BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4924
(105 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|E1C6Q1|PCH2_CHICK Pachytene checkpoint protein 2 homolog OS=Gallus gallus GN=TRIP13
PE=3 SV=1
Length = 432
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/54 (70%), Positives = 46/54 (85%)
Query: 52 FKKYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEELKR 105
K+YPNV+I TTSN+T ID+AF+DRADIKQYIG PSAAAIF I+ SC+EEL +
Sbjct: 287 IKRYPNVVILTTSNITEKIDMAFVDRADIKQYIGPPSAAAIFRIYLSCLEELMK 340
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 35/42 (83%), Positives = 38/42 (90%)
Query: 3 FSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44
FS V SN+ISWNRVVLLHGPPGTGKTSLCKA+AQKL+IRL
Sbjct: 159 FSDRNVDSNLISWNRVVLLHGPPGTGKTSLCKALAQKLTIRL 200
>sp|Q6P4W8|PCH2_XENTR Pachytene checkpoint protein 2 homolog OS=Xenopus tropicalis
GN=trip13 PE=2 SV=1
Length = 432
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 45/58 (77%)
Query: 48 QAIFFKKYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEELKR 105
Q K+YPNV+I +TSNLT ID+AF DRADIKQYIG PS AAIF I+ SC+EEL +
Sbjct: 283 QIDHIKRYPNVVILSTSNLTEKIDVAFTDRADIKQYIGPPSPAAIFKIYLSCIEELMK 340
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 39/44 (88%)
Query: 1 MKFSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44
M FS V SN+ISWNRVVLLHGPPGTGKTSLCKA+AQKL+IRL
Sbjct: 157 MLFSDKNVDSNLISWNRVVLLHGPPGTGKTSLCKALAQKLTIRL 200
>sp|Q6PH52|PCH2_DANRE Pachytene checkpoint protein 2 homolog OS=Danio rerio GN=trip13
PE=2 SV=1
Length = 424
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/54 (68%), Positives = 45/54 (83%)
Query: 52 FKKYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEELKR 105
K++PNV+I TTSN+T IDLAF+DRADIKQYIG PSA AIFNI+ S +EEL +
Sbjct: 279 IKRHPNVVILTTSNVTEKIDLAFVDRADIKQYIGPPSAKAIFNIYLSSLEELMK 332
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/42 (80%), Positives = 37/42 (88%)
Query: 3 FSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44
FS V SN+I+WNRVVLLHGPPGTGKTSLCK +AQKLSIRL
Sbjct: 151 FSDKNVDSNLIAWNRVVLLHGPPGTGKTSLCKGLAQKLSIRL 192
>sp|Q5XHZ9|PCH2_RAT Pachytene checkpoint protein 2 homolog OS=Rattus norvegicus
GN=Trip13 PE=2 SV=1
Length = 432
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 36/54 (66%), Positives = 45/54 (83%)
Query: 52 FKKYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEELKR 105
K++ NV+I TTSN+T ID+AF+DRADIKQYIG PSAAAIF I+ SC+EEL +
Sbjct: 287 IKRHSNVVILTTSNITEKIDVAFVDRADIKQYIGPPSAAAIFKIYLSCLEELMK 340
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 39/44 (88%)
Query: 3 FSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQT 46
FS V SN+I+WNRVVLLHGPPGTGKTSLCKA+AQKL+IRL +
Sbjct: 159 FSDKNVDSNLITWNRVVLLHGPPGTGKTSLCKALAQKLTIRLSS 202
>sp|Q3UA06|PCH2_MOUSE Pachytene checkpoint protein 2 homolog OS=Mus musculus GN=Trip13
PE=2 SV=1
Length = 432
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 36/54 (66%), Positives = 45/54 (83%)
Query: 52 FKKYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEELKR 105
K++ NV+I TTSN+T ID+AF+DRADIKQYIG PSAAAIF I+ SC+EEL +
Sbjct: 287 IKRHSNVVILTTSNITEKIDVAFVDRADIKQYIGPPSAAAIFKIYLSCLEELMK 340
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 39/44 (88%)
Query: 3 FSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQT 46
FS V SN+I+WNRVVLLHGPPGTGKTSLCKA+AQKL+IRL +
Sbjct: 159 FSDKNVDSNLITWNRVVLLHGPPGTGKTSLCKALAQKLTIRLSS 202
>sp|Q15645|PCH2_HUMAN Pachytene checkpoint protein 2 homolog OS=Homo sapiens GN=TRIP13
PE=1 SV=2
Length = 432
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 36/54 (66%), Positives = 45/54 (83%)
Query: 52 FKKYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEELKR 105
K++ NV+I TTSN+T ID+AF+DRADIKQYIG PSAAAIF I+ SC+EEL +
Sbjct: 287 IKRHSNVVILTTSNITEKIDVAFVDRADIKQYIGPPSAAAIFKIYLSCLEELMK 340
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 39/44 (88%)
Query: 3 FSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQT 46
FS V SN+I+WNRVVLLHGPPGTGKTSLCKA+AQKL+IRL +
Sbjct: 159 FSDKNVNSNLITWNRVVLLHGPPGTGKTSLCKALAQKLTIRLSS 202
>sp|D3K5L7|PCH2_PIG Pachytene checkpoint protein 2 homolog OS=Sus scrofa GN=TRIP13 PE=2
SV=1
Length = 431
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 39/44 (88%)
Query: 3 FSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQT 46
FS V SN+I+WNRVVLLHGPPGTGKTSLCKA+AQKL+IRL +
Sbjct: 159 FSDKNVDSNLITWNRVVLLHGPPGTGKTSLCKALAQKLTIRLSS 202
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/54 (62%), Positives = 45/54 (83%)
Query: 52 FKKYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEELKR 105
K++ NV+I TTSN+T ID+AF+DRADI+QY+G PSAAAIF I+ SC+EEL +
Sbjct: 287 IKRHSNVVILTTSNITERIDVAFVDRADIRQYVGPPSAAAIFKIYLSCLEELMK 340
>sp|E2R222|PCH2_CANFA Pachytene checkpoint protein 2 homolog OS=Canis familiaris
GN=TRIP13 PE=3 SV=1
Length = 432
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 39/44 (88%)
Query: 3 FSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQT 46
FS V SN+I+WNRVVLLHGPPGTGKTSLCKA+AQKL+IRL +
Sbjct: 159 FSDKNVDSNLIAWNRVVLLHGPPGTGKTSLCKALAQKLTIRLSS 202
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/54 (64%), Positives = 45/54 (83%)
Query: 52 FKKYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEELKR 105
K++ NV+I TTSN+T ID+AF+DRADI+QYIG PSAAAIF I+ SC+EEL +
Sbjct: 287 IKRHCNVVILTTSNITERIDVAFVDRADIRQYIGPPSAAAIFKIYLSCLEELMK 340
>sp|Q8H1F9|PCH2_ARATH Pachytene checkpoint protein 2 homolog OS=Arabidopsis thaliana
GN=At4g24710 PE=2 SV=1
Length = 467
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 41/55 (74%), Gaps = 7/55 (12%)
Query: 3 FSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPN 57
F+ V N++SWNR++LLHGPPGTGKTSLCKA+AQKLSIR + +YP+
Sbjct: 189 FTQKGVNPNLVSWNRIILLHGPPGTGKTSLCKALAQKLSIRCNS-------RYPH 236
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 38/52 (73%)
Query: 52 FKKYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEEL 103
K PNV+I TTSN+T AID+AF+DRADIK Y+G P+ + I SCVEEL
Sbjct: 317 LKSAPNVIILTTSNITTAIDVAFVDRADIKAYVGPPTLHVRYEILRSCVEEL 368
>sp|Q7XK25|PCH2_ORYSJ Pachytene checkpoint protein 2 homolog OS=Oryza sativa subsp.
japonica GN=Os04g0479000 PE=3 SV=3
Length = 471
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/44 (68%), Positives = 37/44 (84%)
Query: 3 FSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQT 46
F+ V ++SWNR+VLLHGPPGTGKTSLCKA+AQKLSIR ++
Sbjct: 193 FTEKGVDPCLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFKS 236
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/54 (57%), Positives = 41/54 (75%)
Query: 52 FKKYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEELKR 105
K +PNV+I TTSN+T AID+AF+DRADIK Y+G P+ A + I SC++EL R
Sbjct: 321 LKSWPNVIILTTSNITTAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELLR 374
>sp|A2XUN8|PCH2_ORYSI Pachytene checkpoint protein 2 homolog OS=Oryza sativa subsp.
indica GN=OsI_16324 PE=3 SV=2
Length = 471
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/44 (68%), Positives = 37/44 (84%)
Query: 3 FSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQT 46
F+ V ++SWNR+VLLHGPPGTGKTSLCKA+AQKLSIR ++
Sbjct: 193 FTEKGVDPCLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFKS 236
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/54 (57%), Positives = 41/54 (75%)
Query: 52 FKKYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEELKR 105
K +PNV+I TTSN+T AID+AF+DRADIK Y+G P+ A + I SC++EL R
Sbjct: 321 LKSWPNVIILTTSNITTAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELLR 374
>sp|Q09535|PCH2_CAEEL Putative pachytene checkpoint protein 2 OS=Caenorhabditis elegans
GN=pch-2 PE=3 SV=1
Length = 424
Score = 59.3 bits (142), Expect = 6e-09, Method: Composition-based stats.
Identities = 26/43 (60%), Positives = 33/43 (76%)
Query: 2 KFSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44
+ S V + II+ NR++LL GPPGTGKTSLCK +AQ LSIR+
Sbjct: 158 RLSEKHVNTKIINVNRLILLTGPPGTGKTSLCKGLAQHLSIRM 200
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 33/53 (62%)
Query: 53 KKYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEELKR 105
++ NVLI TSNL +D A +DRADI + +G PS A +++ S + EL R
Sbjct: 288 RRRDNVLILCTSNLESTLDKALVDRADIVKNVGQPSDFARYSMLKSSIMELAR 340
>sp|P38126|PCH2_YEAST Pachytene checkpoint protein 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PCH2 PE=1 SV=2
Length = 564
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 33/52 (63%)
Query: 52 FKKYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEEL 103
KKY N L TSNL ++D AF+DRAD Y+G P+A I +I C+EE+
Sbjct: 433 LKKYHNFLALATSNLLDSLDDAFVDRADGVFYVGNPTAEGILHILKVCIEEM 484
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 32/36 (88%)
Query: 10 SNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45
+ +I+ N+++L+HGPPGTGKT+LCKA+ QKLS+R +
Sbjct: 301 TTLITNNKLLLVHGPPGTGKTTLCKALCQKLSVRRE 336
>sp|C5CBU4|ARC_MICLC AAA ATPase forming ring-shaped complexes OS=Micrococcus luteus
(strain ATCC 4698 / DSM 20030 / JCM 1464 / NBRC 3333 /
NCIMB 9278 / NCTC 2665 / VKM Ac-2230) GN=arc PE=3 SV=1
Length = 584
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFF--KKYPNVLIFTTSNLTGAIDLAFLD 76
++L+GPPGTGKT L KAVA LS R + FF K P +L I + F D
Sbjct: 285 IMLYGPPGTGKTMLAKAVANALSARSADGERSFFLNVKGPELLNKYVGETERQIRVIF-D 343
Query: 77 RADIKQYIGFP 87
RA K GFP
Sbjct: 344 RAREKADAGFP 354
>sp|Q9ZPR1|CD48B_ARATH Cell division control protein 48 homolog B OS=Arabidopsis
thaliana GN=CDC48B PE=2 SV=1
Length = 603
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44
+ W R +LL+GPPGTGKTSL +AV Q+ L
Sbjct: 53 LKWPRGLLLYGPPGTGKTSLVRAVVQECDAHL 84
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 13 ISWNRVVLLHGPPGTGKTSL 32
IS R +LLHGPPG KT+L
Sbjct: 317 ISPMRGILLHGPPGCSKTTL 336
>sp|B0TF70|RUVB_HELMI Holliday junction ATP-dependent DNA helicase RuvB OS=Heliobacterium
modesticaldum (strain ATCC 51547 / Ice1) GN=ruvB PE=3
SV=1
Length = 370
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAFLD 76
VLL+GPPG GKT+L + +AQ+L ++L+ ++ P L +NL +D+ F+D
Sbjct: 56 VLLYGPPGLGKTTLAQIIAQELGVQLRVTSGPAIER-PGDLAAILTNLQ-PMDVLFID 111
>sp|O13764|PEX6_SCHPO Peroxisomal ATPase pex6 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=pex6 PE=3 SV=1
Length = 948
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/25 (72%), Positives = 21/25 (84%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIR 43
VLL+GPPGTGKT L KAVA +LS+
Sbjct: 691 VLLYGPPGTGKTLLAKAVATELSLE 715
>sp|Q49425|RUVB_MYCGE Holliday junction ATP-dependent DNA helicase RuvB OS=Mycoplasma
genitalium (strain ATCC 33530 / G-37 / NCTC 10195)
GN=ruvB PE=3 SV=1
Length = 307
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAFLDR 77
+LL+GPPG GKT+L + +A +L +LQ Q +K + L +L D+ F+D
Sbjct: 41 ILLYGPPGVGKTTLARLIANELKTKLQIIQGGHLQKPSDFL--NAISLIKKGDVLFIDE 97
>sp|Q9HPF0|CDCH_HALSA Protein CdcH OS=Halobacterium salinarum (strain ATCC 700922 / JCM
11081 / NRC-1) GN=cdcH PE=3 SV=1
Length = 742
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 18/23 (78%), Positives = 19/23 (82%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLS 41
VLLHGPPGTGKT L KAVA + S
Sbjct: 226 VLLHGPPGTGKTLLAKAVANETS 248
Score = 37.0 bits (84), Expect = 0.036, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 25/35 (71%), Gaps = 3/35 (8%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLS---IRLQTPQAI 50
VLL+GPPGTGKT + KAVA + + I ++ PQ +
Sbjct: 499 VLLYGPPGTGKTLMAKAVANETNANFISVRGPQLL 533
>sp|A3DBU4|RUVB_CLOTH Holliday junction ATP-dependent DNA helicase RuvB OS=Clostridium
thermocellum (strain ATCC 27405 / DSM 1237) GN=ruvB PE=3
SV=1
Length = 330
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAFLD 76
VLL+GPPG GKT+L +A +L + L+ +K P L +NL G D+ F+D
Sbjct: 55 VLLYGPPGLGKTTLAGIIASELGVNLRITSGPAIEK-PGDLAAILTNL-GNFDVLFID 110
>sp|Q5GT33|RUVB_WOLTR Holliday junction ATP-dependent DNA helicase RuvB OS=Wolbachia sp.
subsp. Brugia malayi (strain TRS) GN=ruvB PE=3 SV=1
Length = 326
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNV-LIFTTSNLTGAIDLAFLD 76
VLLHGPPG GKT+L + ++++L + + K ++ + TT N A D+ F+D
Sbjct: 54 VLLHGPPGLGKTTLAQIISKELRVSFRATSGPLLNKAGDLAAVLTTLN---AKDVLFID 109
>sp|Q9HNP9|PAN2_HALSA Proteasome-activating nucleotidase 2 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=pan2 PE=3
SV=1
Length = 411
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 17/21 (80%), Positives = 18/21 (85%)
Query: 19 VLLHGPPGTGKTSLCKAVAQK 39
VLLHGPPGTGKT L KAVA +
Sbjct: 189 VLLHGPPGTGKTMLAKAVANQ 209
>sp|C3PGA0|ARC_CORA7 AAA ATPase forming ring-shaped complexes OS=Corynebacterium
aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1)
GN=arc PE=3 SV=1
Length = 524
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFF 52
VLL+GPPG GKT + KAVA LS+ L +F
Sbjct: 229 VLLYGPPGCGKTLIAKAVAHSLSVSLGATAPSYF 262
>sp|C3NHF4|RFCL_SULIN Replication factor C large subunit OS=Sulfolobus islandicus
(strain Y.N.15.51 / Yellowstone #2) GN=rfcL PE=3 SV=1
Length = 405
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRL 44
+ VLLHGPPG GKT+L +AVA ++ L
Sbjct: 41 KAVLLHGPPGVGKTTLAEAVAHDYNLEL 68
>sp|P60123|RUVB1_RAT RuvB-like 1 OS=Rattus norvegicus GN=Ruvbl1 PE=1 SV=1
Length = 456
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRL 44
R VLL GPPGTGKT+L A+AQ+L ++
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKV 91
>sp|P60122|RUVB1_MOUSE RuvB-like 1 OS=Mus musculus GN=Ruvbl1 PE=1 SV=1
Length = 456
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRL 44
R VLL GPPGTGKT+L A+AQ+L ++
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKV 91
>sp|Q9Y265|RUVB1_HUMAN RuvB-like 1 OS=Homo sapiens GN=RUVBL1 PE=1 SV=1
Length = 456
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRL 44
R VLL GPPGTGKT+L A+AQ+L ++
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKV 91
>sp|Q8TX03|PAN_METKA Proteasome-activating nucleotidase OS=Methanopyrus kandleri (strain
AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=pan PE=3
SV=1
Length = 436
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 20/35 (57%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLS---IRLQTPQAI 50
VLL+GPPGTGKT L KAVA IRL P+ +
Sbjct: 216 VLLYGPPGTGKTLLAKAVANHADATFIRLAAPELV 250
>sp|B3ER84|RUVB_AMOA5 Holliday junction ATP-dependent DNA helicase RuvB OS=Amoebophilus
asiaticus (strain 5a2) GN=ruvB PE=3 SV=1
Length = 342
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAFLD 76
VLLHGPPG GKT+L +A +L ++ K P L +NL G D+ F+D
Sbjct: 59 VLLHGPPGLGKTTLAHIIANELGANIRITSGPVLDK-PGDLAGLLTNL-GPYDVLFID 114
>sp|Q9DE26|RUVB1_XENLA RuvB-like 1 OS=Xenopus laevis GN=ruvbl1 PE=2 SV=1
Length = 456
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 17/24 (70%), Positives = 20/24 (83%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKL 40
R VLL GPPGTGKT+L A+AQ+L
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQEL 87
>sp|P54815|MSP1_CAEEL Mitochondrial sorting homolog OS=Caenorhabditis elegans GN=mspn-1
PE=3 SV=2
Length = 342
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 1 MKFSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44
++F+ S+ S+++S R +LL+GPPG GKT L KAVA+ R
Sbjct: 103 LRFA-SQSGSHLLSPPRGILLYGPPGCGKTLLAKAVARAAGCRF 145
>sp|Q6BS73|PEX6_DEBHA Peroxisomal biogenesis factor 6 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=PEX6 PE=3 SV=2
Length = 1198
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 1 MKFSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42
M H ++ SN + +L +GPPGTGKT L KA+A S+
Sbjct: 857 MPLKHPELFSNGLKKRSGILFYGPPGTGKTLLAKAIATNFSL 898
>sp|Q9V2G3|RFCL_PYRAB Replication factor C large subunit OS=Pyrococcus abyssi (strain GE5
/ Orsay) GN=rfcL PE=1 SV=3
Length = 479
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 12/101 (11%)
Query: 6 SKVKSNIISW-------NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNV 58
SKVK+ I +W + +LL GPPG+GKT+ A+A++ + + A + Y +
Sbjct: 26 SKVKAWIEAWLHGNPPKKKALLLAGPPGSGKTTTVYALAREYNFEVIELNASDERTYDKI 85
Query: 59 LIFTTSNLTGAI-----DLAFLDRADIKQYIGFPSAAAIFN 94
+ + T I + FLD AD + G P A + +
Sbjct: 86 ARYVQAAYTMDILGKRRKIIFLDEADNIEPSGAPEIAKLID 126
>sp|Q5W274|PDR3_TOBAC Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum GN=PDR3
PE=2 SV=1
Length = 1447
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%)
Query: 10 SNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKY 55
S +I R+ LL GPPG GKTSL KA++ L L+ I + Y
Sbjct: 192 SGVIKPGRMTLLLGPPGCGKTSLLKALSGNLDKSLKVSGEISYNGY 237
>sp|P75242|RUVB_MYCPN Holliday junction ATP-dependent DNA helicase RuvB OS=Mycoplasma
pneumoniae (strain ATCC 29342 / M129) GN=ruvB PE=3 SV=1
Length = 307
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAFLDR 77
+LL+GPPG GKT+L + +A +++ +LQ Q ++ + L +L D+ F+D
Sbjct: 41 ILLYGPPGVGKTTLARLIASEMNTKLQIIQGGHLQRPSDFL--NAVSLIKKGDVLFVDE 97
>sp|P34123|PRS6B_DICDI 26S protease regulatory subunit 6B homolog OS=Dictyostelium
discoideum GN=psmC4 PE=1 SV=1
Length = 403
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 23/42 (54%), Positives = 27/42 (64%), Gaps = 5/42 (11%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLS---IRLQTPQAIFFKKY 55
R VLL+GPPGTGKT L KAVA S IR+ + F +KY
Sbjct: 185 RGVLLYGPPGTGKTMLAKAVAHHTSAAFIRVVGSE--FVQKY 224
>sp|A8FFR2|RUVB_BACP2 Holliday junction ATP-dependent DNA helicase RuvB OS=Bacillus
pumilus (strain SAFR-032) GN=ruvB PE=3 SV=1
Length = 334
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAFLD 76
VLL+GPPG GKT+L +A +++++L+T ++ ++ TS G D+ F+D
Sbjct: 56 VLLYGPPGLGKTTLASIIANEMNVQLRTTSGPAIERPGDLAAILTSLEPG--DVLFID 111
>sp|Q2FQ56|PAN_METHJ Proteasome-activating nucleotidase OS=Methanospirillum hungatei
(strain JF-1 / DSM 864) GN=pan PE=3 SV=1
Length = 412
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 21/38 (55%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKL-SIRLQTPQAIFFKKY 55
VLL+GPPGTGKT L KAVA + +I L T + +KY
Sbjct: 190 VLLYGPPGTGKTLLAKAVAHETHAIFLHTVGSELVQKY 227
>sp|Q9YAC7|PAN_AERPE Proteasome-activating nucleotidase OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=pan
PE=3 SV=1
Length = 409
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 17/19 (89%), Positives = 17/19 (89%)
Query: 19 VLLHGPPGTGKTSLCKAVA 37
VLLHGPPGTGKT L KAVA
Sbjct: 176 VLLHGPPGTGKTLLAKAVA 194
>sp|Q4A9R6|RUVB_MYCHJ Holliday junction ATP-dependent DNA helicase RuvB OS=Mycoplasma
hyopneumoniae (strain J / ATCC 25934 / NCTC 10110)
GN=ruvB PE=3 SV=2
Length = 318
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVL 59
+L +GPPGTGKT+L VA L +++ Q +K +VL
Sbjct: 42 ILFYGPPGTGKTTLANIVANVLEAKIKYVQGPLLEKKSDVL 82
>sp|Q4A7W4|RUVB_MYCH7 Holliday junction ATP-dependent DNA helicase RuvB OS=Mycoplasma
hyopneumoniae (strain 7448) GN=ruvB PE=3 SV=2
Length = 318
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVL 59
+L +GPPGTGKT+L VA L +++ Q +K +VL
Sbjct: 42 ILFYGPPGTGKTTLANIVANVLEAKIKYVQGPLLEKKSDVL 82
>sp|Q600N3|RUVB_MYCH2 Holliday junction ATP-dependent DNA helicase RuvB OS=Mycoplasma
hyopneumoniae (strain 232) GN=ruvB PE=3 SV=1
Length = 318
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVL 59
+L +GPPGTGKT+L VA L +++ Q +K +VL
Sbjct: 42 ILFYGPPGTGKTTLANIVANVLEAKIKYVQGPLLEKKSDVL 82
>sp|P33289|PEX6_PICPA Peroxisomal biogenesis factor 6 OS=Komagataella pastoris GN=PEX6
PE=3 SV=1
Length = 1165
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 1 MKFSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42
M H ++ SN I +L +GPPGTGKT L KA+A ++
Sbjct: 837 MPMKHPELFSNGIKKRSGILFYGPPGTGKTLLAKAIATNFAL 878
>sp|Q2GLG1|RUVB_ANAPZ Holliday junction ATP-dependent DNA helicase RuvB OS=Anaplasma
phagocytophilum (strain HZ) GN=ruvB PE=3 SV=1
Length = 329
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAFLD 76
VLL+GPPG GKT+L +A++L + L++ K ++ T NL +D+ F+D
Sbjct: 55 VLLYGPPGLGKTTLAHIIAKELKVSLRSTSGPLLSKAGDLAAILT-NLQ-PMDVLFID 110
>sp|P78578|PRS6B_ASPNG 26S protease regulatory subunit 6B homolog OS=Aspergillus niger
GN=tbpA PE=3 SV=1
Length = 423
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 27/42 (64%), Gaps = 5/42 (11%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLS---IRLQTPQAIFFKKY 55
R VLL+GPPGTGKT L KAVA + IR+ + F +KY
Sbjct: 201 RGVLLYGPPGTGKTMLVKAVANSTTASFIRVNGSE--FVQKY 240
>sp|Q8FTE3|ARC_COREF AAA ATPase forming ring-shaped complexes OS=Corynebacterium
efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM
11189 / NBRC 100395) GN=arc PE=3 SV=1
Length = 526
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFF 52
VLL+GPPG GKT + KAVA LS R+ +F
Sbjct: 250 VLLYGPPGCGKTLIAKAVANSLSQRIGDAGTSYF 283
>sp|Q7FMW4|PDR15_ORYSJ Pleiotropic drug resistance protein 15 OS=Oryza sativa subsp.
japonica GN=PDR15 PE=3 SV=1
Length = 1509
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 10 SNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKY 55
S I+ +R+ LL GPP +GKT+L A+A KL L+T + + Y
Sbjct: 216 SGIVRPSRMTLLLGPPSSGKTTLLLALAGKLDPTLETSGEVTYNGY 261
>sp|B8GGN4|PAN_METPE Proteasome-activating nucleotidase OS=Methanosphaerula palustris
(strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=pan PE=3
SV=1
Length = 412
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 16/21 (76%), Positives = 18/21 (85%)
Query: 19 VLLHGPPGTGKTSLCKAVAQK 39
VLLHGPPGTGKT L +AVA +
Sbjct: 190 VLLHGPPGTGKTLLARAVAHQ 210
>sp|Q9HRW6|PAN1_HALSA Proteasome-activating nucleotidase 1 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=pan1 PE=3
SV=2
Length = 407
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 16/21 (76%), Positives = 18/21 (85%)
Query: 19 VLLHGPPGTGKTSLCKAVAQK 39
VLLHGPPGTGKT + KAVA +
Sbjct: 186 VLLHGPPGTGKTLMAKAVASQ 206
>sp|Q1AWE0|RUVB_RUBXD Holliday junction ATP-dependent DNA helicase RuvB OS=Rubrobacter
xylanophilus (strain DSM 9941 / NBRC 16129) GN=ruvB PE=3
SV=1
Length = 355
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAFLD 76
+LL GPPG GKTSLC+ +A ++ ++L ++ ++ TS G D F+D
Sbjct: 77 MLLAGPPGLGKTSLCRILAAEMGVQLHPTSGPSLERAGDMAAILTSLEEG--DFLFID 132
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,042,889
Number of Sequences: 539616
Number of extensions: 1258475
Number of successful extensions: 15178
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1826
Number of HSP's successfully gapped in prelim test: 101
Number of HSP's that attempted gapping in prelim test: 13160
Number of HSP's gapped (non-prelim): 2114
length of query: 105
length of database: 191,569,459
effective HSP length: 74
effective length of query: 31
effective length of database: 151,637,875
effective search space: 4700774125
effective search space used: 4700774125
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)