RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4920
         (111 letters)



>d1u3ma_ d.6.1.1 (A:) Prion protein domain {Chicken (Gallus gallus)
           [TaxId: 9031]}
          Length = 117

 Score = 23.7 bits (51), Expect = 4.1
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 70  YSMGGAKSFAHVWFEFVQELRYRWENSLRIP 100
           Y+MG   S  +  F+   E R+  ENS R P
Sbjct: 10  YAMGRVMSGMNYHFDRPDEYRWWSENSARYP 40


>d1xu0a_ d.6.1.1 (A:) Prion protein domain {African clawed frog
           (Xenopus laevis) [TaxId: 8355]}
          Length = 102

 Score = 23.7 bits (51), Expect = 4.2
 Identities = 8/31 (25%), Positives = 12/31 (38%)

Query: 70  YSMGGAKSFAHVWFEFVQELRYRWENSLRIP 100
           Y +G A       F    E RY  +   ++P
Sbjct: 4   YMLGNAVGRMSYQFNNPMESRYYNDYYNQMP 34


>d1dt9a3 d.91.1.1 (A:5-142) N-terminal domain of eukaryotic
          peptide chain release factor subunit 1, ERF1 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 138

 Score = 23.9 bits (52), Expect = 4.4
 Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 7/48 (14%)

Query: 18 DHATPLRNEYSES--IGCQIIKQD-----DVTQEGLSGLKSCPPDGLV 58
            A  L +E+  +  I  ++ +          Q+ L      PP+GLV
Sbjct: 43 RVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLV 90


>d1i4ma_ d.6.1.1 (A:) Prion protein domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 108

 Score = 23.2 bits (50), Expect = 5.7
 Identities = 12/31 (38%), Positives = 14/31 (45%)

Query: 70  YSMGGAKSFAHVWFEFVQELRYRWENSLRIP 100
           Y +G A S   + F    E RY  EN  R P
Sbjct: 10  YMLGSAMSRPIIHFGSDYEDRYYRENMHRYP 40


>d2dy1a3 d.14.1.1 (A:455-569) Elongation factor G (EF-G), domain
          IV {Thermus thermophilus, EF-G-2 [TaxId: 274]}
          Length = 115

 Score = 22.7 bits (48), Expect = 9.4
 Identities = 6/25 (24%), Positives = 9/25 (36%)

Query: 73 GGAKSFAHVWFEFVQELRYRWENSL 97
          GG   +  VW        Y +E  +
Sbjct: 21 GGHGQYGDVWLRLEPASEYGFEWRI 45


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.135    0.424 

Gapped
Lambda     K      H
   0.267   0.0546    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 409,794
Number of extensions: 16085
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 6
Length of query: 111
Length of database: 2,407,596
Length adjustment: 70
Effective length of query: 41
Effective length of database: 1,446,496
Effective search space: 59306336
Effective search space used: 59306336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.3 bits)