BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4924
(105 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRL 44
R VLL GPPGTGKT+L A+AQ+L ++
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKV 91
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRL 44
R VLL GPPGTGKT+L A+AQ+L ++
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKV 105
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 17/21 (80%), Positives = 18/21 (85%)
Query: 17 RVVLLHGPPGTGKTSLCKAVA 37
R VLL+GPPGTGKT L KAVA
Sbjct: 207 RGVLLYGPPGTGKTMLVKAVA 227
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 36.2 bits (82), Expect = 0.004, Method: Composition-based stats.
Identities = 16/22 (72%), Positives = 18/22 (81%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKL 40
VLL+GPPGTGKT L KAVA +
Sbjct: 218 VLLYGPPGTGKTLLAKAVAATI 239
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/19 (78%), Positives = 17/19 (89%)
Query: 19 VLLHGPPGTGKTSLCKAVA 37
+LL+GPPGTGKT L KAVA
Sbjct: 54 ILLYGPPGTGKTLLAKAVA 72
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAFLD 76
+LL GPPG GKT+L +A +L + L+ +K P L +N D+ F+D
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK-PGDLAAILANSLEEGDILFID 97
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAFLD 76
+LL GPPG GKT+L +A +L + L+ +K P L +N D+ F+D
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK-PGDLAAILANSLEEGDILFID 97
>pdb|4E22|A Chain A, Structure Of Cytidine Monophosphate Kinase From Yersinia
Pseudotuberculosis
Length = 252
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIF 51
V+ + GP G GK +LCKA+A+ L+ RL AI+
Sbjct: 29 VITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAFLD 76
+LL GPPG GKT+L +A +L + L+ +K P L +N D+ F+D
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK-PGDLAAILANSLEEGDILFID 97
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 35.0 bits (79), Expect = 0.010, Method: Composition-based stats.
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQK 39
R +LL+GPPGTGKT + +AVA +
Sbjct: 239 RGILLYGPPGTGKTLIARAVANE 261
Score = 32.3 bits (72), Expect = 0.069, Method: Composition-based stats.
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 19 VLLHGPPGTGKTSLCKAVAQK 39
VL +GPPG GKT L KA+A +
Sbjct: 514 VLFYGPPGCGKTLLAKAIANE 534
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 35.0 bits (79), Expect = 0.010, Method: Composition-based stats.
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQK 39
R +LL+GPPGTGKT + +AVA +
Sbjct: 239 RGILLYGPPGTGKTLIARAVANE 261
Score = 32.3 bits (72), Expect = 0.069, Method: Composition-based stats.
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 19 VLLHGPPGTGKTSLCKAVAQK 39
VL +GPPG GKT L KA+A +
Sbjct: 514 VLFYGPPGCGKTLLAKAIANE 534
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 35.0 bits (79), Expect = 0.010, Method: Composition-based stats.
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQK 39
R +LL+GPPGTGKT + +AVA +
Sbjct: 239 RGILLYGPPGTGKTLIARAVANE 261
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 35.0 bits (79), Expect = 0.010, Method: Composition-based stats.
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQK 39
R +LL+GPPGTGKT + +AVA +
Sbjct: 239 RGILLYGPPGTGKTLIARAVANE 261
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 35.0 bits (79), Expect = 0.010, Method: Composition-based stats.
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQK 39
R +LL+GPPGTGKT + +AVA +
Sbjct: 239 RGILLYGPPGTGKTLIARAVANE 261
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 35.0 bits (79), Expect = 0.010, Method: Composition-based stats.
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQK 39
R +LL+GPPGTGKT + +AVA +
Sbjct: 239 RGILLYGPPGTGKTLIARAVANE 261
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence
Of Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence
Of Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence
Of Atpgammas
Length = 340
Score = 34.7 bits (78), Expect = 0.013, Method: Composition-based stats.
Identities = 14/21 (66%), Positives = 18/21 (85%)
Query: 19 VLLHGPPGTGKTSLCKAVAQK 39
+LL+GPPGTGK+ L KAVA +
Sbjct: 72 ILLYGPPGTGKSYLAKAVATE 92
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 34.7 bits (78), Expect = 0.013, Method: Composition-based stats.
Identities = 14/21 (66%), Positives = 18/21 (85%)
Query: 19 VLLHGPPGTGKTSLCKAVAQK 39
+LL+GPPGTGK+ L KAVA +
Sbjct: 63 ILLYGPPGTGKSYLAKAVATE 83
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 34.7 bits (78), Expect = 0.013, Method: Composition-based stats.
Identities = 14/21 (66%), Positives = 18/21 (85%)
Query: 19 VLLHGPPGTGKTSLCKAVAQK 39
+LL+GPPGTGK+ L KAVA +
Sbjct: 87 ILLYGPPGTGKSYLAKAVATE 107
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 34.7 bits (78), Expect = 0.013, Method: Composition-based stats.
Identities = 14/21 (66%), Positives = 18/21 (85%)
Query: 19 VLLHGPPGTGKTSLCKAVAQK 39
+LL+GPPGTGK+ L KAVA +
Sbjct: 54 ILLYGPPGTGKSYLAKAVATE 74
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 34.7 bits (78), Expect = 0.014, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR-LQTPQAIFFKKY 55
I+ + V+L+GPPGTGKT L +AVA + ++ A +KY
Sbjct: 179 IAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKY 222
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 18/24 (75%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSI 42
VLL GPPGTGKT L KAVA + +
Sbjct: 47 VLLVGPPGTGKTLLAKAVAGEAHV 70
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 17 RVVLLHGPPGTGKTSLCKAVA 37
R +LL GPPGTGK+ L KAVA
Sbjct: 168 RGILLFGPPGTGKSYLAKAVA 188
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 33.9 bits (76), Expect = 0.021, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
Query: 20 LLHGPPGTGKTSLCKAVAQKLS---IRLQTPQAI 50
L++GPPGTGKT L +A A + + ++L PQ +
Sbjct: 219 LMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 18/23 (78%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQK 39
R +LL GPPGTGK+ L KAVA +
Sbjct: 46 RGILLFGPPGTGKSYLAKAVATE 68
>pdb|2FEM|A Chain A, Mutant R188m Of The Cytidine Monophosphate Kinase From
E. Coli
pdb|2FEO|A Chain A, Mutant R188m Of The Cytidine Monophosphate Kinase From
E. Coli Complexed With Dcmp
Length = 227
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIF 51
V+ + GP G GK +LCKA+A+ L L AI+
Sbjct: 7 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIY 40
>pdb|1CKE|A Chain A, Cmp Kinase From Escherichia Coli Free Enzyme Structure
Length = 227
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIF 51
V+ + GP G GK +LCKA+A+ L L AI+
Sbjct: 7 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIY 40
>pdb|2CMK|A Chain A, Cytidine Monophosphate Kinase In Complex With
Cytidine-Di- Phosphate
pdb|1KDO|A Chain A, Cytidine Monophosphate Kinase From E. Coli In Complex
With Cytidine Monophosphate
pdb|1KDO|B Chain B, Cytidine Monophosphate Kinase From E. Coli In Complex
With Cytidine Monophosphate
pdb|1KDP|A Chain A, Cytidine Monophosphate Kinase From E. Coli In Complex
With 2'-Deoxy-Cytidine Monophosphate
pdb|1KDP|B Chain B, Cytidine Monophosphate Kinase From E. Coli In Complex
With 2'-Deoxy-Cytidine Monophosphate
pdb|1KDR|A Chain A, Cytidine Monophosphate Kinase From E.Coli In Complex
With Ara-Cytidine Monophosphate
pdb|1KDR|B Chain B, Cytidine Monophosphate Kinase From E.Coli In Complex
With Ara-Cytidine Monophosphate
pdb|1KDT|A Chain A, Cytidine Monophosphate Kinase From E.Coli In Complex
With 2',3'-Dideoxy-Cytidine Monophosphate
pdb|1KDT|B Chain B, Cytidine Monophosphate Kinase From E.Coli In Complex
With 2',3'-Dideoxy-Cytidine Monophosphate
Length = 227
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIF 51
V+ + GP G GK +LCKA+A+ L L AI+
Sbjct: 7 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIY 40
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 33.9 bits (76), Expect = 0.026, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 16/76 (21%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAFLDRA 78
+L +GPPGTGKTS A+A++ I+ K Y N+++ ++ ID+ R
Sbjct: 49 LLFYGPPGTGKTSTIVALARE----------IYGKNYSNMVLELNASDDRGIDVV---RN 95
Query: 79 DIKQYIGFPSAAAIFN 94
IK F S IF+
Sbjct: 96 QIKD---FASTRQIFS 108
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 33.5 bits (75), Expect = 0.029, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKL 40
++ L GPPG GKTSL K++A+ L
Sbjct: 110 ILCLAGPPGVGKTSLAKSIAKSL 132
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 33.5 bits (75), Expect = 0.029, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAFLD 76
VLL GPPG GKT+L +A +L + K ++ TS G D+ F+D
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERG--DVLFID 109
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 33.5 bits (75), Expect = 0.030, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAFLD 76
VLL GPPG GKT+L +A +L + K ++ TS G D+ F+D
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERG--DVLFID 109
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 33.5 bits (75), Expect = 0.030, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAFLD 76
VLL GPPG GKT+L +A +L + K ++ TS G D+ F+D
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERG--DVLFID 109
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 33.5 bits (75), Expect = 0.030, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAFLD 76
VLL GPPG GKT+L +A +L + K ++ TS G D+ F+D
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERG--DVLFID 109
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 33.5 bits (75), Expect = 0.030, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAFLD 76
VLL GPPG GKT+L +A +L + K ++ TS G D+ F+D
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERG--DVLFID 109
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 33.5 bits (75), Expect = 0.031, Method: Composition-based stats.
Identities = 15/23 (65%), Positives = 18/23 (78%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLS 41
V+L+G PGTGKT L KAVA + S
Sbjct: 219 VILYGAPGTGKTLLAKAVANQTS 241
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 33.5 bits (75), Expect = 0.031, Method: Composition-based stats.
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 19 VLLHGPPGTGKTSLCKAVAQK 39
+LL+GPPGTGKT +AVA +
Sbjct: 246 ILLYGPPGTGKTLCARAVANR 266
>pdb|3R20|A Chain A, Crystal Structure Of Cytidylate Kinase From
Mycobacterium Smegmatis
Length = 233
Score = 33.1 bits (74), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 10 SNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIF 51
+++S + VV + GP GTGK+S+ + +A+ L R A++
Sbjct: 3 GSMVSGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMY 44
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSI 42
VL+ GPPGTGKT L KA+A + +
Sbjct: 48 VLMVGPPGTGKTLLAKAIAGEAKV 71
>pdb|4B3G|A Chain A, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
pdb|4B3G|B Chain B, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
Length = 646
Score = 33.1 bits (74), Expect = 0.043, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 13 ISWNRVVLLHGPPGTGKTS-----LCKAVAQKLSIRLQTPQAI 50
+S + ++HGPPGTGKT+ + +AV Q L + P I
Sbjct: 202 LSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNI 244
>pdb|4B3F|X Chain X, Crystal Structure Of 1ghmbp2 Helicase
Length = 646
Score = 33.1 bits (74), Expect = 0.043, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 13 ISWNRVVLLHGPPGTGKTS-----LCKAVAQKLSIRLQTPQAI 50
+S + ++HGPPGTGKT+ + +AV Q L + P I
Sbjct: 202 LSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNI 244
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 33.1 bits (74), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLS 41
R +L+GPPG GKT+ VAQ+L
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQELG 102
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 33.1 bits (74), Expect = 0.043, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSI 42
+LL GPPGTGKT L +AVA + ++
Sbjct: 52 ILLVGPPGTGKTLLARAVAGEANV 75
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 32.7 bits (73), Expect = 0.058, Method: Composition-based stats.
Identities = 15/21 (71%), Positives = 16/21 (76%)
Query: 17 RVVLLHGPPGTGKTSLCKAVA 37
R +LL GPPG GKT L KAVA
Sbjct: 149 RGLLLFGPPGNGKTMLAKAVA 169
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 32.7 bits (73), Expect = 0.059, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAFLD 76
VLL GPPG G+T+L +A +L + K ++ TS G D+ F+D
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERG--DVLFID 109
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 32.7 bits (73), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 15/21 (71%), Positives = 16/21 (76%)
Query: 19 VLLHGPPGTGKTSLCKAVAQK 39
VLL GPPG GKT L KAVA +
Sbjct: 47 VLLAGPPGCGKTLLAKAVANE 67
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp
From Thermus Thermophilus
Length = 254
Score = 32.0 bits (71), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSI 42
VLL GPPG GKT L +AVA + +
Sbjct: 52 VLLVGPPGVGKTHLARAVAGEARV 75
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 32.0 bits (71), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSI 42
VLL GPPG GKT L +AVA + +
Sbjct: 76 VLLVGPPGVGKTHLARAVAGEARV 99
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 32.0 bits (71), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 19 VLLHGPPGTGKTSLCKAVAQK 39
VL +GPPG GKT L KA+A +
Sbjct: 52 VLFYGPPGCGKTLLAKAIANE 72
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 32.0 bits (71), Expect = 0.090, Method: Composition-based stats.
Identities = 14/19 (73%), Positives = 15/19 (78%)
Query: 19 VLLHGPPGTGKTSLCKAVA 37
VLL GPPG GKT L +AVA
Sbjct: 76 VLLVGPPGVGKTHLARAVA 94
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 32.0 bits (71), Expect = 0.090, Method: Composition-based stats.
Identities = 14/19 (73%), Positives = 15/19 (78%)
Query: 19 VLLHGPPGTGKTSLCKAVA 37
VLL GPPG GKT L +AVA
Sbjct: 67 VLLVGPPGVGKTHLARAVA 85
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLS 41
+LL GPPG GKT L +AVA + S
Sbjct: 57 LLLFGPPGNGKTLLARAVATECS 79
>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2AR7|B Chain B, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2BBW|A Chain A, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
pdb|2BBW|B Chain B, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
Length = 246
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIR 43
R V+L GPPG+GK ++C+ +AQ ++
Sbjct: 29 RAVIL-GPPGSGKGTVCQRIAQNFGLQ 54
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 31.2 bits (69), Expect = 0.15, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKL 40
R VL+ G PGTGKT++ +AQ L
Sbjct: 71 RAVLIAGQPGTGKTAIAMGMAQAL 94
>pdb|2GZA|A Chain A, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|B Chain B, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|C Chain C, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
Length = 361
Score = 31.2 bits (69), Expect = 0.16, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLS-----IRLQTPQAIFFKKYPN 57
+ RV+++ G G+GKT+L KA+ Q++ I ++ +F +PN
Sbjct: 172 VQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPN 221
>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p)
pdb|3NDP|B Chain B, Crystal Structure Of Human Ak4(L171p)
Length = 231
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIR 43
R V+L GPPG+GK ++C+ +AQ ++
Sbjct: 7 RAVIL-GPPGSGKGTVCQRIAQNFGLQ 32
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 30.8 bits (68), Expect = 0.20, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSI 42
+LL GPPGTG T L +AVA + ++
Sbjct: 52 ILLVGPPGTGATLLARAVAGEANV 75
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 30.8 bits (68), Expect = 0.20, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKL 40
R VL+ G PGTGKT++ AQ L
Sbjct: 86 RAVLIAGQPGTGKTAIAXGXAQAL 109
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 30.8 bits (68), Expect = 0.21, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 19 VLLHGPPGTGKTSLCKAVAQK 39
+LL GPPGTGKT + K +A +
Sbjct: 120 ILLFGPPGTGKTLIGKCIASQ 140
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 20 LLHGPPGTGKTSLCKAVAQKLSI 42
LL GPPG GKT L KAVA + +
Sbjct: 43 LLLGPPGCGKTLLAKAVATEAQV 65
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 30.4 bits (67), Expect = 0.25, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 19 VLLHGPPGTGKTSLCKAVAQ 38
++L GPPGTGKT+L + +A+
Sbjct: 53 MILWGPPGTGKTTLAEVIAR 72
>pdb|3E1S|A Chain A, Structure Of An N-Terminal Truncation Of Deinococcus
Radiodurans Recd2
pdb|3GP8|A Chain A, Crystal Structure Of The Binary Complex Of Recd2 With Dna
pdb|3GPL|A Chain A, Crystal Structure Of The Ternary Complex Of Recd2 With Dna
And Adpnp
pdb|3GPL|B Chain B, Crystal Structure Of The Ternary Complex Of Recd2 With Dna
And Adpnp
Length = 574
Score = 30.4 bits (67), Expect = 0.25, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 20/25 (80%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAVA 37
++ +R+V+L G PGTGK++ KAVA
Sbjct: 201 LAGHRLVVLTGGPGTGKSTTTKAVA 225
>pdb|2GA8|A Chain A, Crystal Structure Of Yfh7 From Saccharomyces Cerevisiae:
A Putative P-Loop Containing Kinase With A Circular
Permutation.
pdb|2GAA|A Chain A, Crystal Structure Of Yfh7 From Saccharomyces Cerevisiae:
A Putative P-Loop Containing Kinase With A Circular
Permutation
Length = 359
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVL 59
V+L G PG+GK+++ + + Q ++ + T F ++PNV+
Sbjct: 27 VILVGSPGSGKSTIAEELXQIINEKYHT----FLSEHPNVI 63
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Query: 5 HSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYP------NV 58
H K+ ++++ R ++L GPPG+GKT + + S L I F K +
Sbjct: 1037 HEKIFYDLLNSKRGIILCGPPGSGKTMIMNNALRNSS--LYDVVGINFSKDTTTEHILSA 1094
Query: 59 LIFTTSNLTGAIDLAFLDRADIKQYIGF 86
L T+ +T + L L ++DIK + F
Sbjct: 1095 LHRHTNYVTTSKGLTLLPKSDIKNLVLF 1122
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 11/18 (61%)
Query: 23 GPPGTGKTSLCKAVAQKL 40
GP GTGKT KA Q L
Sbjct: 433 GPAGTGKTETVKAFGQNL 450
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Query: 5 HSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYP------NV 58
H K+ ++++ R ++L GPPG+GKT + + S L I F K +
Sbjct: 1256 HEKIFYDLLNSKRGIILCGPPGSGKTMIMNNALRNSS--LYDVVGINFSKDTTTEHILSA 1313
Query: 59 LIFTTSNLTGAIDLAFLDRADIKQYIGF 86
L T+ +T + L L ++DIK + F
Sbjct: 1314 LHRHTNYVTTSKGLTLLPKSDIKNLVLF 1341
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 11/18 (61%)
Query: 23 GPPGTGKTSLCKAVAQKL 40
GP GTGKT KA Q L
Sbjct: 652 GPAGTGKTETVKAFGQNL 669
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKL 40
+L +GPPGTGKTS A+ ++L
Sbjct: 61 MLFYGPPGTGKTSTILALTKEL 82
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLS 41
+L+ G PGTGKTS+ + +A +L
Sbjct: 13 ILITGTPGTGKTSMAEMIAAELD 35
>pdb|3R8C|A Chain A, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|3R8C|B Chain B, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|4DIE|A Chain A, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|B Chain B, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|C Chain C, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|D Chain D, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
Length = 228
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKL 40
VV + GP GTGK+S+ K +A++L
Sbjct: 6 VVAVDGPSGTGKSSVAKELARQL 28
>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis
Adenylate Kinase
Length = 181
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSI 42
VLL GPPG GK + +A+KL I
Sbjct: 3 VLLLGPPGAGKGTQAVKLAEKLGI 26
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Adenylate Kinase Complexed With Two Molecules Of Adp
And Mg
Length = 201
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSI 42
VLL GPPG GK + +A+KL I
Sbjct: 23 VLLLGPPGAGKGTQAVKLAEKLGI 46
>pdb|1YE8|A Chain A, Crystal Structure Of Thep1 From The Hyperthermophile
Aquifex Aeolicus
Length = 178
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIR 43
+++ G PG GKT+L K + ++L R
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKR 27
>pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
Length = 338
Score = 29.3 bits (64), Expect = 0.55, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAFLD 76
+L GP G GKT+L ++ + S ++T A +K ++ T+ G D+ F+D
Sbjct: 58 ILFSGPAGLGKTTLANIISYEXSANIKTTAAPXIEKSGDLAAILTNLSEG--DILFID 113
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 29.3 bits (64), Expect = 0.56, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKL 40
+L GPPGTGKT+ A+A+ L
Sbjct: 41 LLFSGPPGTGKTATAIALARDL 62
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKL 40
+L GPPGTGKT+ A+A+ L
Sbjct: 41 LLFSGPPGTGKTATAIALARDL 62
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 19 VLLHGPPGTGKTSLCKAVAQK 39
VLL GPP +GKT+L +A++
Sbjct: 66 VLLEGPPHSGKTALAAKIAEE 86
>pdb|3CXM|A Chain A, Leishmania Naiffi Uracil-Dna Glycosylase In Complex With
5-Bromouracil
Length = 268
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 74 FLDRADIKQYIGFPSAAAIFNIFSSC 99
FLD K + P AA IFN F+SC
Sbjct: 63 FLDEEKEKGRVILPPAADIFNAFNSC 88
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 19 VLLHGPPGTGKTSLCKAVAQK 39
VLL GPP +GKT+L +A++
Sbjct: 67 VLLEGPPHSGKTALAAKIAEE 87
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIR 43
+LL G PG GKT+L K +A K ++
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLK 31
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKL 40
I VV HGP G GKT+L K ++ L
Sbjct: 32 IEKGNVVNFHGPNGIGKTTLLKTISTYL 59
>pdb|1EX4|A Chain A, Hiv-1 Integrase Catalytic Core And C-Terminal Domain
pdb|1EX4|B Chain B, Hiv-1 Integrase Catalytic Core And C-Terminal Domain
Length = 239
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 54 KYPNVLIFTT--SNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEELKR 105
++P I T SN TGA A D A IKQ G P + S +ELK+
Sbjct: 58 RWPVKTIHTDNGSNFTGATVRAACDWAGIKQEDGIPYNPQSQGVVESMNKELKK 111
>pdb|1GKY|A Chain A, Refined Structure Of The Complex Between Guanylate
Kinase And Its Substrate Gmp At 2.0 Angstroms
Resolution
Length = 187
Score = 28.5 bits (62), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 15/52 (28%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLT 67
+R +++ GP GTGK++L K + F +YP+ F+ S+ T
Sbjct: 2 SRPIVISGPSGTGKSTLLKKL---------------FAEYPDSFGFSVSSTT 38
>pdb|1EX6|A Chain A, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX6|B Chain B, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX7|A Chain A, Crystal Structure Of Yeast Guanylate Kinase In Complex
With Guanosine-5'-Monophosphate
Length = 186
Score = 28.5 bits (62), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 15/52 (28%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLT 67
+R +++ GP GTGK++L K + F +YP+ F+ S+ T
Sbjct: 1 SRPIVISGPSGTGKSTLLKKL---------------FAEYPDSFGFSVSSTT 37
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0
Angstroms Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIR 43
+LL G PG GKT+L K +A K ++
Sbjct: 14 ILLTGTPGVGKTTLGKELASKSGLK 38
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 28.5 bits (62), Expect = 0.98, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKL 40
R VLL G PGTGK+ L +A+A+ L
Sbjct: 61 RHVLLIGEPGTGKSMLGQAMAELL 84
>pdb|1EXQ|A Chain A, Crystal Structure Of The Hiv-1 Integrase Catalytic Core
Domain
pdb|1EXQ|B Chain B, Crystal Structure Of The Hiv-1 Integrase Catalytic Core
Domain
Length = 154
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 54 KYPNVLIFTT--SNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEELKR 105
++P I T SN TGA A D A IKQ G P + S +ELK+
Sbjct: 52 RWPVKTIHTDNGSNFTGATVRAACDWAGIKQEDGIPYNPQSQGVVESMNKELKK 105
>pdb|3AO3|A Chain A, Fragment-Based Approach To The Design Of Ligands Targeting
A Novel Site On Hiv-1 Integrase
pdb|3AO3|B Chain B, Fragment-Based Approach To The Design Of Ligands Targeting
A Novel Site On Hiv-1 Integrase
pdb|3AO4|A Chain A, Fragment-Based Approach To The Design Of Ligands Targeting
A Novel Site On Hiv-1 Integrase
pdb|3AO4|B Chain B, Fragment-Based Approach To The Design Of Ligands Targeting
A Novel Site On Hiv-1 Integrase
pdb|3AO5|A Chain A, Fragment-Based Approach To The Design Of Ligands Targeting
A Novel Site On Hiv-1 Integrase
pdb|3AO5|B Chain B, Fragment-Based Approach To The Design Of Ligands Targeting
A Novel Site On Hiv-1 Integrase
pdb|3AO2|A Chain A, Fragment-Based Approach To The Design Of Ligands Targeting
A Novel Site On Hiv-1 Integrase
pdb|3AO2|B Chain B, Fragment-Based Approach To The Design Of Ligands Targeting
A Novel Site On Hiv-1 Integrase
Length = 163
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 54 KYPNVLIFTT--SNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEELKR 105
++P + T SN TGA A D A IKQ G P + S +ELK+
Sbjct: 58 RWPVKTVHTDNGSNFTGATVRAACDWAGIKQEDGIPYNPQSQGVIESMNKELKK 111
>pdb|3VQ5|A Chain A, Hiv-1 In Core Domain In Complex With
N-methyl-1-(4-methyl-2-phenyl-1,
3-thiazol-5-yl)methanamine
pdb|3VQ5|B Chain B, Hiv-1 In Core Domain In Complex With
N-methyl-1-(4-methyl-2-phenyl-1,
3-thiazol-5-yl)methanamine
pdb|3VQ8|A Chain A, Hiv-1 In Core Domain In Complex With
(3r)-3,4-dihydro-2h-chromen-3- Ylmethanol
pdb|3VQ8|B Chain B, Hiv-1 In Core Domain In Complex With
(3r)-3,4-dihydro-2h-chromen-3- Ylmethanol
pdb|3VQE|A Chain A, Hiv-1 In Core Domain In Complex With
[1-(4-fluorophenyl)-5-methyl-1h- Pyrazol-4-yl]methanol
pdb|3VQE|B Chain B, Hiv-1 In Core Domain In Complex With
[1-(4-fluorophenyl)-5-methyl-1h- Pyrazol-4-yl]methanol
Length = 157
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 54 KYPNVLIFTT--SNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEELKR 105
++P + T SN TGA A D A IKQ G P + S +ELK+
Sbjct: 52 RWPVKTVHTDNGSNFTGATVRAACDWAGIKQEDGIPYNPQSQGVIESMNKELKK 105
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKL 40
+L GPPG GKT+ A+A++L
Sbjct: 49 LLFAGPPGVGKTTAALALAREL 70
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To
Closed Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To
Closed Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To
Closed Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To
Closed Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 19 VLLHGP-PGTGKTSLCKAVAQKLS 41
++LH P PGTGKT++ KA+ ++
Sbjct: 50 IILHSPSPGTGKTTVAKALCHDVN 73
>pdb|3VAA|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
pdb|3VAA|B Chain B, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
pdb|3VAA|C Chain C, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
Length = 199
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSI 42
+ L G G GKT+L KA A+KL++
Sbjct: 28 IFLTGYMGAGKTTLGKAFARKLNV 51
>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
Length = 202
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 15/54 (27%)
Query: 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLT 67
S +R +++ GP GTGK++L K + F +YP+ F+ + T
Sbjct: 15 SMSRPIVISGPSGTGKSTLLKKL---------------FAEYPDSFGFSVPSTT 53
>pdb|2H92|A Chain A, Crystal Structure Of Staphylococcus Aureus Cytidine
Monophosphate Kinase In Complex With Cytidine-5'-
Monophosphate
pdb|2H92|B Chain B, Crystal Structure Of Staphylococcus Aureus Cytidine
Monophosphate Kinase In Complex With Cytidine-5'-
Monophosphate
pdb|2H92|C Chain C, Crystal Structure Of Staphylococcus Aureus Cytidine
Monophosphate Kinase In Complex With Cytidine-5'-
Monophosphate
Length = 219
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSI 42
+ L GP GK+++ K VA +LS+
Sbjct: 6 IALDGPAAAGKSTIAKRVASELSM 29
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSI 42
+LL GP G+GKT + + +A+ L I
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLDI 98
>pdb|2BDT|A Chain A, Crystal Structure Of The Putative Gluconate Kinase From
Bacillus Halodurans, Northeast Structural Genomics
Target Bhr61
Length = 189
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLS 41
++ ++ GP G GK++ CK +A +L
Sbjct: 3 KLYIITGPAGVGKSTTCKRLAAQLD 27
>pdb|2W58|A Chain A, Crystal Structure Of The Dnai
pdb|2W58|B Chain B, Crystal Structure Of The Dnai
Length = 202
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIR 43
+ LHG G GKT L A+A +L+ R
Sbjct: 57 LYLHGSFGVGKTYLLAAIANELAKR 81
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 20 LLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKK 54
+L G PG GKT++ + +AQ++ I + P+ + ++
Sbjct: 47 VLIGEPGVGKTAIVEGLAQRI-INGEVPEGLKGRR 80
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 5 HSKVKSNIISWNRVVLLHGPPGTGKT 30
H V +S +R ++L GPPG+GKT
Sbjct: 1293 HVDVLHAWLSEHRPLILCGPPGSGKT 1318
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
Length = 3245
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 5 HSKVKSNIISWNRVVLLHGPPGTGKT 30
H V +S +R ++L GPPG+GKT
Sbjct: 1293 HVDVLHAWLSEHRPLILCGPPGSGKT 1318
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQK 39
RVVLL G PG GKTSL A K
Sbjct: 6 RVVLL-GDPGVGKTSLASLFAGK 27
>pdb|2PT7|A Chain A, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|B Chain B, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|C Chain C, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|D Chain D, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|E Chain E, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|F Chain F, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
Length = 330
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAV-----AQKLSIRLQTPQAIFFKKYPN-VLIFTTSNL 66
I+ + V++ G G+GKT+ K++ ++ I ++ + I FK + N +F N+
Sbjct: 168 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNI 227
Query: 67 TGA 69
T A
Sbjct: 228 TSA 230
>pdb|3O4O|C Chain C, Crystal Structure Of An Interleukin-1 Receptor Complex
Length = 339
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 27 TGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAFL--DRADIK 81
T S C ++ +L + T + F YP +L +TS + DL+ D+ D+K
Sbjct: 100 TRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVK 156
>pdb|1SXJ|E Chain E, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 354
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKL 40
+LL+GP GTGK + C A+ + +
Sbjct: 39 LLLYGPNGTGKKTRCMALLESI 60
>pdb|2XZL|A Chain A, Upf1-Rna Complex
Length = 802
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 20 LLHGPPGTGKTSLCKAVAQKLS 41
L+ GPPGTGKT + LS
Sbjct: 379 LIQGPPGTGKTVTSATIVYHLS 400
>pdb|1LVG|A Chain A, Crystal Structure Of Mouse Guanylate Kinase In Complex
With Gmp And Adp
Length = 198
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41
++ R V+L GP G GK++L K + Q+ S
Sbjct: 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHS 29
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSI 42
+LL GP G+GKT L + +A+ L +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDV 77
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSI 42
+LL GP G+GKT L + +A+ L +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDV 77
>pdb|2I3B|A Chain A, Solution Structure Of A Human Cancer-Related Nucleoside
Triphosphatase
Length = 189
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKL 40
R V L GPPG GKT+L ++ L
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVL 25
>pdb|2XZO|A Chain A, Upf1 Helicase - Rna Complex
pdb|2XZP|A Chain A, Upf1 Helicase
Length = 623
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 3 FSHSKVKSNIISWNR-VVLLHGPPGTGKT 30
+HS+V + R + L+ GPPGTGKT
Sbjct: 180 LNHSQVYAVKTVLQRPLSLIQGPPGTGKT 208
>pdb|2GJK|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK6|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK6|B Chain B, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK7|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
Length = 624
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 3 FSHSKVKSNIISWNR-VVLLHGPPGTGKT 30
+HS+V + R + L+ GPPGTGKT
Sbjct: 181 LNHSQVYAVKTVLQRPLSLIQGPPGTGKT 209
>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase
At 2.1 Angstroms Resolution
Length = 195
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAVAQK 39
+ ++++ + G PG+GK + C+ + QK
Sbjct: 6 LKKSKIIFVVGGPGSGKGTQCEKIVQK 32
>pdb|2V1U|A Chain A, Structure Of The Aeropyrum Pernix Orc1 Protein In
Complex With Dna
Length = 387
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 20 LLHGPPGTGKTSLCKAVAQKLSIR 43
LL+G GTGKT++ + V ++L R
Sbjct: 48 LLYGLTGTGKTAVARLVLRRLEAR 71
>pdb|1GVN|B Chain B, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|1GVN|D Chain D, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|3Q8X|B Chain B, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
pdb|3Q8X|D Chain D, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
Length = 287
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 20 LLHGPPGTGKTSLCKAV 36
LL G PG+GKTSL A+
Sbjct: 37 LLGGQPGSGKTSLRSAI 53
>pdb|2WJV|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2
pdb|2WJV|B Chain B, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2
pdb|2WJY|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2 Orthorhombic Form
Length = 800
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 3 FSHSKVKSNIISWNR-VVLLHGPPGTGKT 30
+HS+V + R + L+ GPPGTGKT
Sbjct: 357 LNHSQVYAVKTVLQRPLSLIQGPPGTGKT 385
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With
Guanidinium Chloride And Adp
Length = 397
Score = 25.8 bits (55), Expect = 5.8, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 20 LLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKK 54
+L G PG GKT++ + +AQ++ ++ P+ + K+
Sbjct: 58 VLIGEPGVGKTAIVEGLAQRI-VKGDVPEGLKGKR 91
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 25.8 bits (55), Expect = 5.8, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 20 LLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKK 54
+L G PG GKT++ + +AQ++ ++ P+ + K+
Sbjct: 195 VLIGEPGVGKTAIVEGLAQRI-VKGDVPEGLKGKR 228
>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus
Thermophilus Hb8
Length = 186
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41
+ + V+ GPPG GK + +AQ+L
Sbjct: 1 MDVGQAVIFLGPPGAGKGTQASRLAQELG 29
>pdb|2RHM|A Chain A, Crystal Structure Of A Putative Kinase (Caur_3907) From
Chloroflexus Aurantiacus J-10-Fl At 1.70 A Resolution
pdb|2RHM|B Chain B, Crystal Structure Of A Putative Kinase (Caur_3907) From
Chloroflexus Aurantiacus J-10-Fl At 1.70 A Resolution
pdb|2RHM|C Chain C, Crystal Structure Of A Putative Kinase (Caur_3907) From
Chloroflexus Aurantiacus J-10-Fl At 1.70 A Resolution
pdb|2RHM|D Chain D, Crystal Structure Of A Putative Kinase (Caur_3907) From
Chloroflexus Aurantiacus J-10-Fl At 1.70 A Resolution
Length = 193
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49
++++ G P TGKT+L +A+A L + L + A
Sbjct: 7 LIIVTGHPATGKTTLSQALATGLRLPLLSKDA 38
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 25.8 bits (55), Expect = 7.0, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 20 LLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKK 54
+L G PG GKT++ + +AQ++ I + P+ + K+
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQI-INNEVPEILRDKR 238
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 25.8 bits (55), Expect = 7.0, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 20 LLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKK 54
+L G PG GKT++ + +AQ++ I + P+ + K+
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQI-INNEVPEILRDKR 238
>pdb|1ZP6|A Chain A, Crystal Structure Of Atu3015, A Putative Cytidylate
Kinase From Agrobacterium Tumefaciens, Northeast
Structural Genomics Target Atr62
Length = 191
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 17/20 (85%)
Query: 18 VVLLHGPPGTGKTSLCKAVA 37
++LL G PG+GK+++ +A+A
Sbjct: 11 ILLLSGHPGSGKSTIAEALA 30
>pdb|1G6O|A Chain A, Crystal Structure Of The Helicobacter Pylori Atpase,
Hp0525, In Complex With Adp
pdb|1G6O|B Chain B, Crystal Structure Of The Helicobacter Pylori Atpase,
Hp0525, In Complex With Adp
pdb|1NLY|A Chain A, Crystal Structure Of The Traffic Atpase Of The
Helicobacter Pylori Type Iv Secretion System In Complex
With Atpgammas
pdb|1NLY|B Chain B, Crystal Structure Of The Traffic Atpase Of The
Helicobacter Pylori Type Iv Secretion System In Complex
With Atpgammas
pdb|1NLZ|A Chain A, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|B Chain B, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|C Chain C, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|D Chain D, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|E Chain E, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|F Chain F, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1OPX|A Chain A, Crystal Structure Of The Traffic Atpase (Hp0525) Of The
Helicobacter Pylori Type Iv Secretion System Bound By
Sulfate
pdb|1OPX|B Chain B, Crystal Structure Of The Traffic Atpase (Hp0525) Of The
Helicobacter Pylori Type Iv Secretion System Bound By
Sulfate
Length = 330
Score = 25.4 bits (54), Expect = 7.8, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLS-----IRLQTPQAIFFKKYPN-VLIFTTSNL 66
I+ + V++ G G+GKT+ K++ + + I ++ + I FK + N +F N+
Sbjct: 168 IAIGKNVIVCGGTGSGKTTYIKSIXEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNI 227
Query: 67 TGA 69
T A
Sbjct: 228 TSA 230
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 13/74 (17%)
Query: 19 VLLHGPPGTGKTSLCKAVAQ-------KLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAID 71
+L+ GP G GKT + + +A+ K+ T K+ +++ T + GAID
Sbjct: 53 ILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAID 112
Query: 72 ------LAFLDRAD 79
+ F+D D
Sbjct: 113 AVEQNGIVFIDEID 126
>pdb|3TR0|A Chain A, Structure Of Guanylate Kinase (Gmk) From Coxiella
Burnetii
Length = 205
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 10 SNIISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41
SN + + ++ P G GKTSL +A+ + L+
Sbjct: 1 SNAXNKANLFIISAPSGAGKTSLVRALVKALA 32
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,011,633
Number of Sequences: 62578
Number of extensions: 98045
Number of successful extensions: 761
Number of sequences better than 100.0: 131
Number of HSP's better than 100.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 634
Number of HSP's gapped (non-prelim): 145
length of query: 105
length of database: 14,973,337
effective HSP length: 70
effective length of query: 35
effective length of database: 10,592,877
effective search space: 370750695
effective search space used: 370750695
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)