Query psy4920
Match_columns 111
No_of_seqs 55 out of 57
Neff 3.0
Searched_HMMs 13730
Date Fri Aug 16 21:15:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4920.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4920hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iyjb1 a.170.1.1 (B:2403-2598 16.7 37 0.0027 24.5 2.4 38 57-97 155-192 (196)
2 d1v54j_ f.23.4.1 (J:) Mitochon 15.0 23 0.0016 21.1 0.7 20 48-67 21-40 (58)
3 d1oyja1 a.45.1.1 (A:86-230) Cl 14.3 47 0.0034 20.5 2.2 13 76-88 16-28 (145)
4 d1idra_ a.1.1.1 (A:) Protozoan 12.5 59 0.0043 19.9 2.3 33 47-90 4-36 (127)
5 d1wkta_ b.11.1.2 (A:) Yeast ki 11.9 39 0.0028 21.4 1.2 13 29-41 45-57 (88)
6 d1xn7a_ a.4.5.62 (A:) Hypothet 11.6 61 0.0045 20.2 2.1 29 28-56 40-68 (78)
7 d1pgya_ a.5.2.1 (A:) Auxilin-l 10.8 21 0.0016 20.6 -0.4 17 5-21 9-25 (47)
8 d2fbqa2 a.121.1.1 (A:81-214) T 9.6 62 0.0045 20.2 1.6 31 48-78 68-98 (134)
9 d1flia_ a.4.5.21 (A:) Fli-1 {H 9.6 1.4E+02 0.01 18.8 3.4 25 75-99 39-74 (98)
10 d2hkua1 a.4.1.9 (A:18-87) Puta 9.5 81 0.0059 17.4 2.0 43 52-94 21-64 (70)
No 1
>d1iyjb1 a.170.1.1 (B:2403-2598) BRCA2 helical domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=16.74 E-value=37 Score=24.46 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=24.1
Q ss_pred hHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCc
Q psy4920 57 LVWRLAICSSHALYSMGGAKSFAHVWFEFVQELRYRWENSL 97 (111)
Q Consensus 57 L~~RLAl~~~~c~~~~GGlravAhLW~EFV~ELRyrWEn~~ 97 (111)
.+|+||.-....=..++|- ..=|.++.+||+||.|.-+
T Consensus 155 IVWKLA~mer~~P~~~~~~---~lt~~~Vl~QL~YRYerEI 192 (196)
T d1iyjb1 155 IVWKLAAMEFAFPKEFANR---CLNPERVLLQLKYRYDVEI 192 (196)
T ss_dssp HHHHHHHHHHHSTTTTTTT---SSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCchhhccC---cCCHHHHHHHHHHHHHHhh
Confidence 4788887443322233442 2238899999999998643
No 2
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=14.99 E-value=23 Score=21.13 Aligned_cols=20 Identities=20% Similarity=0.395 Sum_probs=18.2
Q ss_pred cCcCCCCCchHHHHHHHHHh
Q psy4920 48 GLKSCPPDGLVWRLAICSSH 67 (111)
Q Consensus 48 ~iKSAP~dSL~~RLAl~~~~ 67 (111)
++|.-+.|.+.+|+.+.+|.
T Consensus 21 hLKGG~~D~~LYr~Tm~L~~ 40 (58)
T d1v54j_ 21 HLKGGATDNILYRVTMTLCL 40 (58)
T ss_dssp TTTTCHHHHHHHHHHHHHHH
T ss_pred EecCCcchHHHHHHHHHHHH
Confidence 49999999999999998875
No 3
>d1oyja1 a.45.1.1 (A:86-230) Class tau GST {Rice (Oryza sativa) [TaxId: 4530]}
Probab=14.33 E-value=47 Score=20.49 Aligned_cols=13 Identities=23% Similarity=0.746 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHH
Q psy4920 76 KSFAHVWFEFVQE 88 (111)
Q Consensus 76 ravAhLW~EFV~E 88 (111)
||.+.+|.+||.+
T Consensus 16 RA~~R~W~~~vd~ 28 (145)
T d1oyja1 16 RATARFWADYVDR 28 (145)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888999999975
No 4
>d1idra_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbN [TaxId: 1773]}
Probab=12.54 E-value=59 Score=19.86 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=21.1
Q ss_pred ccCcCCCCCchHHHHHHHHHhhhccccchHHHHHHHHHHHHHHH
Q psy4920 47 SGLKSCPPDGLVWRLAICSSHALYSMGGAKSFAHVWFEFVQELR 90 (111)
Q Consensus 47 ~~iKSAP~dSL~~RLAl~~~~c~~~~GGlravAhLW~EFV~ELR 90 (111)
.++.+-++.||..|+ ||-.+|..+=..|...+.
T Consensus 4 ~~~~~~~~~SLyerl-----------GG~~~I~~lv~~FY~~i~ 36 (127)
T d1idra_ 4 SRLRKREPISIYDKI-----------GGHEAIEVVVEDFYVRVL 36 (127)
T ss_dssp HHHHTTCCCCHHHHT-----------THHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCHHHHh-----------CCHHHHHHHHHHHHHHHH
Confidence 345556777876664 666777776666666654
No 5
>d1wkta_ b.11.1.2 (A:) Yeast killer toxin {Williopsis mrakii [TaxId: 4963]}
Probab=11.86 E-value=39 Score=21.38 Aligned_cols=13 Identities=23% Similarity=0.366 Sum_probs=10.0
Q ss_pred cccceeeeecccc
Q psy4920 29 ESIGCQIIKQDDV 41 (111)
Q Consensus 29 ~~~g~~~~~~~~~ 41 (111)
-.|||++||..+-
T Consensus 45 g~qgca~iwegsg 57 (88)
T d1wkta_ 45 GKQGCATIWEGSG 57 (88)
T ss_dssp TSCEEEEEESSTT
T ss_pred CccccEEEEeCCC
Confidence 3589999998753
No 6
>d1xn7a_ a.4.5.62 (A:) Hypothetical protein YhgG {Escherichia coli [TaxId: 562]}
Probab=11.60 E-value=61 Score=20.25 Aligned_cols=29 Identities=28% Similarity=0.306 Sum_probs=19.3
Q ss_pred ccccceeeeeccccchhhcccCcCCCCCc
Q psy4920 28 SESIGCQIIKQDDVTQEGLSGLKSCPPDG 56 (111)
Q Consensus 28 ~~~~g~~~~~~~~~~~e~~~~iKSAP~dS 56 (111)
-..-|++|-...+.+==+...+||+|+..
T Consensus 40 L~aMGK~erie~d~~gCLsGsCKsCPEg~ 68 (78)
T d1xn7a_ 40 LESMGKAVRIQEEPDGCLSGSCKSCPEGK 68 (78)
T ss_dssp HHHHTSEEEECCCCCCCCCSSCCCCCCCC
T ss_pred HHHhhcceeccccccccccCCCCCCCCcc
Confidence 34568888555544445566799999853
No 7
>d1pgya_ a.5.2.1 (A:) Auxilin-like protein Swa2p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.80 E-value=21 Score=20.62 Aligned_cols=17 Identities=47% Similarity=0.688 Sum_probs=15.3
Q ss_pred hhhhHHHHhhhhhcccC
Q psy4920 5 MEISALHALHLTLDHAT 21 (111)
Q Consensus 5 ~~~~~~~~~~~~~~~~~ 21 (111)
|||..|-.|-|.+|.|+
T Consensus 9 MEiAkLMSLGL~id~At 25 (47)
T d1pgya_ 9 MEIARLMSLGLSIEEAT 25 (47)
T ss_dssp HHHHHHHHHCCCSHHHH
T ss_pred HHHHHHHHcccCHHHHH
Confidence 89999999999998875
No 8
>d2fbqa2 a.121.1.1 (A:81-214) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=9.64 E-value=62 Score=20.22 Aligned_cols=31 Identities=32% Similarity=0.590 Sum_probs=22.8
Q ss_pred cCcCCCCCchHHHHHHHHHhhhccccchHHH
Q psy4920 48 GLKSCPPDGLVWRLAICSSHALYSMGGAKSF 78 (111)
Q Consensus 48 ~iKSAP~dSL~~RLAl~~~~c~~~~GGlrav 78 (111)
.+=..|++-|.||+-..++.|.+.+.+-..+
T Consensus 68 alP~l~~~el~wr~~f~vga~~~~l~~~~~~ 98 (134)
T d2fbqa2 68 AAPKLPPIELFWRVHFMLGAAAFSMSGIKAL 98 (134)
T ss_dssp HSCCCCHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHcchHH
Confidence 3455788999999999998877666554443
No 9
>d1flia_ a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.59 E-value=1.4e+02 Score=18.81 Aligned_cols=25 Identities=24% Similarity=0.546 Sum_probs=19.7
Q ss_pred hHHHHHHHHH-----------HHHHHHHHHhcCccc
Q psy4920 75 AKSFAHVWFE-----------FVQELRYRWENSLRI 99 (111)
Q Consensus 75 lravAhLW~E-----------FV~ELRyrWEn~~~I 99 (111)
-..||.||-+ .-|=|||+.+.++.-
T Consensus 39 ~~~VA~lWG~~Knk~~M~YeklSRaLRyYY~~~il~ 74 (98)
T d1flia_ 39 PDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMT 74 (98)
T ss_dssp HHHHHHHHHHHTCCTTCSSHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHhcccee
Confidence 4678889965 778899999988753
No 10
>d2hkua1 a.4.1.9 (A:18-87) Putative transcriptional regulator RHA1_ro03468 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=9.51 E-value=81 Score=17.41 Aligned_cols=43 Identities=16% Similarity=0.128 Sum_probs=27.1
Q ss_pred CCCCchHHHHHHHHHhhhccccchHHH-HHHHHHHHHHHHHHHh
Q psy4920 52 CPPDGLVWRLAICSSHALYSMGGAKSF-AHVWFEFVQELRYRWE 94 (111)
Q Consensus 52 AP~dSL~~RLAl~~~~c~~~~GGlrav-AhLW~EFV~ELRyrWE 94 (111)
+..+.+..+.-+.-+..++++++...+ ..+..+.+.++..+.|
T Consensus 21 ~t~~~Ia~~agvs~~~~Y~~F~~K~~L~~~~~~~~~~~~~~~~~ 64 (70)
T d2hkua1 21 VPITQICAAAGAHPNQVTYYYGSKERLFVEVACAAVLRAGKRAE 64 (70)
T ss_dssp SCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHCCChhhHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666668899999999876 3344444444444443
Done!