q~dp~D~~e~~eqL 71 (96)
..+||.. +|+|+|...|....+..+.+++.+.|
T Consensus 128 ~~~liD~-~G~i~~~~~g~~~~~~~~~~~~l~~l 160 (163)
T 1psq_A 128 AVFVLDT-DNTIRYVEYVDNINSEPNFEAAIAAA 160 (163)
T ss_dssp EEEEECT-TCBEEEEEECSBTTSCCCHHHHHHHH
T ss_pred EEEEEcC-CCeEEEEEecCCcCCCCCHHHHHHHH
Confidence 4788987 99999999876554433444444433
No 80
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=33.58 E-value=60 Score=21.24 Aligned_cols=31 Identities=16% Similarity=0.081 Sum_probs=23.1
Q ss_pred CCChHHHHHHHHHhhcccEEEEecCCCcEEEEc
Q psy4919 21 FLTDQELKHLILEAADGFLFVVACDTGRVVVTG 53 (96)
Q Consensus 21 fls~~el~~l~LeAldGFl~Vvs~~~G~IlyvS 53 (96)
.|+.+++. .+|+++.-=++++.. +|+|+|++
T Consensus 15 ~l~~~~l~-~IL~~~~~gI~~vD~-~g~I~~~N 45 (151)
T 2qkp_A 15 YLSVEQAN-LILNHLPLEITFVNK-DDIFQYYN 45 (151)
T ss_dssp EECHHHHH-HHHHHSSSEEEEEET-TSBEEEEC
T ss_pred EecHHHHH-HHHHhCCCceEEEcC-CCeEEEEe
Confidence 45566655 467788766778887 99999997
No 81
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=31.82 E-value=24 Score=28.92 Aligned_cols=38 Identities=24% Similarity=0.382 Sum_probs=27.7
Q ss_pred cccEEEEecCCCcEEEEc------cCCCCC------C----chhHHHHHHHhCCC
Q psy4919 36 DGFLFVVACDTGRVVVTG------LGLPCS------D----SVDIEKVREQLSTQ 74 (96)
Q Consensus 36 dGFl~Vvs~~~G~IlyvS------Lg~~q~------d----p~D~~e~~eqL~~~ 74 (96)
-|||+|+.. ++.|+++| ||..+. + +...+.+++.|...
T Consensus 26 hG~Ll~l~~-~~~I~~~S~N~~~~lg~~~~lG~~l~~~ll~~~~~~~l~~~l~~~ 79 (505)
T 3nhq_A 26 HGALVTLRA-DGMVLAASENIQALLGFVASPGSYLTQEQVGPEVLRMLEEGLTGN 79 (505)
T ss_dssp TEEEEEECT-TSBEEEEETTHHHHHSSCCCTTCBCCHHHHHHHHHHHHHHHHSCS
T ss_pred CeEEEEEcC-CCeEEEEcccHHHHhCcccccCCchhhhhCCHHHHHHHHHHhhcc
Confidence 599999998 99999999 776531 1 34456777777654
No 82
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=30.39 E-value=13 Score=26.35 Aligned_cols=28 Identities=7% Similarity=0.177 Sum_probs=18.8
Q ss_pred HHhhcccEEEEecC---CCcEEEEc------cCCCCCC
Q psy4919 32 LEAADGFLFVVACD---TGRVVVTG------LGLPCSD 60 (96)
Q Consensus 32 LeAldGFl~Vvs~~---~G~IlyvS------Lg~~q~d 60 (96)
++.+.--++++. . +|+|+|++ +||.+.+
T Consensus 17 ~~~~~~~i~~~D-~~~~~g~i~~~N~a~~~l~G~~~~e 53 (332)
T 2wkq_A 17 LERIEKNFVITD-PRLPDNPIIFASDSFLQLTEYSREE 53 (332)
T ss_dssp GGGCCSEEEEEC-TTSTTCCEEEECHHHHHHHCCCHHH
T ss_pred hhcCCCcEEEec-CCCCCCCEEEeehHHHHHhCCCHHH
Confidence 344444445554 3 89999999 8887655
No 83
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=29.62 E-value=71 Score=19.93 Aligned_cols=31 Identities=23% Similarity=0.317 Sum_probs=21.0
Q ss_pred EEEEecCCCcEEEEccCCCCCCchhHHHHHHHh
Q psy4919 39 LFVVACDTGRVVVTGLGLPCSDSVDIEKVREQL 71 (96)
Q Consensus 39 l~Vvs~~~G~IlyvSLg~~q~dp~D~~e~~eqL 71 (96)
.++|.. +|+|+|...|.. .+..+.+++.+.|
T Consensus 125 ~~lid~-~G~i~~~~~g~~-~~~~~~~~l~~~l 155 (160)
T 1xvw_A 125 TFVVDR-SGIIRFAEMKQP-GEVRDQRLWTDAL 155 (160)
T ss_dssp EEEECT-TSBEEEEEECCT-TCCCCHHHHHHHH
T ss_pred EEEECC-CCeEEEEEecCC-CCCCCHHHHHHHH
Confidence 788887 999999998763 2333555555444
No 84
>3ub6_A Chemoreceptor TLPB; homodimer, four-helix bundle, PAS domain, membrane protein; 1.38A {Helicobacter pylori} PDB: 3ub7_A 3ub8_A 3ub9_A*
Probab=28.55 E-value=80 Score=21.63 Aligned_cols=31 Identities=16% Similarity=0.296 Sum_probs=22.5
Q ss_pred CChHHHHHHHHHhh-------c-ccEEEEecCCCcEEEEc
Q psy4919 22 LTDQELKHLILEAA-------D-GFLFVVACDTGRVVVTG 53 (96)
Q Consensus 22 ls~~el~~l~LeAl-------d-GFl~Vvs~~~G~IlyvS 53 (96)
++.+|....+++++ + |++||+.. +|.++.-.
T Consensus 47 ~~~~ea~~~a~~~l~~~r~g~~~gY~fv~d~-~g~~l~hP 85 (181)
T 3ub6_A 47 FDNDTARKMALDYFKRINDDKGMIYMVVVDK-NGVVLFDP 85 (181)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCSSCEEEEECT-TCBEEECT
T ss_pred CCHHHHHHHHHHHHHhCccCCCCCEEEEEeC-CCCEEEeC
Confidence 56677766666554 3 79999997 99987653
No 85
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=27.79 E-value=27 Score=22.06 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=14.5
Q ss_pred HHhhcccEEEEecCCCcEEEEc
Q psy4919 32 LEAADGFLFVVACDTGRVVVTG 53 (96)
Q Consensus 32 LeAldGFl~Vvs~~~G~IlyvS 53 (96)
|++ +|-|-.|-.|+|+.+|||
T Consensus 45 Le~-~g~ltGViDDRGKfIyIs 65 (72)
T 1wi9_A 45 LLT-EGTLTGVIDDRGKFIYIT 65 (72)
T ss_dssp HHH-HSSSCEEECTTCCEEECC
T ss_pred HHH-CCCeEEEEeCCCCEEEec
Confidence 455 444544444799999999
No 86
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=25.78 E-value=97 Score=20.12 Aligned_cols=37 Identities=8% Similarity=0.055 Sum_probs=23.5
Q ss_pred cEEEEecCCCcEEEEccCCCCCCchhHHH-HHHHhCCCCC
Q psy4919 38 FLFVVACDTGRVVVTGLGLPCSDSVDIEK-VREQLSTQEP 76 (96)
Q Consensus 38 Fl~Vvs~~~G~IlyvSLg~~q~dp~D~~e-~~eqL~~~~~ 76 (96)
.+++|.. +|+|+++-.|... ++++..+ +++.+..+++
T Consensus 129 ~~~lID~-~G~i~~~~~g~~~-~~~~i~~~l~~~~~~~~~ 166 (170)
T 3me7_A 129 VVVVLSP-ELQIKDYIYGVNY-NYLEFVNALRLARGEGHH 166 (170)
T ss_dssp EEEEECT-TSBEEEEEESSSC-CHHHHHHHHHHHTTCSCT
T ss_pred eEEEECC-CCeEEEEEeCCCC-CHHHHHHHHHHhhccccc
Confidence 3789997 9999988766643 3555443 4444444444
No 87
>1wzz_A Probable endoglucanase; glycoside hydrolase family 8 (GH-8), (alpha/alpha)6 barrel, structural genomics; 1.65A {Gluconacetobacter xylinus} SCOP: a.102.1.2
Probab=25.73 E-value=11 Score=28.99 Aligned_cols=35 Identities=17% Similarity=0.307 Sum_probs=26.9
Q ss_pred chhHHHHHHHhCCCCCCCccccccccccee-eccCC
Q psy4919 61 SVDIEKVREQLSTQEPQNAGRILDLKTGTV-KKEGH 95 (96)
Q Consensus 61 p~D~~e~~eqL~~~~~~~~~r~~d~kt~~~-~~~~~ 95 (96)
|++.+..+++....-+.+.||+||..++.+ .+|+|
T Consensus 16 ~~~~~~~w~~~k~~~l~~~GrviD~~n~~~t~SEGq 51 (334)
T 1wzz_A 16 PDAVAQQWAIFRAKYLRPSGRVVDTGNGGESHSEGQ 51 (334)
T ss_dssp TTHHHHHHHHHHHHHBCTTSCBCCSSSSCEEEHHHH
T ss_pred cHHHHHHHHHHHHHhcCCCceEEecCCCCEEecHHH
Confidence 777777777766666667899999998866 77765
No 88
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A
Probab=25.03 E-value=84 Score=20.41 Aligned_cols=32 Identities=19% Similarity=0.197 Sum_probs=20.8
Q ss_pred cEEEEecCCCcEEEEccCCCCCCchhHHHHHHH
Q psy4919 38 FLFVVACDTGRVVVTGLGLPCSDSVDIEKVREQ 70 (96)
Q Consensus 38 Fl~Vvs~~~G~IlyvSLg~~q~dp~D~~e~~eq 70 (96)
..+||.. +|+|+|...|....+..+.+++-+.
T Consensus 131 ~~~lid~-~G~I~~~~~g~~~~~~~~~~~~l~~ 162 (175)
T 1xvq_A 131 AIVVIGA-DGNVAYTELVPEIAQEPNYEAALAA 162 (175)
T ss_dssp EEEEECT-TSBEEEEEECSBTTCCCCHHHHHHH
T ss_pred eEEEECC-CCeEEEEEECCCcCCCCCHHHHHHH
Confidence 3788887 9999999975444343344444333
No 89
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}
Probab=24.71 E-value=60 Score=20.87 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=15.4
Q ss_pred cEEEEecCCCcEEEEccCCC
Q psy4919 38 FLFVVACDTGRVVVTGLGLP 57 (96)
Q Consensus 38 Fl~Vvs~~~G~IlyvSLg~~ 57 (96)
..+||.. +|+|+|+..|..
T Consensus 135 ~~~liD~-~G~i~~~~~~~~ 153 (171)
T 2yzh_A 135 AVFIIDK-EGKVAYVQLVPE 153 (171)
T ss_dssp EEEEECT-TSBEEEEEECSB
T ss_pred EEEEEcC-CCeEEEEEeCCC
Confidence 4789987 999999986643
No 90
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=23.30 E-value=40 Score=21.41 Aligned_cols=32 Identities=13% Similarity=0.130 Sum_probs=20.8
Q ss_pred cEEEEecCCCcEEEEccCCCCCC--chhHHHHHHHh
Q psy4919 38 FLFVVACDTGRVVVTGLGLPCSD--SVDIEKVREQL 71 (96)
Q Consensus 38 Fl~Vvs~~~G~IlyvSLg~~q~d--p~D~~e~~eqL 71 (96)
..+|| . +|+|+|+..|+...+ ....+++++.|
T Consensus 120 ~~~li-~-~G~i~~~~~g~~~~~~~~~~~~~l~~~l 153 (159)
T 2a4v_A 120 SHFIF-V-DGKLKFKRVKISPEVSVNDAKKEVLEVA 153 (159)
T ss_dssp EEEEE-E-TTEEEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred eEEEE-c-CCEEEEEEccCCccccHHHHHHHHHHHH
Confidence 36777 7 999999997765433 33445555444
No 91
>2gx5_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, GAF domain; HET: PG4 P6G PCG PGE; 1.74A {Bacillus subtilis} PDB: 2b18_A 2hgv_A*
Probab=21.68 E-value=1.4e+02 Score=21.11 Aligned_cols=33 Identities=18% Similarity=0.291 Sum_probs=28.8
Q ss_pred CCCChHHHHHHHHHhhcccEEEEecCCCcEEEEc
Q psy4919 20 SFLTDQELKHLILEAADGFLFVVACDTGRVVVTG 53 (96)
Q Consensus 20 sfls~~el~~l~LeAldGFl~Vvs~~~G~IlyvS 53 (96)
..+.-+|+...+-+.+++=++|++. +|+|+-.+
T Consensus 30 ~~v~f~eia~vLs~vL~~NvyIvs~-~GkiLG~~ 62 (170)
T 2gx5_A 30 KPVNFKEMAETLRDVIDSNIFVVSR-RGKLLGYS 62 (170)
T ss_dssp SCCCHHHHHHHHHHHHTSEEEEEET-TSBEEEEE
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEcC-CCCEEEEe
Confidence 4567889999999999999999998 99997666
No 92
>3ajb_B Peroxisomal biogenesis factor 19; all alpha, protein-protein complex, protein transport; 2.50A {Homo sapiens}
Probab=21.02 E-value=28 Score=20.62 Aligned_cols=15 Identities=47% Similarity=0.725 Sum_probs=13.0
Q ss_pred hHHHHHHHHHhhccc
Q psy4919 24 DQELKHLILEAADGF 38 (96)
Q Consensus 24 ~~el~~l~LeAldGF 38 (96)
+.||..|+-.||+.|
T Consensus 20 d~ELdeLLDSALeDF 34 (49)
T 3ajb_B 20 DRELEELLESALDDF 34 (49)
T ss_dssp CCHHHHHHHHHHTHH
T ss_pred cHHHHHHHHHHHHhh
Confidence 349999999999988
No 93
>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown function, uncharacterized protein; 1.50A {Vibrio cholerae o1 biovar eltor str}
Probab=20.82 E-value=60 Score=21.08 Aligned_cols=29 Identities=28% Similarity=0.500 Sum_probs=19.5
Q ss_pred hHHHHHHHHHh---hcccEEEEecCCCcEEEEc
Q psy4919 24 DQELKHLILEA---ADGFLFVVACDTGRVVVTG 53 (96)
Q Consensus 24 ~~el~~l~LeA---ldGFl~Vvs~~~G~IlyvS 53 (96)
-+.|..++-.. -+|+++++.. +|.|++-+
T Consensus 144 ~~~l~~~~~~~~~~~~g~~~l~d~-~G~ii~~~ 175 (240)
T 3c8c_A 144 LAELAELVNEVKLFDAGYVFIVSE-DGTTIAHP 175 (240)
T ss_dssp HHHHHHHHTCSCCTTSEEEEEEET-TSBEEECS
T ss_pred HHHHHHHHHhcccCCceEEEEEcC-CCcEEEeC
Confidence 34455544321 2589999997 99999855
No 94
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=20.67 E-value=1.3e+02 Score=18.81 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=18.9
Q ss_pred EEEEecCCCcEEEEccCCCCCCchhHH
Q psy4919 39 LFVVACDTGRVVVTGLGLPCSDSVDIE 65 (96)
Q Consensus 39 l~Vvs~~~G~IlyvSLg~~q~dp~D~~ 65 (96)
+++|.. +|+|++...|....++++..
T Consensus 139 ~~lid~-~G~i~~~~~g~~~~~~~~l~ 164 (174)
T 1xzo_A 139 FYLVGP-DGKVLKDYNGVENTPYDDII 164 (174)
T ss_dssp EEEECT-TSEEEEEEESSSSCCHHHHH
T ss_pred EEEECC-CCeEEEEEcCCCCCCHHHHH
Confidence 588887 99999998777654444433
No 95
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=20.37 E-value=1.5e+02 Score=18.86 Aligned_cols=28 Identities=25% Similarity=0.034 Sum_probs=20.2
Q ss_pred cEEEEecCCCcEEEEccCCCCCCchhHHH
Q psy4919 38 FLFVVACDTGRVVVTGLGLPCSDSVDIEK 66 (96)
Q Consensus 38 Fl~Vvs~~~G~IlyvSLg~~q~dp~D~~e 66 (96)
.++||.. +|+|++...|....++.+..+
T Consensus 146 ~~~lid~-~G~i~~~~~g~~~~~~~~l~~ 173 (186)
T 1jfu_A 146 TSVLVDP-QGCEIATIAGPAEWASEDALK 173 (186)
T ss_dssp EEEEECT-TSBEEEEEESCCCTTSHHHHH
T ss_pred EEEEECC-CCCEEEEEecCCccCHHHHHH
Confidence 4688887 999999988876545555444
No 96
>3by9_A Sensor protein; histidine kinase sensor domain, phosphoprotein, transferase, two-component regulatory system; 1.70A {Vibrio cholerae}
Probab=20.11 E-value=59 Score=21.75 Aligned_cols=18 Identities=6% Similarity=0.150 Sum_probs=15.9
Q ss_pred hcccEEEEecCCCcEEEEc
Q psy4919 35 ADGFLFVVACDTGRVVVTG 53 (96)
Q Consensus 35 ldGFl~Vvs~~~G~IlyvS 53 (96)
-+|+++++.. +|.|++-+
T Consensus 162 ~~g~~~l~d~-~G~ii~~~ 179 (260)
T 3by9_A 162 KSSYFVATDD-HQVVFMSS 179 (260)
T ss_dssp SSCEEEEECT-TCBEEEES
T ss_pred CCCcEEEECC-CCeEEEcC
Confidence 4799999997 99999876
Done!