BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4920
         (111 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q642R9|RB3GP_XENLA Rab3 GTPase-activating protein catalytic subunit OS=Xenopus laevis
           GN=rab3gap1 PE=2 SV=1
          Length = 978

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 38/60 (63%)

Query: 47  SGLKSCPPDGLVWRLAICSSHALYSMGGAKSFAHVWFEFVQELRYRWENSLRIPGVKKKS 106
           S LKS P + L ++LA+C     +  GG K  AH+W EFV E+RYRWEN+  IPG+   S
Sbjct: 447 SQLKSAPSNSLTYKLALCLCMVNFYHGGVKGVAHLWQEFVLEMRYRWENNFLIPGLANGS 506


>sp|Q6NUV0|RB3GP_DANRE Rab3 GTPase-activating protein catalytic subunit OS=Danio rerio
           GN=rab3gap1 PE=2 SV=2
          Length = 969

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 36/54 (66%)

Query: 49  LKSCPPDGLVWRLAICSSHALYSMGGAKSFAHVWFEFVQELRYRWENSLRIPGV 102
           LKSCP D L  RLA+C     +  GG ++ AH+W EFV E+RYRWEN+  I G+
Sbjct: 449 LKSCPSDSLTHRLALCICMVNFHHGGVRAVAHLWQEFVLEMRYRWENNCLIYGL 502


>sp|Q80UJ7|RB3GP_MOUSE Rab3 GTPase-activating protein catalytic subunit OS=Mus musculus
           GN=Rab3gap1 PE=2 SV=4
          Length = 981

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 36/58 (62%)

Query: 49  LKSCPPDGLVWRLAICSSHALYSMGGAKSFAHVWFEFVQELRYRWENSLRIPGVKKKS 106
            KS P D L ++LA+C     +  GG K  AH+W EFV E+R+RWEN+  IPG+   S
Sbjct: 447 FKSAPSDSLTYKLALCLCMINFYHGGLKGVAHLWQEFVLEMRFRWENNFLIPGLASGS 504


>sp|Q15042|RB3GP_HUMAN Rab3 GTPase-activating protein catalytic subunit OS=Homo sapiens
           GN=RAB3GAP1 PE=1 SV=3
          Length = 981

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 35/54 (64%)

Query: 49  LKSCPPDGLVWRLAICSSHALYSMGGAKSFAHVWFEFVQELRYRWENSLRIPGV 102
            KS P D L ++LA+C     +  GG K  AH+W EFV E+R+RWEN+  IPG+
Sbjct: 448 FKSAPSDSLTYKLALCLCMINFYHGGLKGVAHLWQEFVLEMRFRWENNFLIPGL 501


>sp|P69735|RB3GP_RAT Rab3 GTPase-activating protein catalytic subunit (Fragments)
           OS=Rattus norvegicus GN=Rab3gap1 PE=1 SV=2
          Length = 775

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 35/54 (64%)

Query: 49  LKSCPPDGLVWRLAICSSHALYSMGGAKSFAHVWFEFVQELRYRWENSLRIPGV 102
            KS P D L ++LA+C     +  GG K  AH+W EFV E+R+RWEN+  IPG+
Sbjct: 241 FKSAPSDSLTYKLALCLCMINFYHGGLKGVAHLWQEFVLEMRFRWENNFLIPGL 294


>sp|Q9VQ26|RB3GP_DROME Rab3 GTPase-activating protein catalytic subunit OS=Drosophila
           melanogaster GN=CG31935 PE=1 SV=2
          Length = 916

 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 8/58 (13%)

Query: 49  LKSCPPDGLVWRL----AICSSHALYSMGGAKSFAHVWFEFVQELRYRWENSLRIPGV 102
           +KS  PD LV RL    A C +H    +G  +  A VW  F ++LR  W+NSL +PG+
Sbjct: 445 IKSAVPDSLVCRLSCLLATCHAH----LGSVEGMAQVWAAFTRQLRLLWDNSLMVPGI 498


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.135    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,521,648
Number of Sequences: 539616
Number of extensions: 1531065
Number of successful extensions: 2764
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2757
Number of HSP's gapped (non-prelim): 7
length of query: 111
length of database: 191,569,459
effective HSP length: 79
effective length of query: 32
effective length of database: 148,939,795
effective search space: 4766073440
effective search space used: 4766073440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)