RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4919
         (96 letters)



>d2oola2 d.110.3.9 (A:26-139) Sensor protein PhyB2
          {Rhodopseudomonas palustris [TaxId: 1076]}
          Length = 114

 Score = 30.2 bits (68), Expect = 0.015
 Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 17/64 (26%)

Query: 37 GFLFVVACDTGRVV--------------VTGLGLPCSD---SVDIEKVREQLSTQEPQNA 79
          G+LFVV+    R+                + L +P +    +    ++   L   +P   
Sbjct: 18 GYLFVVSETDLRIASVSANVEDLLRQPPASLLNVPIAHYLTAASAARLTHALHGGDPAAI 77

Query: 80 GRIL 83
            I 
Sbjct: 78 NPIR 81


>d2vbaa1 c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I
          {Escherichia coli [TaxId: 562]}
          Length = 253

 Score = 29.2 bits (64), Expect = 0.052
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 48 RVVVTGLGLPCSDSVDIEKVREQL 71
          R V+TGLG+  S   + ++V   L
Sbjct: 3  RAVITGLGIVSSIGNNQQEVLASL 26


>d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale
          cress (Arabidopsis thaliana), mitochondrial isoform
          [TaxId: 3702]}
          Length = 270

 Score = 28.8 bits (63), Expect = 0.084
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 48 RVVVTGLGLPCSDSVDIEKVREQL 71
          RVVVTGLG+       +E    +L
Sbjct: 2  RVVVTGLGMVTPLGRGVETTWRRL 25


>d1tqya1 c.95.1.1 (A:3-218) Actinorhodin polyketide putative
          beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor
          [TaxId: 1902]}
          Length = 216

 Score = 28.5 bits (62), Expect = 0.11
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 48 RVVVTGLGLPCSDSVDIEKVREQL 71
          RVV+TG+G+         +  E L
Sbjct: 2  RVVITGVGVRAPGGNGTRQFWELL 25


>d1ox0a1 c.95.1.1 (A:-5-251) Beta-ketoacyl-ACP synthase II
          {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 256

 Score = 27.9 bits (61), Expect = 0.18
 Identities = 9/24 (37%), Positives = 11/24 (45%)

Query: 48 RVVVTGLGLPCSDSVDIEKVREQL 71
          RVVVTG G+        E+    L
Sbjct: 10 RVVVTGYGVTSPIGNTPEEFWNSL 33


>d1j3na1 c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II {Thermus
          thermophilus [TaxId: 274]}
          Length = 249

 Score = 27.4 bits (60), Expect = 0.28
 Identities = 10/24 (41%), Positives = 11/24 (45%)

Query: 48 RVVVTGLGLPCSDSVDIEKVREQL 71
          RVVVTGLG      V  E   +  
Sbjct: 3  RVVVTGLGALTPIGVGQEAFHKAQ 26


>d1e5ma1 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II
          {Synechocystis sp. [TaxId: 1143]}
          Length = 250

 Score = 27.2 bits (59), Expect = 0.29
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query: 48 RVVVTGLGLPCSDSVDIEKVREQL 71
          RVVVTGLG        ++   + L
Sbjct: 3  RVVVTGLGAITPIGNTLQDYWQGL 26


>d2gfva1 c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II
          {Escherichia coli [TaxId: 562]}
          Length = 250

 Score = 27.1 bits (59), Expect = 0.31
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 48 RVVVTGLGLPCSDSVDIEKVREQL 71
          RVVVTGLG+       +E   + L
Sbjct: 3  RVVVTGLGMLSPVGNTVESTWKAL 26


>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa
           (LmjF30.0810) {Leishmania major [TaxId: 5664]}
          Length = 254

 Score = 26.9 bits (58), Expect = 0.36
 Identities = 10/35 (28%), Positives = 14/35 (40%)

Query: 55  GLPCSDSVDIEKVREQLSTQEPQNAGRILDLKTGT 89
           G+     VDIE  R  +++       R LD   G 
Sbjct: 70  GMDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGI 104


>d1k7ia2 d.92.1.6 (A:18-258) Metalloprotease {Erwinia chrysanthemi
          [TaxId: 556]}
          Length = 241

 Score = 26.4 bits (57), Expect = 0.65
 Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 2/28 (7%)

Query: 6  ERTGNTSTDGTYKPSFLTDQELKHLILE 33
          +R    + +G  K S+  DQ    +  E
Sbjct: 18 DRGDGLTVNG--KTSYSIDQAAAQITRE 43


>d1kapp2 d.92.1.6 (P:1-246) Metalloprotease {Pseudomonas
          aeruginosa [TaxId: 287]}
          Length = 246

 Score = 26.0 bits (56), Expect = 0.67
 Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 6  ERTGNTSTDGTYKPSFLTDQELKHLI 31
           R G+   +G   PS+  DQ  + ++
Sbjct: 17 ARGGDELVNG--HPSYTVDQAAEQIL 40


>d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative
          beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor
          [TaxId: 1902]}
          Length = 208

 Score = 25.8 bits (55), Expect = 0.79
 Identities = 4/23 (17%), Positives = 12/23 (52%)

Query: 49 VVVTGLGLPCSDSVDIEKVREQL 71
          V++TG+G+   + + +      +
Sbjct: 2  VLITGVGVVAPNGLGLAPYWSAV 24


>d1vetb_ d.110.7.1 (B:) Late endosomal/lysosomal Mp1 interacting
           protein p14 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 118

 Score = 24.8 bits (54), Expect = 1.6
 Identities = 4/46 (8%), Positives = 18/46 (39%), Gaps = 5/46 (10%)

Query: 26  ELKHLILEAADGFLFVVACDTGRVVVTGLGLPCSDSVDIEKVREQL 71
            LK ++++  +G + +       + +        ++V    ++ + 
Sbjct: 68  SLKFILMDCMEGRVAITRVANLLLCMY-----AKETVGFGMLKAKA 108


>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305
          {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
          Length = 251

 Score = 24.3 bits (51), Expect = 2.6
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 63 DIEKVREQLSTQEPQNAGRILDLKTGT 89
          +I+ V E       +   R+LDL  GT
Sbjct: 26 EIDFVEEIFKEDAKREVRRVLDLACGT 52


>d1rfxa_ g.77.1.1 (A:) Resistin (ADSF, FIZZ3) {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 89

 Score = 23.7 bits (51), Expect = 3.3
 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 58 CSDSVDIEKVREQLSTQEPQNAGRILDLKTGTVKKEG 94
            D    +K+++  ++  P NA + + L   TV   G
Sbjct: 2  PIDEAIDKKIKQDFNSLFP-NAIKNIGLNCWTVSSRG 37


>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus
           [TaxId: 1280]}
          Length = 319

 Score = 23.9 bits (50), Expect = 4.4
 Identities = 11/43 (25%), Positives = 15/43 (34%)

Query: 9   GNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVACDTGRVVV 51
                 G   P + T  E        +D  L+V     GRV+V
Sbjct: 211 VTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLV 253


>d1v05a_ b.1.18.10 (A:) Filamin C {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 96

 Score = 22.7 bits (48), Expect = 8.7
 Identities = 6/15 (40%), Positives = 8/15 (53%)

Query: 42 VACDTGRVVVTGLGL 56
          +  D  +VV  G GL
Sbjct: 2  MGSDASKVVTRGPGL 16


>d1fe0a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1)
          {Human (Homo sapiens), HAH1 [TaxId: 9606]}
          Length = 66

 Score = 22.1 bits (47), Expect = 9.9
 Identities = 4/40 (10%), Positives = 11/40 (27%), Gaps = 7/40 (17%)

Query: 32 LEAADGFLFVVACDTGRVVVTGLGLPCSDSVDIEKVREQL 71
          L    G  + +     +V +            ++ +   L
Sbjct: 22 LNKLGGVKYDIDLPNKKVCIES-------EHSMDTLLATL 54


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.132    0.371 

Gapped
Lambda     K      H
   0.267   0.0434    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 332,579
Number of extensions: 13323
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 22
Length of query: 96
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 37
Effective length of database: 1,597,526
Effective search space: 59108462
Effective search space used: 59108462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.6 bits)