Query psy4920
Match_columns 111
No_of_seqs 55 out of 57
Neff 3.0
Searched_HMMs 29240
Date Fri Aug 16 21:14:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4920.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4920hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2q9k_A Uncharacterized protein 22.2 66 0.0023 22.1 2.9 20 71-90 131-150 (151)
2 1fli_A FLI-1; transcription/DN 21.8 89 0.0031 21.5 3.4 24 76-99 40-74 (98)
3 1bc8_C SAP-1, protein (SAP-1 E 21.8 81 0.0028 21.4 3.2 25 76-100 39-74 (93)
4 4avp_A ETS translocation varia 20.4 88 0.003 21.6 3.2 25 76-100 46-81 (106)
5 2ypr_A Protein FEV; transcript 20.1 80 0.0027 21.7 2.9 17 83-99 60-76 (102)
6 1wwx_A E74-like factor 5 ESE-2 19.9 91 0.0031 21.8 3.2 24 76-99 45-79 (107)
7 3jtg_A ETS-related transcripti 18.0 1.3E+02 0.0043 20.7 3.5 24 76-99 41-75 (103)
8 3mvu_A TENA family transcripti 17.5 53 0.0018 23.8 1.6 32 51-90 3-34 (226)
9 3r46_A Coiled coil helix L24D; 17.1 1.4E+02 0.0047 17.2 3.0 24 73-96 2-26 (35)
10 1hbx_G ETS-domain protein ELK- 16.7 1.2E+02 0.0042 22.6 3.4 24 76-99 40-74 (157)
No 1
>2q9k_A Uncharacterized protein; split barrel-like fold, structural genomics, joint center FO structural genomics, JCSG; HET: UNL; 1.59A {Exiguobacterium sibiricum}
Probab=22.20 E-value=66 Score=22.15 Aligned_cols=20 Identities=5% Similarity=-0.087 Sum_probs=17.6
Q ss_pred cccchHHHHHHHHHHHHHHH
Q psy4920 71 SMGGAKSFAHVWFEFVQELR 90 (111)
Q Consensus 71 ~~GGlravAhLW~EFV~ELR 90 (111)
...|.++...||.+...+||
T Consensus 131 ~~y~~~~a~~~~~~~~~~~k 150 (151)
T 2q9k_A 131 KTYDEAAAMQLDQQIQDILK 150 (151)
T ss_dssp CSSSHHHHHHHHHHHHHHHH
T ss_pred eccCHHHHHHHHHHHHHHhh
Confidence 35689999999999999987
No 2
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=21.80 E-value=89 Score=21.46 Aligned_cols=24 Identities=21% Similarity=0.531 Sum_probs=18.5
Q ss_pred HHHHHHHH-----------HHHHHHHHHHhcCccc
Q psy4920 76 KSFAHVWF-----------EFVQELRYRWENSLRI 99 (111)
Q Consensus 76 ravAhLW~-----------EFV~ELRyrWEn~~~I 99 (111)
..||.||- ..-|-|||+++.++.-
T Consensus 40 e~VArlWG~rK~kp~MnYeklSRaLRyYY~k~i~~ 74 (98)
T 1fli_A 40 DEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMT 74 (98)
T ss_dssp HHHHHHHHHHTCCTTCSSHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHhccCCCCcCHHHHHHHHHHHHHcCcEe
Confidence 55777884 5778999999988753
No 3
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*
Probab=21.79 E-value=81 Score=21.44 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=19.4
Q ss_pred HHHHHHHHH-----------HHHHHHHHHhcCcccc
Q psy4920 76 KSFAHVWFE-----------FVQELRYRWENSLRIP 100 (111)
Q Consensus 76 ravAhLW~E-----------FV~ELRyrWEn~~~IP 100 (111)
..||.||-. .-|-|||+++.++.-.
T Consensus 39 ~~VArlWG~rKnk~~MnYeklSRaLRyYY~~~il~K 74 (93)
T 1bc8_C 39 EEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKK 74 (93)
T ss_dssp HHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEe
Confidence 557778854 7889999999988643
No 4
>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A
Probab=20.37 E-value=88 Score=21.65 Aligned_cols=25 Identities=24% Similarity=0.502 Sum_probs=19.2
Q ss_pred HHHHHHHH-----------HHHHHHHHHHhcCcccc
Q psy4920 76 KSFAHVWF-----------EFVQELRYRWENSLRIP 100 (111)
Q Consensus 76 ravAhLW~-----------EFV~ELRyrWEn~~~IP 100 (111)
..||.||- .+.|-|||+++.++.-.
T Consensus 46 ~~VA~lWG~rKnkp~M~YeKlSRaLRyYY~kgii~K 81 (106)
T 4avp_A 46 EEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQK 81 (106)
T ss_dssp HHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCeEEe
Confidence 45777775 48899999999987643
No 5
>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A
Probab=20.06 E-value=80 Score=21.73 Aligned_cols=17 Identities=18% Similarity=0.426 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhcCccc
Q psy4920 83 FEFVQELRYRWENSLRI 99 (111)
Q Consensus 83 ~EFV~ELRyrWEn~~~I 99 (111)
..+.|-|||+++.++.-
T Consensus 60 eKlSRaLRyYY~k~ii~ 76 (102)
T 2ypr_A 60 DKLSRALRYYYDKNIMS 76 (102)
T ss_dssp HHHHHHHTHHHHTTSEE
T ss_pred HHHHHHHHHHHhcCcEE
Confidence 35778899999988753
No 6
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=19.92 E-value=91 Score=21.76 Aligned_cols=24 Identities=21% Similarity=0.562 Sum_probs=18.8
Q ss_pred HHHHHHHH-----------HHHHHHHHHHhcCccc
Q psy4920 76 KSFAHVWF-----------EFVQELRYRWENSLRI 99 (111)
Q Consensus 76 ravAhLW~-----------EFV~ELRyrWEn~~~I 99 (111)
..||.||- ..-|-|||+++.++.-
T Consensus 45 e~VArlWG~rKnkp~MnYeKlSRaLRyYY~~~ii~ 79 (107)
T 1wwx_A 45 EALAKMWGQRKKNDRMTYEKLSRALRYYYKTGILE 79 (107)
T ss_dssp HHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEE
Confidence 56777874 5688999999998864
No 7
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21
Probab=18.01 E-value=1.3e+02 Score=20.73 Aligned_cols=24 Identities=17% Similarity=0.524 Sum_probs=18.7
Q ss_pred HHHHHHHH-----------HHHHHHHHHHhcCccc
Q psy4920 76 KSFAHVWF-----------EFVQELRYRWENSLRI 99 (111)
Q Consensus 76 ravAhLW~-----------EFV~ELRyrWEn~~~I 99 (111)
..||.||- .+.|-|||+++.++.-
T Consensus 41 ~~VArlWG~rKnkp~MnYeKlSRaLRyYy~~~ii~ 75 (103)
T 3jtg_A 41 EAVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILE 75 (103)
T ss_dssp HHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSBC
T ss_pred HHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEE
Confidence 46777874 5788999999998763
No 8
>3mvu_A TENA family transcriptional regulator; TENA/THI-4/PQQC family, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP} SCOP: a.132.1.0
Probab=17.45 E-value=53 Score=23.83 Aligned_cols=32 Identities=22% Similarity=0.084 Sum_probs=20.3
Q ss_pred CCCCCchHHHHHHHHHhhhccccchHHHHHHHHHHHHHHH
Q psy4920 51 SCPPDGLVWRLAICSSHALYSMGGAKSFAHVWFEFVQELR 90 (111)
Q Consensus 51 SAP~dSL~~RLAl~~~~c~~~~GGlravAhLW~EFV~ELR 90 (111)
|+|++|++.+|--...-. --+-+-+.||++|.
T Consensus 3 ~~p~g~f~~~L~~~~~~~--------w~~~~~HPFv~~l~ 34 (226)
T 3mvu_A 3 SEPYGKAFSLMRAEAEPA--------WRAYTHHAFVEGLK 34 (226)
T ss_dssp CSTTCHHHHHHHHHTTTH--------HHHHHTCHHHHHHH
T ss_pred CCCCCcHHHHHHHhCHHH--------HHHHHCCHHHHHHH
Confidence 789999999987643221 11224467888775
No 9
>3r46_A Coiled coil helix L24D; coiled coil domain, parallel hexamer, KIH interactions, HYDR channel, synthetic biology, de novo protein; 1.75A {Synthetic} PDB: 3r48_A 3r47_A 3r3k_A* 3r48_B 3r4a_A
Probab=17.10 E-value=1.4e+02 Score=17.24 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=20.6
Q ss_pred cchHHHHHHHHHHHHHHHH-HHhcC
Q psy4920 73 GGAKSFAHVWFEFVQELRY-RWENS 96 (111)
Q Consensus 73 GGlravAhLW~EFV~ELRy-rWEn~ 96 (111)
|-++++|+--..+..||+- -||+.
T Consensus 2 gelkaiaqelkaiakelkaiawedk 26 (35)
T 3r46_A 2 GELKAIAQELKAIAKELKAIAWEDK 26 (35)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhhHH
Confidence 6688999999999999987 78864
No 10
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21
Probab=16.74 E-value=1.2e+02 Score=22.62 Aligned_cols=24 Identities=21% Similarity=0.445 Sum_probs=19.1
Q ss_pred HHHHHHHHH-----------HHHHHHHHHhcCccc
Q psy4920 76 KSFAHVWFE-----------FVQELRYRWENSLRI 99 (111)
Q Consensus 76 ravAhLW~E-----------FV~ELRyrWEn~~~I 99 (111)
..||.||-. .-|-|||+|+.++.-
T Consensus 40 e~VArLWG~rKnkp~MnYeKLSRALRyYY~k~Ii~ 74 (157)
T 1hbx_G 40 EEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIK 74 (157)
T ss_dssp HHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEE
Confidence 557778854 788999999998864
Done!