RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4920
(111 letters)
>gnl|CDD|233338 TIGR01275, ACC_deam_rel, pyridoxal phosphate-dependent enzymes,
D-cysteine desulfhydrase family. This model represents
a family of pyridoxal phosphate-dependent enzymes
closely related to (and often designated as putative
examples of) 1-aminocyclopropane-1-carboxylate
deaminase. It appears that members of this family
include both D-cysteine desulfhydrase (EC 4.4.1.15) and
1-aminocyclopropane-1-carboxylate deaminase (EC
3.5.99.7).
Length = 318
Score = 27.5 bits (61), Expect = 1.6
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 21 TPLR--NEYSESIGCQI-IKQDDVTQEGLSGLK 50
TP++ S+ +G +I IK+DD+T + G K
Sbjct: 8 TPIQYLPRLSDYLGREIYIKRDDLTGLAMGGNK 40
>gnl|CDD|239230 cd02901, Macro_Poa1p_like, Macro domain, Poa1p_like family. The
macro domain is a high-affinity ADP-ribose binding
module found in a variety of proteins as a stand-alone
domain or in combination with other domains like in
histone macroH2A and some PARPs (poly ADP-ribose
polymerases). Some macro domains recognize poly
ADP-ribose as a ligand. Previously identified as
displaying an Appr-1"-p (ADP-ribose-1"-monophosphate)
processing activity, the macro domain may play roles in
distinct ADP-ribose pathways, such as the
ADP-ribosylation of proteins, an important
post-translational modification which occurs in DNA
repair, transcription, chromatin biology, and long-term
memory formation, among other processes. Members of
this family show similarity to the yeast protein Poa1p,
reported to be a phosphatase specific for Appr-1"-p, a
tRNA splicing metabolite. Poa1p may play a role in tRNA
splicing regulation.
Length = 140
Score = 26.1 bits (58), Expect = 3.9
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 61 LAICSSHALYSMGG--AKSFAHVWFEFVQELR 90
LA + MG A F + EFV+E R
Sbjct: 18 LAHAVN-CDGVMGKGIALQFKEKFPEFVEEYR 48
>gnl|CDD|235985 PRK07309, PRK07309, aromatic amino acid aminotransferase;
Validated.
Length = 391
Score = 25.8 bits (57), Expect = 5.0
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 4 VMEISALHALHLTLDHATPLRNEYSESIGCQIIKQDDVTQEGLS--GLKSCPPDGLVWRL 61
+ + +A+ AL D A P++ EY IK+ D E ++ G K PDG +
Sbjct: 273 MAQFAAVEALTNGKDDALPMKKEY--------IKRRDYIIEKMTDLGFKIIKPDGAFYIF 324
Query: 62 A-ICSSHALYSMGGAKSFAH 80
A I + + S + FA
Sbjct: 325 AKIPAGYNQDSFKFLQDFAR 344
>gnl|CDD|182045 PRK09718, PRK09718, hypothetical protein; Validated.
Length = 512
Score = 25.8 bits (56), Expect = 6.9
Identities = 17/51 (33%), Positives = 23/51 (45%)
Query: 13 LHLTLDHATPLRNEYSESIGCQIIKQDDVTQEGLSGLKSCPPDGLVWRLAI 63
L LT+D++ NE + IIK D + LKS LV +L I
Sbjct: 243 LELTIDYSDIFGNEDLDGYINNIIKMIDTLPDNAMILKSVLAVKLVMQLKI 293
>gnl|CDD|237185 PRK12739, PRK12739, elongation factor G; Reviewed.
Length = 691
Score = 25.6 bits (57), Expect = 7.2
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 73 GGAKSFAHVWFEF 85
GG + VW EF
Sbjct: 499 GGRGQYGDVWIEF 511
>gnl|CDD|178602 PLN03034, PLN03034, phosphoglycerate kinase; Provisional.
Length = 481
Score = 25.7 bits (56), Expect = 7.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 22 PLRNEYSESIGCQIIKQDDVTQEGLSGLKSCPPDGLV 58
PL SE +G Q++K DD + L + P+G V
Sbjct: 154 PLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGV 190
>gnl|CDD|179673 PRK03910, PRK03910, D-cysteine desulfhydrase; Validated.
Length = 331
Score = 25.6 bits (57), Expect = 7.2
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 7/35 (20%)
Query: 21 TPLRNEY----SESIGCQI-IKQDDVTQEGLSGLK 50
TPL E S ++G I IK+DD+T L G K
Sbjct: 16 TPL--EPLPRLSAALGPDIYIKRDDLTGLALGGNK 48
>gnl|CDD|180843 PRK07108, PRK07108, acetyl-CoA acetyltransferase; Provisional.
Length = 392
Score = 25.5 bits (56), Expect = 7.6
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 40 DVTQEGLSGLKSCPPDGLV 58
D T EG+S ++S P G++
Sbjct: 223 DTTLEGVSKIRSALPGGVI 241
>gnl|CDD|130917 TIGR01858, tag_bisphos_ald, class II aldolase, tagatose
bisphosphate family. This model describes
tagatose-1,6-bisphosphate aldolases, and perhaps other
closely related class II aldolases. This tetrameric,
Zn2+-dependent enzyme is related to the class II
fructose bisphosphate aldolase; fructose
1,6-bisphosphate and tagatose 1,6 bisphosphate differ
only in chirality at C4.
Length = 282
Score = 25.2 bits (55), Expect = 8.3
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 15/56 (26%)
Query: 1 MCMVMEISALHALHLTLDHATPLRNEYSESIGCQIIKQDDVTQEGLSGLKSCPPDG 56
+C + L L LDH L DD+ Q+ +G++S DG
Sbjct: 63 LCSAASTTYNMPLALHLDHHESL---------------DDIRQKVHAGVRSAMIDG 103
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.135 0.424
Gapped
Lambda K H
0.267 0.0704 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,496,027
Number of extensions: 440019
Number of successful extensions: 301
Number of sequences better than 10.0: 1
Number of HSP's gapped: 301
Number of HSP's successfully gapped: 15
Length of query: 111
Length of database: 10,937,602
Length adjustment: 75
Effective length of query: 36
Effective length of database: 7,611,052
Effective search space: 273997872
Effective search space used: 273997872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)