Query psy4924
Match_columns 105
No_of_seqs 157 out of 1083
Neff 9.4
Searched_HMMs 46136
Date Fri Aug 16 21:19:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4924.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4924hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1222 RPT1 ATP-dependent 26S 99.9 9.9E-22 2.1E-26 135.0 8.8 91 13-103 182-338 (406)
2 KOG0744|consensus 99.8 3.8E-21 8.2E-26 131.0 5.9 103 3-105 164-345 (423)
3 KOG0733|consensus 99.8 1.4E-20 3E-25 136.4 9.0 91 13-103 220-377 (802)
4 KOG0730|consensus 99.8 4.6E-20 1E-24 134.2 9.0 91 13-103 465-618 (693)
5 KOG0738|consensus 99.8 7.1E-20 1.5E-24 127.2 6.9 93 10-102 239-397 (491)
6 KOG0733|consensus 99.8 6.5E-19 1.4E-23 127.8 8.8 89 13-101 542-693 (802)
7 KOG0734|consensus 99.8 2.5E-19 5.4E-24 128.6 6.5 89 15-103 336-487 (752)
8 KOG0737|consensus 99.8 6.5E-19 1.4E-23 121.4 7.7 91 11-101 122-275 (386)
9 CHL00195 ycf46 Ycf46; Provisio 99.8 1.7E-18 3.6E-23 124.8 9.6 91 13-103 256-408 (489)
10 KOG0731|consensus 99.8 6.1E-19 1.3E-23 130.8 7.0 90 14-103 342-498 (774)
11 KOG0743|consensus 99.8 1.2E-18 2.5E-23 122.7 8.0 93 9-101 228-384 (457)
12 COG1223 Predicted ATPase (AAA+ 99.8 1.3E-18 2.8E-23 116.1 7.6 88 16-103 151-300 (368)
13 PTZ00454 26S protease regulato 99.7 3E-17 6.5E-22 116.0 9.9 90 13-102 176-331 (398)
14 TIGR03689 pup_AAA proteasome A 99.7 2.8E-17 6.1E-22 118.8 9.2 90 13-102 213-380 (512)
15 COG0464 SpoVK ATPases of the A 99.7 3.1E-17 6.7E-22 118.6 8.9 89 13-101 273-424 (494)
16 TIGR01243 CDC48 AAA family ATP 99.7 3.7E-17 8E-22 122.8 9.5 90 13-102 484-637 (733)
17 TIGR01241 FtsH_fam ATP-depende 99.7 7E-17 1.5E-21 116.9 9.7 90 13-102 85-240 (495)
18 PRK03992 proteasome-activating 99.7 7.9E-17 1.7E-21 113.7 9.5 90 13-102 162-317 (389)
19 KOG0740|consensus 99.7 3.3E-17 7.2E-22 115.6 6.8 95 8-102 178-335 (428)
20 KOG0727|consensus 99.7 7.2E-17 1.6E-21 107.8 7.2 90 13-102 186-341 (408)
21 PLN00020 ribulose bisphosphate 99.7 2.1E-16 4.4E-21 110.1 8.6 88 13-102 145-313 (413)
22 PTZ00361 26 proteosome regulat 99.7 2.2E-16 4.7E-21 112.6 8.8 90 13-102 214-369 (438)
23 KOG0739|consensus 99.7 7.5E-17 1.6E-21 109.5 5.4 85 16-100 166-312 (439)
24 KOG0652|consensus 99.7 3.2E-16 6.9E-21 105.1 7.3 90 13-102 202-357 (424)
25 TIGR01242 26Sp45 26S proteasom 99.7 9.1E-16 2E-20 107.4 9.8 90 13-102 153-308 (364)
26 COG0465 HflB ATP-dependent Zn 99.7 2.9E-16 6.4E-21 114.6 7.3 86 16-101 183-334 (596)
27 KOG0736|consensus 99.7 7.9E-16 1.7E-20 114.1 9.0 90 13-102 702-859 (953)
28 KOG0728|consensus 99.7 5.1E-16 1.1E-20 103.7 7.3 89 13-101 178-332 (404)
29 PF05496 RuvB_N: Holliday junc 99.6 1E-15 2.2E-20 100.5 8.1 85 16-100 50-192 (233)
30 CHL00176 ftsH cell division pr 99.6 1.4E-15 3.1E-20 112.6 9.5 89 14-102 214-368 (638)
31 KOG0735|consensus 99.6 2.2E-15 4.7E-20 111.2 8.5 91 13-103 698-851 (952)
32 PRK10733 hflB ATP-dependent me 99.6 3.7E-15 8.1E-20 110.8 9.0 88 15-102 184-337 (644)
33 KOG0742|consensus 99.6 3E-15 6.6E-20 105.3 7.6 89 16-104 384-532 (630)
34 KOG0729|consensus 99.6 4.7E-16 1E-20 104.6 3.0 86 13-98 208-359 (435)
35 KOG0651|consensus 99.6 3.1E-15 6.7E-20 101.9 4.5 85 13-97 163-313 (388)
36 CHL00206 ycf2 Ycf2; Provisiona 99.6 2.2E-14 4.7E-19 114.2 9.3 43 55-97 1770-1814(2281)
37 TIGR01243 CDC48 AAA family ATP 99.6 2.7E-14 5.8E-19 107.6 9.3 89 13-101 209-360 (733)
38 COG2255 RuvB Holliday junction 99.5 8.2E-14 1.8E-18 94.0 9.0 86 15-101 51-195 (332)
39 KOG0726|consensus 99.5 1.4E-14 3E-19 98.5 4.8 86 13-98 216-367 (440)
40 PF00004 AAA: ATPase family as 99.5 4E-14 8.6E-19 85.4 6.3 67 19-85 1-131 (132)
41 COG2256 MGS1 ATPase related to 99.5 6.2E-14 1.3E-18 98.1 7.9 96 5-101 35-177 (436)
42 COG0466 Lon ATP-dependent Lon 99.5 1.1E-13 2.4E-18 102.3 8.2 84 15-100 349-508 (782)
43 TIGR01650 PD_CobS cobaltochela 99.5 3.7E-13 8.1E-18 92.8 9.7 87 13-99 61-232 (327)
44 KOG0741|consensus 99.5 1.7E-14 3.7E-19 104.0 3.0 90 13-102 253-416 (744)
45 PRK00080 ruvB Holliday junctio 99.4 1.6E-12 3.4E-17 90.0 9.9 87 16-102 51-195 (328)
46 TIGR00635 ruvB Holliday juncti 99.4 2.3E-12 5E-17 88.1 10.6 86 16-101 30-173 (305)
47 KOG0732|consensus 99.4 6.4E-13 1.4E-17 101.7 7.9 87 13-99 296-450 (1080)
48 KOG0730|consensus 99.4 1E-12 2.3E-17 96.3 8.2 91 13-103 215-367 (693)
49 KOG2004|consensus 99.4 1.1E-12 2.3E-17 97.3 7.7 83 15-99 437-595 (906)
50 PRK08118 topology modulation p 99.4 1.5E-12 3.2E-17 82.6 7.4 82 17-101 2-102 (167)
51 TIGR00763 lon ATP-dependent pr 99.4 5.1E-12 1.1E-16 95.8 9.7 85 15-100 346-505 (775)
52 PRK07261 topology modulation p 99.4 3.9E-12 8.4E-17 80.9 7.3 82 18-101 2-102 (171)
53 COG0714 MoxR-like ATPases [Gen 99.3 8.7E-12 1.9E-16 86.4 8.6 86 13-98 40-201 (329)
54 TIGR02640 gas_vesic_GvpN gas v 99.3 1.4E-11 3E-16 83.1 9.2 43 56-99 150-197 (262)
55 KOG2028|consensus 99.3 1.9E-11 4.1E-16 85.5 8.1 97 6-103 150-297 (554)
56 PF07726 AAA_3: ATPase family 99.3 5.6E-12 1.2E-16 76.4 4.8 62 18-79 1-130 (131)
57 PHA02244 ATPase-like protein 99.3 3.2E-11 6.8E-16 84.5 9.1 76 13-89 116-263 (383)
58 PF07728 AAA_5: AAA domain (dy 99.3 2.1E-11 4.6E-16 74.7 6.7 32 18-49 1-32 (139)
59 TIGR02881 spore_V_K stage V sp 99.3 5.9E-11 1.3E-15 79.9 9.3 33 70-102 161-193 (261)
60 PRK06893 DNA replication initi 99.3 2.8E-11 6E-16 80.2 7.1 86 16-101 39-175 (229)
61 CHL00181 cbbX CbbX; Provisiona 99.2 1E-10 2.2E-15 79.9 8.6 89 15-103 58-212 (287)
62 PRK10787 DNA-binding ATP-depen 99.2 1.1E-10 2.5E-15 88.6 9.6 85 15-101 348-507 (784)
63 PRK08084 DNA replication initi 99.2 1.1E-10 2.3E-15 77.7 7.9 85 16-100 45-180 (235)
64 PRK06620 hypothetical protein; 99.2 1.3E-10 2.7E-15 76.4 7.7 84 17-101 45-161 (214)
65 PRK13342 recombination factor 99.2 2.5E-10 5.4E-15 81.4 8.9 85 17-102 37-166 (413)
66 TIGR02880 cbbX_cfxQ probable R 99.2 1.9E-10 4.1E-15 78.5 7.9 89 15-103 57-211 (284)
67 PRK09087 hypothetical protein; 99.1 2.3E-10 4.9E-15 75.8 7.1 87 16-102 44-168 (226)
68 TIGR02639 ClpA ATP-dependent C 99.1 3.1E-10 6.7E-15 85.9 7.6 86 16-102 203-360 (731)
69 KOG0736|consensus 99.1 4.5E-10 9.7E-15 84.2 8.1 87 16-102 431-578 (953)
70 COG1126 GlnQ ABC-type polar am 99.1 8.5E-11 1.8E-15 76.9 3.6 44 1-44 10-56 (240)
71 PRK14962 DNA polymerase III su 99.1 7.8E-10 1.7E-14 80.1 8.9 84 17-101 37-190 (472)
72 PRK06217 hypothetical protein; 99.1 1.7E-10 3.7E-15 73.9 4.9 79 18-99 3-105 (183)
73 PRK13949 shikimate kinase; Pro 99.1 2.4E-10 5.1E-15 72.6 5.1 33 17-49 2-34 (169)
74 PF05673 DUF815: Protein of un 99.1 2E-09 4.4E-14 71.7 9.3 87 15-101 51-208 (249)
75 PHA02544 44 clamp loader, smal 99.1 1.3E-09 2.8E-14 74.9 8.6 83 17-100 44-173 (316)
76 PRK04195 replication factor C 99.1 1E-09 2.2E-14 79.7 8.2 85 16-101 39-174 (482)
77 PRK08727 hypothetical protein; 99.1 1.1E-09 2.5E-14 72.7 7.9 85 16-100 41-175 (233)
78 PF00308 Bac_DnaA: Bacterial d 99.0 1.5E-09 3.3E-14 71.5 7.6 86 17-102 35-181 (219)
79 COG0563 Adk Adenylate kinase a 99.0 2.3E-10 5E-15 73.3 3.5 81 18-102 2-102 (178)
80 PRK11034 clpA ATP-dependent Cl 99.0 9.6E-10 2.1E-14 83.3 7.3 46 56-102 314-364 (758)
81 PRK10865 protein disaggregatio 99.0 1.4E-09 3.1E-14 83.4 8.3 85 16-101 199-355 (857)
82 PRK00149 dnaA chromosomal repl 99.0 1E-09 2.2E-14 79.0 7.0 86 17-102 149-295 (450)
83 PRK05642 DNA replication initi 99.0 2.1E-09 4.5E-14 71.5 8.0 84 17-100 46-179 (234)
84 TIGR00362 DnaA chromosomal rep 99.0 1.1E-09 2.4E-14 77.9 7.0 86 17-102 137-283 (405)
85 COG0703 AroK Shikimate kinase 99.0 5.7E-10 1.2E-14 70.8 4.9 34 16-49 2-35 (172)
86 PF13207 AAA_17: AAA domain; P 99.0 2.9E-10 6.3E-15 67.9 3.2 83 18-102 1-114 (121)
87 COG1120 FepC ABC-type cobalami 99.0 2.9E-10 6.2E-15 76.4 3.3 48 1-48 10-60 (258)
88 PRK13341 recombination factor 99.0 1.9E-09 4.1E-14 81.4 7.8 84 17-101 53-182 (725)
89 PLN03025 replication factor C 99.0 3.9E-09 8.4E-14 73.0 8.5 84 17-101 35-172 (319)
90 PRK14956 DNA polymerase III su 99.0 4E-09 8.6E-14 76.3 8.7 82 18-100 42-193 (484)
91 PRK11331 5-methylcytosine-spec 99.0 5.4E-09 1.2E-13 75.0 9.2 30 13-42 191-220 (459)
92 PRK08903 DnaA regulatory inact 99.0 4.6E-09 9.9E-14 69.2 8.2 86 15-100 41-170 (227)
93 PRK13407 bchI magnesium chelat 99.0 8.6E-09 1.9E-13 71.8 9.8 44 56-99 170-215 (334)
94 PRK12422 chromosomal replicati 99.0 2.5E-09 5.4E-14 77.0 7.2 85 17-102 142-286 (445)
95 cd00009 AAA The AAA+ (ATPases 99.0 5.7E-09 1.2E-13 63.0 7.7 26 15-40 18-43 (151)
96 PRK11034 clpA ATP-dependent Cl 98.9 8.3E-09 1.8E-13 78.3 9.7 86 18-103 490-669 (758)
97 COG3842 PotA ABC-type spermidi 98.9 7.5E-10 1.6E-14 77.3 3.6 46 1-46 13-61 (352)
98 COG3839 MalK ABC-type sugar tr 98.9 7.5E-10 1.6E-14 76.9 3.4 48 1-48 11-61 (338)
99 TIGR03346 chaperone_ClpB ATP-d 98.9 6.8E-09 1.5E-13 79.8 8.5 45 57-102 302-351 (852)
100 PRK06645 DNA polymerase III su 98.9 1.3E-08 2.9E-13 74.3 9.1 84 17-101 44-201 (507)
101 TIGR03420 DnaA_homol_Hda DnaA 98.9 1E-08 2.2E-13 67.2 7.8 28 14-41 36-63 (226)
102 TIGR02639 ClpA ATP-dependent C 98.9 1E-08 2.2E-13 77.7 8.7 86 18-103 486-665 (731)
103 COG1117 PstB ABC-type phosphat 98.9 4E-09 8.7E-14 69.2 5.6 79 2-87 16-99 (253)
104 COG1116 TauB ABC-type nitrate/ 98.9 1.3E-09 2.8E-14 72.6 3.4 45 2-46 12-59 (248)
105 PRK00131 aroK shikimate kinase 98.9 2.1E-09 4.5E-14 67.6 4.2 36 14-49 2-37 (175)
106 PRK14086 dnaA chromosomal repl 98.9 6.8E-09 1.5E-13 76.9 7.3 85 17-102 315-461 (617)
107 TIGR03345 VI_ClpV1 type VI sec 98.9 8.9E-09 1.9E-13 79.1 8.2 43 57-100 316-363 (852)
108 TIGR02030 BchI-ChlI magnesium 98.9 2.9E-08 6.3E-13 69.3 9.9 43 56-98 173-217 (337)
109 PRK07003 DNA polymerase III su 98.9 1.3E-08 2.7E-13 77.0 8.6 82 18-100 40-191 (830)
110 PRK14961 DNA polymerase III su 98.9 2.1E-08 4.5E-13 70.6 9.2 44 56-100 148-191 (363)
111 smart00350 MCM minichromosome 98.9 3E-08 6.5E-13 72.5 10.3 45 56-100 342-400 (509)
112 cd02020 CMPK Cytidine monophos 98.9 8.6E-09 1.9E-13 63.2 6.1 75 19-98 2-103 (147)
113 PRK14960 DNA polymerase III su 98.9 1.4E-08 3E-13 75.9 8.1 84 17-101 38-191 (702)
114 PRK09862 putative ATP-dependen 98.9 1.3E-08 2.9E-13 74.2 7.9 29 13-41 207-235 (506)
115 PRK13531 regulatory ATPase Rav 98.9 1.6E-08 3.5E-13 73.2 8.1 29 13-41 36-64 (498)
116 PRK12323 DNA polymerase III su 98.9 1E-08 2.2E-13 76.5 7.0 82 18-100 40-196 (700)
117 KOG0989|consensus 98.8 1.4E-08 3E-13 69.5 7.1 28 16-43 57-84 (346)
118 PRK07994 DNA polymerase III su 98.8 2.1E-08 4.6E-13 74.9 8.6 81 19-100 41-191 (647)
119 PRK00625 shikimate kinase; Pro 98.8 5E-09 1.1E-13 66.8 4.6 32 18-49 2-33 (173)
120 PRK05057 aroK shikimate kinase 98.8 7.7E-09 1.7E-13 65.8 5.4 34 16-49 4-37 (172)
121 COG1125 OpuBA ABC-type proline 98.8 7.8E-09 1.7E-13 69.4 5.2 43 1-43 9-54 (309)
122 PRK06547 hypothetical protein; 98.8 4.7E-08 1E-12 62.3 8.5 35 15-49 14-48 (172)
123 PRK14958 DNA polymerase III su 98.8 1.9E-08 4E-13 73.6 7.4 27 17-43 39-65 (509)
124 COG1121 ZnuC ABC-type Mn/Zn tr 98.8 9.4E-09 2E-13 68.9 5.3 47 2-48 13-62 (254)
125 COG3638 ABC-type phosphate/pho 98.8 1.6E-08 3.4E-13 67.1 6.3 44 1-44 11-58 (258)
126 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.8 3.5E-09 7.6E-14 69.3 3.2 40 6-45 17-59 (218)
127 PRK03839 putative kinase; Prov 98.8 4.8E-09 1E-13 66.9 3.7 32 18-49 2-33 (180)
128 PRK14957 DNA polymerase III su 98.8 3.9E-08 8.4E-13 72.4 8.8 82 18-100 40-191 (546)
129 PF01078 Mg_chelatase: Magnesi 98.8 1.2E-08 2.5E-13 66.6 5.4 28 15-42 21-48 (206)
130 PRK14951 DNA polymerase III su 98.8 5E-08 1.1E-12 72.7 9.4 82 18-100 40-196 (618)
131 smart00382 AAA ATPases associa 98.8 6E-09 1.3E-13 62.3 3.7 29 16-44 2-30 (148)
132 cd03261 ABC_Org_Solvent_Resist 98.8 3.4E-09 7.5E-14 70.1 2.9 43 2-44 9-54 (235)
133 cd03269 ABC_putative_ATPase Th 98.8 3.6E-09 7.9E-14 68.9 2.9 42 2-43 9-53 (210)
134 cd03235 ABC_Metallic_Cations A 98.8 4E-09 8.6E-14 68.9 3.0 43 2-44 8-53 (213)
135 TIGR03608 L_ocin_972_ABC putat 98.8 4E-09 8.7E-14 68.4 3.0 42 2-43 7-51 (206)
136 cd03259 ABC_Carb_Solutes_like 98.8 4.4E-09 9.6E-14 68.6 3.2 43 2-44 9-54 (213)
137 cd03301 ABC_MalK_N The N-termi 98.8 4.1E-09 9E-14 68.7 3.1 44 2-45 9-55 (213)
138 PRK07940 DNA polymerase III su 98.8 4.1E-08 9E-13 69.8 8.3 81 16-97 36-186 (394)
139 TIGR01188 drrA daunorubicin re 98.8 4.9E-09 1.1E-13 72.0 3.5 45 1-45 1-48 (302)
140 cd03224 ABC_TM1139_LivF_branch 98.8 4.9E-09 1.1E-13 68.7 3.4 43 2-44 9-54 (222)
141 PRK14963 DNA polymerase III su 98.8 4.6E-08 1E-12 71.5 8.7 45 56-101 145-189 (504)
142 TIGR02315 ABC_phnC phosphonate 98.8 5.9E-09 1.3E-13 69.3 3.8 41 2-42 10-54 (243)
143 cd03222 ABC_RNaseL_inhibitor T 98.8 4.1E-09 9E-14 67.5 2.9 45 2-46 9-55 (177)
144 PRK14088 dnaA chromosomal repl 98.8 1.4E-08 3.1E-13 73.1 5.9 25 17-41 131-155 (440)
145 cd03262 ABC_HisP_GlnQ_permease 98.8 4.7E-09 1E-13 68.4 3.2 42 2-43 9-53 (213)
146 cd03265 ABC_DrrA DrrA is the A 98.8 4.5E-09 9.7E-14 69.0 3.0 42 2-43 9-53 (220)
147 cd03225 ABC_cobalt_CbiO_domain 98.8 5.4E-09 1.2E-13 68.1 3.4 42 2-43 8-54 (211)
148 cd03258 ABC_MetN_methionine_tr 98.8 5.8E-09 1.3E-13 68.9 3.6 38 7-44 19-59 (233)
149 cd03260 ABC_PstB_phosphate_tra 98.8 7E-09 1.5E-13 68.3 3.9 39 2-40 9-50 (227)
150 cd03296 ABC_CysA_sulfate_impor 98.8 4.3E-09 9.3E-14 69.9 2.9 44 2-45 11-57 (239)
151 cd03226 ABC_cobalt_CbiO_domain 98.8 4.9E-09 1.1E-13 68.1 3.1 43 2-44 8-54 (205)
152 PRK14949 DNA polymerase III su 98.8 4.6E-08 9.9E-13 75.1 8.7 82 18-100 40-191 (944)
153 COG4604 CeuD ABC-type enteroch 98.8 6.2E-09 1.3E-13 67.7 3.5 49 1-49 9-60 (252)
154 PRK10247 putative ABC transpor 98.8 6.7E-09 1.5E-13 68.5 3.7 43 2-44 16-61 (225)
155 COG0593 DnaA ATPase involved i 98.8 5.3E-08 1.2E-12 69.2 8.4 85 16-100 113-257 (408)
156 cd03294 ABC_Pro_Gly_Bertaine T 98.8 6.5E-09 1.4E-13 70.3 3.6 42 2-43 33-77 (269)
157 cd03256 ABC_PhnC_transporter A 98.8 6.2E-09 1.4E-13 69.0 3.5 41 2-42 9-53 (241)
158 cd03263 ABC_subfamily_A The AB 98.8 6.1E-09 1.3E-13 68.2 3.3 44 2-45 9-57 (220)
159 CHL00081 chlI Mg-protoporyphyr 98.8 1.1E-07 2.4E-12 66.7 9.7 44 56-99 186-231 (350)
160 cd03218 ABC_YhbG The ABC trans 98.8 6E-09 1.3E-13 68.8 3.3 43 2-44 9-54 (232)
161 TIGR03410 urea_trans_UrtE urea 98.8 5.4E-09 1.2E-13 69.0 3.1 44 2-45 9-55 (230)
162 cd03219 ABC_Mj1267_LivG_branch 98.8 4.9E-09 1.1E-13 69.4 2.9 43 2-44 9-54 (236)
163 PRK13947 shikimate kinase; Pro 98.8 8.6E-09 1.9E-13 65.0 3.8 32 18-49 3-34 (171)
164 cd03293 ABC_NrtD_SsuB_transpor 98.8 5.6E-09 1.2E-13 68.5 3.0 40 6-45 17-59 (220)
165 PRK14964 DNA polymerase III su 98.8 5.4E-08 1.2E-12 70.8 8.3 27 17-43 36-62 (491)
166 cd03257 ABC_NikE_OppD_transpor 98.8 7.4E-09 1.6E-13 68.1 3.5 39 7-45 19-60 (228)
167 PRK11248 tauB taurine transpor 98.8 6E-09 1.3E-13 70.0 3.1 44 2-45 10-56 (255)
168 PRK10895 lipopolysaccharide AB 98.8 6.4E-09 1.4E-13 69.1 3.2 43 2-44 12-57 (241)
169 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.8 7.4E-09 1.6E-13 68.3 3.4 42 2-43 31-75 (224)
170 TIGR01166 cbiO cobalt transpor 98.8 9.3E-09 2E-13 66.1 3.7 42 3-44 2-46 (190)
171 PRK14530 adenylate kinase; Pro 98.8 1.1E-08 2.3E-13 67.1 4.1 32 16-47 3-34 (215)
172 cd03216 ABC_Carb_Monos_I This 98.8 6.5E-09 1.4E-13 65.5 2.9 42 2-43 9-53 (163)
173 PRK11124 artP arginine transpo 98.7 6.7E-09 1.4E-13 69.0 3.0 41 2-42 11-54 (242)
174 PRK11247 ssuB aliphatic sulfon 98.7 6.6E-09 1.4E-13 70.0 3.0 43 2-44 21-66 (257)
175 TIGR03864 PQQ_ABC_ATP ABC tran 98.7 6.5E-09 1.4E-13 68.9 2.9 44 2-45 10-56 (236)
176 TIGR00235 udk uridine kinase. 98.7 1.2E-07 2.7E-12 61.7 8.9 27 15-41 5-31 (207)
177 TIGR02673 FtsE cell division A 98.7 7.7E-09 1.7E-13 67.5 3.2 39 5-43 14-55 (214)
178 KOG0735|consensus 98.7 6.5E-08 1.4E-12 72.6 8.2 89 15-103 430-589 (952)
179 cd03229 ABC_Class3 This class 98.7 7.4E-09 1.6E-13 66.0 3.0 42 2-43 9-53 (178)
180 cd03268 ABC_BcrA_bacitracin_re 98.7 7.1E-09 1.5E-13 67.4 3.0 42 2-43 9-53 (208)
181 PF13671 AAA_33: AAA domain; P 98.7 5.9E-09 1.3E-13 63.8 2.4 32 18-49 1-32 (143)
182 PRK08233 hypothetical protein; 98.7 9.1E-08 2E-12 60.7 7.9 82 16-99 3-119 (182)
183 CHL00095 clpC Clp protease ATP 98.7 3.6E-08 7.9E-13 75.6 7.1 86 15-101 199-355 (821)
184 PRK13948 shikimate kinase; Pro 98.7 1.8E-08 4E-13 64.7 4.6 36 14-49 8-43 (182)
185 cd03267 ABC_NatA_like Similar 98.7 1.1E-08 2.4E-13 67.9 3.7 42 2-43 30-74 (236)
186 PF00485 PRK: Phosphoribulokin 98.7 1.8E-07 3.8E-12 60.5 9.2 27 18-44 1-27 (194)
187 cd00227 CPT Chloramphenicol (C 98.7 1.7E-08 3.8E-13 64.1 4.4 30 16-45 2-31 (175)
188 PRK13638 cbiO cobalt transport 98.7 8.9E-09 1.9E-13 69.6 3.2 42 2-43 10-54 (271)
189 cd03266 ABC_NatA_sodium_export 98.7 1.1E-08 2.3E-13 67.0 3.4 37 7-43 19-58 (218)
190 TIGR01978 sufC FeS assembly AT 98.7 8.1E-09 1.8E-13 68.5 2.9 39 2-40 9-50 (243)
191 PRK13540 cytochrome c biogenes 98.7 1E-08 2.2E-13 66.4 3.3 41 2-42 10-53 (200)
192 PRK11264 putative amino-acid A 98.7 9.7E-09 2.1E-13 68.5 3.2 41 2-42 12-55 (250)
193 TIGR02323 CP_lyasePhnK phospho 98.7 9.2E-09 2E-13 68.8 3.1 42 2-43 12-56 (253)
194 PRK14250 phosphate ABC transpo 98.7 1E-08 2.2E-13 68.3 3.2 42 2-43 12-56 (241)
195 cd00464 SK Shikimate kinase (S 98.7 1.3E-08 2.9E-13 62.9 3.5 32 18-49 1-32 (154)
196 COG1127 Ttg2A ABC-type transpo 98.7 1.4E-08 3.1E-13 67.5 3.8 46 1-46 16-64 (263)
197 COG1239 ChlI Mg-chelatase subu 98.7 1.7E-07 3.6E-12 66.6 9.3 50 51-100 181-232 (423)
198 cd03214 ABC_Iron-Siderophores_ 98.7 1.1E-08 2.3E-13 65.4 3.1 42 2-43 8-52 (180)
199 TIGR01288 nodI ATP-binding ABC 98.7 9.4E-09 2E-13 70.6 3.0 43 2-44 13-58 (303)
200 TIGR01359 UMP_CMP_kin_fam UMP- 98.7 1.3E-08 2.9E-13 64.8 3.5 30 19-48 2-31 (183)
201 PF12775 AAA_7: P-loop contain 98.7 6.4E-08 1.4E-12 65.8 7.0 47 56-103 147-196 (272)
202 COG4619 ABC-type uncharacteriz 98.7 1.8E-08 4E-13 64.1 4.0 43 5-47 15-60 (223)
203 cd03295 ABC_OpuCA_Osmoprotecti 98.7 1.2E-08 2.7E-13 67.8 3.4 42 2-43 9-54 (242)
204 cd03264 ABC_drug_resistance_li 98.7 8.9E-09 1.9E-13 67.1 2.7 41 2-43 9-52 (211)
205 TIGR00390 hslU ATP-dependent p 98.7 1.4E-08 3E-13 72.4 3.8 34 16-49 47-80 (441)
206 PRK14242 phosphate transporter 98.7 1.1E-08 2.5E-13 68.3 3.3 40 2-41 15-57 (253)
207 PRK13538 cytochrome c biogenes 98.7 1.1E-08 2.4E-13 66.5 3.1 44 2-45 10-56 (204)
208 cd03228 ABCC_MRP_Like The MRP 98.7 1.6E-08 3.5E-13 64.1 3.6 42 2-43 9-55 (171)
209 PRK13548 hmuV hemin importer A 98.7 1.1E-08 2.4E-13 68.7 3.1 44 2-45 11-57 (258)
210 PRK11831 putative ABC transpor 98.7 1E-08 2.2E-13 69.3 2.9 42 2-43 16-60 (269)
211 PRK13543 cytochrome c biogenes 98.7 1.4E-08 3.1E-13 66.4 3.5 44 2-45 20-66 (214)
212 PRK14247 phosphate ABC transpo 98.7 1.1E-08 2.4E-13 68.3 3.0 40 2-41 12-54 (250)
213 PRK14532 adenylate kinase; Pro 98.7 1.7E-08 3.6E-13 64.8 3.7 31 18-48 2-32 (188)
214 TIGR02902 spore_lonB ATP-depen 98.7 2.6E-07 5.6E-12 68.0 10.2 43 59-102 236-278 (531)
215 cd03230 ABC_DR_subfamily_A Thi 98.7 1.2E-08 2.7E-13 64.7 3.0 40 3-42 10-52 (173)
216 PRK13539 cytochrome c biogenes 98.7 1.3E-08 2.7E-13 66.4 3.1 42 2-43 11-55 (207)
217 PRK09493 glnQ glutamine ABC tr 98.7 1.2E-08 2.6E-13 67.8 3.0 42 2-43 10-54 (240)
218 PRK09544 znuC high-affinity zi 98.7 1.1E-08 2.5E-13 68.6 2.9 43 2-44 13-58 (251)
219 PRK14256 phosphate ABC transpo 98.7 1.3E-08 2.9E-13 68.0 3.2 40 2-41 13-55 (252)
220 PRK10744 pstB phosphate transp 98.7 1.3E-08 2.8E-13 68.5 3.1 40 2-41 22-64 (260)
221 TIGR00960 3a0501s02 Type II (G 98.7 1.3E-08 2.7E-13 66.6 3.0 37 7-43 17-56 (216)
222 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.7 1.2E-08 2.6E-13 63.1 2.7 41 3-43 10-53 (144)
223 PRK14274 phosphate ABC transpo 98.7 1.5E-08 3.2E-13 68.1 3.3 40 2-41 21-63 (259)
224 TIGR02442 Cob-chelat-sub cobal 98.7 2.6E-07 5.7E-12 69.2 10.2 43 56-98 168-212 (633)
225 PRK14087 dnaA chromosomal repl 98.7 6E-08 1.3E-12 70.0 6.6 34 69-102 255-290 (450)
226 PRK11701 phnK phosphonate C-P 98.7 1.4E-08 3.1E-13 68.1 3.3 43 2-44 15-60 (258)
227 COG1118 CysA ABC-type sulfate/ 98.7 1.9E-08 4E-13 69.0 3.8 46 2-47 11-59 (345)
228 TIGR02211 LolD_lipo_ex lipopro 98.7 1.5E-08 3.3E-13 66.4 3.3 39 7-45 19-60 (221)
229 TIGR01189 ccmA heme ABC export 98.7 1.4E-08 3E-13 65.7 3.0 42 2-43 9-53 (198)
230 TIGR03005 ectoine_ehuA ectoine 98.7 1.3E-08 2.7E-13 68.1 2.9 42 2-43 9-53 (252)
231 cd03247 ABCC_cytochrome_bd The 98.7 1.7E-08 3.7E-13 64.3 3.4 38 7-44 16-56 (178)
232 PRK14267 phosphate ABC transpo 98.7 1.3E-08 2.7E-13 68.1 2.9 41 2-42 13-56 (253)
233 PRK14235 phosphate transporter 98.7 1.5E-08 3.2E-13 68.5 3.2 40 2-41 28-70 (267)
234 PRK11300 livG leucine/isoleuci 98.7 1.2E-08 2.7E-13 68.2 2.9 44 2-45 14-60 (255)
235 cd03292 ABC_FtsE_transporter F 98.7 1.4E-08 3.1E-13 66.2 3.1 38 6-43 14-54 (214)
236 TIGR00678 holB DNA polymerase 98.7 2.7E-07 5.8E-12 59.2 8.9 41 57-98 126-166 (188)
237 PRK14969 DNA polymerase III su 98.7 7.9E-08 1.7E-12 70.6 7.1 27 17-43 39-65 (527)
238 PRK14273 phosphate ABC transpo 98.7 1.5E-08 3.2E-13 67.9 3.1 41 2-42 16-59 (254)
239 TIGR01186 proV glycine betaine 98.7 1.8E-08 3.9E-13 70.9 3.6 44 1-44 1-47 (363)
240 PRK10908 cell division protein 98.7 1.5E-08 3.3E-13 66.5 3.1 40 4-43 13-55 (222)
241 PRK11231 fecE iron-dicitrate t 98.7 1.4E-08 2.9E-13 68.1 2.9 43 2-44 11-56 (255)
242 TIGR03411 urea_trans_UrtD urea 98.7 1.7E-08 3.7E-13 67.0 3.3 43 2-44 11-56 (242)
243 COG1124 DppF ABC-type dipeptid 98.7 1.8E-08 3.8E-13 67.0 3.3 47 2-48 12-65 (252)
244 PRK14970 DNA polymerase III su 98.7 3.1E-07 6.8E-12 64.5 9.8 84 16-100 39-180 (367)
245 PRK13547 hmuV hemin importer A 98.7 1.2E-08 2.6E-13 69.2 2.6 41 2-42 10-53 (272)
246 PRK14527 adenylate kinase; Pro 98.7 3.5E-08 7.6E-13 63.6 4.6 35 14-48 4-38 (191)
247 PRK14248 phosphate ABC transpo 98.7 1.8E-08 3.9E-13 68.0 3.4 39 2-40 30-71 (268)
248 cd02021 GntK Gluconate kinase 98.7 2E-08 4.4E-13 62.1 3.4 31 19-49 2-32 (150)
249 PRK14241 phosphate transporter 98.7 1.4E-08 3E-13 68.2 2.8 40 2-41 13-55 (258)
250 PRK10253 iron-enterobactin tra 98.7 1.3E-08 2.9E-13 68.6 2.7 44 2-45 16-62 (265)
251 PRK05896 DNA polymerase III su 98.7 1.3E-07 2.9E-12 70.1 8.1 84 16-100 38-191 (605)
252 PRK14531 adenylate kinase; Pro 98.7 2.9E-08 6.2E-13 63.6 4.1 32 17-48 3-34 (183)
253 PRK11432 fbpC ferric transport 98.7 1.4E-08 3.1E-13 71.2 2.9 45 2-46 15-62 (351)
254 PRK10575 iron-hydroxamate tran 98.7 1.4E-08 3E-13 68.5 2.7 43 2-44 20-65 (265)
255 TIGR01313 therm_gnt_kin carboh 98.7 1.7E-08 3.7E-13 63.3 3.0 31 19-49 1-31 (163)
256 TIGR00972 3a0107s01c2 phosphat 98.7 1.7E-08 3.6E-13 67.4 3.1 41 2-42 10-53 (247)
257 PRK08691 DNA polymerase III su 98.7 1E-07 2.2E-12 71.6 7.5 84 17-101 39-192 (709)
258 PRK11614 livF leucine/isoleuci 98.7 1.6E-08 3.5E-13 67.0 3.0 44 2-45 14-60 (237)
259 PRK14253 phosphate ABC transpo 98.7 2E-08 4.4E-13 67.0 3.5 40 2-41 12-54 (249)
260 cd03223 ABCD_peroxisomal_ALDP 98.7 2.3E-08 5E-13 63.2 3.5 40 6-45 14-56 (166)
261 PRK11000 maltose/maltodextrin 98.7 1.5E-08 3.3E-13 71.5 2.9 44 2-45 12-58 (369)
262 TIGR03873 F420-0_ABC_ATP propo 98.7 1.6E-08 3.4E-13 67.8 2.9 44 2-45 10-56 (256)
263 PRK00440 rfc replication facto 98.7 3.6E-07 7.9E-12 62.6 9.6 84 17-101 39-175 (319)
264 PRK14251 phosphate ABC transpo 98.7 1.7E-08 3.7E-13 67.4 3.0 40 2-41 13-55 (251)
265 COG1131 CcmA ABC-type multidru 98.7 1.8E-08 4E-13 69.0 3.2 44 1-44 12-59 (293)
266 PRK14262 phosphate ABC transpo 98.7 1.8E-08 4E-13 67.2 3.1 40 2-41 12-54 (250)
267 COG2607 Predicted ATPase (AAA+ 98.7 3.4E-07 7.3E-12 61.1 8.9 88 15-102 84-241 (287)
268 COG1119 ModF ABC-type molybden 98.7 1.9E-08 4.1E-13 67.0 3.1 41 2-42 40-83 (257)
269 PRK14237 phosphate transporter 98.7 1.8E-08 3.9E-13 68.0 3.1 40 2-41 29-71 (267)
270 cd03254 ABCC_Glucan_exporter_l 98.7 2.4E-08 5.3E-13 65.8 3.6 42 2-43 11-56 (229)
271 TIGR01360 aden_kin_iso1 adenyl 98.7 3.5E-08 7.5E-13 62.9 4.2 32 16-47 3-34 (188)
272 PRK11629 lolD lipoprotein tran 98.7 1.9E-08 4.1E-13 66.6 3.0 37 7-43 23-62 (233)
273 TIGR03740 galliderm_ABC gallid 98.7 1.9E-08 4.1E-13 66.1 3.0 43 2-44 9-54 (223)
274 cd03246 ABCC_Protease_Secretio 98.7 3.1E-08 6.7E-13 62.9 3.8 37 7-43 16-55 (173)
275 TIGR03265 PhnT2 putative 2-ami 98.7 1.8E-08 3.8E-13 70.8 2.9 44 2-45 13-59 (353)
276 PRK05342 clpX ATP-dependent pr 98.7 3.1E-08 6.7E-13 70.8 4.2 35 15-49 107-141 (412)
277 PRK13536 nodulation factor exp 98.6 1.9E-08 4E-13 70.3 3.0 46 1-46 49-97 (340)
278 PRK14261 phosphate ABC transpo 98.6 2.1E-08 4.5E-13 67.1 3.1 40 2-41 15-57 (253)
279 cd03250 ABCC_MRP_domain1 Domai 98.6 2.7E-08 5.9E-13 64.6 3.5 40 7-46 19-61 (204)
280 TIGR02031 BchD-ChlD magnesium 98.6 2.5E-07 5.4E-12 68.8 9.0 45 56-100 126-174 (589)
281 cd03251 ABCC_MsbA MsbA is an e 98.6 2.5E-08 5.3E-13 65.9 3.4 38 7-44 16-56 (234)
282 PRK13946 shikimate kinase; Pro 98.6 3.7E-08 8.1E-13 63.2 4.1 34 16-49 10-43 (184)
283 PRK15056 manganese/iron transp 98.6 2E-08 4.2E-13 68.1 2.9 42 2-43 15-60 (272)
284 PRK14239 phosphate transporter 98.6 2E-08 4.3E-13 67.1 2.9 39 2-40 14-55 (252)
285 PRK10619 histidine/lysine/argi 98.6 2E-08 4.3E-13 67.4 2.9 42 2-43 14-58 (257)
286 TIGR02397 dnaX_nterm DNA polym 98.6 2.2E-07 4.7E-12 64.7 8.2 45 56-101 146-190 (355)
287 TIGR03522 GldA_ABC_ATP gliding 98.6 1.8E-08 3.9E-13 69.2 2.8 44 2-45 11-57 (301)
288 PRK05563 DNA polymerase III su 98.6 3.2E-07 7E-12 67.9 9.4 84 16-100 38-191 (559)
289 PRK13537 nodulation ABC transp 98.6 2E-08 4.4E-13 69.2 3.0 45 1-45 15-62 (306)
290 PRK09984 phosphonate/organopho 98.6 2E-08 4.2E-13 67.6 2.8 41 2-42 13-56 (262)
291 cd03245 ABCC_bacteriocin_expor 98.6 2.9E-08 6.4E-13 65.0 3.6 37 7-43 18-57 (220)
292 PRK11650 ugpC glycerol-3-phosp 98.6 2E-08 4.4E-13 70.5 2.9 44 2-45 12-59 (356)
293 cd03297 ABC_ModC_molybdenum_tr 98.6 2.7E-08 5.8E-13 65.0 3.4 42 1-43 8-50 (214)
294 PRK10636 putative ABC transpor 98.6 2.1E-08 4.6E-13 75.0 3.2 44 1-44 9-55 (638)
295 PTZ00301 uridine kinase; Provi 98.6 3.8E-07 8.3E-12 59.9 8.8 24 17-40 4-27 (210)
296 cd01428 ADK Adenylate kinase ( 98.6 2.8E-08 6.1E-13 63.7 3.3 32 18-49 1-32 (194)
297 PRK10584 putative ABC transpor 98.6 2.6E-08 5.7E-13 65.6 3.3 38 7-44 24-64 (228)
298 PRK14238 phosphate transporter 98.6 2.5E-08 5.5E-13 67.5 3.3 40 2-41 33-75 (271)
299 TIGR02928 orc1/cdc6 family rep 98.6 3.6E-07 7.7E-12 63.9 9.1 46 56-101 164-213 (365)
300 PRK14243 phosphate transporter 98.6 2.8E-08 6.1E-13 67.0 3.4 40 2-41 19-61 (264)
301 PRK14240 phosphate transporter 98.6 2.5E-08 5.4E-13 66.6 3.1 40 2-41 12-54 (250)
302 cd03231 ABC_CcmA_heme_exporter 98.6 2.7E-08 6E-13 64.5 3.2 42 2-43 9-53 (201)
303 PRK10938 putative molybdenum t 98.6 2.7E-08 5.7E-13 72.3 3.5 42 2-43 12-56 (490)
304 PRK14259 phosphate ABC transpo 98.6 2.3E-08 5.1E-13 67.6 3.0 40 2-41 22-64 (269)
305 PRK14255 phosphate ABC transpo 98.6 2.4E-08 5.3E-13 66.7 3.1 40 2-41 14-56 (252)
306 cd03236 ABC_RNaseL_inhibitor_d 98.6 3.5E-08 7.5E-13 66.5 3.8 46 1-46 8-56 (255)
307 COG4618 ArpD ABC-type protease 98.6 1.7E-08 3.7E-13 73.0 2.4 66 7-90 350-418 (580)
308 PRK13645 cbiO cobalt transport 98.6 2.6E-08 5.7E-13 67.9 3.2 37 8-44 26-65 (289)
309 PRK14249 phosphate ABC transpo 98.6 2.4E-08 5.1E-13 66.8 2.9 41 2-42 13-56 (251)
310 PRK14272 phosphate ABC transpo 98.6 2.4E-08 5.2E-13 66.7 2.9 41 2-42 13-56 (252)
311 TIGR00968 3a0106s01 sulfate AB 98.6 2.7E-08 5.8E-13 66.1 3.1 42 2-43 9-53 (237)
312 cd03300 ABC_PotA_N PotA is an 98.6 3E-08 6.4E-13 65.6 3.3 44 2-45 9-55 (232)
313 PRK10851 sulfate/thiosulfate t 98.6 2.4E-08 5.3E-13 70.0 3.0 44 2-45 11-57 (353)
314 PRK14260 phosphate ABC transpo 98.6 3.2E-08 6.8E-13 66.5 3.3 40 2-41 16-58 (259)
315 PRK14246 phosphate ABC transpo 98.6 3.6E-08 7.8E-13 66.3 3.6 43 1-43 18-63 (257)
316 PRK05201 hslU ATP-dependent pr 98.6 4.1E-08 8.9E-13 70.1 4.0 34 16-49 50-83 (443)
317 PRK09452 potA putrescine/sperm 98.6 2.4E-08 5.2E-13 70.6 2.8 43 2-44 23-68 (375)
318 PF01695 IstB_IS21: IstB-like 98.6 4.4E-08 9.5E-13 62.8 3.7 30 13-42 44-73 (178)
319 PRK14269 phosphate ABC transpo 98.6 2.7E-08 5.8E-13 66.4 2.9 40 2-41 11-53 (246)
320 PRK13541 cytochrome c biogenes 98.6 3.2E-08 6.9E-13 63.9 3.1 32 13-44 23-54 (195)
321 PRK10762 D-ribose transporter 98.6 2.6E-08 5.7E-13 72.5 3.0 44 2-45 13-59 (501)
322 PRK06526 transposase; Provisio 98.6 3.7E-08 8E-13 66.3 3.5 29 13-41 95-123 (254)
323 PTZ00088 adenylate kinase 1; P 98.6 4.4E-08 9.4E-13 65.1 3.8 33 17-49 7-39 (229)
324 cd00267 ABC_ATPase ABC (ATP-bi 98.6 3.4E-08 7.3E-13 61.7 3.1 43 3-45 9-54 (157)
325 cd03217 ABC_FeS_Assembly ABC-t 98.6 3E-08 6.6E-13 64.3 3.0 39 2-40 9-50 (200)
326 PRK14244 phosphate ABC transpo 98.6 3.3E-08 7.1E-13 66.1 3.2 40 2-41 14-56 (251)
327 PRK14265 phosphate ABC transpo 98.6 3.1E-08 6.7E-13 67.2 3.1 40 2-41 29-71 (274)
328 TIGR02903 spore_lon_C ATP-depe 98.6 4.5E-07 9.7E-12 67.8 9.4 44 58-102 324-368 (615)
329 PRK07133 DNA polymerase III su 98.6 3.7E-07 7.9E-12 69.0 9.0 82 17-99 41-189 (725)
330 PRK14266 phosphate ABC transpo 98.6 3.9E-08 8.5E-13 65.6 3.5 40 2-41 12-54 (250)
331 PRK03731 aroL shikimate kinase 98.6 5.1E-08 1.1E-12 61.6 3.9 33 17-49 3-35 (171)
332 PRK11147 ABC transporter ATPas 98.6 2.6E-08 5.7E-13 74.5 2.9 42 2-43 12-56 (635)
333 PRK14236 phosphate transporter 98.6 3.2E-08 6.8E-13 67.0 3.1 40 2-41 34-76 (272)
334 PRK14245 phosphate ABC transpo 98.6 3.2E-08 7E-13 66.1 3.1 39 2-40 12-53 (250)
335 PRK14268 phosphate ABC transpo 98.6 3.3E-08 7.2E-13 66.4 3.1 40 2-41 21-63 (258)
336 cd03290 ABCC_SUR1_N The SUR do 98.6 4.4E-08 9.6E-13 64.2 3.6 43 2-44 9-55 (218)
337 PRK09536 btuD corrinoid ABC tr 98.6 2.7E-08 5.9E-13 70.9 2.8 44 2-45 12-58 (402)
338 cd03253 ABCC_ATM1_transporter 98.6 4.1E-08 8.9E-13 65.0 3.5 39 6-44 14-55 (236)
339 PRK08181 transposase; Validate 98.6 3.8E-08 8.3E-13 66.8 3.4 30 13-42 103-132 (269)
340 PRK15064 ABC transporter ATP-b 98.6 3.4E-08 7.4E-13 72.4 3.4 41 2-42 10-53 (530)
341 PRK14953 DNA polymerase III su 98.6 3.2E-07 7E-12 66.9 8.3 44 57-101 149-192 (486)
342 PRK14270 phosphate ABC transpo 98.6 3.9E-08 8.4E-13 65.8 3.4 40 2-41 13-55 (251)
343 PRK13632 cbiO cobalt transport 98.6 4.1E-08 8.8E-13 66.5 3.5 38 6-43 22-62 (271)
344 cd03213 ABCG_EPDR ABCG transpo 98.6 3.2E-08 7E-13 63.9 2.9 35 6-40 22-59 (194)
345 PRK10078 ribose 1,5-bisphospho 98.6 4.2E-08 9.1E-13 63.0 3.3 30 16-45 2-31 (186)
346 PRK14275 phosphate ABC transpo 98.6 3.2E-08 7E-13 67.5 3.0 39 2-40 48-89 (286)
347 PRK14271 phosphate ABC transpo 98.6 3.1E-08 6.7E-13 67.3 2.8 40 2-41 30-72 (276)
348 PRK12377 putative replication 98.6 3.9E-08 8.3E-13 66.0 3.1 28 16-43 101-128 (248)
349 PRK10865 protein disaggregatio 98.6 6.5E-07 1.4E-11 69.1 10.1 33 71-103 750-782 (857)
350 PRK07764 DNA polymerase III su 98.6 4.5E-07 9.8E-12 69.6 9.2 26 18-43 39-64 (824)
351 cd03232 ABC_PDR_domain2 The pl 98.6 3.8E-08 8.3E-13 63.5 3.0 35 6-40 20-57 (192)
352 PRK09700 D-allose transporter 98.6 3.2E-08 6.9E-13 72.2 2.9 42 2-43 14-58 (510)
353 TIGR03258 PhnT 2-aminoethylpho 98.6 3.3E-08 7.2E-13 69.6 2.9 43 2-44 14-59 (362)
354 PRK14254 phosphate ABC transpo 98.6 3.2E-08 7E-13 67.5 2.8 40 2-41 48-90 (285)
355 PRK14952 DNA polymerase III su 98.6 4.6E-07 9.9E-12 67.3 8.9 26 18-43 37-62 (584)
356 TIGR03345 VI_ClpV1 type VI sec 98.6 4.3E-07 9.4E-12 70.0 9.0 23 18-40 598-620 (852)
357 CHL00131 ycf16 sulfate ABC tra 98.6 3.9E-08 8.4E-13 65.7 3.0 38 2-39 16-56 (252)
358 PRK14252 phosphate ABC transpo 98.6 3.6E-08 7.8E-13 66.4 2.9 40 2-41 25-67 (265)
359 COG0572 Udk Uridine kinase [Nu 98.6 8.1E-07 1.7E-11 58.5 9.0 28 16-43 8-35 (218)
360 TIGR01351 adk adenylate kinase 98.6 5.1E-08 1.1E-12 63.7 3.5 30 19-48 2-31 (210)
361 COG1102 Cmk Cytidylate kinase 98.6 5.3E-08 1.1E-12 61.3 3.3 32 18-49 2-33 (179)
362 PRK11819 putative ABC transpor 98.6 4.1E-08 8.9E-13 72.4 3.3 42 2-43 15-60 (556)
363 PRK14528 adenylate kinase; Pro 98.6 7.1E-08 1.5E-12 62.1 4.0 33 17-49 2-34 (186)
364 smart00763 AAA_PrkA PrkA AAA d 98.6 5.5E-08 1.2E-12 68.2 3.8 27 16-42 78-104 (361)
365 PRK09580 sufC cysteine desulfu 98.6 3.7E-08 8E-13 65.6 2.8 39 2-40 10-51 (248)
366 PRK13648 cbiO cobalt transport 98.6 4.7E-08 1E-12 66.1 3.3 36 8-43 24-62 (269)
367 cd03252 ABCC_Hemolysin The ABC 98.6 5.6E-08 1.2E-12 64.4 3.6 37 7-43 16-55 (237)
368 PRK09183 transposase/IS protei 98.6 5.9E-08 1.3E-12 65.5 3.7 29 13-41 99-127 (259)
369 PRK10419 nikE nickel transport 98.6 4.6E-08 1E-12 66.1 3.1 37 6-42 25-64 (268)
370 PRK11607 potG putrescine trans 98.6 3.8E-08 8.2E-13 69.6 2.8 43 2-44 28-73 (377)
371 PRK13549 xylose transporter AT 98.6 3.5E-08 7.6E-13 72.0 2.7 41 2-42 14-57 (506)
372 TIGR00368 Mg chelatase-related 98.6 4.3E-07 9.3E-12 66.4 8.3 27 13-39 208-234 (499)
373 PRK15439 autoinducer 2 ABC tra 98.6 3.8E-08 8.3E-13 71.9 2.9 42 2-43 20-64 (510)
374 COG2884 FtsE Predicted ATPase 98.6 9.2E-08 2E-12 61.8 4.3 46 2-47 10-59 (223)
375 TIGR03346 chaperone_ClpB ATP-d 98.6 6.9E-07 1.5E-11 69.0 9.8 32 72-103 748-779 (852)
376 PRK13649 cbiO cobalt transport 98.6 4.5E-08 9.8E-13 66.5 3.1 37 7-43 21-60 (280)
377 PRK13644 cbiO cobalt transport 98.6 5.4E-08 1.2E-12 66.0 3.4 42 2-43 10-55 (274)
378 PRK14959 DNA polymerase III su 98.6 3.3E-07 7.1E-12 68.3 7.7 83 17-100 39-191 (624)
379 CHL00095 clpC Clp protease ATP 98.6 7.2E-07 1.6E-11 68.6 9.8 31 73-103 705-735 (821)
380 COG1136 SalX ABC-type antimicr 98.6 5.7E-08 1.2E-12 64.2 3.4 35 8-42 20-57 (226)
381 PRK09111 DNA polymerase III su 98.6 6.6E-07 1.4E-11 66.7 9.3 28 17-44 47-74 (598)
382 PRK02496 adk adenylate kinase; 98.6 6.9E-08 1.5E-12 61.7 3.6 31 18-48 3-33 (184)
383 PRK14263 phosphate ABC transpo 98.6 4.8E-08 1E-12 65.9 3.0 40 2-41 17-59 (261)
384 TIGR02324 CP_lyasePhnL phospho 98.6 5.5E-08 1.2E-12 63.9 3.2 37 7-43 22-61 (224)
385 PRK15112 antimicrobial peptide 98.6 5.2E-08 1.1E-12 65.8 3.2 39 7-45 27-68 (267)
386 TIGR02322 phosphon_PhnN phosph 98.6 7.7E-08 1.7E-12 61.2 3.8 27 16-42 1-27 (179)
387 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.6 6.5E-08 1.4E-12 64.1 3.5 37 7-43 17-56 (238)
388 PRK15064 ABC transporter ATP-b 98.6 5E-08 1.1E-12 71.5 3.2 42 2-43 328-372 (530)
389 TIGR02868 CydC thiol reductant 98.6 5.8E-08 1.3E-12 71.0 3.5 45 2-46 343-391 (529)
390 TIGR03269 met_CoM_red_A2 methy 98.6 5.1E-08 1.1E-12 71.3 3.2 39 2-40 9-50 (520)
391 PRK11153 metN DL-methionine tr 98.6 4.7E-08 1E-12 68.3 2.9 38 6-43 18-58 (343)
392 COG0410 LivF ABC-type branched 98.6 7.1E-08 1.5E-12 63.7 3.5 46 2-47 12-60 (237)
393 COG4133 CcmA ABC-type transpor 98.6 9.8E-08 2.1E-12 61.5 4.0 43 7-49 16-61 (209)
394 PRK14965 DNA polymerase III su 98.6 3.1E-07 6.7E-12 68.2 7.3 27 17-43 39-65 (576)
395 PRK00279 adk adenylate kinase; 98.6 8.2E-08 1.8E-12 62.9 3.8 32 18-49 2-33 (215)
396 TIGR02769 nickel_nikE nickel i 98.6 5.7E-08 1.2E-12 65.5 3.1 39 6-44 24-65 (265)
397 cd03248 ABCC_TAP TAP, the Tran 98.6 6.8E-08 1.5E-12 63.6 3.4 39 7-45 28-69 (226)
398 PRK13652 cbiO cobalt transport 98.6 5.8E-08 1.3E-12 65.9 3.2 44 2-45 12-59 (277)
399 cd03244 ABCC_MRP_domain2 Domai 98.6 7.5E-08 1.6E-12 63.1 3.6 38 7-44 18-58 (221)
400 cd03298 ABC_ThiQ_thiamine_tran 98.6 5.7E-08 1.2E-12 63.3 3.0 33 13-45 21-53 (211)
401 PRK10418 nikD nickel transport 98.5 6.1E-08 1.3E-12 65.0 3.1 37 6-42 16-55 (254)
402 TIGR00150 HI0065_YjeE ATPase, 98.5 1.3E-07 2.8E-12 57.9 4.3 31 13-43 19-49 (133)
403 cd02023 UMPK Uridine monophosp 98.5 7.1E-07 1.5E-11 57.7 8.0 22 19-40 2-23 (198)
404 PRK15177 Vi polysaccharide exp 98.5 8.1E-08 1.7E-12 63.0 3.6 34 13-46 10-43 (213)
405 COG0542 clpA ATP-binding subun 98.5 9.9E-07 2.1E-11 67.1 9.7 88 17-104 522-709 (786)
406 PRK00411 cdc6 cell division co 98.5 1.1E-06 2.4E-11 62.0 9.6 25 16-40 55-79 (394)
407 PRK10636 putative ABC transpor 98.5 6.1E-08 1.3E-12 72.6 3.3 44 2-45 321-367 (638)
408 PRK13647 cbiO cobalt transport 98.5 6.3E-08 1.4E-12 65.7 3.1 38 6-43 18-58 (274)
409 PRK09825 idnK D-gluconate kina 98.5 1.1E-07 2.4E-12 60.7 4.0 32 16-47 3-34 (176)
410 PRK14258 phosphate ABC transpo 98.5 6.4E-08 1.4E-12 65.2 3.0 41 2-42 16-59 (261)
411 PRK11144 modC molybdate transp 98.5 5.6E-08 1.2E-12 68.2 2.8 42 2-43 9-51 (352)
412 cd02025 PanK Pantothenate kina 98.5 8E-07 1.7E-11 58.7 8.1 23 19-41 2-24 (220)
413 PRK06835 DNA replication prote 98.5 6.9E-08 1.5E-12 67.2 3.2 28 15-42 182-209 (329)
414 PRK08116 hypothetical protein; 98.5 1E-07 2.2E-12 64.7 3.9 26 16-41 114-139 (268)
415 PLN02200 adenylate kinase fami 98.5 1.1E-07 2.3E-12 63.4 4.0 33 16-48 43-75 (234)
416 TIGR03719 ABC_ABC_ChvD ATP-bin 98.5 7.4E-08 1.6E-12 71.0 3.5 42 2-43 13-58 (552)
417 PRK13639 cbiO cobalt transport 98.5 7.4E-08 1.6E-12 65.4 3.2 43 2-44 10-56 (275)
418 PRK10982 galactose/methyl gala 98.5 5.6E-08 1.2E-12 70.7 2.7 44 2-45 7-53 (491)
419 PRK13641 cbiO cobalt transport 98.5 7.5E-08 1.6E-12 65.7 3.2 39 7-45 21-62 (287)
420 TIGR00382 clpX endopeptidase C 98.5 1E-07 2.2E-12 68.1 3.9 32 16-47 116-147 (413)
421 cd03369 ABCC_NFT1 Domain 2 of 98.5 1.1E-07 2.3E-12 61.9 3.7 37 7-43 22-61 (207)
422 cd03238 ABC_UvrA The excision 98.5 1E-07 2.2E-12 61.0 3.6 31 8-38 10-43 (176)
423 PRK06762 hypothetical protein; 98.5 1.3E-07 2.8E-12 59.5 4.0 26 16-41 2-27 (166)
424 PRK14264 phosphate ABC transpo 98.5 7.2E-08 1.6E-12 66.4 3.0 40 2-41 54-96 (305)
425 cd03215 ABC_Carb_Monos_II This 98.5 8.3E-08 1.8E-12 61.4 3.0 32 13-44 23-54 (182)
426 PRK10771 thiQ thiamine transpo 98.5 7.9E-08 1.7E-12 63.6 3.0 33 13-45 22-54 (232)
427 PRK13635 cbiO cobalt transport 98.5 8.9E-08 1.9E-12 65.1 3.2 39 7-45 21-62 (279)
428 TIGR02633 xylG D-xylose ABC tr 98.5 6.3E-08 1.4E-12 70.5 2.6 40 2-41 10-52 (500)
429 PRK14948 DNA polymerase III su 98.5 9.4E-07 2E-11 66.1 8.8 27 17-43 39-65 (620)
430 PRK11147 ABC transporter ATPas 98.5 7.6E-08 1.6E-12 72.0 3.1 43 2-44 328-373 (635)
431 cd00820 PEPCK_HprK Phosphoenol 98.5 1.3E-07 2.8E-12 55.9 3.4 25 13-37 12-36 (107)
432 PRK06921 hypothetical protein; 98.5 1.3E-07 2.7E-12 64.2 3.9 28 15-42 116-143 (266)
433 TIGR02142 modC_ABC molybdenum 98.5 7.5E-08 1.6E-12 67.6 2.8 43 2-44 8-51 (354)
434 PRK08939 primosomal protein Dn 98.5 1.3E-07 2.9E-12 65.2 4.0 29 15-43 155-183 (306)
435 PRK05707 DNA polymerase III su 98.5 1.2E-06 2.5E-11 61.1 8.6 81 17-98 23-176 (328)
436 PRK14955 DNA polymerase III su 98.5 4.1E-07 8.8E-12 64.8 6.5 26 18-43 40-65 (397)
437 PRK13636 cbiO cobalt transport 98.5 9.5E-08 2.1E-12 65.1 3.1 43 2-44 14-60 (283)
438 COG1484 DnaC DNA replication p 98.5 1.3E-07 2.7E-12 63.8 3.7 28 14-41 103-130 (254)
439 PF00005 ABC_tran: ABC transpo 98.5 6.5E-08 1.4E-12 58.8 2.1 30 13-42 8-37 (137)
440 PRK11288 araG L-arabinose tran 98.5 8E-08 1.7E-12 70.0 2.9 42 2-43 13-57 (501)
441 TIGR00554 panK_bact pantothena 98.5 1E-06 2.2E-11 60.5 8.0 27 15-41 61-87 (290)
442 TIGR03415 ABC_choXWV_ATP choli 98.5 9.6E-08 2.1E-12 67.7 3.1 43 2-44 33-78 (382)
443 COG3840 ThiQ ABC-type thiamine 98.5 1.4E-07 3.1E-12 60.7 3.6 47 2-48 10-57 (231)
444 PRK06647 DNA polymerase III su 98.5 1.1E-06 2.4E-11 65.2 8.7 83 17-100 39-191 (563)
445 cd03233 ABC_PDR_domain1 The pl 98.5 1.1E-07 2.4E-12 61.8 3.2 36 6-41 20-58 (202)
446 PF13238 AAA_18: AAA domain; P 98.5 1.3E-07 2.8E-12 56.6 3.2 22 19-40 1-22 (129)
447 PRK13634 cbiO cobalt transport 98.5 9.6E-08 2.1E-12 65.3 3.0 37 7-43 21-60 (290)
448 PRK13650 cbiO cobalt transport 98.5 1.2E-07 2.5E-12 64.6 3.3 38 8-45 22-62 (279)
449 TIGR03263 guanyl_kin guanylate 98.5 1.3E-07 2.9E-12 60.0 3.4 27 16-42 1-27 (180)
450 PRK00300 gmk guanylate kinase; 98.5 1.7E-07 3.8E-12 60.7 4.0 28 14-41 3-30 (205)
451 PF03215 Rad17: Rad17 cell cyc 98.5 1.5E-07 3.2E-12 69.0 4.0 31 16-46 45-75 (519)
452 TIGR01277 thiQ thiamine ABC tr 98.5 1.2E-07 2.7E-12 61.9 3.2 33 13-45 21-53 (213)
453 COG1122 CbiO ABC-type cobalt t 98.5 1.2E-07 2.7E-12 63.2 3.3 44 3-46 13-60 (235)
454 PRK11819 putative ABC transpor 98.5 9.4E-08 2E-12 70.5 3.0 43 2-44 333-378 (556)
455 PRK06305 DNA polymerase III su 98.5 1.3E-06 2.7E-11 63.3 8.6 44 56-100 150-193 (451)
456 PF13555 AAA_29: P-loop contai 98.5 2.8E-07 6E-12 49.3 4.0 26 16-41 23-48 (62)
457 PRK10938 putative molybdenum t 98.5 9.4E-08 2E-12 69.4 2.9 39 2-40 269-310 (490)
458 cd03299 ABC_ModC_like Archeal 98.5 1.2E-07 2.7E-12 62.8 3.2 38 8-45 14-54 (235)
459 TIGR03719 ABC_ABC_ChvD ATP-bin 98.5 8.9E-08 1.9E-12 70.6 2.7 42 2-43 331-375 (552)
460 PHA00729 NTP-binding motif con 98.5 1.5E-07 3.3E-12 62.3 3.5 24 18-41 19-42 (226)
461 PRK11176 lipid transporter ATP 98.5 1.6E-07 3.5E-12 69.4 4.1 41 6-46 356-399 (582)
462 COG0606 Predicted ATPase with 98.5 1.3E-07 2.8E-12 68.1 3.4 27 15-41 197-223 (490)
463 cd03283 ABC_MutS-like MutS-lik 98.5 2.2E-07 4.7E-12 60.5 4.2 33 8-40 16-49 (199)
464 COG4525 TauB ABC-type taurine 98.5 1.8E-07 3.9E-12 61.0 3.7 44 3-46 13-61 (259)
465 cd03272 ABC_SMC3_euk Eukaryoti 98.5 2.5E-07 5.4E-12 61.4 4.6 39 1-41 10-48 (243)
466 cd03288 ABCC_SUR2 The SUR doma 98.5 1.5E-07 3.3E-12 63.2 3.5 38 7-44 35-75 (257)
467 PRK10070 glycine betaine trans 98.5 1.2E-07 2.6E-12 67.6 3.2 43 3-45 38-83 (400)
468 cd03234 ABCG_White The White s 98.5 1.7E-07 3.6E-12 61.8 3.7 35 7-41 21-58 (226)
469 PRK13651 cobalt transporter AT 98.5 1.3E-07 2.7E-12 65.3 3.2 37 8-44 22-61 (305)
470 PRK13646 cbiO cobalt transport 98.5 1.3E-07 2.9E-12 64.5 3.3 39 7-45 21-62 (286)
471 TIGR02173 cyt_kin_arch cytidyl 98.5 1.8E-07 3.9E-12 58.7 3.7 31 18-48 2-32 (171)
472 TIGR02770 nickel_nikD nickel i 98.5 1.6E-07 3.4E-12 62.1 3.5 30 13-42 9-38 (230)
473 PHA02530 pseT polynucleotide k 98.5 1.6E-07 3.5E-12 64.2 3.6 33 16-48 2-35 (300)
474 PF00406 ADK: Adenylate kinase 98.5 1E-07 2.2E-12 59.2 2.4 29 21-49 1-29 (151)
475 KOG3347|consensus 98.5 1.6E-07 3.5E-12 58.5 3.2 34 16-49 7-40 (176)
476 PRK12402 replication factor C 98.5 1.4E-07 3E-12 65.1 3.3 25 18-42 38-62 (337)
477 PRK13409 putative ATPase RIL; 98.5 1.5E-07 3.2E-12 70.0 3.7 47 1-47 81-130 (590)
478 PRK13640 cbiO cobalt transport 98.5 1.2E-07 2.7E-12 64.5 3.0 36 7-42 21-59 (282)
479 PRK04182 cytidylate kinase; Pr 98.5 2.1E-07 4.5E-12 58.9 3.9 30 18-47 2-31 (180)
480 PRK05541 adenylylsulfate kinas 98.5 2.3E-07 5E-12 58.9 4.1 29 13-41 4-32 (176)
481 COG4559 ABC-type hemin transpo 98.5 1.8E-07 3.8E-12 61.6 3.5 44 5-48 13-59 (259)
482 PRK13637 cbiO cobalt transport 98.5 1.5E-07 3.3E-12 64.3 3.4 38 7-44 21-61 (287)
483 COG2812 DnaX DNA polymerase II 98.5 8.6E-07 1.9E-11 64.8 7.4 83 18-101 40-192 (515)
484 PRK13633 cobalt transporter AT 98.5 1.5E-07 3.3E-12 64.0 3.3 39 7-45 24-65 (280)
485 PLN03073 ABC transporter F fam 98.5 1.2E-07 2.6E-12 71.9 3.0 39 1-39 185-226 (718)
486 PRK08154 anaerobic benzoate ca 98.5 2E-07 4.4E-12 64.4 3.9 37 13-49 130-166 (309)
487 PRK13631 cbiO cobalt transport 98.5 1.5E-07 3.3E-12 65.2 3.3 39 7-45 40-81 (320)
488 cd02019 NK Nucleoside/nucleoti 98.4 2.5E-07 5.5E-12 50.4 3.5 22 19-40 2-23 (69)
489 PF00910 RNA_helicase: RNA hel 98.4 1.7E-07 3.7E-12 55.2 3.0 26 19-44 1-26 (107)
490 PRK15093 antimicrobial peptide 98.4 1.2E-07 2.7E-12 65.9 2.7 35 7-41 21-58 (330)
491 PRK13643 cbiO cobalt transport 98.4 1.5E-07 3.2E-12 64.4 3.0 38 8-45 21-61 (288)
492 cd01130 VirB11-like_ATPase Typ 98.4 1.4E-07 3E-12 60.6 2.7 34 9-42 18-51 (186)
493 TIGR02982 heterocyst_DevA ABC 98.4 1.6E-07 3.5E-12 61.6 3.1 36 7-42 19-57 (220)
494 PLN03211 ABC transporter G-25; 98.4 1.7E-07 3.6E-12 70.6 3.5 40 2-41 77-119 (659)
495 COG0396 sufC Cysteine desulfur 98.4 6.2E-07 1.4E-11 59.4 5.7 71 7-88 18-91 (251)
496 PLN02165 adenylate isopentenyl 98.4 2.8E-07 6.1E-12 64.1 4.3 35 15-49 42-76 (334)
497 COG2274 SunT ABC-type bacterio 98.4 2.1E-07 4.5E-12 70.4 3.8 45 2-46 480-529 (709)
498 cd03237 ABC_RNaseL_inhibitor_d 98.4 2.2E-07 4.9E-12 62.2 3.6 34 13-46 22-55 (246)
499 cd03289 ABCC_CFTR2 The CFTR su 98.4 2.1E-07 4.7E-12 63.3 3.5 36 6-41 17-55 (275)
500 PF06068 TIP49: TIP49 C-termin 98.4 2.1E-07 4.5E-12 65.5 3.4 35 15-49 49-85 (398)
No 1
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=9.9e-22 Score=135.03 Aligned_cols=91 Identities=32% Similarity=0.361 Sum_probs=82.3
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-------------------------------------------
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA------------------------------------------- 49 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~------------------------------------------- 49 (105)
+.++++++||||||+|||.||+++|++.++.|+.+..
T Consensus 182 I~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~ 261 (406)
T COG1222 182 IDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRF 261 (406)
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccc
Confidence 7889999999999999999999999999999998776
Q ss_pred ---------------------eeecccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHHHHHHh
Q psy4924 50 ---------------------IFFKKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSSCVEEL 103 (105)
Q Consensus 50 ---------------------~~~~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~~~~~l 103 (105)
-.++...++-++++||+++.+|+|++| |||..+.++.|+.+.+.+||+-+.++.
T Consensus 262 d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM 338 (406)
T COG1222 262 DSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKM 338 (406)
T ss_pred cCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhc
Confidence 035666789999999999999999998 999999999999999999998876543
No 2
>KOG0744|consensus
Probab=99.84 E-value=3.8e-21 Score=131.02 Aligned_cols=103 Identities=63% Similarity=1.022 Sum_probs=91.7
Q ss_pred CcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce---------------------------------
Q psy4924 3 FSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA--------------------------------- 49 (105)
Q Consensus 3 ~~~~~~~~~~~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~--------------------------------- 49 (105)
|....+..+++.+.+.++++||||+|||+|++++|..+..+..+.+.
T Consensus 164 fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~E 243 (423)
T KOG0744|consen 164 FSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQE 243 (423)
T ss_pred HHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHH
Confidence 34566778889999999999999999999999999999887655444
Q ss_pred ----------------------------------------------eeecccCCEEEEEeeCCCCCCCHHhhcccceEEE
Q psy4924 50 ----------------------------------------------IFFKKYPNVLIFTTSNLTGAIDLAFLDRADIKQY 83 (105)
Q Consensus 50 ----------------------------------------------~~~~~~~~~~~~~~~n~~~~~d~~~~~r~~~~~~ 83 (105)
-.+...+++.+++|+|..+.+|.|+.||.|+..+
T Consensus 244 Lv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVDRADi~~y 323 (423)
T KOG0744|consen 244 LVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVDRADIVFY 323 (423)
T ss_pred HHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhhHhhheee
Confidence 1567789999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHHHHhhC
Q psy4924 84 IGFPSAAAIFNIFSSCVEELKR 105 (105)
Q Consensus 84 ~~~~~~~~~~~i~~~~~~~l~~ 105 (105)
+++|+..++++|++.++++|.+
T Consensus 324 VG~Pt~~ai~~IlkscieEL~~ 345 (423)
T KOG0744|consen 324 VGPPTAEAIYEILKSCIEELIS 345 (423)
T ss_pred cCCccHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999863
No 3
>KOG0733|consensus
Probab=99.84 E-value=1.4e-20 Score=136.37 Aligned_cols=91 Identities=35% Similarity=0.460 Sum_probs=81.2
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-------------------------------------------
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA------------------------------------------- 49 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~------------------------------------------- 49 (105)
+.++++++|+||||||||.||+++|++++.|++.+..
T Consensus 220 v~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe 299 (802)
T KOG0733|consen 220 VRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKRE 299 (802)
T ss_pred CCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchh
Confidence 7789999999999999999999999999999998886
Q ss_pred --------------------eeec--ccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHHHHHHh
Q psy4924 50 --------------------IFFK--KYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSSCVEEL 103 (105)
Q Consensus 50 --------------------~~~~--~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~~~~~l 103 (105)
+... .+.+|+||++||+|+.+|+++.| |||..|.++.|++.++.+|+....+.|
T Consensus 300 ~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~l 377 (802)
T KOG0733|consen 300 EAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGL 377 (802)
T ss_pred hHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhC
Confidence 0111 24779999999999999999988 999999999999999999999887754
No 4
>KOG0730|consensus
Probab=99.82 E-value=4.6e-20 Score=134.17 Aligned_cols=91 Identities=34% Similarity=0.514 Sum_probs=82.2
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-------------------------------------------
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA------------------------------------------- 49 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~------------------------------------------- 49 (105)
+.++++|++|||||||||++|+++|++.+++|+.+..
T Consensus 465 i~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~ 544 (693)
T KOG0730|consen 465 ISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRG 544 (693)
T ss_pred CCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccC
Confidence 6789999999999999999999999999999998765
Q ss_pred ------------------eeecccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHHHHHHh
Q psy4924 50 ------------------IFFKKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSSCVEEL 103 (105)
Q Consensus 50 ------------------~~~~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~~~~~l 103 (105)
--++...+++++++||+++.+|+|++| |+|..++++.|+.+.+.+|++...+++
T Consensus 545 g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkm 618 (693)
T KOG0730|consen 545 GSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKM 618 (693)
T ss_pred CCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcC
Confidence 024455689999999999999999999 999999999999999999999987653
No 5
>KOG0738|consensus
Probab=99.81 E-value=7.1e-20 Score=127.17 Aligned_cols=93 Identities=29% Similarity=0.360 Sum_probs=80.2
Q ss_pred cccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce----------------------------------------
Q psy4924 10 SNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA---------------------------------------- 49 (105)
Q Consensus 10 ~~~~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~---------------------------------------- 49 (105)
+.+..+=++++++||||+|||.||+++|.+.+..|++++.
T Consensus 239 ~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs 318 (491)
T KOG0738|consen 239 KGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCS 318 (491)
T ss_pred hhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHh
Confidence 3344455789999999999999999999999999998886
Q ss_pred --------------------------eeecccCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 50 --------------------------IFFKKYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 50 --------------------------~~~~~~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
-.++....|+|+++||.|+++|.|++|||+..++++.|+.+++..+++..+..
T Consensus 319 ~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~ 397 (491)
T KOG0738|consen 319 QRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRS 397 (491)
T ss_pred cCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhcc
Confidence 02333345899999999999999999999999999999999999999988754
No 6
>KOG0733|consensus
Probab=99.79 E-value=6.5e-19 Score=127.82 Aligned_cols=89 Identities=33% Similarity=0.446 Sum_probs=80.3
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-------------------------------------------
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA------------------------------------------- 49 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~------------------------------------------- 49 (105)
+..+.+++||||||||||.||+++|++.+.+|+.+..
T Consensus 542 i~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~ 621 (802)
T KOG0733|consen 542 IDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRS 621 (802)
T ss_pred CCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccC
Confidence 5668899999999999999999999999999988775
Q ss_pred ------------------eeecccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 50 ------------------IFFKKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 50 ------------------~~~~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
-.++...+|.++++||+|+.+|+|++| |+|...+++.|+.+++..|++...+
T Consensus 622 ~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 622 DEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITK 693 (802)
T ss_pred CCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhc
Confidence 034555789999999999999999998 9999999999999999999998776
No 7
>KOG0734|consensus
Probab=99.78 E-value=2.5e-19 Score=128.56 Aligned_cols=89 Identities=28% Similarity=0.417 Sum_probs=81.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce---------------------------------------------
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA--------------------------------------------- 49 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~--------------------------------------------- 49 (105)
-+++|+|+||||+|||.|||++|.+.+.||+..+.
T Consensus 336 LPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~ 415 (752)
T KOG0734|consen 336 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPS 415 (752)
T ss_pred CCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCcc
Confidence 37899999999999999999999999999988765
Q ss_pred ----------------eeecccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHHHHHHh
Q psy4924 50 ----------------IFFKKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSSCVEEL 103 (105)
Q Consensus 50 ----------------~~~~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~~~~~l 103 (105)
-.+..+++++++++||+++.+|.|+.| |||.++.++.|+...+.+|++.+++++
T Consensus 416 ~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki 487 (752)
T KOG0734|consen 416 DQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKI 487 (752)
T ss_pred HHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcC
Confidence 145777899999999999999999998 999999999999999999999998765
No 8
>KOG0737|consensus
Probab=99.78 E-value=6.5e-19 Score=121.42 Aligned_cols=91 Identities=27% Similarity=0.397 Sum_probs=80.6
Q ss_pred ccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-----------------------------------------
Q psy4924 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA----------------------------------------- 49 (105)
Q Consensus 11 ~~~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~----------------------------------------- 49 (105)
.++.++++++|+||||+|||.+|+++|++.+++++.+..
T Consensus 122 ~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~ 201 (386)
T KOG0737|consen 122 KLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQ 201 (386)
T ss_pred ccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhh
Confidence 346688999999999999999999999999999998876
Q ss_pred ----------------------eeecccCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 50 ----------------------IFFKKYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 50 ----------------------~~~~~~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
+.-+....++|+++||+|.++|.|++||+...++++.|+.+++..|++-.++
T Consensus 202 R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk 275 (386)
T KOG0737|consen 202 RRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILK 275 (386)
T ss_pred cccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhc
Confidence 1234445699999999999999999999999999999999999999988764
No 9
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.78 E-value=1.7e-18 Score=124.82 Aligned_cols=91 Identities=26% Similarity=0.383 Sum_probs=78.4
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-----------------------------e-------------
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA-----------------------------I------------- 50 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~-----------------------------~------------- 50 (105)
+..+++++|+||||||||++|+++|++.+.+++.++. +
T Consensus 256 l~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~ 335 (489)
T CHL00195 256 LPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSE 335 (489)
T ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhcccc
Confidence 4568899999999999999999999999999877653 0
Q ss_pred -----------------ee-cccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHHHHHHh
Q psy4924 51 -----------------FF-KKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSSCVEEL 103 (105)
Q Consensus 51 -----------------~~-~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~~~~~l 103 (105)
.+ ....++++++|||+++.+|+++++ |||..++++.|+.+++..||+.++.+.
T Consensus 336 ~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~ 408 (489)
T CHL00195 336 SKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKF 408 (489)
T ss_pred CCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhc
Confidence 01 123568899999999999999988 999999999999999999999988753
No 10
>KOG0731|consensus
Probab=99.77 E-value=6.1e-19 Score=130.82 Aligned_cols=90 Identities=29% Similarity=0.401 Sum_probs=80.3
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce--------------------------------------------
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA-------------------------------------------- 49 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~-------------------------------------------- 49 (105)
..+++++|+||||||||.||+++|.+.+.||+.++.
T Consensus 342 KiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G 421 (774)
T KOG0731|consen 342 KIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGG 421 (774)
T ss_pred cCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHhhccCCeEEEecccccccccccc
Confidence 348999999999999999999999999999998886
Q ss_pred ---------------------eeecccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHHHHHHh
Q psy4924 50 ---------------------IFFKKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSSCVEEL 103 (105)
Q Consensus 50 ---------------------~~~~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~~~~~l 103 (105)
--+.....|+++++||+++.+|+|++| |||.++.++.|+...+.+|++.+++++
T Consensus 422 ~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~ 498 (774)
T KOG0731|consen 422 KGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKK 498 (774)
T ss_pred cccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhcc
Confidence 023344679999999999999999998 999999999999999999999988654
No 11
>KOG0743|consensus
Probab=99.77 E-value=1.2e-18 Score=122.73 Aligned_cols=93 Identities=30% Similarity=0.431 Sum_probs=79.7
Q ss_pred ccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce---------------------------------------
Q psy4924 9 KSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA--------------------------------------- 49 (105)
Q Consensus 9 ~~~~~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~--------------------------------------- 49 (105)
.+.-.+|.|+++||||||||||+++.|+|+.++-.++++..
T Consensus 228 krvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dLr~LL~~t~~kSIivIEDIDcs~~l~~~~~~ 307 (457)
T KOG0743|consen 228 KRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDLRHLLLATPNKSILLIEDIDCSFDLRERRKK 307 (457)
T ss_pred HhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHHHHHHHhCCCCcEEEEeeccccccccccccc
Confidence 33337889999999999999999999999999998887765
Q ss_pred -----------------------eeecccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 50 -----------------------IFFKKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 50 -----------------------~~~~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
+..+.+..-+++.|||+.+.+|+|++| |.|+++++++.+.++...++++++.
T Consensus 308 ~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~ 384 (457)
T KOG0743|consen 308 KKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLG 384 (457)
T ss_pred ccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcC
Confidence 122333456789999999999999999 9999999999999999999988864
No 12
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.77 E-value=1.3e-18 Score=116.12 Aligned_cols=88 Identities=26% Similarity=0.363 Sum_probs=80.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCccccce----------------------------------------------
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA---------------------------------------------- 49 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~---------------------------------------------- 49 (105)
++.+++|||||+|||++|+++|++.+.|++.+..
T Consensus 151 PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQe 230 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQE 230 (368)
T ss_pred cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHH
Confidence 6789999999999999999999999999987765
Q ss_pred ----------------eeecccCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHHHh
Q psy4924 50 ----------------IFFKKYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEEL 103 (105)
Q Consensus 50 ----------------~~~~~~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~~l 103 (105)
-.+.++.++..|++||+++.+|+++.+||+-.+.+..|+.+++.+|+..+.+.+
T Consensus 231 lRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~ 300 (368)
T COG1223 231 LRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKF 300 (368)
T ss_pred hcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhC
Confidence 146788899999999999999999999999999999999999999999887653
No 13
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.73 E-value=3e-17 Score=116.02 Aligned_cols=90 Identities=36% Similarity=0.427 Sum_probs=75.7
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-----------------------------e-------------
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA-----------------------------I------------- 50 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~-----------------------------~------------- 50 (105)
+.++++++|+||||||||++++++|++++.+++.+.. +
T Consensus 176 l~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~ 255 (398)
T PTZ00454 176 IDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRF 255 (398)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccc
Confidence 5678999999999999999999999999988765432 0
Q ss_pred ----------------------eecccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 51 ----------------------FFKKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 51 ----------------------~~~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
.+....++.++++||+++.+|+++++ ||+..+.++.|+.+++..||+.+..+
T Consensus 256 ~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~ 331 (398)
T PTZ00454 256 DAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSK 331 (398)
T ss_pred cccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhc
Confidence 01123467899999999999999998 99999999999999999999887654
No 14
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.72 E-value=2.8e-17 Score=118.78 Aligned_cols=90 Identities=38% Similarity=0.508 Sum_probs=73.3
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc----------cccce---------------------------------
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL----------QTPQA--------------------------------- 49 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~----------~~~~~--------------------------------- 49 (105)
+.++++++||||||||||++++++|++++.+. ..+..
T Consensus 213 l~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~I 292 (512)
T TIGR03689 213 LKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVI 292 (512)
T ss_pred CCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCce
Confidence 56688999999999999999999999986541 11110
Q ss_pred e---------------------------------eecccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHH
Q psy4924 50 I---------------------------------FFKKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFN 94 (105)
Q Consensus 50 ~---------------------------------~~~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~ 94 (105)
+ .+...++++++++||+++.+|++++| |||..++++.|+.+++..
T Consensus 293 IfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~ 372 (512)
T TIGR03689 293 VFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAAD 372 (512)
T ss_pred EEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHH
Confidence 0 11222568899999999999999998 999999999999999999
Q ss_pred HHHHHHHH
Q psy4924 95 IFSSCVEE 102 (105)
Q Consensus 95 i~~~~~~~ 102 (105)
|++.++.+
T Consensus 373 Il~~~l~~ 380 (512)
T TIGR03689 373 IFSKYLTD 380 (512)
T ss_pred HHHHHhhc
Confidence 99988753
No 15
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=3.1e-17 Score=118.61 Aligned_cols=89 Identities=34% Similarity=0.439 Sum_probs=80.5
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-------------------------------------------
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA------------------------------------------- 49 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~------------------------------------------- 49 (105)
+.++++++|+||||||||.+|+++|.+.+.+++.+..
T Consensus 273 ~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~ 352 (494)
T COG0464 273 LRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRG 352 (494)
T ss_pred CCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCC
Confidence 5667899999999999999999999999999987765
Q ss_pred ------------------eeecccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 50 ------------------IFFKKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 50 ------------------~~~~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
..++...+++++++||+++.+|+++++ ||+..++++.|+.+++..+++.++.
T Consensus 353 ~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 353 PSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred CCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 025666789999999999999999999 9999999999999999999998876
No 16
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.72 E-value=3.7e-17 Score=122.85 Aligned_cols=90 Identities=33% Similarity=0.413 Sum_probs=76.8
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-----------------------------e-------------
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA-----------------------------I------------- 50 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~-----------------------------~------------- 50 (105)
+.++++++|+||||||||++|+++|.+.+.+++.+.. +
T Consensus 484 ~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~ 563 (733)
T TIGR01243 484 IRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARG 563 (733)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCC
Confidence 4567889999999999999999999999998876543 0
Q ss_pred --------------------eecccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 51 --------------------FFKKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 51 --------------------~~~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
.+....+++++++||+++.+|+++++ ||+..++++.|+.+++..||+.+..+
T Consensus 564 ~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~ 637 (733)
T TIGR01243 564 ARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRS 637 (733)
T ss_pred CCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcC
Confidence 11234578999999999999999998 99999999999999999999876543
No 17
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.71 E-value=7e-17 Score=116.89 Aligned_cols=90 Identities=30% Similarity=0.416 Sum_probs=75.9
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-----------------------------e-------------
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA-----------------------------I------------- 50 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~-----------------------------~------------- 50 (105)
...+++++|+||||||||++++++|++.+.+++.++. +
T Consensus 85 ~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~ 164 (495)
T TIGR01241 85 AKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRG 164 (495)
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccc
Confidence 3457789999999999999999999999999876542 0
Q ss_pred ----------------------eecccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 51 ----------------------FFKKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 51 ----------------------~~~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
.+....+++++++||+++.+|+++++ ||+..+.++.|+.+++.+|++.++.+
T Consensus 165 ~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~ 240 (495)
T TIGR01241 165 AGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKN 240 (495)
T ss_pred cCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhc
Confidence 01123457899999999999999997 89999999999999999999988754
No 18
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.71 E-value=7.9e-17 Score=113.71 Aligned_cols=90 Identities=33% Similarity=0.390 Sum_probs=75.5
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-----------------------------e-------------
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA-----------------------------I------------- 50 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~-----------------------------~------------- 50 (105)
+.++++++|+||||||||++|+++|++++.+++.+.. +
T Consensus 162 ~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~ 241 (389)
T PRK03992 162 IEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRT 241 (389)
T ss_pred CCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccc
Confidence 4668899999999999999999999999988765432 0
Q ss_pred ----------------------eecccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 51 ----------------------FFKKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 51 ----------------------~~~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
.+....++.++++||+++.+|+++++ ||+..+.++.|+.+++..|+..+..+
T Consensus 242 ~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~ 317 (389)
T PRK03992 242 DSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRK 317 (389)
T ss_pred cCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhcc
Confidence 01122468899999999999999997 99999999999999999999987654
No 19
>KOG0740|consensus
Probab=99.70 E-value=3.3e-17 Score=115.57 Aligned_cols=95 Identities=27% Similarity=0.276 Sum_probs=84.2
Q ss_pred cccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce--------------------------------------
Q psy4924 8 VKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA-------------------------------------- 49 (105)
Q Consensus 8 ~~~~~~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~-------------------------------------- 49 (105)
++..+-++.++++|+||||+|||.|++++|.+.+..+.+++.
T Consensus 178 ~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidsl 257 (428)
T KOG0740|consen 178 LFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSL 257 (428)
T ss_pred hhhccccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHH
Confidence 444456678899999999999999999999999999998876
Q ss_pred -------------------------eeecccCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 50 -------------------------IFFKKYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 50 -------------------------~~~~~~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
......++++++++||+|+.+|.++.+||...++++.|+.+.+..+|+..+.+
T Consensus 258 ls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~ 335 (428)
T KOG0740|consen 258 LSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKE 335 (428)
T ss_pred HhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHh
Confidence 14455578999999999999999999999999999999999999999998865
No 20
>KOG0727|consensus
Probab=99.69 E-value=7.2e-17 Score=107.81 Aligned_cols=90 Identities=34% Similarity=0.399 Sum_probs=78.1
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-------------------------------------------
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA------------------------------------------- 49 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~------------------------------------------- 49 (105)
+.+++++++|||||||||.|++++|++....|+.+..
T Consensus 186 idpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakenapsiifideidaiatkrf 265 (408)
T KOG0727|consen 186 IDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRF 265 (408)
T ss_pred CCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhc
Confidence 7789999999999999999999999999999887665
Q ss_pred ---------------------eeecccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 50 ---------------------IFFKKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 50 ---------------------~~~~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
-.+....++-++++||+.+.+|+++++ |.|..+.+++|+..+.+-+|+-..++
T Consensus 266 daqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titsk 341 (408)
T KOG0727|consen 266 DAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSK 341 (408)
T ss_pred cccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhc
Confidence 034556788999999999999999998 89999999999988888777765543
No 21
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.68 E-value=2.1e-16 Score=110.11 Aligned_cols=88 Identities=19% Similarity=0.261 Sum_probs=74.7
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-------------------------------------------
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA------------------------------------------- 49 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~------------------------------------------- 49 (105)
+..+++++||||||||||.+++++|++++.+++.++.
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~ 224 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAG 224 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhc
Confidence 5678999999999999999999999999999987775
Q ss_pred ---------------e-----e---------e-------cccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHH
Q psy4924 50 ---------------I-----F---------F-------KKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAA 91 (105)
Q Consensus 50 ---------------~-----~---------~-------~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~ 91 (105)
+ . + +....+.+++|||+++.+|++++| |||..+ ..|+.++
T Consensus 225 ~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~ 302 (413)
T PLN00020 225 AGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTRED 302 (413)
T ss_pred CCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHH
Confidence 0 0 0 234668999999999999999999 999865 5899999
Q ss_pred HHHHHHHHHHH
Q psy4924 92 IFNIFSSCVEE 102 (105)
Q Consensus 92 ~~~i~~~~~~~ 102 (105)
+.+|+..+++.
T Consensus 303 R~eIL~~~~r~ 313 (413)
T PLN00020 303 RIGVVHGIFRD 313 (413)
T ss_pred HHHHHHHHhcc
Confidence 99999877643
No 22
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.68 E-value=2.2e-16 Score=112.65 Aligned_cols=90 Identities=31% Similarity=0.373 Sum_probs=75.5
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-----------------------------e-------------
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA-----------------------------I------------- 50 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~-----------------------------~------------- 50 (105)
+.++++++|+||||||||++|+++|++++.+++.+.. +
T Consensus 214 i~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~ 293 (438)
T PTZ00361 214 IKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRY 293 (438)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCC
Confidence 5578899999999999999999999999988765432 0
Q ss_pred ----------------------eecccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 51 ----------------------FFKKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 51 ----------------------~~~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
.+....++.++++||+++.+|+++++ ||+..+.++.|+.+++..|++.+..+
T Consensus 294 ~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 294 DATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred CCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 00123467899999999999999987 99999999999999999999987654
No 23
>KOG0739|consensus
Probab=99.67 E-value=7.5e-17 Score=109.54 Aligned_cols=85 Identities=32% Similarity=0.447 Sum_probs=73.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCccccce----------------------------------------------
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA---------------------------------------------- 49 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~---------------------------------------------- 49 (105)
=++++||||||+|||.||+++|.+.+..|+.++.
T Consensus 166 wrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enE 245 (439)
T KOG0739|consen 166 WRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENE 245 (439)
T ss_pred ceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCc
Confidence 3579999999999999999999999999988775
Q ss_pred ------------e----eecccCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHH
Q psy4924 50 ------------I----FFKKYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCV 100 (105)
Q Consensus 50 ------------~----~~~~~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~ 100 (105)
+ .-.....+.++++||.|+.+|.|+.|||+..|+++.|...++.++|+-++
T Consensus 246 seasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhl 312 (439)
T KOG0739|consen 246 SEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHL 312 (439)
T ss_pred hHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheecc
Confidence 0 11334678999999999999999999999999999999999988887654
No 24
>KOG0652|consensus
Probab=99.66 E-value=3.2e-16 Score=105.15 Aligned_cols=90 Identities=28% Similarity=0.323 Sum_probs=78.3
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-------------------------------------------
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA------------------------------------------- 49 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~------------------------------------------- 49 (105)
+.+++++++|||||+|||.+|++.|.+.+..|..+..
T Consensus 202 i~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRf 281 (424)
T KOG0652|consen 202 IRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRF 281 (424)
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccc
Confidence 7789999999999999999999999999988866554
Q ss_pred ---------------------eeecccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 50 ---------------------IFFKKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 50 ---------------------~~~~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
-.++....+-++++||+.+.+|+++++ |.|..+.++.|..+++.+|+.-+-.+
T Consensus 282 DSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRK 357 (424)
T KOG0652|consen 282 DSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRK 357 (424)
T ss_pred cccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhh
Confidence 145667889999999999999999998 89999999999999998888765443
No 25
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.66 E-value=9.1e-16 Score=107.43 Aligned_cols=90 Identities=32% Similarity=0.384 Sum_probs=74.6
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-----------------------------e-------------
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA-----------------------------I------------- 50 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~-----------------------------~------------- 50 (105)
+.++++++|+||||||||++++++|++++.+++.+.. +
T Consensus 153 ~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~ 232 (364)
T TIGR01242 153 IEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRT 232 (364)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccc
Confidence 4557889999999999999999999999988765442 0
Q ss_pred ----------------------eecccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 51 ----------------------FFKKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 51 ----------------------~~~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
.+....++.++++||+++.+|+++++ ||+..+.++.|+.+++..|+..+..+
T Consensus 233 ~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~ 308 (364)
T TIGR01242 233 DSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRK 308 (364)
T ss_pred cCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhc
Confidence 01123478899999999999999987 89999999999999999999877643
No 26
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=2.9e-16 Score=114.61 Aligned_cols=86 Identities=30% Similarity=0.429 Sum_probs=76.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCccccce----------------------------------------------
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA---------------------------------------------- 49 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~---------------------------------------------- 49 (105)
+++++|+||||+|||.||+++|.+.+.|++.++.
T Consensus 183 PkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~ 262 (596)
T COG0465 183 PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGL 262 (596)
T ss_pred ccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCC
Confidence 7899999999999999999999999999988876
Q ss_pred ---------------e---eecccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 50 ---------------I---FFKKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 50 ---------------~---~~~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
+ .+..+..++++++||+++.+|+|++| |||.++.++.|+...+.+|++-+.+
T Consensus 263 GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~ 334 (596)
T COG0465 263 GGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAK 334 (596)
T ss_pred CCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhh
Confidence 0 23444689999999999999999998 9999999999999999999986654
No 27
>KOG0736|consensus
Probab=99.65 E-value=7.9e-16 Score=114.12 Aligned_cols=90 Identities=29% Similarity=0.414 Sum_probs=73.6
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-------------------------------------------
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA------------------------------------------- 49 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~------------------------------------------- 49 (105)
+.+..+++||||||+|||.+|+++|.+....|..+..
T Consensus 702 lrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG 781 (953)
T KOG0736|consen 702 LRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRG 781 (953)
T ss_pred ccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCC
Confidence 3345689999999999999999999999999987765
Q ss_pred --------------------eeec--ccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCC-CHHHHHHHHHHHHHH
Q psy4924 50 --------------------IFFK--KYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFP-SAAAIFNIFSSCVEE 102 (105)
Q Consensus 50 --------------------~~~~--~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~-~~~~~~~i~~~~~~~ 102 (105)
-.++ ....++++++||+|+.+|++++| |||.-++++.+ +.+....++....++
T Consensus 782 ~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrk 859 (953)
T KOG0736|consen 782 RSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRK 859 (953)
T ss_pred CCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHH
Confidence 0222 55789999999999999999998 99999999999 555666666655443
No 28
>KOG0728|consensus
Probab=99.65 E-value=5.1e-16 Score=103.67 Aligned_cols=89 Identities=31% Similarity=0.379 Sum_probs=79.6
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-------------------------------------------
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA------------------------------------------- 49 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~------------------------------------------- 49 (105)
+..+++++||||||+|||.||+++|.+..|.|+.++.
T Consensus 178 IaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~ 257 (404)
T KOG0728|consen 178 IAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRV 257 (404)
T ss_pred CCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccc
Confidence 7789999999999999999999999999999998876
Q ss_pred ---------------------eeecccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 50 ---------------------IFFKKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 50 ---------------------~~~~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
-.++...++-++++||+.+.+|+|+++ |.|..+.++.|+.+++..|++-+-.
T Consensus 258 e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsr 332 (404)
T KOG0728|consen 258 ESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSR 332 (404)
T ss_pred cCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhh
Confidence 135666788899999999999999998 8999999999999999999876644
No 29
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.64 E-value=1e-15 Score=100.49 Aligned_cols=85 Identities=24% Similarity=0.423 Sum_probs=63.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCccccce----------------------------------------------
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA---------------------------------------------- 49 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~---------------------------------------------- 49 (105)
-..++||||||+||||||+.+|++++.++...+.
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~ 129 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAAILTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGK 129 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHHHHHT--TT-EEEECTCCC--HHHHHHHHHHHHCSE
T ss_pred cceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHHHHHhcCCCcEEEEechhhccHHHHHHHHHHhccCe
Confidence 3479999999999999999999999998865554
Q ss_pred e--eec----------ccCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHH
Q psy4924 50 I--FFK----------KYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCV 100 (105)
Q Consensus 50 ~--~~~----------~~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~ 100 (105)
+ .+. .-+++.++++|.+...+..++.+||.+...+++-+.+++..|+++..
T Consensus 130 idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a 192 (233)
T PF05496_consen 130 IDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSA 192 (233)
T ss_dssp EEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCC
T ss_pred EEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHH
Confidence 0 111 11567899999999999999999999999999999999999998754
No 30
>CHL00176 ftsH cell division protein; Validated
Probab=99.64 E-value=1.4e-15 Score=112.63 Aligned_cols=89 Identities=29% Similarity=0.450 Sum_probs=75.4
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-----------------------------e--------------
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA-----------------------------I-------------- 50 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~-----------------------------~-------------- 50 (105)
..+++++|+||||||||++|+++|.+.+.+++.++. +
T Consensus 214 ~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~ 293 (638)
T CHL00176 214 KIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGA 293 (638)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccC
Confidence 346789999999999999999999999998876542 0
Q ss_pred ---------------------eecccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 51 ---------------------FFKKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 51 ---------------------~~~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
.+....+++++++||+++.+|+++++ ||+..+.++.|+.+++..|++.++++
T Consensus 294 ~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~ 368 (638)
T CHL00176 294 GIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARN 368 (638)
T ss_pred CCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhh
Confidence 01133568899999999999999987 89999999999999999999988764
No 31
>KOG0735|consensus
Probab=99.62 E-value=2.2e-15 Score=111.22 Aligned_cols=91 Identities=27% Similarity=0.391 Sum_probs=78.5
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-------------------------------------------
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA------------------------------------------- 49 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~------------------------------------------- 49 (105)
++...+++||||||||||.||.++|...+..++.+..
T Consensus 698 lr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRG 777 (952)
T KOG0735|consen 698 LRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRG 777 (952)
T ss_pred cccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccC
Confidence 4556789999999999999999999999999988765
Q ss_pred ------------------eeecccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHHHHHHh
Q psy4924 50 ------------------IFFKKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSSCVEEL 103 (105)
Q Consensus 50 ------------------~~~~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~~~~~l 103 (105)
-..+.-.+|.++++|.+|+.+|+|++| |+|..++++.|++.++.+|++..-..+
T Consensus 778 hDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~ 851 (952)
T KOG0735|consen 778 HDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSL 851 (952)
T ss_pred CCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhcc
Confidence 022334678999999999999999998 999999999999999999998776543
No 32
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.61 E-value=3.7e-15 Score=110.79 Aligned_cols=88 Identities=30% Similarity=0.452 Sum_probs=75.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-----------------------------e---------------
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA-----------------------------I--------------- 50 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~-----------------------------~--------------- 50 (105)
.+++++|+||||+|||+++++++++++.+++..+. +
T Consensus 184 ~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~ 263 (644)
T PRK10733 184 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAG 263 (644)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCC
Confidence 35679999999999999999999999998876543 0
Q ss_pred --------------------eecccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 51 --------------------FFKKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 51 --------------------~~~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
.+.....++++++||+++.+|+++++ |||..+.++.|+.+++.+|++.++.+
T Consensus 264 ~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 264 LGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred CCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhc
Confidence 11223568999999999999999997 99999999999999999999998765
No 33
>KOG0742|consensus
Probab=99.60 E-value=3e-15 Score=105.33 Aligned_cols=89 Identities=22% Similarity=0.377 Sum_probs=76.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCccccce----------------------------------------------
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA---------------------------------------------- 49 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~---------------------------------------------- 49 (105)
-+.+++|||||+|||.+|+.||.+.|..+-.+..
T Consensus 384 fRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnkty 463 (630)
T KOG0742|consen 384 FRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTY 463 (630)
T ss_pred hhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhh
Confidence 4679999999999999999999999988765443
Q ss_pred -----------e---eecccCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHHHhh
Q psy4924 50 -----------I---FFKKYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEELK 104 (105)
Q Consensus 50 -----------~---~~~~~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~~l~ 104 (105)
. +=+....++++.+||+|.++|.++-||+|-.+.++.|.+++++.+++.++.+.+
T Consensus 464 mSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi 532 (630)
T KOG0742|consen 464 MSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYI 532 (630)
T ss_pred hcHHHHHHHHHHHHHhcccccceEEEeccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHh
Confidence 0 123345678899999999999999999999999999999999999999998754
No 34
>KOG0729|consensus
Probab=99.60 E-value=4.7e-16 Score=104.62 Aligned_cols=86 Identities=33% Similarity=0.403 Sum_probs=73.9
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-------------------------------------------
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA------------------------------------------- 49 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~------------------------------------------- 49 (105)
+.+++++++|||||+|||.+|+++|+..+..|+.+-.
T Consensus 208 idppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarf 287 (435)
T KOG0729|consen 208 IDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARF 287 (435)
T ss_pred CCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccc
Confidence 7789999999999999999999999999998876543
Q ss_pred ---------------------eeecccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHH
Q psy4924 50 ---------------------IFFKKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSS 98 (105)
Q Consensus 50 ---------------------~~~~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~ 98 (105)
-.+....++-++++||+|+.+|+++++ |.|..+.++.|+.+.+.+|++-
T Consensus 288 ddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~ki 359 (435)
T KOG0729|consen 288 DDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKI 359 (435)
T ss_pred cCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEE
Confidence 034555678899999999999999998 8999999999998877666543
No 35
>KOG0651|consensus
Probab=99.56 E-value=3.1e-15 Score=101.87 Aligned_cols=85 Identities=33% Similarity=0.429 Sum_probs=73.4
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-------------------------------------------
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA------------------------------------------- 49 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~------------------------------------------- 49 (105)
+.++++++||||||+|||.++++++...++.++.+..
T Consensus 163 Ik~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~ 242 (388)
T KOG0651|consen 163 IKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRF 242 (388)
T ss_pred CCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEe
Confidence 6678999999999999999999999999999887665
Q ss_pred ---------------------eeecccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHH
Q psy4924 50 ---------------------IFFKKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFS 97 (105)
Q Consensus 50 ---------------------~~~~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~ 97 (105)
-.++...+|-+|+|+|+++.+|+++++ |.|..++++.|....+..|++
T Consensus 243 se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~K 313 (388)
T KOG0651|consen 243 SEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILK 313 (388)
T ss_pred ccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEe
Confidence 034555778899999999999999998 999999999998887665544
No 36
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.56 E-value=2.2e-14 Score=114.18 Aligned_cols=43 Identities=14% Similarity=0.154 Sum_probs=37.0
Q ss_pred cCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHH
Q psy4924 55 YPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFS 97 (105)
Q Consensus 55 ~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~ 97 (105)
..+++|++|||+|+.+|+|+++ |||..+.++.|+..++..++.
T Consensus 1770 ~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ 1814 (2281)
T CHL00206 1770 TRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFF 1814 (2281)
T ss_pred CCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHH
Confidence 3578999999999999999998 999999999998766665554
No 37
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.55 E-value=2.7e-14 Score=107.58 Aligned_cols=89 Identities=34% Similarity=0.375 Sum_probs=73.9
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-----------------------------e-------------
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA-----------------------------I------------- 50 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~-----------------------------~------------- 50 (105)
+.++++++|+||||||||++++++|++++.+++.++. +
T Consensus 209 i~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~ 288 (733)
T TIGR01243 209 IEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKRE 288 (733)
T ss_pred CCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhccccc
Confidence 4668899999999999999999999999988765442 0
Q ss_pred -------------------eecccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 51 -------------------FFKKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 51 -------------------~~~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
.+.....++++++||.++.+|+++.+ ||+..+.++.|+.+++..|++....
T Consensus 289 ~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~ 360 (733)
T TIGR01243 289 EVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTR 360 (733)
T ss_pred CCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhc
Confidence 11223467889999999999999887 8999999999999999999986554
No 38
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.53 E-value=8.2e-14 Score=93.97 Aligned_cols=86 Identities=27% Similarity=0.417 Sum_probs=73.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce---------------------------------------------
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA--------------------------------------------- 49 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~--------------------------------------------- 49 (105)
.-.+++|+||||.||||||+.+|++++..+...+.
T Consensus 51 ~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~gDlaaiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf 130 (332)
T COG2255 51 ALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPGDLAAILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDF 130 (332)
T ss_pred CcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChhhHHHHHhcCCcCCeEEEehhhhcChhHHHHhhhhhhhe
Confidence 34579999999999999999999999988766554
Q ss_pred --------------eeecccCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 50 --------------IFFKKYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 50 --------------~~~~~~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
+.+.. +++.++++|.+...+...+.+||.+...+++-+.+++.+|+.+.-.
T Consensus 131 ~lDI~IG~gp~Arsv~ldL-ppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~ 195 (332)
T COG2255 131 RLDIIIGKGPAARSIRLDL-PPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAK 195 (332)
T ss_pred eEEEEEccCCccceEeccC-CCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHH
Confidence 01111 6788999999999999999999999999999999999999988764
No 39
>KOG0726|consensus
Probab=99.52 E-value=1.4e-14 Score=98.47 Aligned_cols=86 Identities=31% Similarity=0.352 Sum_probs=73.4
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-------------------------------------------
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA------------------------------------------- 49 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~------------------------------------------- 49 (105)
+.++++++|||+||+|||.||+++|++....|..+..
T Consensus 216 ikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRy 295 (440)
T KOG0726|consen 216 IKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRY 295 (440)
T ss_pred CCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccc
Confidence 6679999999999999999999999999988876554
Q ss_pred ---------------------eeecccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHH
Q psy4924 50 ---------------------IFFKKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSS 98 (105)
Q Consensus 50 ---------------------~~~~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~ 98 (105)
-.++....+-++++||+.+.+|++++| |.|..+.++.|+......||.-
T Consensus 296 ds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~I 367 (440)
T KOG0726|consen 296 DSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQI 367 (440)
T ss_pred cCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEE
Confidence 024445678899999999999999998 8999999999998887776643
No 40
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.52 E-value=4e-14 Score=85.42 Aligned_cols=67 Identities=39% Similarity=0.531 Sum_probs=55.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCccccce-------------------------------------------------
Q psy4924 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA------------------------------------------------- 49 (105)
Q Consensus 19 ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~------------------------------------------------- 49 (105)
++|+||||+|||++++.+|+.++.+++.++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 6899999999999999999999988876654
Q ss_pred --------------eeecccCCEEEEEeeCCCCCCCHHhh-cccceEEEeC
Q psy4924 50 --------------IFFKKYPNVLIFTTSNLTGAIDLAFL-DRADIKQYIG 85 (105)
Q Consensus 50 --------------~~~~~~~~~~~~~~~n~~~~~d~~~~-~r~~~~~~~~ 85 (105)
-......++.+++++|.++.+++++. +||+..++++
T Consensus 81 ~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-
T ss_pred ccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcEEEEcC
Confidence 01122245899999999999999999 9999999876
No 41
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.52 E-value=6.2e-14 Score=98.08 Aligned_cols=96 Identities=21% Similarity=0.326 Sum_probs=72.9
Q ss_pred ccccccccccCCc--eEEEEcCCCCCHHHHHHHHHHHhCCCccccce---------------------------------
Q psy4924 5 HSKVKSNIISWNR--VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA--------------------------------- 49 (105)
Q Consensus 5 ~~~~~~~~~~~~~--~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~--------------------------------- 49 (105)
..+++..++..+. ..+||||||+||||+|+.||...+..|..++.
T Consensus 35 ~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIH 114 (436)
T COG2256 35 EGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEEARKNRLLGRRTILFLDEIH 114 (436)
T ss_pred CCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHHHHHHHHhcCCceEEEEehhh
Confidence 3445555555443 69999999999999999999999999988776
Q ss_pred ----------eeecccCCEEEEEee--CCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 50 ----------IFFKKYPNVLIFTTS--NLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 50 ----------~~~~~~~~~~~~~~~--n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
+..-+...+++|++| |+...+.+++++|+.+.. +...+.+++..++++.+.
T Consensus 115 RfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~-lk~L~~~di~~~l~ra~~ 177 (436)
T COG2256 115 RFNKAQQDALLPHVENGTIILIGATTENPSFELNPALLSRARVFE-LKPLSSEDIKKLLKRALL 177 (436)
T ss_pred hcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhhhheee-eecCCHHHHHHHHHHHHh
Confidence 134455667777765 677899999999987654 455578888888888543
No 42
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.1e-13 Score=102.26 Aligned_cols=84 Identities=26% Similarity=0.442 Sum_probs=69.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce---------------------------------------------
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA--------------------------------------------- 49 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~--------------------------------------------- 49 (105)
.|..++|+||||+|||+|++.||+.++..|+.++.
T Consensus 349 kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDK 428 (782)
T COG0466 349 KGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDK 428 (782)
T ss_pred CCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCCeEEeechhh
Confidence 36789999999999999999999999999998776
Q ss_pred -------------------------------eeecccCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHH
Q psy4924 50 -------------------------------IFFKKYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSS 98 (105)
Q Consensus 50 -------------------------------~~~~~~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~ 98 (105)
+.++. ..|++++|.|..+.++.+++||+++....+|. .++..+|-++
T Consensus 429 m~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDL-S~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt-~~EKl~IAk~ 506 (782)
T COG0466 429 MGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDL-SKVMFIATANSLDTIPAPLLDRMEVIRLSGYT-EDEKLEIAKR 506 (782)
T ss_pred ccCCCCCChHHHHHhhcCHhhcCchhhccccCccch-hheEEEeecCccccCChHHhcceeeeeecCCC-hHHHHHHHHH
Confidence 01111 56899999999999999999999988877777 5555666655
Q ss_pred HH
Q psy4924 99 CV 100 (105)
Q Consensus 99 ~~ 100 (105)
++
T Consensus 507 ~L 508 (782)
T COG0466 507 HL 508 (782)
T ss_pred hc
Confidence 54
No 43
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.48 E-value=3.7e-13 Score=92.81 Aligned_cols=87 Identities=23% Similarity=0.336 Sum_probs=71.2
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-------------------------------------------
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA------------------------------------------- 49 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~------------------------------------------- 49 (105)
+..++.++|.||||||||++++.+|+.++.+++.+..
T Consensus 61 l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illl 140 (327)
T TIGR01650 61 FAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCF 140 (327)
T ss_pred HhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEe
Confidence 3457889999999999999999999999988865443
Q ss_pred ------------------------------eeecccCCEEEEEeeCCCC------------CCCHHhhcccceEEEeCCC
Q psy4924 50 ------------------------------IFFKKYPNVLIFTTSNLTG------------AIDLAFLDRADIKQYIGFP 87 (105)
Q Consensus 50 ------------------------------~~~~~~~~~~~~~~~n~~~------------~~d~~~~~r~~~~~~~~~~ 87 (105)
..+..++.+.+++|.|... .++.++++||.+.+.++||
T Consensus 141 DEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp 220 (327)
T TIGR01650 141 DEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYL 220 (327)
T ss_pred chhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCC
Confidence 0234556788999999743 4589999999999999999
Q ss_pred CHHHHHHHHHHH
Q psy4924 88 SAAAIFNIFSSC 99 (105)
Q Consensus 88 ~~~~~~~i~~~~ 99 (105)
+.++...|+.+.
T Consensus 221 ~~e~E~~Il~~~ 232 (327)
T TIGR01650 221 EHDNEAAIVLAK 232 (327)
T ss_pred CHHHHHHHHHhh
Confidence 999888887654
No 44
>KOG0741|consensus
Probab=99.48 E-value=1.7e-14 Score=103.96 Aligned_cols=90 Identities=27% Similarity=0.410 Sum_probs=73.4
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-------------------------------------------
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA------------------------------------------- 49 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~------------------------------------------- 49 (105)
+..-++++||||||+|||.+||.|...++..--.+-.
T Consensus 253 i~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDE 332 (744)
T KOG0741|consen 253 IKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDE 332 (744)
T ss_pred ccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehh
Confidence 5567899999999999999999999999975432221
Q ss_pred -----------------------------eeecccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHH
Q psy4924 50 -----------------------------IFFKKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSS 98 (105)
Q Consensus 50 -----------------------------~~~~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~ 98 (105)
-..+.-.++.+|+.||+.+.+|+|++| |++++..+..|++..+.+|++-
T Consensus 333 iDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~I 412 (744)
T KOG0741|consen 333 IDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKI 412 (744)
T ss_pred hHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEh
Confidence 023444778999999999999999998 9999999999999988877765
Q ss_pred HHHH
Q psy4924 99 CVEE 102 (105)
Q Consensus 99 ~~~~ 102 (105)
+.+.
T Consensus 413 HT~r 416 (744)
T KOG0741|consen 413 HTKR 416 (744)
T ss_pred hhhh
Confidence 5443
No 45
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.43 E-value=1.6e-12 Score=90.04 Aligned_cols=87 Identities=23% Similarity=0.413 Sum_probs=68.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCccccce---------------------e------------------------
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA---------------------I------------------------ 50 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~---------------------~------------------------ 50 (105)
...++|+||||+||||+|+++|++++..+..... +
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~ 130 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPGDLAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFR 130 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChHHHHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcc
Confidence 4579999999999999999999999876543221 0
Q ss_pred ---eec----------ccCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 51 ---FFK----------KYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 51 ---~~~----------~~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
.+. ..+++.++++|++...++.++.+||...+.++.++.+++.+++.+....
T Consensus 131 ~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~ 195 (328)
T PRK00080 131 LDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARI 195 (328)
T ss_pred eeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHH
Confidence 000 1134677889999899999999999999999999999999999877653
No 46
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.43 E-value=2.3e-12 Score=88.12 Aligned_cols=86 Identities=23% Similarity=0.400 Sum_probs=67.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCccccce---------------------e------------------ee----
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA---------------------I------------------FF---- 52 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~---------------------~------------------~~---- 52 (105)
...++|+||||+||||+++++|++++.++..... + .+
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~ 109 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFR 109 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHHHHHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhh
Confidence 4569999999999999999999999876533221 0 00
Q ss_pred ---------------cccCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 53 ---------------KKYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 53 ---------------~~~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
...++..++++|+++..++.++.+||...+.++.++.+++..++++...
T Consensus 110 ~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~ 173 (305)
T TIGR00635 110 LDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAG 173 (305)
T ss_pred eeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHH
Confidence 0113467888889988999999999998889999999999999887654
No 47
>KOG0732|consensus
Probab=99.42 E-value=6.4e-13 Score=101.69 Aligned_cols=87 Identities=32% Similarity=0.372 Sum_probs=72.8
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-------------------------------------------
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA------------------------------------------- 49 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~------------------------------------------- 49 (105)
+.++++++++||||+|||..|+++|.....-.-.++.
T Consensus 296 itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGl 375 (1080)
T KOG0732|consen 296 ITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGL 375 (1080)
T ss_pred cCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCcHHHHHHHHHHHHhccCceEEeccccccc
Confidence 7789999999999999999999999877643322221
Q ss_pred -----------------------eeecccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHHH
Q psy4924 50 -----------------------IFFKKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSSC 99 (105)
Q Consensus 50 -----------------------~~~~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~~ 99 (105)
..+...++++++++||+++.+|+++.+ ||+..+++++|+.+++.+|+...
T Consensus 376 apvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ih 450 (1080)
T KOG0732|consen 376 APVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIH 450 (1080)
T ss_pred cccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHh
Confidence 145666889999999999999999987 89999999999999998887654
No 48
>KOG0730|consensus
Probab=99.41 E-value=1e-12 Score=96.33 Aligned_cols=91 Identities=31% Similarity=0.405 Sum_probs=77.6
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-------------------------------------------
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA------------------------------------------- 49 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~------------------------------------------- 49 (105)
+.+++++++|||||+|||.+++++|++.++.++.+..
T Consensus 215 ~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r 294 (693)
T KOG0730|consen 215 IKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKR 294 (693)
T ss_pred CCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcc
Confidence 6779999999999999999999999999977655443
Q ss_pred ------------------eeecccCCEEEEEeeCCCCCCCHHhhc-ccceEEEeCCCCHHHHHHHHHHHHHHh
Q psy4924 50 ------------------IFFKKYPNVLIFTTSNLTGAIDLAFLD-RADIKQYIGFPSAAAIFNIFSSCVEEL 103 (105)
Q Consensus 50 ------------------~~~~~~~~~~~~~~~n~~~~~d~~~~~-r~~~~~~~~~~~~~~~~~i~~~~~~~l 103 (105)
-.+.....+++++++|+++.+|+++.| |||..+.++.|+...+..|+..+.+.+
T Consensus 295 ~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~ 367 (693)
T KOG0730|consen 295 EGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKM 367 (693)
T ss_pred cccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhc
Confidence 023344678999999999999999887 999999999999999999998877643
No 49
>KOG2004|consensus
Probab=99.40 E-value=1.1e-12 Score=97.28 Aligned_cols=83 Identities=25% Similarity=0.441 Sum_probs=67.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce---------------------------------------------
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA--------------------------------------------- 49 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~--------------------------------------------- 49 (105)
.|+.++++||||+|||++++.||+.++..|+..+.
T Consensus 437 qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 437 QGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDK 516 (906)
T ss_pred CCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCceEEeehhhh
Confidence 48899999999999999999999999999987765
Q ss_pred -------------------------------eeecccCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHH
Q psy4924 50 -------------------------------IFFKKYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSS 98 (105)
Q Consensus 50 -------------------------------~~~~~~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~ 98 (105)
+.++. ..|++++|.|..+.++++++||++++...+|.. ++..+|-.+
T Consensus 517 lG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DL-SkVLFicTAN~idtIP~pLlDRMEvIelsGYv~-eEKv~IA~~ 594 (906)
T KOG2004|consen 517 LGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDL-SKVLFICTANVIDTIPPPLLDRMEVIELSGYVA-EEKVKIAER 594 (906)
T ss_pred hCCCCCCChHHHHHHhcChhhccchhhhccccccch-hheEEEEeccccccCChhhhhhhheeeccCccH-HHHHHHHHH
Confidence 01111 568899999999999999999999998888874 444444444
Q ss_pred H
Q psy4924 99 C 99 (105)
Q Consensus 99 ~ 99 (105)
+
T Consensus 595 y 595 (906)
T KOG2004|consen 595 Y 595 (906)
T ss_pred h
Confidence 3
No 50
>PRK08118 topology modulation protein; Reviewed
Probab=99.40 E-value=1.5e-12 Score=82.58 Aligned_cols=82 Identities=26% Similarity=0.523 Sum_probs=63.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCccccceee-------------------ecccCCEEEEEeeCCCCCCCHHhhcc
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIF-------------------FKKYPNVLIFTTSNLTGAIDLAFLDR 77 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~n~~~~~d~~~~~r 77 (105)
..|+++|||||||||+|+.|++.++.++++.+.+. +...+.| +..+++...++. .+.+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~~~~~~~~~~~~~~~~~~w--VidG~~~~~~~~-~l~~ 78 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPKEEQITVQNELVKEDEW--IIDGNYGGTMDI-RLNA 78 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCCCHHHHHHHHHHHhcCCCE--EEeCCcchHHHH-HHHh
Confidence 46899999999999999999999999988777521 1122333 444566555554 4567
Q ss_pred cceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 78 ADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 78 ~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
+|..++++.|...+..++++|.++
T Consensus 79 ~d~vi~Ld~p~~~~~~R~~~R~~~ 102 (167)
T PRK08118 79 ADTIIFLDIPRTICLYRAFKRRVQ 102 (167)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHH
Confidence 999999999999999999999775
No 51
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.37 E-value=5.1e-12 Score=95.85 Aligned_cols=85 Identities=25% Similarity=0.355 Sum_probs=67.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-------------------------------------e-------
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA-------------------------------------I------- 50 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~-------------------------------------~------- 50 (105)
.+..++|+||||+|||++|+++|+.++.+++.+.. +
T Consensus 346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~villDEidk 425 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDK 425 (775)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCCCEEEEechhh
Confidence 35579999999999999999999999877764321 0
Q ss_pred ---------------eec----------------ccCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHH
Q psy4924 51 ---------------FFK----------------KYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSC 99 (105)
Q Consensus 51 ---------------~~~----------------~~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~ 99 (105)
.++ ...++++++|+|..+.+++++++|++ .+.++.++.+++.+|++++
T Consensus 426 ~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~R~~-vi~~~~~~~~e~~~I~~~~ 504 (775)
T TIGR00763 426 IGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLDRME-VIELSGYTEEEKLEIAKKY 504 (775)
T ss_pred cCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhCCee-EEecCCCCHHHHHHHHHHH
Confidence 000 01357889999999999999999997 4677888888999888876
Q ss_pred H
Q psy4924 100 V 100 (105)
Q Consensus 100 ~ 100 (105)
+
T Consensus 505 l 505 (775)
T TIGR00763 505 L 505 (775)
T ss_pred H
Confidence 5
No 52
>PRK07261 topology modulation protein; Provisional
Probab=99.36 E-value=3.9e-12 Score=80.90 Aligned_cols=82 Identities=15% Similarity=0.292 Sum_probs=62.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCccccceeee-------------------cccCCEEEEEeeCCCCCCCHHhhccc
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFF-------------------KKYPNVLIFTTSNLTGAIDLAFLDRA 78 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~n~~~~~d~~~~~r~ 78 (105)
.++|+|+||||||||++.++..++.+.++.+.+.. -..+. ++...++....-...++++
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--wIidg~~~~~~~~~~l~~a 79 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDDMIADISNFLLKHD--WIIDGNYSWCLYEERMQEA 79 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHHHHHHHHHHHhCCC--EEEcCcchhhhHHHHHHHC
Confidence 58999999999999999999999999888775321 11133 3334444443323456789
Q ss_pred ceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 79 DIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 79 ~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
|..++++.|...++.++++|.+.
T Consensus 80 d~vI~Ld~p~~~~~~R~lkR~~~ 102 (171)
T PRK07261 80 DQIIFLNFSRFNCLYRAFKRYLK 102 (171)
T ss_pred CEEEEEcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999764
No 53
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.33 E-value=8.7e-12 Score=86.41 Aligned_cols=86 Identities=31% Similarity=0.465 Sum_probs=68.6
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-------------------------------------------
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA------------------------------------------- 49 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~------------------------------------------- 49 (105)
+-.+++++|.||||+|||++++.+|..++.++..+..
T Consensus 40 ~~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~D 119 (329)
T COG0714 40 LLAGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLD 119 (329)
T ss_pred HHcCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEe
Confidence 3458899999999999999999999999998876665
Q ss_pred --------------------------ee-ecccCCEEEEEeeC-----CCCCCCHHhhcccceEEEeCCC-CHHHHHHHH
Q psy4924 50 --------------------------IF-FKKYPNVLIFTTSN-----LTGAIDLAFLDRADIKQYIGFP-SAAAIFNIF 96 (105)
Q Consensus 50 --------------------------~~-~~~~~~~~~~~~~n-----~~~~~d~~~~~r~~~~~~~~~~-~~~~~~~i~ 96 (105)
.. +.....+++++|+| ....++.++++||.+.+++++| ..++...+.
T Consensus 120 EInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~ 199 (329)
T COG0714 120 EINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIIL 199 (329)
T ss_pred ccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHH
Confidence 13 44557788899989 5567899999999999999999 444444444
Q ss_pred HH
Q psy4924 97 SS 98 (105)
Q Consensus 97 ~~ 98 (105)
.+
T Consensus 200 ~~ 201 (329)
T COG0714 200 AR 201 (329)
T ss_pred Hh
Confidence 33
No 54
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.33 E-value=1.4e-11 Score=83.11 Aligned_cols=43 Identities=26% Similarity=0.369 Sum_probs=34.9
Q ss_pred CCEEEEEeeCCC-----CCCCHHhhcccceEEEeCCCCHHHHHHHHHHH
Q psy4924 56 PNVLIFTTSNLT-----GAIDLAFLDRADIKQYIGFPSAAAIFNIFSSC 99 (105)
Q Consensus 56 ~~~~~~~~~n~~-----~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~ 99 (105)
+++.+++|+|.. ...+.++.+|| ..+++++|+.++..+|+.+.
T Consensus 150 ~~frvIaTsN~~~~~g~~~l~~aL~~R~-~~i~i~~P~~~~e~~Il~~~ 197 (262)
T TIGR02640 150 PEFRVIFTSNPVEYAGVHETQDALLDRL-ITIFMDYPDIDTETAILRAK 197 (262)
T ss_pred CCCEEEEeeCCccccceecccHHHHhhc-EEEECCCCCHHHHHHHHHHh
Confidence 467789999975 25588899998 57899999999888888764
No 55
>KOG2028|consensus
Probab=99.29 E-value=1.9e-11 Score=85.47 Aligned_cols=97 Identities=23% Similarity=0.364 Sum_probs=71.4
Q ss_pred cccccccccCCc--eEEEEcCCCCCHHHHHHHHHHHhCCC---ccccce-------------------------------
Q psy4924 6 SKVKSNIISWNR--VVLLHGPPGTGKTSLCKAVAQKLSIR---LQTPQA------------------------------- 49 (105)
Q Consensus 6 ~~~~~~~~~~~~--~ill~Gp~GsGKT~l~~~la~~~~~~---~~~~~~------------------------------- 49 (105)
.+++.++++.++ .++||||||+||||||+.|+.....+ |+.++.
T Consensus 150 ~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq~~~~l~krkTilFiD 229 (554)
T KOG2028|consen 150 DGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQNEKSLTKRKTILFID 229 (554)
T ss_pred chHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHHHHHHhhhcceeEEEeH
Confidence 445555555555 59999999999999999999988877 444443
Q ss_pred -------------eeecccCCEEEEEee--CCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHHHh
Q psy4924 50 -------------IFFKKYPNVLIFTTS--NLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEEL 103 (105)
Q Consensus 50 -------------~~~~~~~~~~~~~~~--n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~~l 103 (105)
+...+...+.+|++| |....+..+++.|+-+.. +...+.++...|+++.+.-|
T Consensus 230 EiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~Vfv-LekL~~n~v~~iL~raia~l 297 (554)
T KOG2028|consen 230 EIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFV-LEKLPVNAVVTILMRAIASL 297 (554)
T ss_pred HhhhhhhhhhhcccceeccCceEEEecccCCCccchhHHHHhccceeE-eccCCHHHHHHHHHHHHHhh
Confidence 134455667777765 677899999999997654 45556888888888876543
No 56
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.29 E-value=5.6e-12 Score=76.43 Aligned_cols=62 Identities=34% Similarity=0.420 Sum_probs=40.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCccccce------------------------------------------------
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA------------------------------------------------ 49 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~------------------------------------------------ 49 (105)
+++|+|+||+|||++++++|+.++..+.++..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrappktQs 80 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAPPKTQS 80 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS-HHHHH
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCCHHHHH
Confidence 48999999999999999999999999876654
Q ss_pred ---------------eeecccCCEEEEEeeCCCC-----CCCHHhhcccc
Q psy4924 50 ---------------IFFKKYPNVLIFTTSNLTG-----AIDLAFLDRAD 79 (105)
Q Consensus 50 ---------------~~~~~~~~~~~~~~~n~~~-----~~d~~~~~r~~ 79 (105)
.......++++++|.|+.+ .++.+.++||-
T Consensus 81 AlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 81 ALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp HHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred HHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 1456667789999999864 77888899884
No 57
>PHA02244 ATPase-like protein
Probab=99.28 E-value=3.2e-11 Score=84.52 Aligned_cols=76 Identities=22% Similarity=0.286 Sum_probs=60.1
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-------------------------------------------
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA------------------------------------------- 49 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~------------------------------------------- 49 (105)
+..+.+++|+||+|||||++|+++|..++.+++.+..
T Consensus 116 l~~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~~GgvLiLDEId~a~p~ 195 (383)
T PHA02244 116 VNANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFKKGGLFFIDEIDASIPE 195 (383)
T ss_pred HhcCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhhcCCEEEEeCcCcCCHH
Confidence 5567889999999999999999999999988763321
Q ss_pred ------------------eeecccCCEEEEEeeCCC-----------CCCCHHhhcccceEEEeCCCCH
Q psy4924 50 ------------------IFFKKYPNVLIFTTSNLT-----------GAIDLAFLDRADIKQYIGFPSA 89 (105)
Q Consensus 50 ------------------~~~~~~~~~~~~~~~n~~-----------~~~d~~~~~r~~~~~~~~~~~~ 89 (105)
.....++++.+++|+|.. ..++.++++||- .+.+++|..
T Consensus 196 vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv-~I~~dyp~~ 263 (383)
T PHA02244 196 ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFA-PIEFDYDEK 263 (383)
T ss_pred HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcE-EeeCCCCcH
Confidence 022345778899999973 567999999995 678999973
No 58
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.27 E-value=2.1e-11 Score=74.65 Aligned_cols=32 Identities=44% Similarity=0.634 Sum_probs=27.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
+++|+||||+|||++++.+|+.++.++..+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~ 32 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINC 32 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEe
Confidence 48999999999999999999999888765543
No 59
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.26 E-value=5.9e-11 Score=79.89 Aligned_cols=33 Identities=15% Similarity=0.126 Sum_probs=28.5
Q ss_pred CCHHhhcccceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 70 IDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 70 ~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
+++++.+||+..+.++.++.+++..++.+++.+
T Consensus 161 ~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 161 LNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred cChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 567888999988999988999999999988764
No 60
>PRK06893 DNA replication initiation factor; Validated
Probab=99.25 E-value=2.8e-11 Score=80.19 Aligned_cols=86 Identities=13% Similarity=0.121 Sum_probs=55.2
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHh-----CCCccccce-----------------e-----------------------
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKL-----SIRLQTPQA-----------------I----------------------- 50 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~-----~~~~~~~~~-----------------~----------------------- 50 (105)
.+.++||||||+|||||++++|+++ ...+..... +
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~dlLilDDi~~~~~~~~~~~~l~~l~n 118 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFSPAVLENLEQQDLVCLDDLQAVIGNEEWELAIFDLFN 118 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhhHHHHhhcccCCEEEEeChhhhcCChHHHHHHHHHHH
Confidence 3458999999999999999999886 222222210 0
Q ss_pred eecccC-CEEEEEeeCCCCCCC---HHhhccc--ceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 51 FFKKYP-NVLIFTTSNLTGAID---LAFLDRA--DIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 51 ~~~~~~-~~~~~~~~n~~~~~d---~~~~~r~--~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
...... .++++.++..+..++ +.+.+|+ +....++.|+.+.+..++++...
T Consensus 119 ~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~ 175 (229)
T PRK06893 119 RIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAY 175 (229)
T ss_pred HHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHH
Confidence 011112 233444444454433 5566664 57788999999999999987764
No 61
>CHL00181 cbbX CbbX; Provisional
Probab=99.21 E-value=1e-10 Score=79.89 Aligned_cols=89 Identities=18% Similarity=0.189 Sum_probs=62.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCC-------Cccccce--------------------------ee----------
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI-------RLQTPQA--------------------------IF---------- 51 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~-------~~~~~~~--------------------------~~---------- 51 (105)
.+.+++|+||||||||++|+++|..+.. +++.++. +.
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~ 137 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKP 137 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHHccCCEEEEEccchhccC
Confidence 3556999999999999999999887531 1221111 00
Q ss_pred -----------------ec-ccCCEEEEEeeCCC-----CCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHHHh
Q psy4924 52 -----------------FK-KYPNVLIFTTSNLT-----GAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEEL 103 (105)
Q Consensus 52 -----------------~~-~~~~~~~~~~~n~~-----~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~~l 103 (105)
++ ....+.++.+++.. ...++++.+||+..+.++.++.+++.+|+++++++.
T Consensus 138 ~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~ 212 (287)
T CHL00181 138 DNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQ 212 (287)
T ss_pred CCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHh
Confidence 11 11345666666532 133578899999999999999999999999998753
No 62
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.21 E-value=1.1e-10 Score=88.59 Aligned_cols=85 Identities=25% Similarity=0.358 Sum_probs=65.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-------------------------------------e-------
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA-------------------------------------I------- 50 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~-------------------------------------~------- 50 (105)
.+..++|+||||+||||+++.+|+.++.+++.++. +
T Consensus 348 ~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk 427 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDK 427 (784)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhh
Confidence 46789999999999999999999999988754432 0
Q ss_pred ---------------eec----------------ccCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHH
Q psy4924 51 ---------------FFK----------------KYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSC 99 (105)
Q Consensus 51 ---------------~~~----------------~~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~ 99 (105)
.++ ...++++++|+|.. .+++++++|+++.. +..++.++..+|.+++
T Consensus 428 ~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~R~~ii~-~~~~t~eek~~Ia~~~ 505 (784)
T PRK10787 428 MSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLDRMEVIR-LSGYTEDEKLNIAKRH 505 (784)
T ss_pred cccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhcceeeee-cCCCCHHHHHHHHHHh
Confidence 011 11568889999886 69999999998655 4555588888888887
Q ss_pred HH
Q psy4924 100 VE 101 (105)
Q Consensus 100 ~~ 101 (105)
+.
T Consensus 506 L~ 507 (784)
T PRK10787 506 LL 507 (784)
T ss_pred hh
Confidence 74
No 63
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.20 E-value=1.1e-10 Score=77.68 Aligned_cols=85 Identities=16% Similarity=0.093 Sum_probs=56.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCC-----ccccc----------------------ee------------------
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIR-----LQTPQ----------------------AI------------------ 50 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~-----~~~~~----------------------~~------------------ 50 (105)
+..++|+||+|||||||+++++++.... +...+ .+
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~dlliiDdi~~~~~~~~~~~~lf~l~n 124 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWFVPEVLEGMEQLSLVCIDNIECIAGDELWEMAIFDLYN 124 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhhhHHHHHHhhhCCEEEEeChhhhcCCHHHHHHHHHHHH
Confidence 4689999999999999999999876532 11110 00
Q ss_pred eecccCC-EEEEEeeCCCCC---CCHHhhcccc--eEEEeCCCCHHHHHHHHHHHH
Q psy4924 51 FFKKYPN-VLIFTTSNLTGA---IDLAFLDRAD--IKQYIGFPSAAAIFNIFSSCV 100 (105)
Q Consensus 51 ~~~~~~~-~~~~~~~n~~~~---~d~~~~~r~~--~~~~~~~~~~~~~~~i~~~~~ 100 (105)
...+... .+++.+++.+.. +.+.+.+|+. ....+..|+.+++.+++.+..
T Consensus 125 ~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a 180 (235)
T PRK08084 125 RILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRA 180 (235)
T ss_pred HHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHH
Confidence 1111223 344444455444 5677888875 788889999999988887744
No 64
>PRK06620 hypothetical protein; Validated
Probab=99.19 E-value=1.3e-10 Score=76.45 Aligned_cols=84 Identities=17% Similarity=0.222 Sum_probs=57.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-----------e------------------eecccCCEEEEEeeCCC
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA-----------I------------------FFKKYPNVLIFTTSNLT 67 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~-----------~------------------~~~~~~~~~~~~~~n~~ 67 (105)
+.++||||+|||||||++++++..+..+..... + .+.+....++++++..+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~~~~~~~~d~lliDdi~~~~~~~lf~l~N~~~e~g~~ilits~~~p 124 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFNEEILEKYNAFIIEDIENWQEPALLHIFNIINEKQKYLLLTSSDKS 124 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcchhhhchhHHhcCCEEEEeccccchHHHHHHHHHHHHhcCCEEEEEcCCCc
Confidence 569999999999999999999987754421110 0 11133445566665554
Q ss_pred CC--CCHHhhcccc--eEEEeCCCCHHHHHHHHHHHHH
Q psy4924 68 GA--IDLAFLDRAD--IKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 68 ~~--~d~~~~~r~~--~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
.. + +.+..|+. ....+..|+.+.+..++.+...
T Consensus 125 ~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 125 RNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred cccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence 43 4 55666764 5678899999998888887765
No 65
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.16 E-value=2.5e-10 Score=81.37 Aligned_cols=85 Identities=24% Similarity=0.333 Sum_probs=61.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCcccccee-------------------------------------------eec
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAI-------------------------------------------FFK 53 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~~-------------------------------------------~~~ 53 (105)
..++|+||||+||||+|+++++..+.++..+... ..-
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~l 116 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHV 116 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccccHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHh
Confidence 4799999999999999999999998877654430 111
Q ss_pred ccCCEEEEEee--CCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 54 KYPNVLIFTTS--NLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 54 ~~~~~~~~~~~--n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
+...+.+++++ |....+++++.+|+ ..+.+..++.++...++.+.+.+
T Consensus 117 e~~~iilI~att~n~~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 117 EDGTITLIGATTENPSFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred hcCcEEEEEeCCCChhhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHH
Confidence 12345555554 33457888899999 45667777888888888887643
No 66
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.16 E-value=1.9e-10 Score=78.47 Aligned_cols=89 Identities=20% Similarity=0.225 Sum_probs=62.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCC-------Cccccce--------------------------ee----------
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI-------RLQTPQA--------------------------IF---------- 51 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~-------~~~~~~~--------------------------~~---------- 51 (105)
++.+++|+||||||||++|++++..+.. ++..++. +.
T Consensus 57 ~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~~gvL~iDEi~~L~~~ 136 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKRAMGGVLFIDEAYYLYRP 136 (284)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHHccCcEEEEechhhhccC
Confidence 3558999999999999999988877642 1221110 00
Q ss_pred -----------------e-cccCCEEEEEeeCCC--C---CCCHHhhcccceEEEeCCCCHHHHHHHHHHHHHHh
Q psy4924 52 -----------------F-KKYPNVLIFTTSNLT--G---AIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEEL 103 (105)
Q Consensus 52 -----------------~-~~~~~~~~~~~~n~~--~---~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~~l 103 (105)
+ .....+.++++++.. + .+++++.+||...+.++.++.+++..|+++++++.
T Consensus 137 ~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~ 211 (284)
T TIGR02880 137 DNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQ 211 (284)
T ss_pred CCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHh
Confidence 0 111356667766542 1 24788899999999999999999999999988763
No 67
>PRK09087 hypothetical protein; Validated
Probab=99.14 E-value=2.3e-10 Score=75.80 Aligned_cols=87 Identities=23% Similarity=0.277 Sum_probs=58.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-------------e--------------------eecccCCEEEEE
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA-------------I--------------------FFKKYPNVLIFT 62 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~-------------~--------------------~~~~~~~~~~~~ 62 (105)
.+.++|+||+|||||||++++|...+..+++... + .+......+++.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilit 123 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSDAANAAAEGPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMT 123 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchHHHHhhhcCeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEE
Confidence 3459999999999999999999887766554410 0 111112344444
Q ss_pred eeCCCC--C-CCHHhhccc--ceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 63 TSNLTG--A-IDLAFLDRA--DIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 63 ~~n~~~--~-~d~~~~~r~--~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
++..+. . ..+.+..|+ ...+.+..|+.+.+..++.+..+.
T Consensus 124 s~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~ 168 (226)
T PRK09087 124 SRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFAD 168 (226)
T ss_pred CCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHH
Confidence 443332 2 244466676 478888999999999999988754
No 68
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.10 E-value=3.1e-10 Score=85.86 Aligned_cols=86 Identities=22% Similarity=0.293 Sum_probs=63.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHh----------CCCccccce------------------------------e-----
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKL----------SIRLQTPQA------------------------------I----- 50 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~----------~~~~~~~~~------------------------------~----- 50 (105)
...++|+||||+|||++++.+|..+ +..++.++. +
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDE 282 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDE 282 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEec
Confidence 4579999999999999999999987 433433331 0
Q ss_pred --ee--------------------cccCCEEEEEeeCCC-----CCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 51 --FF--------------------KKYPNVLIFTTSNLT-----GAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 51 --~~--------------------~~~~~~~~~~~~n~~-----~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
.+ -....+.+|++|+.. ...|.++.+||. .+.++.|+.++...|+......
T Consensus 283 ih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~ 360 (731)
T TIGR02639 283 IHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEK 360 (731)
T ss_pred HHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHH
Confidence 00 012357788888863 357999999998 5799999999999999876543
No 69
>KOG0736|consensus
Probab=99.10 E-value=4.5e-10 Score=84.18 Aligned_cols=87 Identities=25% Similarity=0.323 Sum_probs=75.2
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCccccce----------------------------------------------
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA---------------------------------------------- 49 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~---------------------------------------------- 49 (105)
...++|+|+||||||++++++|.+++.+++.++.
T Consensus 431 ~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dgge 510 (953)
T KOG0736|consen 431 NPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGGE 510 (953)
T ss_pred ceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCCch
Confidence 3469999999999999999999999999998886
Q ss_pred ---------e--e----ecccCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 50 ---------I--F----FKKYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 50 ---------~--~----~~~~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
+ . -...++++++++++..+.+++.+...|-..+.++.|++++++++++-+..+
T Consensus 511 d~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~ 578 (953)
T KOG0736|consen 511 DARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNH 578 (953)
T ss_pred hHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhc
Confidence 0 1 124467899999999999999999988889999999999999999877654
No 70
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.09 E-value=8.5e-11 Score=76.89 Aligned_cols=44 Identities=25% Similarity=0.421 Sum_probs=38.6
Q ss_pred CCCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 1 MKFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 1 ~~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
|+||+..+++++ +..|..+.++||||||||||+|++...-....
T Consensus 10 K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~ 56 (240)
T COG1126 10 KSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDS 56 (240)
T ss_pred EEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCC
Confidence 579999999998 88999999999999999999999987655443
No 71
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.09 E-value=7.8e-10 Score=80.07 Aligned_cols=84 Identities=18% Similarity=0.264 Sum_probs=58.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCC------------------------ccccce-----------------------
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSIR------------------------LQTPQA----------------------- 49 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~~------------------------~~~~~~----------------------- 49 (105)
..++|+||||+||||+|+++|+.+++. ++..+.
T Consensus 37 ~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~ 116 (472)
T PRK14962 37 HAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEG 116 (472)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcC
Confidence 348999999999999999999998863 111111
Q ss_pred ----e------------------eecc-cCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 50 ----I------------------FFKK-YPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 50 ----~------------------~~~~-~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
+ .++. .+.+.++.+++.+..+..++.+|+. .+.+..++.+++..++.+...
T Consensus 117 ~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~-vv~f~~l~~~el~~~L~~i~~ 190 (472)
T PRK14962 117 KYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQ-VIEFRNISDELIIKRLQEVAE 190 (472)
T ss_pred CeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcE-EEEECCccHHHHHHHHHHHHH
Confidence 0 1222 2456666666666788888899996 556777777877777766553
No 72
>PRK06217 hypothetical protein; Validated
Probab=99.09 E-value=1.7e-10 Score=73.93 Aligned_cols=79 Identities=16% Similarity=0.264 Sum_probs=56.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCccccceee------------------------ecccCCEEEEEeeCCCCCCCHH
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIF------------------------FKKYPNVLIFTTSNLTGAIDLA 73 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~n~~~~~d~~ 73 (105)
.|+|.|+|||||||+++.|++.++.++++.+.+. +...+.++ +. .+... ....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-i~-G~~~~-~~~~ 79 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPTDPPFTTKRPPEERLRLLLEDLRPREGWV-LS-GSALG-WGDP 79 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccCCCCccccCCHHHHHHHHHHHHhcCCCEE-EE-ccHHH-HHHH
Confidence 5899999999999999999999999998877531 11222332 22 23322 1223
Q ss_pred hhcccceEEEeCCCCHHHHHHHHHHH
Q psy4924 74 FLDRADIKQYIGFPSAAAIFNIFSSC 99 (105)
Q Consensus 74 ~~~r~~~~~~~~~~~~~~~~~i~~~~ 99 (105)
+..+++..++++.|....+.++.+|.
T Consensus 80 ~~~~~d~~i~Ld~~~~~~~~Rl~~R~ 105 (183)
T PRK06217 80 LEPLFDLVVFLTIPPELRLERLRLRE 105 (183)
T ss_pred HHhhCCEEEEEECCHHHHHHHHHcCc
Confidence 45678999999999888888888764
No 73
>PRK13949 shikimate kinase; Provisional
Probab=99.08 E-value=2.4e-10 Score=72.61 Aligned_cols=33 Identities=33% Similarity=0.450 Sum_probs=30.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
+.++|+|||||||||+++.+|+.++.++++.+.
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~ 34 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDF 34 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccH
Confidence 469999999999999999999999999988775
No 74
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.07 E-value=2e-09 Score=71.69 Aligned_cols=87 Identities=29% Similarity=0.300 Sum_probs=65.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCccc---cce--------------------------e---------------
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQT---PQA--------------------------I--------------- 50 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~---~~~--------------------------~--------------- 50 (105)
+...++|||+.|||||++++++..+....... +.. +
T Consensus 51 pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~ 130 (249)
T PF05673_consen 51 PANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSV 130 (249)
T ss_pred CCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHH
Confidence 46689999999999999999999987765433 222 0
Q ss_pred ----eecccCCEEEEEeeCCCCCCC-----------------------HHhhcccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 51 ----FFKKYPNVLIFTTSNLTGAID-----------------------LAFLDRADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 51 ----~~~~~~~~~~~~~~n~~~~~d-----------------------~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
......++++.+|+|+-..+. .++.+||.+.+.+..|++++-.+|+..+.+
T Consensus 131 LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~ 208 (249)
T PF05673_consen 131 LEGGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAE 208 (249)
T ss_pred hcCccccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHH
Confidence 124457789999999742111 134579999999999999999999988875
No 75
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.06 E-value=1.3e-09 Score=74.95 Aligned_cols=83 Identities=20% Similarity=0.338 Sum_probs=58.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-----------------------------------e-----------
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA-----------------------------------I----------- 50 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~-----------------------------------~----------- 50 (105)
..++++||+|+||||++++++++++.++..+.. .
T Consensus 44 ~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~~~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~ 123 (316)
T PHA02544 44 NMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSDCRIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRS 123 (316)
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCcccHHHHHHHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHH
Confidence 456669999999999999999988765432211 0
Q ss_pred eecc-cCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHH
Q psy4924 51 FFKK-YPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCV 100 (105)
Q Consensus 51 ~~~~-~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~ 100 (105)
.++. .....++.++|....+.+++.+|+. .+.++.|+.+++..++....
T Consensus 124 ~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~-~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 124 FMEAYSKNCSFIITANNKNGIIEPLRSRCR-VIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred HHHhcCCCceEEEEcCChhhchHHHHhhce-EEEeCCCCHHHHHHHHHHHH
Confidence 1111 2345677888888888999999996 45678888777766655443
No 76
>PRK04195 replication factor C large subunit; Provisional
Probab=99.06 E-value=1e-09 Score=79.66 Aligned_cols=85 Identities=26% Similarity=0.292 Sum_probs=58.2
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-----------------------------e------eec-------
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA-----------------------------I------FFK------- 53 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~-----------------------------~------~~~------- 53 (105)
.+.++|+||||+||||+|+++|++++.+++.+.. + .+.
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~ 118 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGG 118 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccchhH
Confidence 5789999999999999999999999876654432 0 000
Q ss_pred --------ccCCEEEEEeeCCCCCCCH-HhhcccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 54 --------KYPNVLIFTTSNLTGAIDL-AFLDRADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 54 --------~~~~~~~~~~~n~~~~~d~-~~~~r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
......++.++|.+..... .+.+|+ ..+.++.|+..++..++.+.+.
T Consensus 119 ~~aL~~~l~~~~~~iIli~n~~~~~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~ 174 (482)
T PRK04195 119 ARAILELIKKAKQPIILTANDPYDPSLRELRNAC-LMIEFKRLSTRSIVPVLKRICR 174 (482)
T ss_pred HHHHHHHHHcCCCCEEEeccCccccchhhHhccc-eEEEecCCCHHHHHHHHHHHHH
Confidence 0122335566677776666 344444 5667788888888777776553
No 77
>PRK08727 hypothetical protein; Validated
Probab=99.06 E-value=1.1e-09 Score=72.67 Aligned_cols=85 Identities=18% Similarity=0.238 Sum_probs=55.2
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCccccce----------------------e--------------------eec
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA----------------------I--------------------FFK 53 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~----------------------~--------------------~~~ 53 (105)
...++|+||+|||||||+++++.++......... + .++
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n 120 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGRSLVALDGLESIAGQREDEVALFDFHN 120 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHHHHHHHhcCCEEEEeCcccccCChHHHHHHHHHHH
Confidence 3469999999999999999998775543221111 0 000
Q ss_pred --ccCCEEEEEeeC-CCCCC---CHHhhccc--ceEEEeCCCCHHHHHHHHHHHH
Q psy4924 54 --KYPNVLIFTTSN-LTGAI---DLAFLDRA--DIKQYIGFPSAAAIFNIFSSCV 100 (105)
Q Consensus 54 --~~~~~~~~~~~n-~~~~~---d~~~~~r~--~~~~~~~~~~~~~~~~i~~~~~ 100 (105)
...+..++.+++ .+... ++.+.+|+ ...+.++.|+.+++..++.+..
T Consensus 121 ~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a 175 (233)
T PRK08727 121 RARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERA 175 (233)
T ss_pred HHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHH
Confidence 011222444444 44433 56677785 6778889999999999999754
No 78
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.03 E-value=1.5e-09 Score=71.55 Aligned_cols=86 Identities=22% Similarity=0.233 Sum_probs=53.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCC-----Cccccce------------------------------------------
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSI-----RLQTPQA------------------------------------------ 49 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~-----~~~~~~~------------------------------------------ 49 (105)
.+++||||+|+|||||+++++++... .+..+..
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~~~ 114 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGKQR 114 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcCchH
Confidence 46999999999999999999987642 1211111
Q ss_pred ---------eeecccCCEEEEEeeCCCCC---CCHHhhccc--ceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 50 ---------IFFKKYPNVLIFTTSNLTGA---IDLAFLDRA--DIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 50 ---------~~~~~~~~~~~~~~~n~~~~---~d~~~~~r~--~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
-.+......+++.+...|.. +++.+.+|+ .+...+..|+.+.+..++.+...+
T Consensus 115 ~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~ 181 (219)
T PF00308_consen 115 TQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKE 181 (219)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHH
Confidence 01222344555555555543 455566665 678889999999999999887654
No 79
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.03 E-value=2.3e-10 Score=73.27 Aligned_cols=81 Identities=28% Similarity=0.450 Sum_probs=52.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCcccccee-----------------eecccCCEEEEEeeCCCCCCCHHhhcccc-
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAI-----------------FFKKYPNVLIFTTSNLTGAIDLAFLDRAD- 79 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~n~~~~~d~~~~~r~~- 79 (105)
.++|.|||||||||+|+.|++.++.+.++.... .+..+. ++-..+....+... +++.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~---lv~d~i~~~~v~~r-l~~~d~ 77 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGE---LVPDEIVNGLVKER-LDEADC 77 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCC---ccchHHHHHHHHHH-HHhhcc
Confidence 589999999999999999999988888775542 111111 11110110111111 12223
Q ss_pred --eEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 80 --IKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 80 --~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
..++.++|...+..+.+++.+.+
T Consensus 78 ~~~~I~dg~PR~~~qa~~l~r~l~~ 102 (178)
T COG0563 78 KAGFILDGFPRTLCQARALKRLLKE 102 (178)
T ss_pred cCeEEEeCCCCcHHHHHHHHHHHHH
Confidence 68899999988888999888765
No 80
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.02 E-value=9.6e-10 Score=83.32 Aligned_cols=46 Identities=17% Similarity=0.168 Sum_probs=37.4
Q ss_pred CCEEEEEeeCCCC-----CCCHHhhcccceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 56 PNVLIFTTSNLTG-----AIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 56 ~~~~~~~~~n~~~-----~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
..+.+|++|+.++ ..|+++.+||+ .+.++.|+.++...|+......
T Consensus 314 g~i~vIgATt~~E~~~~~~~D~AL~rRFq-~I~v~ePs~~~~~~IL~~~~~~ 364 (758)
T PRK11034 314 GKIRVIGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPK 364 (758)
T ss_pred CCeEEEecCChHHHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHH
Confidence 4577888888753 57999999997 6899999999999988866543
No 81
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.02 E-value=1.4e-09 Score=83.43 Aligned_cols=85 Identities=21% Similarity=0.282 Sum_probs=61.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHh----------CCCccccce--------------------------------e---
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKL----------SIRLQTPQA--------------------------------I--- 50 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~----------~~~~~~~~~--------------------------------~--- 50 (105)
...++|+||||+|||++++.+|..+ +.+++.++. +
T Consensus 199 ~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfID 278 (857)
T PRK10865 199 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFID 278 (857)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEe
Confidence 4479999999999999999999988 334333221 0
Q ss_pred ----------------------eecccCCEEEEEeeCCCC-----CCCHHhhcccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 51 ----------------------FFKKYPNVLIFTTSNLTG-----AIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 51 ----------------------~~~~~~~~~~~~~~n~~~-----~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
..-..+.+.+|++|+... ..|.++.+||+. +.++.|+.++...++.....
T Consensus 279 Eih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r~~~~~d~al~rRf~~-i~v~eP~~~~~~~iL~~l~~ 355 (857)
T PRK10865 279 ELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQK-VFVAEPSVEDTIAILRGLKE 355 (857)
T ss_pred cHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHHHHHhhhcHHHHhhCCE-EEeCCCCHHHHHHHHHHHhh
Confidence 011123466788888764 589999999984 67899999988888865543
No 82
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.02 E-value=1e-09 Score=79.01 Aligned_cols=86 Identities=17% Similarity=0.242 Sum_probs=58.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCC-----ccccce---------------------------------e--------
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSIR-----LQTPQA---------------------------------I-------- 50 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~~-----~~~~~~---------------------------------~-------- 50 (105)
+.++|+||+|+|||||++++++++... +..+.. +
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~~ 228 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKER 228 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcCCHH
Confidence 579999999999999999999987432 211111 0
Q ss_pred ----------eecccCCEEEEEeeCCCCC---CCHHhhcccc--eEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 51 ----------FFKKYPNVLIFTTSNLTGA---IDLAFLDRAD--IKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 51 ----------~~~~~~~~~~~~~~n~~~~---~d~~~~~r~~--~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
.+......+++.+...+.. +++.+.+|+. ..+.+..|+.+.+..++.+..+.
T Consensus 229 ~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~ 295 (450)
T PRK00149 229 TQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE 295 (450)
T ss_pred HHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH
Confidence 0111122344444444433 5677778884 67889999999999999987653
No 83
>PRK05642 DNA replication initiation factor; Validated
Probab=99.02 E-value=2.1e-09 Score=71.49 Aligned_cols=84 Identities=13% Similarity=0.124 Sum_probs=53.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCC---cccc------------------------cee------------------e
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSIR---LQTP------------------------QAI------------------F 51 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~~---~~~~------------------------~~~------------------~ 51 (105)
+.++|+||+|+|||||++++++++... ...+ +.+ .
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~ 125 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPELLDNLEQYELVCLDDLDVIAGKADWEEALFHLFNR 125 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhhHHHHHhhhhCCEEEEechhhhcCChHHHHHHHHHHHH
Confidence 679999999999999999998765321 1100 000 1
Q ss_pred ecccCCEEEEEeeCCCC---CCCHHhhccc--ceEEEeCCCCHHHHHHHHHHHH
Q psy4924 52 FKKYPNVLIFTTSNLTG---AIDLAFLDRA--DIKQYIGFPSAAAIFNIFSSCV 100 (105)
Q Consensus 52 ~~~~~~~~~~~~~n~~~---~~d~~~~~r~--~~~~~~~~~~~~~~~~i~~~~~ 100 (105)
.......+++.++..+. ...+.+.+|+ .....+..|+.+++..++++..
T Consensus 126 ~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 126 LRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred HHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 11223445555544442 2245667787 4677788989999999888543
No 84
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.02 E-value=1.1e-09 Score=77.85 Aligned_cols=86 Identities=16% Similarity=0.261 Sum_probs=57.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhC-----CCccccce----------------------------e-------------
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLS-----IRLQTPQA----------------------------I------------- 50 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~-----~~~~~~~~----------------------------~------------- 50 (105)
..++|+||+|+|||||++++++++. ..+..+.. +
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~~ 216 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKER 216 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcCCHH
Confidence 4799999999999999999998873 22222111 0
Q ss_pred ----------eecccCCEEEEEeeCCCC---CCCHHhhcccc--eEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 51 ----------FFKKYPNVLIFTTSNLTG---AIDLAFLDRAD--IKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 51 ----------~~~~~~~~~~~~~~n~~~---~~d~~~~~r~~--~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
.+......+++.+...+. .+++.+.+|+. ..+.++.|+.+.+..++.+..+.
T Consensus 217 ~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~ 283 (405)
T TIGR00362 217 TQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEE 283 (405)
T ss_pred HHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 011112234444444443 34566777875 57889999999999999987654
No 85
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.01 E-value=5.7e-10 Score=70.80 Aligned_cols=34 Identities=26% Similarity=0.451 Sum_probs=32.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
...++|+|++|+||||+.+.+|+.++.+|++.|.
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~ 35 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQ 35 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchH
Confidence 3579999999999999999999999999999997
No 86
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.01 E-value=2.9e-10 Score=67.89 Aligned_cols=83 Identities=19% Similarity=0.395 Sum_probs=52.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCcccccee--------------------------eec-----ccCCEEEEEeeCC
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAI--------------------------FFK-----KYPNVLIFTTSNL 66 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~~--------------------------~~~-----~~~~~~~~~~~n~ 66 (105)
.|+|.|||||||||+++.||+.++.++++.+.+ .+. .....+++.. .+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ii~g-~~ 79 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLIREPGWIERDDDEREYIDADIDLLDDILEQLQNKPDNDNWIIDG-SY 79 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHCHGCTTCCHHHHHHHHHHHHHHHHHHETTT--EEEEEC-CS
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceEEeccccccCcchhhHHHHHHHHHHHHHHhhhccCCCCeEEEeC-CC
Confidence 489999999999999999999999887665541 000 0112233333 32
Q ss_pred CCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 67 TGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 67 ~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
....+. .....+..+++..|....+.+++++..+.
T Consensus 80 ~~~~~~-~~~~~~~~i~l~~~~~~~~~~~~~R~~~~ 114 (121)
T PF13207_consen 80 ESEMEI-RLPEFDHVIYLDAPDEECRERRLKRRLRR 114 (121)
T ss_dssp CHCCHS-CCHHGGCEEEEEEEEHHHHHHHHHHHHHH
T ss_pred ccchhh-hhhcCCEEEEEECCCHHHHHHHHHHHhHH
Confidence 222222 22344677888888777888888887653
No 87
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.00 E-value=2.9e-10 Score=76.38 Aligned_cols=48 Identities=21% Similarity=0.356 Sum_probs=41.0
Q ss_pred CCCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccc
Q psy4924 1 MKFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQ 48 (105)
Q Consensus 1 ~~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~ 48 (105)
+.|++..+.+++ ++.|..+.|.||+|||||||++++++.+......+.
T Consensus 10 ~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~ 60 (258)
T COG1120 10 FGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL 60 (258)
T ss_pred EEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEE
Confidence 357888888888 889999999999999999999999998886654433
No 88
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.00 E-value=1.9e-09 Score=81.44 Aligned_cols=84 Identities=18% Similarity=0.328 Sum_probs=59.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCccccce---------------------------e-----------------ee
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA---------------------------I-----------------FF 52 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~---------------------------~-----------------~~ 52 (105)
..++|+||||+||||+|+++++..+.++..++. + ..
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~ 132 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAGVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPW 132 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhhhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHH
Confidence 479999999999999999999998876654332 0 11
Q ss_pred cccCCEEEEEee--CCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 53 KKYPNVLIFTTS--NLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 53 ~~~~~~~~~~~~--n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
.+...++++++| |....++.++.+|+. .+.++.++.+++..++++.+.
T Consensus 133 lE~g~IiLI~aTTenp~~~l~~aL~SR~~-v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 133 VENGTITLIGATTENPYFEVNKALVSRSR-LFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred hcCceEEEEEecCCChHhhhhhHhhcccc-ceecCCCCHHHHHHHHHHHHH
Confidence 122345555554 333567788888875 466777888999999988876
No 89
>PLN03025 replication factor C subunit; Provisional
Probab=98.99 E-value=3.9e-09 Score=72.99 Aligned_cols=84 Identities=24% Similarity=0.186 Sum_probs=56.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCc-----cccce------------------------------------------
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRL-----QTPQA------------------------------------------ 49 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~~~-----~~~~~------------------------------------------ 49 (105)
..++|+||||+||||+|+++|+++.++. .+...
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~ 114 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG 114 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH
Confidence 4699999999999999999999974321 11100
Q ss_pred ------eeecc-cCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 50 ------IFFKK-YPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 50 ------~~~~~-~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
..++. .....++.++|....+.+++.+|+. .+.+..++.+++...+.+..+
T Consensus 115 aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~-~i~f~~l~~~~l~~~L~~i~~ 172 (319)
T PLN03025 115 AQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA-IVRFSRLSDQEILGRLMKVVE 172 (319)
T ss_pred HHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh-cccCCCCCHHHHHHHHHHHHH
Confidence 01222 1234456667777777777888885 556777778887777766543
No 90
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.98 E-value=4e-09 Score=76.28 Aligned_cols=82 Identities=15% Similarity=0.201 Sum_probs=58.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCc------------------------cccce------------------------
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIRL------------------------QTPQA------------------------ 49 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~~------------------------~~~~~------------------------ 49 (105)
.++|+||+|+||||+|+.+|+.+++.. +.++.
T Consensus 42 a~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~ 121 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGK 121 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCC
Confidence 489999999999999999999998742 11111
Q ss_pred ---------------------eeecc-cCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHH
Q psy4924 50 ---------------------IFFKK-YPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCV 100 (105)
Q Consensus 50 ---------------------~~~~~-~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~ 100 (105)
..+++ ...++++.+|+.+..+.+.+++|+... .+..++.++....+.+.+
T Consensus 122 ~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~-~f~~ls~~~i~~~L~~i~ 193 (484)
T PRK14956 122 YKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDF-IFKKVPLSVLQDYSEKLC 193 (484)
T ss_pred CEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhhee-eecCCCHHHHHHHHHHHH
Confidence 02333 356777888888899999999998654 445555666666665544
No 91
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.98 E-value=5.4e-09 Score=75.03 Aligned_cols=30 Identities=33% Similarity=0.651 Sum_probs=26.2
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
+..++.++|+||||+|||++|+.+|..+..
T Consensus 191 L~~~~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 191 LTIKKNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred HhcCCCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 335788999999999999999999998864
No 92
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.98 E-value=4.6e-09 Score=69.24 Aligned_cols=86 Identities=14% Similarity=0.142 Sum_probs=52.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCC---Cccccce--------------------e----------------eeccc
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI---RLQTPQA--------------------I----------------FFKKY 55 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~---~~~~~~~--------------------~----------------~~~~~ 55 (105)
.++.++|+||+|||||||+++++++... +...++. + .....
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~ 120 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLAFDFDPEAELYAVDDVERLDDAQQIALFNLFNRVRAH 120 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHHHhhcccCCEEEEeChhhcCchHHHHHHHHHHHHHHc
Confidence 4568999999999999999999987611 1111110 0 11222
Q ss_pred CCEEEEEeeCCC---CCCCHHhhccc--ceEEEeCCCCHHHHHHHHHHHH
Q psy4924 56 PNVLIFTTSNLT---GAIDLAFLDRA--DIKQYIGFPSAAAIFNIFSSCV 100 (105)
Q Consensus 56 ~~~~~~~~~n~~---~~~d~~~~~r~--~~~~~~~~~~~~~~~~i~~~~~ 100 (105)
...+++.+++.+ ..+...+.+|+ ...+.++.|+.+....++.+..
T Consensus 121 ~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 121 GQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred CCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 333344444332 13445556676 4788888888877777776654
No 93
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.97 E-value=8.6e-09 Score=71.81 Aligned_cols=44 Identities=11% Similarity=0.197 Sum_probs=35.2
Q ss_pred CCEEEEEeeCCCC-CCCHHhhcccceEEEeCCCCH-HHHHHHHHHH
Q psy4924 56 PNVLIFTTSNLTG-AIDLAFLDRADIKQYIGFPSA-AAIFNIFSSC 99 (105)
Q Consensus 56 ~~~~~~~~~n~~~-~~d~~~~~r~~~~~~~~~~~~-~~~~~i~~~~ 99 (105)
.++++++++|..+ .+.+++++||.+.+.+++|.. +++.+++.+.
T Consensus 170 ~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~ 215 (334)
T PRK13407 170 ARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRR 215 (334)
T ss_pred CCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHh
Confidence 4678888888644 688899999999999999955 7777777764
No 94
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.97 E-value=2.5e-09 Score=77.01 Aligned_cols=85 Identities=19% Similarity=0.295 Sum_probs=56.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCC---Cccccce----------------------------e------e--------
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSI---RLQTPQA----------------------------I------F-------- 51 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~---~~~~~~~----------------------------~------~-------- 51 (105)
++++||||+|+|||||++++++++.. .+..+.. + .
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~k~~~q 221 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGATQ 221 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcCChhhH
Confidence 57999999999999999999987642 2111110 0 0
Q ss_pred ---------ecccCCEEEEEeeCC-C---CCCCHHhhcccc--eEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 52 ---------FKKYPNVLIFTTSNL-T---GAIDLAFLDRAD--IKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 52 ---------~~~~~~~~~~~~~n~-~---~~~d~~~~~r~~--~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
+...... ++.+++. + ..++..+.+||. +.+.+..|+.+.+..++.+..+.
T Consensus 222 eelf~l~N~l~~~~k~-IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~ 286 (445)
T PRK12422 222 EEFFHTFNSLHTEGKL-IVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEA 286 (445)
T ss_pred HHHHHHHHHHHHCCCc-EEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 1111223 3444443 3 346677788985 78888889999999999876653
No 95
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.96 E-value=5.7e-09 Score=62.97 Aligned_cols=26 Identities=54% Similarity=0.870 Sum_probs=24.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
.++.++++||+|+|||++++.+++.+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999988
No 96
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.95 E-value=8.3e-09 Score=78.34 Aligned_cols=86 Identities=24% Similarity=0.378 Sum_probs=65.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCccccce------------------------------------------------
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA------------------------------------------------ 49 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~------------------------------------------------ 49 (105)
.++|+||||+|||.+|+++|..++.+++..+.
T Consensus 490 ~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhh
Confidence 58999999999999999999999877653331
Q ss_pred ---------eeec------------ccCCEEEEEeeCCC-------------------------CCCCHHhhcccceEEE
Q psy4924 50 ---------IFFK------------KYPNVLIFTTSNLT-------------------------GAIDLAFLDRADIKQY 83 (105)
Q Consensus 50 ---------~~~~------------~~~~~~~~~~~n~~-------------------------~~~d~~~~~r~~~~~~ 83 (105)
..++ ...+.++++|||.- ....+.++.|+|.++.
T Consensus 570 ~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~ 649 (758)
T PRK11034 570 HPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIW 649 (758)
T ss_pred hHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEE
Confidence 0011 12466789998832 1244678889998888
Q ss_pred eCCCCHHHHHHHHHHHHHHh
Q psy4924 84 IGFPSAAAIFNIFSSCVEEL 103 (105)
Q Consensus 84 ~~~~~~~~~~~i~~~~~~~l 103 (105)
+...+.+++.+|++..+.++
T Consensus 650 f~~L~~~~l~~I~~~~l~~~ 669 (758)
T PRK11034 650 FDHLSTDVIHQVVDKFIVEL 669 (758)
T ss_pred cCCCCHHHHHHHHHHHHHHH
Confidence 89899999999998887765
No 97
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.94 E-value=7.5e-10 Score=77.30 Aligned_cols=46 Identities=28% Similarity=0.336 Sum_probs=39.0
Q ss_pred CCCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccc
Q psy4924 1 MKFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQT 46 (105)
Q Consensus 1 ~~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~ 46 (105)
|.|++..+.+++ +..|..+.|.|||||||||++|+||.........
T Consensus 13 k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~ 61 (352)
T COG3842 13 KSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGE 61 (352)
T ss_pred eecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 568877788777 8889999999999999999999999877665543
No 98
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.93 E-value=7.5e-10 Score=76.90 Aligned_cols=48 Identities=25% Similarity=0.320 Sum_probs=38.1
Q ss_pred CCCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccc
Q psy4924 1 MKFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQ 48 (105)
Q Consensus 1 ~~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~ 48 (105)
|.|++..+.+++ +..|..+.|.|||||||||++++||........++.
T Consensus 11 K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~ 61 (338)
T COG3839 11 KSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL 61 (338)
T ss_pred EEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 456665456656 888999999999999999999999988876555433
No 99
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.92 E-value=6.8e-09 Score=79.80 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=35.4
Q ss_pred CEEEEEeeCCC-----CCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 57 NVLIFTTSNLT-----GAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 57 ~~~~~~~~n~~-----~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
.+.+|++|+.. ...|+++.+||.. +.++.|+.++...+++.....
T Consensus 302 ~i~~IgaTt~~e~r~~~~~d~al~rRf~~-i~v~~p~~~~~~~iL~~~~~~ 351 (852)
T TIGR03346 302 ELHCIGATTLDEYRKYIEKDAALERRFQP-VFVDEPTVEDTISILRGLKER 351 (852)
T ss_pred ceEEEEeCcHHHHHHHhhcCHHHHhcCCE-EEeCCCCHHHHHHHHHHHHHH
Confidence 46678888765 3579999999985 689999999998888766443
No 100
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.90 E-value=1.3e-08 Score=74.27 Aligned_cols=84 Identities=18% Similarity=0.248 Sum_probs=60.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCccc----------------------------cce-------------------
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQT----------------------------PQA------------------- 49 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~~~~~----------------------------~~~------------------- 49 (105)
..++|+||+|+||||+|+++|+.+++.... ++.
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~ 123 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYK 123 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhc
Confidence 469999999999999999999999874210 000
Q ss_pred --------------------------eeec-ccCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 50 --------------------------IFFK-KYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 50 --------------------------~~~~-~~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
..++ ..+.+.++.+|+..+.+...+.+|+. .+.+..++.+++...+++.++
T Consensus 124 P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~-~~ef~~ls~~el~~~L~~i~~ 201 (507)
T PRK06645 124 PLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQ-RYDLRRLSFEEIFKLLEYITK 201 (507)
T ss_pred cccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcce-EEEccCCCHHHHHHHHHHHHH
Confidence 0122 23456667777777788888888884 556777788888887776654
No 101
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.90 E-value=1e-08 Score=67.23 Aligned_cols=28 Identities=29% Similarity=0.468 Sum_probs=24.5
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
..+..++|+||+||||||+++++++...
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~ 63 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAE 63 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3467899999999999999999998764
No 102
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.90 E-value=1e-08 Score=77.70 Aligned_cols=86 Identities=29% Similarity=0.412 Sum_probs=64.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCccccce------------------------------------------------
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA------------------------------------------------ 49 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~------------------------------------------------ 49 (105)
.++|+||+|+|||++|+++|..++.++...+.
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhc
Confidence 48999999999999999999999876543321
Q ss_pred ---------eee------------cccCCEEEEEeeCCCC-------------------------CCCHHhhcccceEEE
Q psy4924 50 ---------IFF------------KKYPNVLIFTTSNLTG-------------------------AIDLAFLDRADIKQY 83 (105)
Q Consensus 50 ---------~~~------------~~~~~~~~~~~~n~~~-------------------------~~d~~~~~r~~~~~~ 83 (105)
..+ ....+.++++|+|... ...+.++.|++..+.
T Consensus 566 ~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~ 645 (731)
T TIGR02639 566 HPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIH 645 (731)
T ss_pred CHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEE
Confidence 000 1124567888887631 135567789998888
Q ss_pred eCCCCHHHHHHHHHHHHHHh
Q psy4924 84 IGFPSAAAIFNIFSSCVEEL 103 (105)
Q Consensus 84 ~~~~~~~~~~~i~~~~~~~l 103 (105)
+...+.+++..|+++.++++
T Consensus 646 F~pLs~e~l~~Iv~~~L~~l 665 (731)
T TIGR02639 646 FNPLSEEVLEKIVQKFVDEL 665 (731)
T ss_pred cCCCCHHHHHHHHHHHHHHH
Confidence 88889999999999988764
No 103
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.90 E-value=4e-09 Score=69.16 Aligned_cols=79 Identities=20% Similarity=0.301 Sum_probs=51.4
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccceeeecccCCEEEEEeeC-CCCCCCHHhhc-
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSN-LTGAIDLAFLD- 76 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~n-~~~~~d~~~~~- 76 (105)
.|++..+++++ ++......|.||+||||||++|++-+.....-.... .+.+.+...| +...+|..-+|
T Consensus 16 yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~-------~G~v~~~g~ni~~~~~d~~~lRr 88 (253)
T COG1117 16 YYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARV-------EGEVLLDGKNIYDPKVDVVELRR 88 (253)
T ss_pred EECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceE-------EEEEEECCeeccCCCCCHHHHHH
Confidence 47888888888 888999999999999999999999876653211100 1122233322 23355665554
Q ss_pred ccceEEEeCCC
Q psy4924 77 RADIKQYIGFP 87 (105)
Q Consensus 77 r~~~~~~~~~~ 87 (105)
|..+++.-+.|
T Consensus 89 ~vGMVFQkPnP 99 (253)
T COG1117 89 RVGMVFQKPNP 99 (253)
T ss_pred HheeeccCCCC
Confidence 56776665555
No 104
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.90 E-value=1.3e-09 Score=72.58 Aligned_cols=45 Identities=24% Similarity=0.364 Sum_probs=39.0
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQT 46 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~ 46 (105)
.|+...+++++ +..|..+.|.||||||||||++.+|.........
T Consensus 12 ~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~ 59 (248)
T COG1116 12 SFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGE 59 (248)
T ss_pred EeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 56777777777 8899999999999999999999999988776655
No 105
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.90 E-value=2.1e-09 Score=67.65 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=32.2
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
.++..++|+|+|||||||+++.+|..++.++++.+.
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~ 37 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDH 37 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChH
Confidence 457789999999999999999999999998887664
No 106
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.89 E-value=6.8e-09 Score=76.91 Aligned_cols=85 Identities=15% Similarity=0.202 Sum_probs=56.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCC-----Cccccce----------------------------e-------------
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSI-----RLQTPQA----------------------------I------------- 50 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~-----~~~~~~~----------------------------~------------- 50 (105)
..++|||++|+|||||++++++++.. .+..+.. +
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke~ 394 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKES 394 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCHH
Confidence 46999999999999999999998742 1111111 0
Q ss_pred ----------eecccCCEEEEEeeCCC----CCCCHHhhccc--ceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 51 ----------FFKKYPNVLIFTTSNLT----GAIDLAFLDRA--DIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 51 ----------~~~~~~~~~~~~~~n~~----~~~d~~~~~r~--~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
.+...... ++.+++.+ ..++..+.+|| .+.+.+..|+.+.+..|+.....+
T Consensus 395 tqeeLF~l~N~l~e~gk~-IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~ 461 (617)
T PRK14086 395 TQEEFFHTFNTLHNANKQ-IVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQ 461 (617)
T ss_pred HHHHHHHHHHHHHhcCCC-EEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHh
Confidence 11111222 34455543 34667777887 677788999999999999887653
No 107
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.89 E-value=8.9e-09 Score=79.11 Aligned_cols=43 Identities=9% Similarity=0.086 Sum_probs=33.9
Q ss_pred CEEEEEeeCCC-----CCCCHHhhcccceEEEeCCCCHHHHHHHHHHHH
Q psy4924 57 NVLIFTTSNLT-----GAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCV 100 (105)
Q Consensus 57 ~~~~~~~~n~~-----~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~ 100 (105)
.+.+|++|+.. ...|+++.+||. .+.++.|+.++...|+....
T Consensus 316 ~l~~IgaTT~~e~~~~~~~d~AL~rRf~-~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 316 ELRTIAATTWAEYKKYFEKDPALTRRFQ-VVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred CeEEEEecCHHHHhhhhhccHHHHHhCe-EEEeCCCCHHHHHHHHHHHH
Confidence 46788888763 458999999997 67999999999888865443
No 108
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.89 E-value=2.9e-08 Score=69.27 Aligned_cols=43 Identities=14% Similarity=0.161 Sum_probs=34.7
Q ss_pred CCEEEEEeeCCCC-CCCHHhhcccceEEEeCCCCH-HHHHHHHHH
Q psy4924 56 PNVLIFTTSNLTG-AIDLAFLDRADIKQYIGFPSA-AAIFNIFSS 98 (105)
Q Consensus 56 ~~~~~~~~~n~~~-~~d~~~~~r~~~~~~~~~~~~-~~~~~i~~~ 98 (105)
.++++++++|..+ .+.+++++||.+.+.+++|.. +++.+++++
T Consensus 173 ~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~ 217 (337)
T TIGR02030 173 ARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVER 217 (337)
T ss_pred CCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHh
Confidence 4577888887654 688899999999999999965 677777776
No 109
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.88 E-value=1.3e-08 Score=76.97 Aligned_cols=82 Identities=21% Similarity=0.252 Sum_probs=59.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCc------------------------cccce------------------------
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIRL------------------------QTPQA------------------------ 49 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~~------------------------~~~~~------------------------ 49 (105)
.++|+||+|+||||+++++++.+++.. ++++.
T Consensus 40 AyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr 119 (830)
T PRK07003 40 AYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDAR 119 (830)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCC
Confidence 579999999999999999999998631 11111
Q ss_pred ---------------------eeecc-cCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHH
Q psy4924 50 ---------------------IFFKK-YPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCV 100 (105)
Q Consensus 50 ---------------------~~~~~-~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~ 100 (105)
..+++ ...+.+|.+|+.++.+...+++|+. .+.+...+.+++...+.+.+
T Consensus 120 ~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq-~f~Fk~Ls~eeIv~~L~~Il 191 (830)
T PRK07003 120 FKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCL-QFNLKQMPAGHIVSHLERIL 191 (830)
T ss_pred ceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheE-EEecCCcCHHHHHHHHHHHH
Confidence 02333 3467788888888999888999994 55666667777776666654
No 110
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.88 E-value=2.1e-08 Score=70.59 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=30.6
Q ss_pred CCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHH
Q psy4924 56 PNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCV 100 (105)
Q Consensus 56 ~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~ 100 (105)
+.+.++.+++.++.+...+.+|+. .+.+..++.+++...+.+.+
T Consensus 148 ~~~~fIl~t~~~~~l~~tI~SRc~-~~~~~~l~~~el~~~L~~~~ 191 (363)
T PRK14961 148 QHIKFILATTDVEKIPKTILSRCL-QFKLKIISEEKIFNFLKYIL 191 (363)
T ss_pred CCeEEEEEcCChHhhhHHHHhhce-EEeCCCCCHHHHHHHHHHHH
Confidence 344556666666778777888884 56777778888777766644
No 111
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.88 E-value=3e-08 Score=72.55 Aligned_cols=45 Identities=13% Similarity=0.143 Sum_probs=34.0
Q ss_pred CCEEEEEeeCCCC-------------CCCHHhhcccceEEEe-CCCCHHHHHHHHHHHH
Q psy4924 56 PNVLIFTTSNLTG-------------AIDLAFLDRADIKQYI-GFPSAAAIFNIFSSCV 100 (105)
Q Consensus 56 ~~~~~~~~~n~~~-------------~~d~~~~~r~~~~~~~-~~~~~~~~~~i~~~~~ 100 (105)
.+..+++++|+.. .+++++++|||+...+ +.|+.+....+.++.+
T Consensus 342 ~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 342 ARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred CCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHH
Confidence 4567889999763 5899999999986554 7788887777776643
No 112
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.86 E-value=8.6e-09 Score=63.20 Aligned_cols=75 Identities=20% Similarity=0.367 Sum_probs=51.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCcccccee---------------------------eecccCCEEEEEeeCCCCCCC
Q psy4924 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAI---------------------------FFKKYPNVLIFTTSNLTGAID 71 (105)
Q Consensus 19 ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~n~~~~~d 71 (105)
+.+.|+|||||||+++.++..++.++++.+.+ .+...+.+++.+.. . +
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~Vidg~~-~----~ 76 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGKLASEVAAIPEVRKALDERQRELAKKPGIVLEGRD-I----G 76 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHHHHHHHHhcccHhHHHHHHHHHHHHhhCCCEEEEeee-e----e
Confidence 78999999999999999999999999876631 12223444443322 1 1
Q ss_pred HHhhcccceEEEeCCCCHHHHHHHHHH
Q psy4924 72 LAFLDRADIKQYIGFPSAAAIFNIFSS 98 (105)
Q Consensus 72 ~~~~~r~~~~~~~~~~~~~~~~~i~~~ 98 (105)
....+.+++.+++..|......++..+
T Consensus 77 ~~~~~~~~~~i~l~~~~~~r~~R~~~r 103 (147)
T cd02020 77 TVVFPDADLKIFLTASPEVRAKRRAKQ 103 (147)
T ss_pred eEEcCCCCEEEEEECCHHHHHHHHHHH
Confidence 112345788899999977776777664
No 113
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.86 E-value=1.4e-08 Score=75.88 Aligned_cols=84 Identities=15% Similarity=0.201 Sum_probs=57.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCc------------------------cccce-----------------------
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRL------------------------QTPQA----------------------- 49 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~~~------------------------~~~~~----------------------- 49 (105)
..++|+||+|+||||+|+++|+.+++.. +.++.
T Consensus 38 HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~g 117 (702)
T PRK14960 38 HAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQG 117 (702)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcC
Confidence 4679999999999999999999998732 11111
Q ss_pred ----------------------eeecc-cCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 50 ----------------------IFFKK-YPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 50 ----------------------~~~~~-~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
..++. .+.+.++.+++.+..+...+++|+. .+.+..++.+++...+.+.++
T Consensus 118 k~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq-~feFkpLs~eEI~k~L~~Il~ 191 (702)
T PRK14960 118 RFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCL-QFTLRPLAVDEITKHLGAILE 191 (702)
T ss_pred CcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhh-eeeccCCCHHHHHHHHHHHHH
Confidence 02222 2445667777777778888888885 445666777777666665543
No 114
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.86 E-value=1.3e-08 Score=74.17 Aligned_cols=29 Identities=41% Similarity=0.605 Sum_probs=24.9
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
...+..++++||||+|||++++.++..+.
T Consensus 207 a~~G~~llliG~~GsGKTtLak~L~gllp 235 (506)
T PRK09862 207 AAGGHNLLLIGPPGTGKTMLASRINGLLP 235 (506)
T ss_pred ccCCcEEEEECCCCCcHHHHHHHHhccCC
Confidence 45678899999999999999999986554
No 115
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.86 E-value=1.6e-08 Score=73.22 Aligned_cols=29 Identities=24% Similarity=0.438 Sum_probs=25.5
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
...+..++|.||||+|||++|++++...+
T Consensus 36 alag~hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 36 ALSGESVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred HccCCCEEEECCCChhHHHHHHHHHHHhc
Confidence 44688999999999999999999998654
No 116
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.85 E-value=1e-08 Score=76.47 Aligned_cols=82 Identities=18% Similarity=0.227 Sum_probs=58.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC-----------------------------ccccce-------------------
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIR-----------------------------LQTPQA------------------- 49 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~-----------------------------~~~~~~------------------- 49 (105)
.++|+||+|+||||+++.+++.+++. +++++.
T Consensus 40 A~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~ 119 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYA 119 (700)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhc
Confidence 57999999999999999999999872 111111
Q ss_pred --------------------------eeecc-cCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHH
Q psy4924 50 --------------------------IFFKK-YPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCV 100 (105)
Q Consensus 50 --------------------------~~~~~-~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~ 100 (105)
..+++ ..++.+|.+|+.++.+...+++|+. .+.+..++.++....+.+.+
T Consensus 120 P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq-~f~f~~ls~eei~~~L~~Il 196 (700)
T PRK12323 120 PTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCL-QFNLKQMPPGHIVSHLDAIL 196 (700)
T ss_pred hhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHH-hcccCCCChHHHHHHHHHHH
Confidence 13333 3457778888888899998999984 44666776776666555443
No 117
>KOG0989|consensus
Probab=98.85 E-value=1.4e-08 Score=69.55 Aligned_cols=28 Identities=46% Similarity=0.590 Sum_probs=25.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
...+++|||||+|||+.++++|+++.++
T Consensus 57 lp~~LFyGPpGTGKTStalafar~L~~~ 84 (346)
T KOG0989|consen 57 LPHYLFYGPPGTGKTSTALAFARALNCE 84 (346)
T ss_pred CceEEeeCCCCCcHhHHHHHHHHHhcCc
Confidence 5679999999999999999999999983
No 118
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.84 E-value=2.1e-08 Score=74.89 Aligned_cols=81 Identities=16% Similarity=0.226 Sum_probs=59.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCc------------------------cccce-------------------------
Q psy4924 19 VLLHGPPGTGKTSLCKAVAQKLSIRL------------------------QTPQA------------------------- 49 (105)
Q Consensus 19 ill~Gp~GsGKT~l~~~la~~~~~~~------------------------~~~~~------------------------- 49 (105)
++|+||+|+||||+|+++|+.+++.. +.++.
T Consensus 41 yLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~ 120 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRF 120 (647)
T ss_pred EEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCC
Confidence 79999999999999999999998842 11111
Q ss_pred --------------------eeecc-cCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHH
Q psy4924 50 --------------------IFFKK-YPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCV 100 (105)
Q Consensus 50 --------------------~~~~~-~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~ 100 (105)
..+++ .+.+.++.+|+.+..+...+++|+ ..+.+..++.++....+.+.+
T Consensus 121 KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il 191 (647)
T PRK07994 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHIL 191 (647)
T ss_pred EEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHH
Confidence 02333 245667777777888888888897 566777787888777776654
No 119
>PRK00625 shikimate kinase; Provisional
Probab=98.84 E-value=5e-09 Score=66.85 Aligned_cols=32 Identities=38% Similarity=0.499 Sum_probs=29.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
.++|+|.|||||||+++.+|+.++.++++.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~ 33 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDD 33 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhH
Confidence 48999999999999999999999999987774
No 120
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.84 E-value=7.7e-09 Score=65.82 Aligned_cols=34 Identities=29% Similarity=0.619 Sum_probs=30.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
...++|+||+||||||+++.++..++.++++.+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4679999999999999999999999999887764
No 121
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.82 E-value=7.8e-09 Score=69.41 Aligned_cols=43 Identities=23% Similarity=0.468 Sum_probs=37.2
Q ss_pred CCCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 1 MKFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 1 ~~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
|.|++..+.+++ ++.|..+++.|||||||||++++|-+.+...
T Consensus 9 k~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept 54 (309)
T COG1125 9 KRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT 54 (309)
T ss_pred hhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC
Confidence 568877777777 8899999999999999999999998877544
No 122
>PRK06547 hypothetical protein; Provisional
Probab=98.82 E-value=4.7e-08 Score=62.32 Aligned_cols=35 Identities=31% Similarity=0.426 Sum_probs=29.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
....+.+.|++||||||+++.+++.++.+++..+.
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~ 48 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDD 48 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccc
Confidence 34578888999999999999999999988776654
No 123
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.82 E-value=1.9e-08 Score=73.60 Aligned_cols=27 Identities=30% Similarity=0.536 Sum_probs=24.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
..++|+||+|+||||+|+++|+.+++.
T Consensus 39 ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 39 HAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred eeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 357999999999999999999999875
No 124
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.81 E-value=9.4e-09 Score=68.93 Aligned_cols=47 Identities=26% Similarity=0.393 Sum_probs=38.0
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQ 48 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~ 48 (105)
.|++..+++++ ++.|..+.|.||+|+|||||++++...+......+.
T Consensus 13 ~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~ 62 (254)
T COG1121 13 SYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIK 62 (254)
T ss_pred EECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEE
Confidence 46644688888 888999999999999999999999987765544433
No 125
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.81 E-value=1.6e-08 Score=67.09 Aligned_cols=44 Identities=18% Similarity=0.392 Sum_probs=36.8
Q ss_pred CCC-ccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 1 MKF-SHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 1 ~~~-~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
+.| ++..+++++ ++.|..+.|.||+|+|||||+|++....+...
T Consensus 11 k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~ 58 (258)
T COG3638 11 KTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTS 58 (258)
T ss_pred eecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCc
Confidence 356 677777777 88999999999999999999999998665443
No 126
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.81 E-value=3.5e-09 Score=69.28 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=33.5
Q ss_pred ccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 6 SKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 6 ~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
..+.+++ +.+|..+.|.||+|||||||+++++..+.....
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G 59 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSG 59 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCce
Confidence 4567766 889999999999999999999999988764433
No 127
>PRK03839 putative kinase; Provisional
Probab=98.81 E-value=4.8e-09 Score=66.90 Aligned_cols=32 Identities=31% Similarity=0.579 Sum_probs=29.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
.++|.|+|||||||+++.+|+.++.++++.+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~ 33 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTE 33 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehhh
Confidence 48999999999999999999999999987664
No 128
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.81 E-value=3.9e-08 Score=72.38 Aligned_cols=82 Identities=22% Similarity=0.231 Sum_probs=56.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCc------------------------cccce------------------------
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIRL------------------------QTPQA------------------------ 49 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~~------------------------~~~~~------------------------ 49 (105)
.++|+||+|+||||+|+.+|+.+.+.. +.++.
T Consensus 40 a~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~ 119 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGR 119 (546)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCC
Confidence 478999999999999999999988621 11111
Q ss_pred ---------------------eeeccc-CCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHH
Q psy4924 50 ---------------------IFFKKY-PNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCV 100 (105)
Q Consensus 50 ---------------------~~~~~~-~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~ 100 (105)
..+++. +.+.++.+|+....+.+.+.+|+ ..+.+..++.+++...+.+.+
T Consensus 120 ~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il 191 (546)
T PRK14957 120 YKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIIL 191 (546)
T ss_pred cEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHH
Confidence 023332 34556666666777777788888 455677777777776666544
No 129
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.80 E-value=1.2e-08 Score=66.61 Aligned_cols=28 Identities=43% Similarity=0.631 Sum_probs=20.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
.+.+++++||||||||++|+.+...+..
T Consensus 21 G~h~lLl~GppGtGKTmlA~~l~~lLP~ 48 (206)
T PF01078_consen 21 GGHHLLLIGPPGTGKTMLARRLPSLLPP 48 (206)
T ss_dssp CC--EEEES-CCCTHHHHHHHHHHCS--
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHhCCC
Confidence 3568999999999999999999877654
No 130
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=5e-08 Score=72.67 Aligned_cols=82 Identities=13% Similarity=0.229 Sum_probs=57.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCc-----------------------------cccce-------------------
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIRL-----------------------------QTPQA------------------- 49 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~~-----------------------------~~~~~------------------- 49 (105)
.++|+||+|+||||+++++|+.++|.. +.++.
T Consensus 40 a~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~ 119 (618)
T PRK14951 40 AYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYK 119 (618)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhC
Confidence 479999999999999999999998731 11111
Q ss_pred --------------------------eeecc-cCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHH
Q psy4924 50 --------------------------IFFKK-YPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCV 100 (105)
Q Consensus 50 --------------------------~~~~~-~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~ 100 (105)
..+++ .+.+.++.+|+.+..+...+++|+ ..+.+..++.+++...+.+.+
T Consensus 120 p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~ 196 (618)
T PRK14951 120 PVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVL 196 (618)
T ss_pred cccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHH
Confidence 03333 245566777777777888888888 455667777777766666544
No 131
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.80 E-value=6e-09 Score=62.30 Aligned_cols=29 Identities=45% Similarity=0.791 Sum_probs=26.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
+..++|+||||||||++++.++..+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~ 30 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG 30 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC
Confidence 57899999999999999999999998653
No 132
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.80 E-value=3.4e-09 Score=70.14 Aligned_cols=43 Identities=21% Similarity=0.433 Sum_probs=35.3
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
.|++..+.+++ +.+|..+.|.||+|||||||+++++..+....
T Consensus 9 ~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~ 54 (235)
T cd03261 9 SFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDS 54 (235)
T ss_pred EECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 45555567776 88999999999999999999999998775443
No 133
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.80 E-value=3.6e-09 Score=68.90 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=34.1
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.|++..+.+++ +.+|..+.|.||+|||||||+++++......
T Consensus 9 ~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~ 53 (210)
T cd03269 9 RFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD 53 (210)
T ss_pred EECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 35555566666 7889999999999999999999999876543
No 134
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.79 E-value=4e-09 Score=68.86 Aligned_cols=43 Identities=23% Similarity=0.390 Sum_probs=35.2
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
.|++..+.+++ +.+|..+.|.||+|||||||+++++.......
T Consensus 8 ~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~ 53 (213)
T cd03235 8 SYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTS 53 (213)
T ss_pred EECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCC
Confidence 45555566766 88999999999999999999999998775433
No 135
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.79 E-value=4e-09 Score=68.42 Aligned_cols=42 Identities=19% Similarity=0.374 Sum_probs=34.8
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.|++..+.+++ +.+|..+.|.||+|+|||||+++++..+...
T Consensus 7 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~ 51 (206)
T TIGR03608 7 KFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD 51 (206)
T ss_pred EECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 45555667776 7889999999999999999999999877543
No 136
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.79 E-value=4.4e-09 Score=68.63 Aligned_cols=43 Identities=21% Similarity=0.353 Sum_probs=35.1
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
.|++..+.+++ +.+|..+.|.||+|||||||+++++.......
T Consensus 9 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~ 54 (213)
T cd03259 9 TYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDS 54 (213)
T ss_pred EeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 45555567766 88899999999999999999999998765433
No 137
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.79 E-value=4.1e-09 Score=68.73 Aligned_cols=44 Identities=25% Similarity=0.377 Sum_probs=35.6
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.|++..+.+++ +.+|..+.|.||+|||||||+++++..+.....
T Consensus 9 ~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G 55 (213)
T cd03301 9 RFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSG 55 (213)
T ss_pred EECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 35555566776 788999999999999999999999988754433
No 138
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.79 E-value=4.1e-08 Score=69.79 Aligned_cols=81 Identities=19% Similarity=0.308 Sum_probs=57.2
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCc-------------------------cccce---------------------
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRL-------------------------QTPQA--------------------- 49 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~-------------------------~~~~~--------------------- 49 (105)
+..++|+||+|+|||++|+.+|+.+.+.. +....
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~ 115 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPST 115 (394)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCccc
Confidence 45699999999999999999999887752 10000
Q ss_pred -----------------------eeecc-cCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHH
Q psy4924 50 -----------------------IFFKK-YPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFS 97 (105)
Q Consensus 50 -----------------------~~~~~-~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~ 97 (105)
..+++ .++..++.+++.++.+.+.+.+|+. .+.++.|+.++....+.
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~-~i~f~~~~~~~i~~~L~ 186 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCR-HVALRTPSVEAVAEVLV 186 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCe-EEECCCCCHHHHHHHHH
Confidence 02333 2344455555557889999999984 66788888888776665
No 139
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.79 E-value=4.9e-09 Score=71.99 Aligned_cols=45 Identities=20% Similarity=0.271 Sum_probs=37.9
Q ss_pred CCCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 1 MKFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 1 ~~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
|.|++..+.+++ +.+|..+.|.||+|+|||||+++++..+.....
T Consensus 1 k~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G 48 (302)
T TIGR01188 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSG 48 (302)
T ss_pred CeeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 567777778877 889999999999999999999999987764433
No 140
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.79 E-value=4.9e-09 Score=68.75 Aligned_cols=43 Identities=28% Similarity=0.417 Sum_probs=35.2
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
.|++..+.+++ +.+|..+.|.||+|||||||+++++.......
T Consensus 9 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~ 54 (222)
T cd03224 9 GYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRS 54 (222)
T ss_pred ecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 46555566666 78899999999999999999999998775443
No 141
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.79 E-value=4.6e-08 Score=71.47 Aligned_cols=45 Identities=11% Similarity=0.119 Sum_probs=32.5
Q ss_pred CCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 56 PNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 56 ~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
+...++.+++.+..+...+.+|+. .+.+..++.+++...+.+.++
T Consensus 145 ~~t~~Il~t~~~~kl~~~I~SRc~-~~~f~~ls~~el~~~L~~i~~ 189 (504)
T PRK14963 145 EHVIFILATTEPEKMPPTILSRTQ-HFRFRRLTEEEIAGKLRRLLE 189 (504)
T ss_pred CCEEEEEEcCChhhCChHHhcceE-EEEecCCCHHHHHHHHHHHHH
Confidence 345666777777888888888886 557777788887777766543
No 142
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.79 E-value=5.9e-09 Score=69.26 Aligned_cols=41 Identities=24% Similarity=0.451 Sum_probs=34.3
Q ss_pred CCc-cccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 2 KFS-HSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 2 ~~~-~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
.|+ +..+.+++ +.+|..+.|.||+|||||||+++|+.....
T Consensus 10 ~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 54 (243)
T TIGR02315 10 VYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP 54 (243)
T ss_pred ecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 455 45577777 888999999999999999999999987654
No 143
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.79 E-value=4.1e-09 Score=67.45 Aligned_cols=45 Identities=24% Similarity=0.328 Sum_probs=35.1
Q ss_pred CCccccccccc--ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccc
Q psy4924 2 KFSHSKVKSNI--ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQT 46 (105)
Q Consensus 2 ~~~~~~~~~~~--~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~ 46 (105)
.|++..+..+. ++++..+.|.||+|+|||||+++++.........
T Consensus 9 ~~~~~~~l~~~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~ 55 (177)
T cd03222 9 RYGVFFLLVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDN 55 (177)
T ss_pred EECCEEEEccCcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcE
Confidence 46665555544 6789999999999999999999999887654433
No 144
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.79 E-value=1.4e-08 Score=73.07 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=22.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.+++||||+|+|||||++++++++.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~ 155 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHH
Confidence 4799999999999999999999863
No 145
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.79 E-value=4.7e-09 Score=68.41 Aligned_cols=42 Identities=26% Similarity=0.446 Sum_probs=34.4
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.|++..+.+++ +.+|..+.|.||+|||||||+++++......
T Consensus 9 ~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~ 53 (213)
T cd03262 9 SFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD 53 (213)
T ss_pred EECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 45555566666 7889999999999999999999999877543
No 146
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.78 E-value=4.5e-09 Score=68.97 Aligned_cols=42 Identities=24% Similarity=0.384 Sum_probs=34.7
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++++..+...
T Consensus 9 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~ 53 (220)
T cd03265 9 KYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT 53 (220)
T ss_pred EECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 45555677766 7889999999999999999999999876543
No 147
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.78 E-value=5.4e-09 Score=68.09 Aligned_cols=42 Identities=26% Similarity=0.460 Sum_probs=34.4
Q ss_pred CCcc--ccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 2 KFSH--SKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 2 ~~~~--~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.|++ ..+.+++ +.+|..+.|.||+|+|||||+++++......
T Consensus 8 ~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~ 54 (211)
T cd03225 8 SYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT 54 (211)
T ss_pred ecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 4554 4567776 7889999999999999999999999876543
No 148
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.78 E-value=5.8e-09 Score=68.94 Aligned_cols=38 Identities=13% Similarity=0.245 Sum_probs=32.8
Q ss_pred cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 7 KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 7 ~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
.+.+++ +.+|..+.|.||+|||||||+++++..+....
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~ 59 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTS 59 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 567776 88999999999999999999999998876443
No 149
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.78 E-value=7e-09 Score=68.32 Aligned_cols=39 Identities=23% Similarity=0.425 Sum_probs=33.8
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++++...
T Consensus 9 ~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 9 YYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 46555677776 8899999999999999999999999987
No 150
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.78 E-value=4.3e-09 Score=69.90 Aligned_cols=44 Identities=27% Similarity=0.393 Sum_probs=36.0
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++++........
T Consensus 11 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 57 (239)
T cd03296 11 RFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSG 57 (239)
T ss_pred EECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 45555677776 889999999999999999999999988754433
No 151
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.78 E-value=4.9e-09 Score=68.09 Aligned_cols=43 Identities=21% Similarity=0.419 Sum_probs=34.8
Q ss_pred CCcc-ccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 2 KFSH-SKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 2 ~~~~-~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
.|++ ..+++++ +.+|..+.|.||+|||||||+++++.......
T Consensus 8 ~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~ 54 (205)
T cd03226 8 SYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESS 54 (205)
T ss_pred EeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc
Confidence 4554 4566666 78899999999999999999999998765433
No 152
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.78 E-value=4.6e-08 Score=75.08 Aligned_cols=82 Identities=18% Similarity=0.196 Sum_probs=57.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCcc------------------------ccce------------------------
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQ------------------------TPQA------------------------ 49 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~~~------------------------~~~~------------------------ 49 (105)
.++|+||+|+||||+|+++|+.+++... .++.
T Consensus 40 AyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk 119 (944)
T PRK14949 40 AYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGR 119 (944)
T ss_pred EEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCC
Confidence 4689999999999999999999988511 0000
Q ss_pred ---------------------eeecc-cCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHH
Q psy4924 50 ---------------------IFFKK-YPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCV 100 (105)
Q Consensus 50 ---------------------~~~~~-~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~ 100 (105)
..+++ ...+.++.+|+.+..+...++.|+. .+.+..++.++....+.+.+
T Consensus 120 ~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq-~f~fkpLs~eEI~~~L~~il 191 (944)
T PRK14949 120 FKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCL-QFNLKSLTQDEIGTQLNHIL 191 (944)
T ss_pred cEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhhe-EEeCCCCCHHHHHHHHHHHH
Confidence 02332 2446667777777788888888884 55667777777776666644
No 153
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.78 E-value=6.2e-09 Score=67.70 Aligned_cols=49 Identities=18% Similarity=0.299 Sum_probs=43.3
Q ss_pred CCCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 1 MKFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 1 ~~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
|.|++..+.+++ +++|+..-+.||+|+|||||+..+++.++.....+..
T Consensus 9 K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i 60 (252)
T COG4604 9 KSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITI 60 (252)
T ss_pred HhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEE
Confidence 468888888888 8999999999999999999999999999988776654
No 154
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.78 E-value=6.7e-09 Score=68.47 Aligned_cols=43 Identities=33% Similarity=0.447 Sum_probs=35.1
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
.|++..+.+++ +.+|..+.|.||+|||||||+++|+.......
T Consensus 16 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~ 61 (225)
T PRK10247 16 LAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTS 61 (225)
T ss_pred eeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC
Confidence 45555567777 88999999999999999999999998765433
No 155
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.77 E-value=5.3e-08 Score=69.23 Aligned_cols=85 Identities=14% Similarity=0.187 Sum_probs=57.2
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCccccce--------------------------------e-------------
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA--------------------------------I------------- 50 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~--------------------------------~------------- 50 (105)
..+++||||+|+|||||+++++++......+... +
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y~~dlllIDDiq~l~gk~~ 192 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKYSLDLLLIDDIQFLAGKER 192 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhhccCeeeechHhHhcCChh
Confidence 5689999999999999999999887754432211 0
Q ss_pred ----------eecccCCEEEEEeeCCCCC---CCHHhhccc--ceEEEeCCCCHHHHHHHHHHHH
Q psy4924 51 ----------FFKKYPNVLIFTTSNLTGA---IDLAFLDRA--DIKQYIGFPSAAAIFNIFSSCV 100 (105)
Q Consensus 51 ----------~~~~~~~~~~~~~~n~~~~---~d~~~~~r~--~~~~~~~~~~~~~~~~i~~~~~ 100 (105)
.+.....-+++.+...|.. +++.+.+|+ .+...+..|+.+.+..++.+..
T Consensus 193 ~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka 257 (408)
T COG0593 193 TQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKA 257 (408)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHH
Confidence 1222233344444444543 445566676 6678888999999998888744
No 156
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.77 E-value=6.5e-09 Score=70.31 Aligned_cols=42 Identities=14% Similarity=0.344 Sum_probs=35.4
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.|++..+.+++ +.+|..+.|.||+|||||||+++|+..+...
T Consensus 33 ~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~ 77 (269)
T cd03294 33 KTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT 77 (269)
T ss_pred hcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 46666677777 8899999999999999999999999887543
No 157
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.77 E-value=6.2e-09 Score=69.01 Aligned_cols=41 Identities=24% Similarity=0.460 Sum_probs=34.4
Q ss_pred CCcc-ccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 2 KFSH-SKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 2 ~~~~-~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
.|++ ..+.+++ +.+|..+.|.||+|||||||+++++..+..
T Consensus 9 ~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 53 (241)
T cd03256 9 TYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP 53 (241)
T ss_pred ecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 4655 5567776 889999999999999999999999987654
No 158
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.77 E-value=6.1e-09 Score=68.24 Aligned_cols=44 Identities=18% Similarity=0.263 Sum_probs=35.4
Q ss_pred CCcc--ccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 2 KFSH--SKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 2 ~~~~--~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.|++ ..+++++ +.+|..+.|.||+|||||||+++++........
T Consensus 9 ~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 57 (220)
T cd03263 9 TYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSG 57 (220)
T ss_pred EeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4554 4577776 888999999999999999999999987754433
No 159
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.77 E-value=1.1e-07 Score=66.65 Aligned_cols=44 Identities=14% Similarity=0.147 Sum_probs=35.6
Q ss_pred CCEEEEEeeCCCC-CCCHHhhcccceEEEeCCCC-HHHHHHHHHHH
Q psy4924 56 PNVLIFTTSNLTG-AIDLAFLDRADIKQYIGFPS-AAAIFNIFSSC 99 (105)
Q Consensus 56 ~~~~~~~~~n~~~-~~d~~~~~r~~~~~~~~~~~-~~~~~~i~~~~ 99 (105)
.+++++++.|..+ .+.+++++||.+.+.+++|. .+...+|+++.
T Consensus 186 ~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~ 231 (350)
T CHL00081 186 ARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQR 231 (350)
T ss_pred CCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhh
Confidence 4567788878654 68899999999999999996 57888888764
No 160
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.77 E-value=6e-09 Score=68.78 Aligned_cols=43 Identities=23% Similarity=0.387 Sum_probs=35.1
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
.|++..+.+++ +.+|..+.|.||+|||||||+++++.......
T Consensus 9 ~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~ 54 (232)
T cd03218 9 RYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDS 54 (232)
T ss_pred EeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 45555567776 78899999999999999999999998765433
No 161
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.77 E-value=5.4e-09 Score=68.95 Aligned_cols=44 Identities=23% Similarity=0.387 Sum_probs=35.7
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.|++..+.+++ +.+|..+.|.||+|||||||+++++..+.....
T Consensus 9 ~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G 55 (230)
T TIGR03410 9 YYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSG 55 (230)
T ss_pred EeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 45555566666 889999999999999999999999988765433
No 162
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.77 E-value=4.9e-09 Score=69.35 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=34.7
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++++..+....
T Consensus 9 ~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~ 54 (236)
T cd03219 9 RFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTS 54 (236)
T ss_pred EECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCC
Confidence 35555566666 78899999999999999999999998765433
No 163
>PRK13947 shikimate kinase; Provisional
Probab=98.77 E-value=8.6e-09 Score=65.02 Aligned_cols=32 Identities=38% Similarity=0.449 Sum_probs=29.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
.++|.|+|||||||+++.+|+.++.++++.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 58999999999999999999999999988775
No 164
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.76 E-value=5.6e-09 Score=68.50 Aligned_cols=40 Identities=25% Similarity=0.327 Sum_probs=33.3
Q ss_pred ccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 6 SKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 6 ~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
..+.+++ +.+|..+.|.||+|||||||+++++........
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 59 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSG 59 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 4567776 889999999999999999999999987654333
No 165
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.76 E-value=5.4e-08 Score=70.80 Aligned_cols=27 Identities=30% Similarity=0.514 Sum_probs=24.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
..++|+||+|+||||+|+.+|+.++|.
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred ceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 469999999999999999999988764
No 166
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.76 E-value=7.4e-09 Score=68.07 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=33.0
Q ss_pred cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 7 KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 7 ~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.+++++ +.+|..+.|.||+|||||||+++++........
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 60 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG 60 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 567776 889999999999999999999999987754433
No 167
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.76 E-value=6e-09 Score=70.01 Aligned_cols=44 Identities=20% Similarity=0.397 Sum_probs=35.6
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.|++..+.+++ +.+|..+.|.||+|||||||+++++........
T Consensus 10 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 56 (255)
T PRK11248 10 DYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHG 56 (255)
T ss_pred EeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 45555566666 888999999999999999999999987754433
No 168
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.76 E-value=6.4e-09 Score=69.09 Aligned_cols=43 Identities=23% Similarity=0.365 Sum_probs=35.3
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
.|++..+.+++ +.+|..+.|.||+|+|||||+++++.......
T Consensus 12 ~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~ 57 (241)
T PRK10895 12 AYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDA 57 (241)
T ss_pred EeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 45555566666 88999999999999999999999998875433
No 169
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.75 E-value=7.4e-09 Score=68.30 Aligned_cols=42 Identities=17% Similarity=0.223 Sum_probs=35.8
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++++......
T Consensus 31 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~ 75 (224)
T cd03220 31 EVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD 75 (224)
T ss_pred hcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 46667777777 8899999999999999999999999876543
No 170
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.75 E-value=9.3e-09 Score=66.07 Aligned_cols=42 Identities=21% Similarity=0.245 Sum_probs=34.7
Q ss_pred Cccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 3 FSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 3 ~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
|++..+++++ +.+|..+.|.||+|||||||+++++.......
T Consensus 2 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~ 46 (190)
T TIGR01166 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQS 46 (190)
T ss_pred CCccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 3555677776 88999999999999999999999998765433
No 171
>PRK14530 adenylate kinase; Provisional
Probab=98.75 E-value=1.1e-08 Score=67.12 Aligned_cols=32 Identities=28% Similarity=0.515 Sum_probs=28.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCcccc
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTP 47 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~ 47 (105)
+..++|.|||||||||+++.||+.++.+++..
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 45799999999999999999999999887743
No 172
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.75 E-value=6.5e-09 Score=65.52 Aligned_cols=42 Identities=24% Similarity=0.358 Sum_probs=34.7
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.|++..+.+++ +.+|..+.|.||+|+|||||+++++......
T Consensus 9 ~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~ 53 (163)
T cd03216 9 RFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD 53 (163)
T ss_pred EECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 45555566666 8899999999999999999999999876543
No 173
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.75 E-value=6.7e-09 Score=69.05 Aligned_cols=41 Identities=22% Similarity=0.317 Sum_probs=34.5
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++++.....
T Consensus 11 ~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 54 (242)
T PRK11124 11 FYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP 54 (242)
T ss_pred EECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 45555677776 889999999999999999999999987654
No 174
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.75 E-value=6.6e-09 Score=69.96 Aligned_cols=43 Identities=21% Similarity=0.341 Sum_probs=35.2
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++|+.......
T Consensus 21 ~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~ 66 (257)
T PRK11247 21 RYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSA 66 (257)
T ss_pred EECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 45555566666 88899999999999999999999998775443
No 175
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.74 E-value=6.5e-09 Score=68.92 Aligned_cols=44 Identities=18% Similarity=0.356 Sum_probs=35.3
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++++........
T Consensus 10 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G 56 (236)
T TIGR03864 10 AYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEG 56 (236)
T ss_pred EECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence 35555566766 889999999999999999999999987654433
No 176
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.74 E-value=1.2e-07 Score=61.74 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=24.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.+..+.|.||+|||||||+++++..++
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 467889999999999999999998876
No 177
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.74 E-value=7.7e-09 Score=67.50 Aligned_cols=39 Identities=28% Similarity=0.428 Sum_probs=32.6
Q ss_pred cccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 5 HSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 5 ~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
+..+.+++ +.+|..+.|.||+|||||||+++++..+...
T Consensus 14 ~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~ 55 (214)
T TIGR02673 14 GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS 55 (214)
T ss_pred CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 34566666 8889999999999999999999999876543
No 178
>KOG0735|consensus
Probab=98.74 E-value=6.5e-08 Score=72.55 Aligned_cols=89 Identities=21% Similarity=0.318 Sum_probs=69.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCcccc----ce-----------------------------------------
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTP----QA----------------------------------------- 49 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~----~~----------------------------------------- 49 (105)
....++|.||+|||||.|+++++.+...+.+.- +.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~ 509 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASA 509 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhcc
Confidence 356799999999999999999999987543311 11
Q ss_pred ------------------------eeecccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHHHHHHh
Q psy4924 50 ------------------------IFFKKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSSCVEEL 103 (105)
Q Consensus 50 ------------------------~~~~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~~~~~l 103 (105)
+....+..+.++++.+..+.+.+.+.+ +|+.++.++.|...++..|+...+++.
T Consensus 510 s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~ 589 (952)
T KOG0735|consen 510 SSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKN 589 (952)
T ss_pred CcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhh
Confidence 133444557889998888888887665 799999999999999999998887653
No 179
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.74 E-value=7.4e-09 Score=66.03 Aligned_cols=42 Identities=26% Similarity=0.509 Sum_probs=34.0
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.|++..+.+++ +.+|..+.|.||+|+|||||+++++......
T Consensus 9 ~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~ 53 (178)
T cd03229 9 RYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD 53 (178)
T ss_pred EECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 35555566666 7889999999999999999999999876543
No 180
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.74 E-value=7.1e-09 Score=67.44 Aligned_cols=42 Identities=21% Similarity=0.386 Sum_probs=34.4
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.|++..+.+++ +.+|..+.|.||+|||||||++.++......
T Consensus 9 ~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~ 53 (208)
T cd03268 9 TYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD 53 (208)
T ss_pred EECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC
Confidence 45555566666 7889999999999999999999999876543
No 181
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.74 E-value=5.9e-09 Score=63.79 Aligned_cols=32 Identities=34% Similarity=0.753 Sum_probs=26.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
.++++|||||||||+++.+++.++..+++.+.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~ 32 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDE 32 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHH
Confidence 37999999999999999999999866655444
No 182
>PRK08233 hypothetical protein; Provisional
Probab=98.74 E-value=9.1e-08 Score=60.69 Aligned_cols=82 Identities=13% Similarity=0.179 Sum_probs=49.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCC-Ccccccee--------------------------------eecccC--CEEE
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI-RLQTPQAI--------------------------------FFKKYP--NVLI 60 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~-~~~~~~~~--------------------------------~~~~~~--~~~~ 60 (105)
+..+.+.|+|||||||+++.|+..++. .....+.. ...... .++
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v- 81 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCPEDICKWIDKGANYSEWVLTPLIKDIQELIAKSNVDYI- 81 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCchhhhhhhhccCChhhhhhHHHHHHHHHHHcCCCceEE-
Confidence 467889999999999999999999862 22111110 000111 222
Q ss_pred EEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHH
Q psy4924 61 FTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSC 99 (105)
Q Consensus 61 ~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~ 99 (105)
+....+. .........++..++++.|....+.++.+|.
T Consensus 82 ivd~~~~-~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~ 119 (182)
T PRK08233 82 IVDYPFA-YLNSEMRQFIDVTIFIDTPLDIAMARRILRD 119 (182)
T ss_pred EEeeehh-hccHHHHHHcCEEEEEcCCHHHHHHHHHHHH
Confidence 3222221 2233344568999999999887777766654
No 183
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.74 E-value=3.6e-08 Score=75.61 Aligned_cols=86 Identities=22% Similarity=0.246 Sum_probs=59.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhC----------CCccccce-------------------------------e---
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLS----------IRLQTPQA-------------------------------I--- 50 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~----------~~~~~~~~-------------------------------~--- 50 (105)
..++++|+||||+|||++++.+|..+. .+++.++. +
T Consensus 199 ~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiD 278 (821)
T CHL00095 199 TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVID 278 (821)
T ss_pred ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 345789999999999999999999874 23333221 0
Q ss_pred ----------------------eecccCCEEEEEeeCCC-----CCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 51 ----------------------FFKKYPNVLIFTTSNLT-----GAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 51 ----------------------~~~~~~~~~~~~~~n~~-----~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
..-....+.+|++|+.. ...|+++.+||.. +.++.|+.++...++.....
T Consensus 279 Eih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~-I~v~ep~~~e~~aILr~l~~ 355 (821)
T CHL00095 279 EVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQP-VYVGEPSVEETIEILFGLRS 355 (821)
T ss_pred cHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCHHHHHHHHhcCHHHHhcceE-EecCCCCHHHHHHHHHHHHH
Confidence 00111346778888765 3578889999986 56788888887777765543
No 184
>PRK13948 shikimate kinase; Provisional
Probab=98.73 E-value=1.8e-08 Score=64.74 Aligned_cols=36 Identities=22% Similarity=0.220 Sum_probs=33.2
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
..+..++|.|++||||||+++.+|..++.++++.+.
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~ 43 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDR 43 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCH
Confidence 456889999999999999999999999999998885
No 185
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.73 E-value=1.1e-08 Score=67.93 Aligned_cols=42 Identities=29% Similarity=0.396 Sum_probs=35.0
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.|+...+++++ +.+|..+.|.||+|||||||+++|+......
T Consensus 30 ~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~ 74 (236)
T cd03267 30 KYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT 74 (236)
T ss_pred ccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC
Confidence 35556677777 8889999999999999999999999876543
No 186
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.73 E-value=1.8e-07 Score=60.45 Aligned_cols=27 Identities=44% Similarity=0.683 Sum_probs=23.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
.|.|.||+||||||+|+.|+..++...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~ 27 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRG 27 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccC
Confidence 378999999999999999999998543
No 187
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.73 E-value=1.7e-08 Score=64.15 Aligned_cols=30 Identities=27% Similarity=0.522 Sum_probs=27.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
++.++|.|||||||||+++.++..++.++.
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~ 31 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWL 31 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCcc
Confidence 678999999999999999999999877654
No 188
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.73 E-value=8.9e-09 Score=69.64 Aligned_cols=42 Identities=24% Similarity=0.358 Sum_probs=35.1
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++++..+...
T Consensus 10 ~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 54 (271)
T PRK13638 10 RYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ 54 (271)
T ss_pred EcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC
Confidence 46655677776 8889999999999999999999999877543
No 189
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.73 E-value=1.1e-08 Score=66.99 Aligned_cols=37 Identities=27% Similarity=0.361 Sum_probs=31.8
Q ss_pred cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 7 KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 7 ~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.+++++ +.+|..+.|.||+|||||||+++++......
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~ 58 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD 58 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC
Confidence 567776 7889999999999999999999999876543
No 190
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.73 E-value=8.1e-09 Score=68.53 Aligned_cols=39 Identities=21% Similarity=0.458 Sum_probs=33.0
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++|+...
T Consensus 9 ~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (243)
T TIGR01978 9 SVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHP 50 (243)
T ss_pred EECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45555566666 8889999999999999999999999874
No 191
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.72 E-value=1e-08 Score=66.44 Aligned_cols=41 Identities=27% Similarity=0.421 Sum_probs=34.5
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++++.....
T Consensus 10 ~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~ 53 (200)
T PRK13540 10 DYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNP 53 (200)
T ss_pred EeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 45555677777 889999999999999999999999987654
No 192
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.72 E-value=9.7e-09 Score=68.52 Aligned_cols=41 Identities=32% Similarity=0.454 Sum_probs=34.3
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++++..+..
T Consensus 12 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 55 (250)
T PRK11264 12 KFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP 55 (250)
T ss_pred EECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 45555677776 788999999999999999999999987654
No 193
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.72 E-value=9.2e-09 Score=68.79 Aligned_cols=42 Identities=21% Similarity=0.339 Sum_probs=34.4
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++++......
T Consensus 12 ~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~ 56 (253)
T TIGR02323 12 SYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD 56 (253)
T ss_pred EeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 35544566666 8889999999999999999999999887543
No 194
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.72 E-value=1e-08 Score=68.29 Aligned_cols=42 Identities=19% Similarity=0.338 Sum_probs=34.5
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.|++..+.+++ +.+|..+.|.||+|||||||+++++......
T Consensus 12 ~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 56 (241)
T PRK14250 12 SSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT 56 (241)
T ss_pred EeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 45555566766 7889999999999999999999999876543
No 195
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.72 E-value=1.3e-08 Score=62.90 Aligned_cols=32 Identities=25% Similarity=0.410 Sum_probs=28.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
.++|+|+|||||||+++.++..++.++++.+.
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d~ 32 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLDE 32 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEchH
Confidence 37899999999999999999999998887665
No 196
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.72 E-value=1.4e-08 Score=67.46 Aligned_cols=46 Identities=15% Similarity=0.318 Sum_probs=40.6
Q ss_pred CCCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccc
Q psy4924 1 MKFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQT 46 (105)
Q Consensus 1 ~~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~ 46 (105)
++||++.+++++ +..|+.+.+.||||||||||+|.+...+.....+
T Consensus 16 ~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~Ge 64 (263)
T COG1127 16 KSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGE 64 (263)
T ss_pred eecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCe
Confidence 578999999999 8899999999999999999999999888765433
No 197
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.72 E-value=1.7e-07 Score=66.57 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=39.3
Q ss_pred eecccCCEEEEEeeCCC-CCCCHHhhcccceEEEeCCC-CHHHHHHHHHHHH
Q psy4924 51 FFKKYPNVLIFTTSNLT-GAIDLAFLDRADIKQYIGFP-SAAAIFNIFSSCV 100 (105)
Q Consensus 51 ~~~~~~~~~~~~~~n~~-~~~d~~~~~r~~~~~~~~~~-~~~~~~~i~~~~~ 100 (105)
++...-++++++|.|.. ..+-+.++|||++.+.+..| +.+++..|..+..
T Consensus 181 si~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~ 232 (423)
T COG1239 181 SIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRL 232 (423)
T ss_pred eeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHH
Confidence 45555678899999986 57778899999999999999 5666777776654
No 198
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.71 E-value=1.1e-08 Score=65.38 Aligned_cols=42 Identities=29% Similarity=0.446 Sum_probs=34.0
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++++......
T Consensus 8 ~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~ 52 (180)
T cd03214 8 GYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS 52 (180)
T ss_pred EECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 35554566666 7889999999999999999999999876543
No 199
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.71 E-value=9.4e-09 Score=70.61 Aligned_cols=43 Identities=21% Similarity=0.395 Sum_probs=35.7
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
.|++..+++++ +.+|..+.|.||+|+|||||+++++..+....
T Consensus 13 ~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~ 58 (303)
T TIGR01288 13 SYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDR 58 (303)
T ss_pred EeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 46665677776 88999999999999999999999998775433
No 200
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=98.71 E-value=1.3e-08 Score=64.80 Aligned_cols=30 Identities=23% Similarity=0.573 Sum_probs=27.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCccccc
Q psy4924 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQ 48 (105)
Q Consensus 19 ill~Gp~GsGKT~l~~~la~~~~~~~~~~~ 48 (105)
++++|||||||||+++.+|..++..++.++
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is~~ 31 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLSAG 31 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECC
Confidence 789999999999999999999998877764
No 201
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.71 E-value=6.4e-08 Score=65.77 Aligned_cols=47 Identities=28% Similarity=0.406 Sum_probs=30.4
Q ss_pred CCEEEEEeeCCCC---CCCHHhhcccceEEEeCCCCHHHHHHHHHHHHHHh
Q psy4924 56 PNVLIFTTSNLTG---AIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEEL 103 (105)
Q Consensus 56 ~~~~~~~~~n~~~---~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~~l 103 (105)
..+.++++.+... .+++.+++.|. .+.++.|+.+.+..|+...+...
T Consensus 147 ~~i~~vaa~~p~~Gr~~is~R~~r~f~-i~~~~~p~~~sl~~If~~il~~~ 196 (272)
T PF12775_consen 147 EDIQFVAAMNPTGGRNPISPRFLRHFN-ILNIPYPSDESLNTIFSSILQSH 196 (272)
T ss_dssp CSEEEEEEESSTTT--SHHHHHHTTEE-EEE----TCCHHHHHHHHHHHHH
T ss_pred eeeEEEEecCCCCCCCCCChHHhhheE-EEEecCCChHHHHHHHHHHHhhh
Confidence 5677788877643 34555666664 66889999999999998887653
No 202
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.71 E-value=1.8e-08 Score=64.11 Aligned_cols=43 Identities=33% Similarity=0.471 Sum_probs=35.1
Q ss_pred cccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcccc
Q psy4924 5 HSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTP 47 (105)
Q Consensus 5 ~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~ 47 (105)
+..+++++ +.+|..++|.||+|||||||++++|.........+
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l 60 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL 60 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceE
Confidence 34566666 77899999999999999999999998887655443
No 203
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.71 E-value=1.2e-08 Score=67.83 Aligned_cols=42 Identities=26% Similarity=0.502 Sum_probs=34.4
Q ss_pred CCcc-ccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 2 KFSH-SKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 2 ~~~~-~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.|++ ..+++++ +.+|..+.|.||+|+|||||+++++......
T Consensus 9 ~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~ 54 (242)
T cd03295 9 RYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT 54 (242)
T ss_pred EeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 4555 4566666 8899999999999999999999999876543
No 204
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.71 E-value=8.9e-09 Score=67.12 Aligned_cols=41 Identities=22% Similarity=0.392 Sum_probs=32.5
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.|++..+.+++ +.++ .+.|.||+|||||||+++++..+...
T Consensus 9 ~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~ 52 (211)
T cd03264 9 RYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS 52 (211)
T ss_pred EECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 35544566666 6678 99999999999999999999876543
No 205
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.71 E-value=1.4e-08 Score=72.44 Aligned_cols=34 Identities=26% Similarity=0.493 Sum_probs=31.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
+++++|+||||+|||++++++|..++.+++.++.
T Consensus 47 p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vda 80 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 80 (441)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCeEEEeec
Confidence 4789999999999999999999999999988775
No 206
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.71 E-value=1.1e-08 Score=68.32 Aligned_cols=40 Identities=23% Similarity=0.413 Sum_probs=33.4
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++++....
T Consensus 15 ~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (253)
T PRK14242 15 FYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMND 57 (253)
T ss_pred EECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 45555566666 88899999999999999999999998753
No 207
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.71 E-value=1.1e-08 Score=66.51 Aligned_cols=44 Identities=25% Similarity=0.321 Sum_probs=35.3
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.|++..+.+++ +.+|..+.|.||+|||||||+++++..+.....
T Consensus 10 ~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G 56 (204)
T PRK13538 10 ERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAG 56 (204)
T ss_pred EECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 35555566666 888999999999999999999999988764433
No 208
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.70 E-value=1.6e-08 Score=64.10 Aligned_cols=42 Identities=24% Similarity=0.390 Sum_probs=34.0
Q ss_pred CCccc--cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 2 KFSHS--KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 2 ~~~~~--~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.|++. .+.+++ +.+|..+.|.||+|+|||||+++++......
T Consensus 9 ~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~ 55 (171)
T cd03228 9 SYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT 55 (171)
T ss_pred EcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 34443 456665 8889999999999999999999999987644
No 209
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.70 E-value=1.1e-08 Score=68.73 Aligned_cols=44 Identities=25% Similarity=0.442 Sum_probs=35.9
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++|+........
T Consensus 11 ~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G 57 (258)
T PRK13548 11 RLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSG 57 (258)
T ss_pred EeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 46555677776 788999999999999999999999988754433
No 210
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.70 E-value=1e-08 Score=69.33 Aligned_cols=42 Identities=21% Similarity=0.442 Sum_probs=34.5
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++|+......
T Consensus 16 ~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 60 (269)
T PRK11831 16 TRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD 60 (269)
T ss_pred EECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 35555566666 8889999999999999999999999887543
No 211
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.70 E-value=1.4e-08 Score=66.45 Aligned_cols=44 Identities=23% Similarity=0.354 Sum_probs=35.6
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.|++..+.+++ +..|..+.|.||+|||||||+++++........
T Consensus 20 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G 66 (214)
T PRK13543 20 SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESG 66 (214)
T ss_pred ecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCe
Confidence 45555566766 888999999999999999999999987654433
No 212
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.70 E-value=1.1e-08 Score=68.29 Aligned_cols=40 Identities=28% Similarity=0.539 Sum_probs=33.7
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.|++..+.+++ +.+|..+.|.||+|||||||+++++....
T Consensus 12 ~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14247 12 SFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIE 54 (250)
T ss_pred EECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 45555566666 78899999999999999999999998764
No 213
>PRK14532 adenylate kinase; Provisional
Probab=98.70 E-value=1.7e-08 Score=64.76 Aligned_cols=31 Identities=23% Similarity=0.450 Sum_probs=28.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCccccc
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQ 48 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~ 48 (105)
.+++.|||||||||+++.+|+.++..+++.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~ 32 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTG 32 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeCc
Confidence 4899999999999999999999999888764
No 214
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=98.70 E-value=2.6e-07 Score=68.02 Aligned_cols=43 Identities=21% Similarity=0.123 Sum_probs=32.5
Q ss_pred EEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 59 LIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 59 ~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
++.+|++.++.+++++.+|+. .+.++.++.+++..++++..++
T Consensus 236 lI~ATt~~p~~L~paLrsR~~-~I~f~pL~~eei~~Il~~~a~k 278 (531)
T TIGR02902 236 LIGATTRNPEEIPPALRSRCV-EIFFRPLLDEEIKEIAKNAAEK 278 (531)
T ss_pred EEEEecCCcccCChHHhhhhh-eeeCCCCCHHHHHHHHHHHHHH
Confidence 345566778999999999986 4556666788888888887754
No 215
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.70 E-value=1.2e-08 Score=64.74 Aligned_cols=40 Identities=28% Similarity=0.428 Sum_probs=32.8
Q ss_pred Cccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 3 FSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 3 ~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
|++..+++++ +.+|..+.|.||+|||||||++.++.....
T Consensus 10 ~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~ 52 (173)
T cd03230 10 YGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP 52 (173)
T ss_pred ECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4444566666 788999999999999999999999987654
No 216
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.70 E-value=1.3e-08 Score=66.39 Aligned_cols=42 Identities=26% Similarity=0.377 Sum_probs=34.2
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.|++..+.+++ +.+|..+.|.||+|+|||||+++++......
T Consensus 11 ~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~ 55 (207)
T PRK13539 11 VRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPA 55 (207)
T ss_pred EECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 35554566666 7889999999999999999999999876543
No 217
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.70 E-value=1.2e-08 Score=67.78 Aligned_cols=42 Identities=33% Similarity=0.597 Sum_probs=34.4
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.|++..+.+++ +.+|..+.|.||+|+|||||+++++......
T Consensus 10 ~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~ 54 (240)
T PRK09493 10 HFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT 54 (240)
T ss_pred EECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 35555566666 7889999999999999999999999876543
No 218
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.69 E-value=1.1e-08 Score=68.58 Aligned_cols=43 Identities=26% Similarity=0.490 Sum_probs=34.9
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++++..+....
T Consensus 13 ~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~ 58 (251)
T PRK09544 13 SFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDE 58 (251)
T ss_pred EECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 35555566666 88999999999999999999999998765433
No 219
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.69 E-value=1.3e-08 Score=68.02 Aligned_cols=40 Identities=20% Similarity=0.472 Sum_probs=34.1
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++|+..+.
T Consensus 13 ~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (252)
T PRK14256 13 HFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHD 55 (252)
T ss_pred EeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 45555677776 88999999999999999999999999764
No 220
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.69 E-value=1.3e-08 Score=68.47 Aligned_cols=40 Identities=28% Similarity=0.468 Sum_probs=33.8
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++++....
T Consensus 22 ~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 64 (260)
T PRK10744 22 YYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYE 64 (260)
T ss_pred EeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 45555567776 88999999999999999999999998764
No 221
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.69 E-value=1.3e-08 Score=66.62 Aligned_cols=37 Identities=24% Similarity=0.344 Sum_probs=31.8
Q ss_pred cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 7 KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 7 ~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.+.+++ +.+|..+.|.||+|||||||+++++......
T Consensus 17 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~ 56 (216)
T TIGR00960 17 PALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT 56 (216)
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 466666 8889999999999999999999999877543
No 222
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.69 E-value=1.2e-08 Score=63.12 Aligned_cols=41 Identities=27% Similarity=0.352 Sum_probs=33.4
Q ss_pred Cccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 3 FSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 3 ~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
|++..+.+++ +.+|..+.|.||+|+|||||+++++......
T Consensus 10 ~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~ 53 (144)
T cd03221 10 YGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD 53 (144)
T ss_pred ECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC
Confidence 4444556665 7889999999999999999999999887543
No 223
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.69 E-value=1.5e-08 Score=68.12 Aligned_cols=40 Identities=28% Similarity=0.470 Sum_probs=33.6
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.|++..+.+++ +.+|..+.|.||+|||||||+++|+....
T Consensus 21 ~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 63 (259)
T PRK14274 21 WYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQ 63 (259)
T ss_pred EECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 35555566666 88899999999999999999999998765
No 224
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.69 E-value=2.6e-07 Score=69.23 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=32.1
Q ss_pred CCEEEEEeeCCC-CCCCHHhhcccceEEEeCCCC-HHHHHHHHHH
Q psy4924 56 PNVLIFTTSNLT-GAIDLAFLDRADIKQYIGFPS-AAAIFNIFSS 98 (105)
Q Consensus 56 ~~~~~~~~~n~~-~~~d~~~~~r~~~~~~~~~~~-~~~~~~i~~~ 98 (105)
.++.+++++|.. ..+..++++||++.+.++.+. .+++.+++.+
T Consensus 168 ~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 168 ARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred CCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHH
Confidence 357888888864 457788999999999999884 4555666654
No 225
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.69 E-value=6e-08 Score=70.03 Aligned_cols=34 Identities=12% Similarity=0.106 Sum_probs=26.5
Q ss_pred CCCHHhhccc--ceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 69 AIDLAFLDRA--DIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 69 ~~d~~~~~r~--~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
.++..+..|| ++...+..|+.+.+..++.+..+.
T Consensus 255 ~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~ 290 (450)
T PRK14087 255 GFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKN 290 (450)
T ss_pred hccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHh
Confidence 3466677777 577788889999999999887754
No 226
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.69 E-value=1.4e-08 Score=68.11 Aligned_cols=43 Identities=23% Similarity=0.336 Sum_probs=35.1
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
.|++..+++++ +.+|..+.|.||+|||||||++.++..+....
T Consensus 15 ~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~ 60 (258)
T PRK11701 15 LYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDA 60 (258)
T ss_pred EcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 45555566666 88999999999999999999999998875433
No 227
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.69 E-value=1.9e-08 Score=69.01 Aligned_cols=46 Identities=26% Similarity=0.364 Sum_probs=37.1
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcccc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTP 47 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~ 47 (105)
.|++...++++ ++.|+.+.|.|||||||||++|+||......-..+
T Consensus 11 ~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I 59 (345)
T COG1118 11 RFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRI 59 (345)
T ss_pred hcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceE
Confidence 45555566655 88999999999999999999999998887655443
No 228
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.69 E-value=1.5e-08 Score=66.39 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=32.5
Q ss_pred cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 7 KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 7 ~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.+.+++ +.+|..+.|.||+|||||||+++++........
T Consensus 19 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G 60 (221)
T TIGR02211 19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSG 60 (221)
T ss_pred EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 366665 889999999999999999999999988764433
No 229
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.69 E-value=1.4e-08 Score=65.73 Aligned_cols=42 Identities=21% Similarity=0.320 Sum_probs=34.3
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.|++..+.+++ +.+|..+.|.||+|+|||||+++++......
T Consensus 9 ~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~ 53 (198)
T TIGR01189 9 SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPD 53 (198)
T ss_pred EECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 35555566666 7889999999999999999999999876543
No 230
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.69 E-value=1.3e-08 Score=68.13 Aligned_cols=42 Identities=24% Similarity=0.427 Sum_probs=34.4
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.|++..+.+++ +.+|..+.|.||||||||||++.|+......
T Consensus 9 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~ 53 (252)
T TIGR03005 9 RFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID 53 (252)
T ss_pred EeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 35555566666 8899999999999999999999999876543
No 231
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.69 E-value=1.7e-08 Score=64.30 Aligned_cols=38 Identities=24% Similarity=0.404 Sum_probs=32.3
Q ss_pred cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 7 KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 7 ~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
.+.+++ +++|..+.|.||+|+|||||+++++.......
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~ 56 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQ 56 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC
Confidence 466666 88999999999999999999999998875433
No 232
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.69 E-value=1.3e-08 Score=68.15 Aligned_cols=41 Identities=29% Similarity=0.526 Sum_probs=34.4
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
.|++..+++++ +.+|..+.|.||+|+|||||+++++..+..
T Consensus 13 ~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 56 (253)
T PRK14267 13 YYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLEL 56 (253)
T ss_pred EeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCc
Confidence 45555677776 888999999999999999999999987643
No 233
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.69 E-value=1.5e-08 Score=68.50 Aligned_cols=40 Identities=18% Similarity=0.366 Sum_probs=34.2
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++|+....
T Consensus 28 ~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 70 (267)
T PRK14235 28 FYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMND 70 (267)
T ss_pred EECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 45555567777 88999999999999999999999999875
No 234
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.69 E-value=1.2e-08 Score=68.20 Aligned_cols=44 Identities=23% Similarity=0.329 Sum_probs=35.4
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++++........
T Consensus 14 ~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G 60 (255)
T PRK11300 14 RFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGG 60 (255)
T ss_pred EECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcc
Confidence 35555566666 788999999999999999999999988764443
No 235
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.68 E-value=1.4e-08 Score=66.19 Aligned_cols=38 Identities=32% Similarity=0.439 Sum_probs=32.0
Q ss_pred ccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 6 SKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 6 ~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
..+.+++ +.+|..+.|.||+|||||||+++++......
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~ 54 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT 54 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 3466666 7889999999999999999999999876543
No 236
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.68 E-value=2.7e-07 Score=59.23 Aligned_cols=41 Identities=12% Similarity=0.027 Sum_probs=30.4
Q ss_pred CEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHH
Q psy4924 57 NVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSS 98 (105)
Q Consensus 57 ~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~ 98 (105)
...++..++.+..+..++.+|+. .+.+..++.+++..++.+
T Consensus 126 ~~~~il~~~~~~~l~~~i~sr~~-~~~~~~~~~~~~~~~l~~ 166 (188)
T TIGR00678 126 NTLFILITPSPEKLLPTIRSRCQ-VLPFPPLSEEALLQWLIR 166 (188)
T ss_pred CeEEEEEECChHhChHHHHhhcE-EeeCCCCCHHHHHHHHHH
Confidence 35566666666888888888885 667788888888777765
No 237
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=7.9e-08 Score=70.62 Aligned_cols=27 Identities=33% Similarity=0.592 Sum_probs=24.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
..++|+||+|+||||+|+++|+.+++.
T Consensus 39 ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (527)
T PRK14969 39 HAYLFTGTRGVGKTTLARILAKSLNCE 65 (527)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 347999999999999999999999873
No 238
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.68 E-value=1.5e-08 Score=67.89 Aligned_cols=41 Identities=27% Similarity=0.454 Sum_probs=34.4
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++++..+..
T Consensus 16 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 59 (254)
T PRK14273 16 FYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDL 59 (254)
T ss_pred EeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccC
Confidence 45555577776 889999999999999999999999987653
No 239
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.68 E-value=1.8e-08 Score=70.93 Aligned_cols=44 Identities=16% Similarity=0.262 Sum_probs=38.3
Q ss_pred CCCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 1 MKFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 1 ~~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
|.|++..+.+++ +..|..+.|.||+|||||||+++|+.......
T Consensus 1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~ 47 (363)
T TIGR01186 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTA 47 (363)
T ss_pred CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCc
Confidence 568887788888 88999999999999999999999998876543
No 240
>PRK10908 cell division protein FtsE; Provisional
Probab=98.68 E-value=1.5e-08 Score=66.52 Aligned_cols=40 Identities=18% Similarity=0.273 Sum_probs=32.8
Q ss_pred ccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 4 SHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 4 ~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
++..+.+++ +.+|..+.|.||+|||||||+++|+......
T Consensus 13 ~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~ 55 (222)
T PRK10908 13 GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS 55 (222)
T ss_pred CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 334566666 7889999999999999999999999876543
No 241
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.68 E-value=1.4e-08 Score=68.13 Aligned_cols=43 Identities=23% Similarity=0.489 Sum_probs=35.3
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++++..+....
T Consensus 11 ~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~ 56 (255)
T PRK11231 11 GYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQS 56 (255)
T ss_pred EECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCC
Confidence 45655677776 78899999999999999999999998765433
No 242
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.68 E-value=1.7e-08 Score=67.05 Aligned_cols=43 Identities=21% Similarity=0.370 Sum_probs=34.8
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
.|++..+.+++ +.+|..+.|.||+|+|||||+++++.......
T Consensus 11 ~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~ 56 (242)
T TIGR03411 11 SFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDE 56 (242)
T ss_pred EcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 45555566666 88899999999999999999999998875433
No 243
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.68 E-value=1.8e-08 Score=66.99 Aligned_cols=47 Identities=19% Similarity=0.261 Sum_probs=37.3
Q ss_pred CCcccc----ccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccc
Q psy4924 2 KFSHSK----VKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQ 48 (105)
Q Consensus 2 ~~~~~~----~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~ 48 (105)
.|+... +.+++ +..|..+-|+|++|||||||+++++........++.
T Consensus 12 ~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~ 65 (252)
T COG1124 12 VYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSIL 65 (252)
T ss_pred EecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEE
Confidence 355544 66776 889999999999999999999999988776554433
No 244
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=3.1e-07 Score=64.52 Aligned_cols=84 Identities=18% Similarity=0.213 Sum_probs=55.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCcc------------ccce---------------------------e------
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ------------TPQA---------------------------I------ 50 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~------------~~~~---------------------------~------ 50 (105)
+..++|+||+|+|||++++++++.+.++.. +.+. +
T Consensus 39 ~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~ 118 (367)
T PRK14970 39 AQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVH 118 (367)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChh
Confidence 347999999999999999999999876211 0000 0
Q ss_pred ------------eecc-cCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHH
Q psy4924 51 ------------FFKK-YPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCV 100 (105)
Q Consensus 51 ------------~~~~-~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~ 100 (105)
.++. .....++.+++....+.+++.+|+.. +.+..++.+++..++.+..
T Consensus 119 ~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~-v~~~~~~~~~l~~~l~~~~ 180 (367)
T PRK14970 119 MLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQI-FDFKRITIKDIKEHLAGIA 180 (367)
T ss_pred hcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhccee-EecCCccHHHHHHHHHHHH
Confidence 1222 23345566666667888888888864 5667777777776666543
No 245
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.68 E-value=1.2e-08 Score=69.19 Aligned_cols=41 Identities=34% Similarity=0.437 Sum_probs=34.6
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++|+..+..
T Consensus 10 ~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p 53 (272)
T PRK13547 10 ARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTG 53 (272)
T ss_pred EECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 45555677776 889999999999999999999999987753
No 246
>PRK14527 adenylate kinase; Provisional
Probab=98.67 E-value=3.5e-08 Score=63.55 Aligned_cols=35 Identities=34% Similarity=0.646 Sum_probs=30.7
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccc
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQ 48 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~ 48 (105)
..+..++++|||||||||+++.++..++...+..+
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~g 38 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTG 38 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCcc
Confidence 35778999999999999999999999998877653
No 247
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.67 E-value=1.8e-08 Score=68.04 Aligned_cols=39 Identities=23% Similarity=0.472 Sum_probs=33.2
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++++...
T Consensus 30 ~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 71 (268)
T PRK14248 30 YYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMN 71 (268)
T ss_pred EeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 45555677766 7889999999999999999999999865
No 248
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.67 E-value=2e-08 Score=62.11 Aligned_cols=31 Identities=26% Similarity=0.509 Sum_probs=26.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 19 ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
+++.|+|||||||+++.++..++..+++.+.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~~D~ 32 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFIDGDD 32 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEeCcc
Confidence 7899999999999999999998877765443
No 249
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.67 E-value=1.4e-08 Score=68.19 Aligned_cols=40 Identities=18% Similarity=0.361 Sum_probs=33.8
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.|++..+++++ +.+|..+.|.||+|||||||++.++....
T Consensus 13 ~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~ 55 (258)
T PRK14241 13 YYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHE 55 (258)
T ss_pred EECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 45555566666 88899999999999999999999998764
No 250
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.67 E-value=1.3e-08 Score=68.56 Aligned_cols=44 Identities=20% Similarity=0.389 Sum_probs=35.7
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++++........
T Consensus 16 ~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G 62 (265)
T PRK10253 16 GYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHG 62 (265)
T ss_pred EECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCc
Confidence 45555567776 788999999999999999999999988764433
No 251
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.67 E-value=1.3e-07 Score=70.14 Aligned_cols=84 Identities=18% Similarity=0.263 Sum_probs=57.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCcc------------------------ccce----------------------
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ------------------------TPQA---------------------- 49 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~------------------------~~~~---------------------- 49 (105)
+..++++||+|+||||+|+++|+.+.|... .++.
T Consensus 38 ~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~ 117 (605)
T PRK05896 38 THAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTT 117 (605)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhh
Confidence 346899999999999999999999876321 0110
Q ss_pred -----------------------eeecc-cCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHH
Q psy4924 50 -----------------------IFFKK-YPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCV 100 (105)
Q Consensus 50 -----------------------~~~~~-~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~ 100 (105)
-.++. .+...++.+|+.+..+...+.+|+. .+.+..++.+++...+.+.+
T Consensus 118 ~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq-~ieF~~Ls~~eL~~~L~~il 191 (605)
T PRK05896 118 FKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQ-RYNFKKLNNSELQELLKSIA 191 (605)
T ss_pred CCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhh-hcccCCCCHHHHHHHHHHHH
Confidence 02222 2356666777777888888888986 45667777777766666543
No 252
>PRK14531 adenylate kinase; Provisional
Probab=98.67 E-value=2.9e-08 Score=63.63 Aligned_cols=32 Identities=25% Similarity=0.494 Sum_probs=28.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCccccc
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQ 48 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~ 48 (105)
..++++|||||||||+++.+|..++.+++...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~g 34 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTG 34 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEecc
Confidence 46999999999999999999999999877653
No 253
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.67 E-value=1.4e-08 Score=71.16 Aligned_cols=45 Identities=31% Similarity=0.419 Sum_probs=36.3
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQT 46 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~ 46 (105)
.|++..+.+++ +..|..+.|.||+|||||||+++|+.........
T Consensus 15 ~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~ 62 (351)
T PRK11432 15 RFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQ 62 (351)
T ss_pred EECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceE
Confidence 46655566666 8889999999999999999999999887654443
No 254
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.67 E-value=1.4e-08 Score=68.50 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=34.7
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++++.......
T Consensus 20 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~ 65 (265)
T PRK10575 20 RVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSE 65 (265)
T ss_pred EECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCC
Confidence 35555566666 78899999999999999999999998765433
No 255
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=98.67 E-value=1.7e-08 Score=63.31 Aligned_cols=31 Identities=26% Similarity=0.536 Sum_probs=26.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 19 ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
+++.||+||||||+++.++..++..+++.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~ 31 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDD 31 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCcc
Confidence 4789999999999999999999877655444
No 256
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.67 E-value=1.7e-08 Score=67.36 Aligned_cols=41 Identities=29% Similarity=0.503 Sum_probs=34.3
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
.|++..+.+++ +.+|..+.|.||+|||||||+++++.....
T Consensus 10 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p 53 (247)
T TIGR00972 10 FYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDL 53 (247)
T ss_pred EECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 45555566666 889999999999999999999999988754
No 257
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.67 E-value=1e-07 Score=71.59 Aligned_cols=84 Identities=17% Similarity=0.256 Sum_probs=57.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCcc------------------------ccce-----------------------
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQ------------------------TPQA----------------------- 49 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~~~~------------------------~~~~----------------------- 49 (105)
..++|+||+|+||||+|+++|+.+++... .++.
T Consensus 39 Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~g 118 (709)
T PRK08691 39 HAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAG 118 (709)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhC
Confidence 36899999999999999999999876421 1110
Q ss_pred ----------------------eeec-ccCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 50 ----------------------IFFK-KYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 50 ----------------------~~~~-~~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
..++ ..+.+.+|.+++.+..+...+++|+ ..+.+..++.+++...+.+.++
T Consensus 119 k~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~ 192 (709)
T PRK08691 119 KYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLD 192 (709)
T ss_pred CcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHH
Confidence 0122 2245667777787888888888887 3445566777777766665544
No 258
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.67 E-value=1.6e-08 Score=67.01 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=35.2
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++++........
T Consensus 14 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G 60 (237)
T PRK11614 14 HYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSG 60 (237)
T ss_pred eeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCc
Confidence 45555566666 889999999999999999999999987654333
No 259
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.67 E-value=2e-08 Score=66.98 Aligned_cols=40 Identities=25% Similarity=0.442 Sum_probs=33.9
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.|++..+.+++ +.+|..+.|.||+|+|||||+++|+....
T Consensus 12 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (249)
T PRK14253 12 FYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMND 54 (249)
T ss_pred EECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 45555567776 88999999999999999999999998765
No 260
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.66 E-value=2.3e-08 Score=63.17 Aligned_cols=40 Identities=30% Similarity=0.408 Sum_probs=33.1
Q ss_pred ccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 6 SKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 6 ~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
..+.+++ +.+|..+.|.||+|||||||+++++..+.....
T Consensus 14 ~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 56 (166)
T cd03223 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSG 56 (166)
T ss_pred CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 3466666 788999999999999999999999988765433
No 261
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.66 E-value=1.5e-08 Score=71.45 Aligned_cols=44 Identities=25% Similarity=0.431 Sum_probs=35.6
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.|++..+++++ +..|..+.|.||+|||||||+++|+........
T Consensus 12 ~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G 58 (369)
T PRK11000 12 AYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSG 58 (369)
T ss_pred EeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Confidence 46655566666 788999999999999999999999987754433
No 262
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.66 E-value=1.6e-08 Score=67.85 Aligned_cols=44 Identities=20% Similarity=0.258 Sum_probs=36.0
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.|++..+++++ +.+|..+.|.||+|+|||||+++|+..+.....
T Consensus 10 ~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G 56 (256)
T TIGR03873 10 SAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAG 56 (256)
T ss_pred EECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCC
Confidence 45555677777 789999999999999999999999987765443
No 263
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.66 E-value=3.6e-07 Score=62.60 Aligned_cols=84 Identities=23% Similarity=0.212 Sum_probs=52.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCcc-----ccc-----------------------------ee------------
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQ-----TPQ-----------------------------AI------------ 50 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~~~~-----~~~-----------------------------~~------------ 50 (105)
..++|+||+|+|||++++++++++..+.. ... .+
T Consensus 39 ~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~ 118 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDA 118 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHH
Confidence 35899999999999999999998743211 110 00
Q ss_pred ------eec-ccCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 51 ------FFK-KYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 51 ------~~~-~~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
.++ ..+...++.+++....+..++.+|+.. +.++.++.+++..++.+..+
T Consensus 119 ~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~-~~~~~l~~~ei~~~l~~~~~ 175 (319)
T PRK00440 119 QQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAV-FRFSPLKKEAVAERLRYIAE 175 (319)
T ss_pred HHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhe-eeeCCCCHHHHHHHHHHHHH
Confidence 000 112233455556555566667777764 56677777887777776554
No 264
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.66 E-value=1.7e-08 Score=67.42 Aligned_cols=40 Identities=18% Similarity=0.377 Sum_probs=33.4
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.|+...+++++ +.+|..+.|.||+|||||||+++++....
T Consensus 13 ~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14251 13 SYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred EECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccc
Confidence 45555566666 88899999999999999999999998764
No 265
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.66 E-value=1.8e-08 Score=69.04 Aligned_cols=44 Identities=27% Similarity=0.375 Sum_probs=37.6
Q ss_pred CCCc-cccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 1 MKFS-HSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 1 ~~~~-~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
|.|+ +..+.+++ +++|..+.|.||||+||||++++++.......
T Consensus 12 k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~ 59 (293)
T COG1131 12 KKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTS 59 (293)
T ss_pred EEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCc
Confidence 3577 57788888 88899999999999999999999998886543
No 266
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.66 E-value=1.8e-08 Score=67.23 Aligned_cols=40 Identities=28% Similarity=0.494 Sum_probs=33.2
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.|++..+++++ +.+|..+.|.||+|+|||||+++|+....
T Consensus 12 ~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 54 (250)
T PRK14262 12 YYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMND 54 (250)
T ss_pred EeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 45555566666 78899999999999999999999998654
No 267
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.66 E-value=3.4e-07 Score=61.14 Aligned_cols=88 Identities=24% Similarity=0.200 Sum_probs=65.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCcccccee--------------------------------------------
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAI-------------------------------------------- 50 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~~-------------------------------------------- 50 (105)
+...++|||.-|+|||+|++++-.+.+.....+-.+
T Consensus 84 pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~ 163 (287)
T COG2607 84 PANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSA 163 (287)
T ss_pred cccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHH
Confidence 456799999999999999999998887665443320
Q ss_pred ----eecccCCEEEEEeeCCCCCCCH----------------------HhhcccceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 51 ----FFKKYPNVLIFTTSNLTGAIDL----------------------AFLDRADIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 51 ----~~~~~~~~~~~~~~n~~~~~d~----------------------~~~~r~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
.-....+|++.+|+|+-..+.. .+-+||++.+-+..++|++...++..+.+.
T Consensus 164 LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~ 241 (287)
T COG2607 164 LEGGVEGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKH 241 (287)
T ss_pred hcCCcccCCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHH
Confidence 1233467889999998533321 245689998888888999999998887754
No 268
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.66 E-value=1.9e-08 Score=66.98 Aligned_cols=41 Identities=20% Similarity=0.308 Sum_probs=36.7
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
.|+++.++.++ ++++....|+||+|||||||++.++.+.-.
T Consensus 40 ~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~p 83 (257)
T COG1119 40 RRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPP 83 (257)
T ss_pred EECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCC
Confidence 46788889988 889999999999999999999999987754
No 269
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.66 E-value=1.8e-08 Score=68.03 Aligned_cols=40 Identities=20% Similarity=0.439 Sum_probs=33.9
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++++....
T Consensus 29 ~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 71 (267)
T PRK14237 29 YYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMND 71 (267)
T ss_pred EECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 45555667777 88899999999999999999999998764
No 270
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.66 E-value=2.4e-08 Score=65.75 Aligned_cols=42 Identities=26% Similarity=0.419 Sum_probs=34.2
Q ss_pred CCcc-ccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 2 KFSH-SKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 2 ~~~~-~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.|++ ..+.+++ +..|..+.|.||+|||||||+++++......
T Consensus 11 ~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~ 56 (229)
T cd03254 11 SYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ 56 (229)
T ss_pred ecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC
Confidence 4543 3467776 8889999999999999999999999887543
No 271
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.66 E-value=3.5e-08 Score=62.92 Aligned_cols=32 Identities=22% Similarity=0.614 Sum_probs=27.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCcccc
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTP 47 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~ 47 (105)
...+++.|||||||||+++.++..++......
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~ 34 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLST 34 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 46799999999999999999999988776654
No 272
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.65 E-value=1.9e-08 Score=66.57 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=31.6
Q ss_pred cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 7 KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 7 ~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.+++++ +.+|..+.|.||+|||||||+++++..+...
T Consensus 23 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~ 62 (233)
T PRK11629 23 DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT 62 (233)
T ss_pred eeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 466666 8889999999999999999999999876543
No 273
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.65 E-value=1.9e-08 Score=66.14 Aligned_cols=43 Identities=33% Similarity=0.462 Sum_probs=34.5
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
.|++..+.+++ +.+|..+.|.||+|+|||||+++++..+....
T Consensus 9 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~ 54 (223)
T TIGR03740 9 RFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTS 54 (223)
T ss_pred EECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 35555566666 77899999999999999999999998765433
No 274
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.65 E-value=3.1e-08 Score=62.88 Aligned_cols=37 Identities=27% Similarity=0.442 Sum_probs=31.2
Q ss_pred cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 7 KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 7 ~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.+.+++ +.+|..+.|.||+|+|||||+++++......
T Consensus 16 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~ 55 (173)
T cd03246 16 PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT 55 (173)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC
Confidence 355555 7889999999999999999999999887543
No 275
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.65 E-value=1.8e-08 Score=70.75 Aligned_cols=44 Identities=27% Similarity=0.376 Sum_probs=35.4
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.|++..+.+++ +..|..+.|.||+|||||||+++||........
T Consensus 13 ~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G 59 (353)
T TIGR03265 13 RFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAG 59 (353)
T ss_pred EeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCce
Confidence 46655566655 788999999999999999999999987764433
No 276
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.65 E-value=3.1e-08 Score=70.78 Aligned_cols=35 Identities=34% Similarity=0.562 Sum_probs=30.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
....++|+||||||||++|+++|+.++.++..++.
T Consensus 107 ~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~ 141 (412)
T PRK05342 107 QKSNILLIGPTGSGKTLLAQTLARILDVPFAIADA 141 (412)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCceecch
Confidence 35679999999999999999999999988875544
No 277
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.65 E-value=1.9e-08 Score=70.31 Aligned_cols=46 Identities=17% Similarity=0.317 Sum_probs=37.7
Q ss_pred CCCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccc
Q psy4924 1 MKFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQT 46 (105)
Q Consensus 1 ~~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~ 46 (105)
|.|++..+.+++ +++|..+.|.||+|+|||||+++|+..+......
T Consensus 49 k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~ 97 (340)
T PRK13536 49 KSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGK 97 (340)
T ss_pred EEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceE
Confidence 356666677777 8899999999999999999999999887654443
No 278
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.65 E-value=2.1e-08 Score=67.12 Aligned_cols=40 Identities=30% Similarity=0.463 Sum_probs=33.5
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++++....
T Consensus 15 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (253)
T PRK14261 15 WYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMND 57 (253)
T ss_pred EECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhcccc
Confidence 45555677777 88899999999999999999999997654
No 279
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.65 E-value=2.7e-08 Score=64.58 Aligned_cols=40 Identities=28% Similarity=0.373 Sum_probs=33.8
Q ss_pred cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccc
Q psy4924 7 KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQT 46 (105)
Q Consensus 7 ~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~ 46 (105)
.+++++ +++|..+.|.||+|+|||||++.++.........
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~ 61 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGS 61 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCe
Confidence 467776 8899999999999999999999999987654443
No 280
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.65 E-value=2.5e-07 Score=68.82 Aligned_cols=45 Identities=13% Similarity=0.076 Sum_probs=34.8
Q ss_pred CCEEEEEeeCCCC---CCCHHhhcccceEEEeCCC-CHHHHHHHHHHHH
Q psy4924 56 PNVLIFTTSNLTG---AIDLAFLDRADIKQYIGFP-SAAAIFNIFSSCV 100 (105)
Q Consensus 56 ~~~~~~~~~n~~~---~~d~~~~~r~~~~~~~~~~-~~~~~~~i~~~~~ 100 (105)
..+.+++++|... .+.+++++||++++.+.++ +.+++.+++++.+
T Consensus 126 ~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 126 AKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDLRVEIVRRER 174 (589)
T ss_pred CceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHHHHHHHHHHH
Confidence 3577888888764 6888999999998888776 5666777777654
No 281
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.65 E-value=2.5e-08 Score=65.94 Aligned_cols=38 Identities=29% Similarity=0.478 Sum_probs=32.0
Q ss_pred cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 7 KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 7 ~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
.+.+++ +.+|..+.|.||+|+|||||+++++......-
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~ 56 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDS 56 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCC
Confidence 466665 78899999999999999999999998875433
No 282
>PRK13946 shikimate kinase; Provisional
Probab=98.65 E-value=3.7e-08 Score=63.18 Aligned_cols=34 Identities=26% Similarity=0.470 Sum_probs=31.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
.+.|++.|++||||||+++.+|..++.++++.+.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 4679999999999999999999999999998775
No 283
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.65 E-value=2e-08 Score=68.05 Aligned_cols=42 Identities=19% Similarity=0.312 Sum_probs=34.3
Q ss_pred CCc-cccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 2 KFS-HSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 2 ~~~-~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.|+ +..+++++ +.+|..+.|.||+|||||||+++|+......
T Consensus 15 ~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~ 60 (272)
T PRK15056 15 TWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA 60 (272)
T ss_pred EecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 353 34567776 8899999999999999999999999886543
No 284
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.65 E-value=2e-08 Score=67.10 Aligned_cols=39 Identities=23% Similarity=0.466 Sum_probs=32.6
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
.|++..+.+++ +.+|..+.|.||+|||||||+++++...
T Consensus 14 ~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (252)
T PRK14239 14 YYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMN 55 (252)
T ss_pred EECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 45555566666 7889999999999999999999999763
No 285
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.64 E-value=2e-08 Score=67.39 Aligned_cols=42 Identities=14% Similarity=0.325 Sum_probs=34.4
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.|++..+.+++ +.+|..+.|.||+|+|||||+++++......
T Consensus 14 ~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~ 58 (257)
T PRK10619 14 RYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS 58 (257)
T ss_pred EECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 35545566666 8899999999999999999999999887543
No 286
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.64 E-value=2.2e-07 Score=64.75 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=30.8
Q ss_pred CCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 56 PNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 56 ~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
+.+.++.+++.++.+...+.+|+. .+.+..|+.+++..++....+
T Consensus 146 ~~~~lIl~~~~~~~l~~~l~sr~~-~~~~~~~~~~~l~~~l~~~~~ 190 (355)
T TIGR02397 146 EHVVFILATTEPHKIPATILSRCQ-RFDFKRIPLEDIVERLKKILD 190 (355)
T ss_pred cceeEEEEeCCHHHHHHHHHhhee-EEEcCCCCHHHHHHHHHHHHH
Confidence 445566677766666777778885 456677778888777776543
No 287
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.64 E-value=1.8e-08 Score=69.18 Aligned_cols=44 Identities=20% Similarity=0.322 Sum_probs=36.3
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.|++..+.+++ +.+|..+.|.||+|+|||||+++++........
T Consensus 11 ~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G 57 (301)
T TIGR03522 11 LYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSG 57 (301)
T ss_pred EECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 46666677777 889999999999999999999999987654433
No 288
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.64 E-value=3.2e-07 Score=67.87 Aligned_cols=84 Identities=21% Similarity=0.217 Sum_probs=57.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCcc------------------------ccce----------------------
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ------------------------TPQA---------------------- 49 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~------------------------~~~~---------------------- 49 (105)
+..++|+||+|+|||++|+.+|+.+++... .++.
T Consensus 38 ~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~ 117 (559)
T PRK05563 38 SHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSE 117 (559)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCccc
Confidence 445889999999999999999999986431 1100
Q ss_pred -----------------------eeecc-cCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHH
Q psy4924 50 -----------------------IFFKK-YPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCV 100 (105)
Q Consensus 50 -----------------------~~~~~-~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~ 100 (105)
..++. ...+++|.+|+.++.+...+.+|+... .+..++..++...+...+
T Consensus 118 ~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~-~f~~~~~~ei~~~L~~i~ 191 (559)
T PRK05563 118 AKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRF-DFKRISVEDIVERLKYIL 191 (559)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEE-ecCCCCHHHHHHHHHHHH
Confidence 01222 245566666777788888888888654 566667777666665544
No 289
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.64 E-value=2e-08 Score=69.16 Aligned_cols=45 Identities=18% Similarity=0.263 Sum_probs=36.7
Q ss_pred CCCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 1 MKFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 1 ~~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
|.|++..+.+++ +..|..+.|.||+|+|||||+++++..+.....
T Consensus 15 k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G 62 (306)
T PRK13537 15 KRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAG 62 (306)
T ss_pred EEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 356666677777 788999999999999999999999987765433
No 290
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.64 E-value=2e-08 Score=67.61 Aligned_cols=41 Identities=24% Similarity=0.491 Sum_probs=34.3
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
.|++..+.+++ +.+|..+.|.||+|||||||+++|+.....
T Consensus 13 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p 56 (262)
T PRK09984 13 TFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITG 56 (262)
T ss_pred EeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 45555566666 788999999999999999999999988753
No 291
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.64 E-value=2.9e-08 Score=65.01 Aligned_cols=37 Identities=27% Similarity=0.313 Sum_probs=31.6
Q ss_pred cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 7 KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 7 ~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.+++++ +.+|..+.|.||+|||||||+++++......
T Consensus 18 ~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~ 57 (220)
T cd03245 18 PALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT 57 (220)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC
Confidence 466666 7899999999999999999999999876543
No 292
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.64 E-value=2e-08 Score=70.52 Aligned_cols=44 Identities=27% Similarity=0.457 Sum_probs=35.3
Q ss_pred CC-ccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 2 KF-SHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 2 ~~-~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.| ++..+++++ +..|..+.|.||||||||||+++||........
T Consensus 12 ~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G 59 (356)
T PRK11650 12 SYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSG 59 (356)
T ss_pred EeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCce
Confidence 45 445566666 888999999999999999999999998765443
No 293
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.64 E-value=2.7e-08 Score=65.03 Aligned_cols=42 Identities=19% Similarity=0.312 Sum_probs=32.9
Q ss_pred CCCccccccccc-ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 1 MKFSHSKVKSNI-ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 1 ~~~~~~~~~~~~-~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
|+|++..+.-++ +.+ ..+.|.||+|||||||+++++..+...
T Consensus 8 ~~~~~~~~~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~ 50 (214)
T cd03297 8 KRLPDFTLKIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD 50 (214)
T ss_pred EecCCeeeCceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 467776552222 778 999999999999999999999887543
No 294
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.64 E-value=2.1e-08 Score=75.03 Aligned_cols=44 Identities=23% Similarity=0.233 Sum_probs=37.4
Q ss_pred CCCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 1 MKFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 1 ~~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
+.|++..+++++ +.+|..+.|+||+|||||||+++|+.......
T Consensus 9 ~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~ 55 (638)
T PRK10636 9 IRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADG 55 (638)
T ss_pred EEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 357777788887 88999999999999999999999998765433
No 295
>PTZ00301 uridine kinase; Provisional
Probab=98.64 E-value=3.8e-07 Score=59.87 Aligned_cols=24 Identities=33% Similarity=0.638 Sum_probs=21.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
..|.|.|||||||||+|+.|+.++
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHH
Confidence 568999999999999999998776
No 296
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.64 E-value=2.8e-08 Score=63.70 Aligned_cols=32 Identities=31% Similarity=0.568 Sum_probs=28.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
.|+|+|||||||||+++.||..++..++..+.
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~ 32 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGD 32 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECcH
Confidence 37999999999999999999999988877643
No 297
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.64 E-value=2.6e-08 Score=65.61 Aligned_cols=38 Identities=18% Similarity=0.280 Sum_probs=32.2
Q ss_pred cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 7 KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 7 ~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
.+++++ +.+|..+.|.||+|+|||||+++++.......
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~ 64 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSS 64 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCC
Confidence 366666 88999999999999999999999998875443
No 298
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=98.64 E-value=2.5e-08 Score=67.50 Aligned_cols=40 Identities=28% Similarity=0.465 Sum_probs=33.7
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.|++..+++++ +.+|..+.|.|++|||||||+++|+..+.
T Consensus 33 ~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 75 (271)
T PRK14238 33 WYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVE 75 (271)
T ss_pred EECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 35555566666 88899999999999999999999998765
No 299
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.63 E-value=3.6e-07 Score=63.92 Aligned_cols=46 Identities=15% Similarity=0.017 Sum_probs=33.1
Q ss_pred CCEEEEEeeCCCC---CCCHHhhcccc-eEEEeCCCCHHHHHHHHHHHHH
Q psy4924 56 PNVLIFTTSNLTG---AIDLAFLDRAD-IKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 56 ~~~~~~~~~n~~~---~~d~~~~~r~~-~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
.++.+++.+|.++ .++....+|+. ..+.++.++.+++..++.+.++
T Consensus 164 ~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 164 AKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred CeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 4566777887764 46666667774 4567777788899999887764
No 300
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=98.63 E-value=2.8e-08 Score=67.02 Aligned_cols=40 Identities=20% Similarity=0.387 Sum_probs=33.4
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.|++..+++++ +.+|..+.|.||+|+|||||+++++....
T Consensus 19 ~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 61 (264)
T PRK14243 19 YYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLND 61 (264)
T ss_pred EECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 35555566666 88899999999999999999999998654
No 301
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.63 E-value=2.5e-08 Score=66.61 Aligned_cols=40 Identities=25% Similarity=0.416 Sum_probs=33.2
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.|++..+.+++ +.+|..+.|.||+|||||||+++|+....
T Consensus 12 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14240 12 FYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMND 54 (250)
T ss_pred EECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 35555566666 78899999999999999999999998654
No 302
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.63 E-value=2.7e-08 Score=64.53 Aligned_cols=42 Identities=21% Similarity=0.299 Sum_probs=34.4
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.|++..+.+++ +.+|..+.|.||+|+|||||+++++......
T Consensus 9 ~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~ 53 (201)
T cd03231 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL 53 (201)
T ss_pred EeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 35555566666 7889999999999999999999999877543
No 303
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.63 E-value=2.7e-08 Score=72.28 Aligned_cols=42 Identities=24% Similarity=0.362 Sum_probs=35.4
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++++..+...
T Consensus 12 ~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~ 56 (490)
T PRK10938 12 RLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL 56 (490)
T ss_pred EcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC
Confidence 56665677776 8899999999999999999999999877543
No 304
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.63 E-value=2.3e-08 Score=67.60 Aligned_cols=40 Identities=23% Similarity=0.465 Sum_probs=33.4
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++|+....
T Consensus 22 ~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 64 (269)
T PRK14259 22 SYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMND 64 (269)
T ss_pred EECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 35555566666 78899999999999999999999998754
No 305
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.63 E-value=2.4e-08 Score=66.71 Aligned_cols=40 Identities=20% Similarity=0.378 Sum_probs=32.9
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.|++..+.+++ +.+|..+.|.||+|||||||+++|+....
T Consensus 14 ~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (252)
T PRK14255 14 FYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMND 56 (252)
T ss_pred EECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 35555566666 78899999999999999999999998643
No 306
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.63 E-value=3.5e-08 Score=66.46 Aligned_cols=46 Identities=26% Similarity=0.315 Sum_probs=35.7
Q ss_pred CCCccc-cccccc--ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccc
Q psy4924 1 MKFSHS-KVKSNI--ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQT 46 (105)
Q Consensus 1 ~~~~~~-~~~~~~--~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~ 46 (105)
|+|++. .+.+++ +.+|..+.|.||+|+|||||+++++......-..
T Consensus 8 ~~y~~~~~~l~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~ 56 (255)
T cd03236 8 HRYGPNSFKLHRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGK 56 (255)
T ss_pred eeecCcchhhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCce
Confidence 356543 355555 6789999999999999999999999988765444
No 307
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.63 E-value=1.7e-08 Score=73.03 Aligned_cols=66 Identities=21% Similarity=0.301 Sum_probs=50.5
Q ss_pred cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccceeeecccCCEEEEEeeCCCCCCCHHhhcccceEEE
Q psy4924 7 KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAFLDRADIKQY 83 (105)
Q Consensus 7 ~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~d~~~~~r~~~~~~ 83 (105)
.+.+++ +.+|..+-++||+|||||||+|.+.. -|....++.+.+..|...++|..+-.+
T Consensus 350 pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG------------------~w~p~~G~VRLDga~l~qWd~e~lG~h 411 (580)
T COG4618 350 PILKGISFALQAGEALGIIGPSGSGKSTLARLLVG------------------IWPPTSGSVRLDGADLRQWDREQLGRH 411 (580)
T ss_pred cceecceeEecCCceEEEECCCCccHHHHHHHHHc------------------ccccCCCcEEecchhhhcCCHHHhccc
Confidence 455555 78899999999999999999999984 444555556667777777777777777
Q ss_pred eCCCCHH
Q psy4924 84 IGFPSAA 90 (105)
Q Consensus 84 ~~~~~~~ 90 (105)
++|.+|+
T Consensus 412 iGYLPQd 418 (580)
T COG4618 412 IGYLPQD 418 (580)
T ss_pred cCcCccc
Confidence 7877665
No 308
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.63 E-value=2.6e-08 Score=67.95 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=31.9
Q ss_pred ccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 8 VKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 8 ~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
+++++ +.+|..+.|.||+|||||||+++++..+....
T Consensus 26 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~ 65 (289)
T PRK13645 26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISET 65 (289)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 66666 88899999999999999999999998875443
No 309
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.63 E-value=2.4e-08 Score=66.79 Aligned_cols=41 Identities=27% Similarity=0.475 Sum_probs=34.2
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
.|++..+++++ +.+|..+.|.||+|||||||++.++.....
T Consensus 13 ~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~ 56 (251)
T PRK14249 13 FYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDI 56 (251)
T ss_pred EECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCc
Confidence 45555566666 788999999999999999999999987753
No 310
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.63 E-value=2.4e-08 Score=66.70 Aligned_cols=41 Identities=24% Similarity=0.480 Sum_probs=34.4
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
.|++..+++++ +.+|..+.|.||+|+|||||+++++..+..
T Consensus 13 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 56 (252)
T PRK14272 13 YYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDL 56 (252)
T ss_pred EECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 45555677776 788999999999999999999999998643
No 311
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.62 E-value=2.7e-08 Score=66.07 Aligned_cols=42 Identities=24% Similarity=0.442 Sum_probs=34.9
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.|++..+++++ +.+|..+.|.||+|+|||||+++++..+...
T Consensus 9 ~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~ 53 (237)
T TIGR00968 9 RFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD 53 (237)
T ss_pred EECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 45555677776 8899999999999999999999999876543
No 312
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.62 E-value=3e-08 Score=65.65 Aligned_cols=44 Identities=23% Similarity=0.247 Sum_probs=35.6
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
+|++..+.+++ +.+|..+.|.||+|+|||||+++++......-.
T Consensus 9 ~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G 55 (232)
T cd03300 9 FYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSG 55 (232)
T ss_pred EeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 35545566776 888999999999999999999999988765433
No 313
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.62 E-value=2.4e-08 Score=70.05 Aligned_cols=44 Identities=32% Similarity=0.482 Sum_probs=35.9
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.|++..+.+++ +..|..+.|.||+|||||||+++|+........
T Consensus 11 ~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G 57 (353)
T PRK10851 11 SFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSG 57 (353)
T ss_pred EeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 45555566666 788999999999999999999999998765443
No 314
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.62 E-value=3.2e-08 Score=66.53 Aligned_cols=40 Identities=30% Similarity=0.489 Sum_probs=34.0
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.|++..+++++ +.+|..+.|.|++|||||||++.++..+.
T Consensus 16 ~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~ 58 (259)
T PRK14260 16 YYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISE 58 (259)
T ss_pred EECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 45555567777 88999999999999999999999998765
No 315
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.62 E-value=3.6e-08 Score=66.33 Aligned_cols=43 Identities=26% Similarity=0.482 Sum_probs=36.2
Q ss_pred CCCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 1 MKFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 1 ~~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
+.|++..+.+++ +.+|..+.|.||+|+|||||++.|+......
T Consensus 18 ~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~ 63 (257)
T PRK14246 18 LYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIY 63 (257)
T ss_pred EecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 356776777777 7889999999999999999999999876543
No 316
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.62 E-value=4.1e-08 Score=70.13 Aligned_cols=34 Identities=26% Similarity=0.493 Sum_probs=31.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
+.+++|+||||+|||++|+.+|..++.+++.++.
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~ 83 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeecc
Confidence 4789999999999999999999999999988775
No 317
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.62 E-value=2.4e-08 Score=70.59 Aligned_cols=43 Identities=30% Similarity=0.417 Sum_probs=34.5
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
.|++..+.+++ +..|..+.|.||+|||||||+++||......-
T Consensus 23 ~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~ 68 (375)
T PRK09452 23 SFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDS 68 (375)
T ss_pred EECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCc
Confidence 45555555555 78899999999999999999999998776543
No 318
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.61 E-value=4.4e-08 Score=62.76 Aligned_cols=30 Identities=43% Similarity=0.620 Sum_probs=24.2
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
+..+.+++|+||+|+||||||.+++.++-.
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~ 73 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIR 73 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhcc
Confidence 566889999999999999999999987643
No 319
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.61 E-value=2.7e-08 Score=66.37 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=33.4
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++++....
T Consensus 11 ~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (246)
T PRK14269 11 FYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMND 53 (246)
T ss_pred EECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 35555566666 88899999999999999999999998754
No 320
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.61 E-value=3.2e-08 Score=63.91 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=28.4
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
+.+|..+.|.||+|+|||||+++++.......
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~ 54 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLRMIAGIMQPSS 54 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 77899999999999999999999999875443
No 321
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.61 E-value=2.6e-08 Score=72.54 Aligned_cols=44 Identities=25% Similarity=0.312 Sum_probs=36.2
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.|++..+++++ +..|..+.|.||+|||||||+++++..+.....
T Consensus 13 ~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G 59 (501)
T PRK10762 13 AFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAG 59 (501)
T ss_pred EeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 46665677776 888999999999999999999999988754433
No 322
>PRK06526 transposase; Provisional
Probab=98.61 E-value=3.7e-08 Score=66.34 Aligned_cols=29 Identities=34% Similarity=0.607 Sum_probs=25.6
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
+..+.+++|+||||+|||||+.+++.++.
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHHH
Confidence 55678999999999999999999988764
No 323
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.61 E-value=4.4e-08 Score=65.09 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=29.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
-.++|.|||||||||+++.+|+.++.+++.++.
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gd 39 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMGN 39 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEECCh
Confidence 359999999999999999999999999887765
No 324
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.61 E-value=3.4e-08 Score=61.68 Aligned_cols=43 Identities=28% Similarity=0.460 Sum_probs=33.1
Q ss_pred Cccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 3 FSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 3 ~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
|.+..+..++ +.++..+.|.||+|+|||||+++++..+.....
T Consensus 9 ~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G 54 (157)
T cd00267 9 YGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSG 54 (157)
T ss_pred eCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcc
Confidence 4333344444 788999999999999999999999988764433
No 325
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.61 E-value=3e-08 Score=64.31 Aligned_cols=39 Identities=26% Similarity=0.442 Sum_probs=32.7
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
.|++..+.+++ +.+|..+.|.||+|+|||||+++++...
T Consensus 9 ~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (200)
T cd03217 9 SVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHP 50 (200)
T ss_pred EeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45555566666 7889999999999999999999999874
No 326
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.61 E-value=3.3e-08 Score=66.10 Aligned_cols=40 Identities=20% Similarity=0.366 Sum_probs=33.1
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.|++..+.+++ +.+|..+.|.||+|||||||+++++....
T Consensus 14 ~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~ 56 (251)
T PRK14244 14 WYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMND 56 (251)
T ss_pred EECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 34444566666 78899999999999999999999998764
No 327
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.61 E-value=3.1e-08 Score=67.20 Aligned_cols=40 Identities=18% Similarity=0.367 Sum_probs=33.1
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++|+....
T Consensus 29 ~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~ 71 (274)
T PRK14265 29 FYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMND 71 (274)
T ss_pred EeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 35544566666 88899999999999999999999998754
No 328
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.61 E-value=4.5e-07 Score=67.81 Aligned_cols=44 Identities=16% Similarity=0.146 Sum_probs=31.8
Q ss_pred EEEEE-eeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 58 VLIFT-TSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 58 ~~~~~-~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
+++++ +++.+..+++++.+|+... .++..+.+++..++.+...+
T Consensus 324 ~VLI~aTt~~~~~l~~aLrSR~~~i-~~~pls~edi~~Il~~~a~~ 368 (615)
T TIGR02903 324 FVLIGATTRDPEEINPALRSRCAEV-FFEPLTPEDIALIVLNAAEK 368 (615)
T ss_pred EEEEEeccccccccCHHHHhceeEE-EeCCCCHHHHHHHHHHHHHH
Confidence 34444 4555778899988898754 55666788999999887654
No 329
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.61 E-value=3.7e-07 Score=69.03 Aligned_cols=82 Identities=24% Similarity=0.291 Sum_probs=57.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCcc---------------------ccce--------------------------
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQ---------------------TPQA-------------------------- 49 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~~~~---------------------~~~~-------------------------- 49 (105)
..++++||+|+|||++|+++|+.+.|... ..+.
T Consensus 41 HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~K 120 (725)
T PRK07133 41 HAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYK 120 (725)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCE
Confidence 35799999999999999999999877421 0000
Q ss_pred -------------------eeecc-cCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHH
Q psy4924 50 -------------------IFFKK-YPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSC 99 (105)
Q Consensus 50 -------------------~~~~~-~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~ 99 (105)
..++. .+.+.++.+|+.++.+.+.+.+|+. .+.+..++.+++...+...
T Consensus 121 V~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq-~ieF~~L~~eeI~~~L~~i 189 (725)
T PRK07133 121 IYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQ-RFNFRRISEDEIVSRLEFI 189 (725)
T ss_pred EEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhce-eEEccCCCHHHHHHHHHHH
Confidence 02222 3456677777777888888888996 5567777777776666543
No 330
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.61 E-value=3.9e-08 Score=65.65 Aligned_cols=40 Identities=28% Similarity=0.508 Sum_probs=33.5
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.|++..+.+++ +.+|..+.|.||+|+|||||+++|+...+
T Consensus 12 ~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (250)
T PRK14266 12 YFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMND 54 (250)
T ss_pred EeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 35555567777 78899999999999999999999998754
No 331
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.61 E-value=5.1e-08 Score=61.58 Aligned_cols=33 Identities=33% Similarity=0.490 Sum_probs=30.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
..++|+|++||||||+++.+|..++.++++.+.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~ 35 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQ 35 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccH
Confidence 468999999999999999999999999988774
No 332
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.61 E-value=2.6e-08 Score=74.45 Aligned_cols=42 Identities=31% Similarity=0.419 Sum_probs=35.9
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.|++..+++++ +.+|..+.|+||+|||||||+++|+......
T Consensus 12 ~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~ 56 (635)
T PRK11147 12 SFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLD 56 (635)
T ss_pred EeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC
Confidence 56666777777 8899999999999999999999999876543
No 333
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.61 E-value=3.2e-08 Score=67.03 Aligned_cols=40 Identities=28% Similarity=0.448 Sum_probs=33.4
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.|++..+.+++ +.+|..+.|.||+|||||||+++++....
T Consensus 34 ~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~ 76 (272)
T PRK14236 34 FYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMND 76 (272)
T ss_pred EECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 35555566666 88899999999999999999999998764
No 334
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.60 E-value=3.2e-08 Score=66.09 Aligned_cols=39 Identities=23% Similarity=0.352 Sum_probs=32.2
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++++...
T Consensus 12 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14245 12 WYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMN 53 (250)
T ss_pred EECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhh
Confidence 35555566665 8889999999999999999999999764
No 335
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.60 E-value=3.3e-08 Score=66.41 Aligned_cols=40 Identities=25% Similarity=0.453 Sum_probs=33.3
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++|+....
T Consensus 21 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 63 (258)
T PRK14268 21 WYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMND 63 (258)
T ss_pred EeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35555566666 78899999999999999999999998664
No 336
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.60 E-value=4.4e-08 Score=64.18 Aligned_cols=43 Identities=26% Similarity=0.333 Sum_probs=34.4
Q ss_pred CCc-cccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 2 KFS-HSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 2 ~~~-~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
.|+ +..+++++ +.+|..+.|.||+|||||||+++|+.......
T Consensus 9 ~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~ 55 (218)
T cd03290 9 SWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLE 55 (218)
T ss_pred ecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC
Confidence 354 23466666 88899999999999999999999998875443
No 337
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.60 E-value=2.7e-08 Score=70.88 Aligned_cols=44 Identities=30% Similarity=0.469 Sum_probs=37.0
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.|++..+.+++ +.+|..+.|.||||+|||||+++++..+.....
T Consensus 12 ~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG 58 (402)
T PRK09536 12 EFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAG 58 (402)
T ss_pred EECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCc
Confidence 46666677777 889999999999999999999999988765443
No 338
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.60 E-value=4.1e-08 Score=64.95 Aligned_cols=39 Identities=21% Similarity=0.415 Sum_probs=32.4
Q ss_pred ccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 6 SKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 6 ~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
..+.+++ +.+|..+.|.||+|||||||+++|+.......
T Consensus 14 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~ 55 (236)
T cd03253 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSS 55 (236)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC
Confidence 3466665 78899999999999999999999998775433
No 339
>PRK08181 transposase; Validated
Probab=98.60 E-value=3.8e-08 Score=66.76 Aligned_cols=30 Identities=37% Similarity=0.597 Sum_probs=26.0
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
+..+..++|+||+|+|||||+.+++.++..
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~ 132 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAAAIGLALIE 132 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHHHHHHHHHH
Confidence 456788999999999999999999987643
No 340
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.60 E-value=3.4e-08 Score=72.37 Aligned_cols=41 Identities=24% Similarity=0.313 Sum_probs=35.2
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++++..+..
T Consensus 10 ~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p 53 (530)
T PRK15064 10 QFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEP 53 (530)
T ss_pred EeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46666677777 889999999999999999999999987754
No 341
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=3.2e-07 Score=66.85 Aligned_cols=44 Identities=11% Similarity=0.169 Sum_probs=29.8
Q ss_pred CEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 57 NVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 57 ~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
..+++.+++..+.+...+.+|+. .+.+..++.+++...+.+..+
T Consensus 149 ~~v~Il~tt~~~kl~~tI~SRc~-~i~f~~ls~~el~~~L~~i~k 192 (486)
T PRK14953 149 RTIFILCTTEYDKIPPTILSRCQ-RFIFSKPTKEQIKEYLKRICN 192 (486)
T ss_pred CeEEEEEECCHHHHHHHHHHhce-EEEcCCCCHHHHHHHHHHHHH
Confidence 45556666666777777788886 456677777877776666543
No 342
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.60 E-value=3.9e-08 Score=65.76 Aligned_cols=40 Identities=23% Similarity=0.446 Sum_probs=33.2
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.|++..+.+++ +.+|..+.|.||+|+|||||+++|+....
T Consensus 13 ~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 55 (251)
T PRK14270 13 WYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred EECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 35555566666 78899999999999999999999998754
No 343
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.60 E-value=4.1e-08 Score=66.47 Aligned_cols=38 Identities=24% Similarity=0.380 Sum_probs=32.4
Q ss_pred ccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 6 SKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 6 ~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
..+++++ +.+|..+.|.||+|||||||+++++......
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~ 62 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ 62 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 3566766 7889999999999999999999999887543
No 344
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.60 E-value=3.2e-08 Score=63.94 Aligned_cols=35 Identities=26% Similarity=0.472 Sum_probs=30.9
Q ss_pred ccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 6 SKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 6 ~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
..+.+++ +.+|..+.|.||+|||||||+++++...
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3466666 8889999999999999999999999877
No 345
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.60 E-value=4.2e-08 Score=62.98 Aligned_cols=30 Identities=37% Similarity=0.628 Sum_probs=26.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
+..++|.||+||||||+++.|+...+.++.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~ 31 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQLL 31 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCeEE
Confidence 568999999999999999999998876543
No 346
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.60 E-value=3.2e-08 Score=67.50 Aligned_cols=39 Identities=21% Similarity=0.377 Sum_probs=32.6
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++|+...
T Consensus 48 ~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 89 (286)
T PRK14275 48 YYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMN 89 (286)
T ss_pred EECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 35555566666 8899999999999999999999999864
No 347
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.59 E-value=3.1e-08 Score=67.28 Aligned_cols=40 Identities=25% Similarity=0.434 Sum_probs=34.0
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.|++..+++++ +.+|..+.|.||+|+|||||+++|+....
T Consensus 30 ~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 72 (276)
T PRK14271 30 GFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMND 72 (276)
T ss_pred EECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 45555667776 88999999999999999999999998764
No 348
>PRK12377 putative replication protein; Provisional
Probab=98.59 E-value=3.9e-08 Score=66.05 Aligned_cols=28 Identities=32% Similarity=0.591 Sum_probs=25.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
...++|+||||+||||||.++++.+...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~ 128 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAK 128 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999998644
No 349
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.59 E-value=6.5e-07 Score=69.14 Aligned_cols=33 Identities=18% Similarity=0.124 Sum_probs=26.3
Q ss_pred CHHhhcccceEEEeCCCCHHHHHHHHHHHHHHh
Q psy4924 71 DLAFLDRADIKQYIGFPSAAAIFNIFSSCVEEL 103 (105)
Q Consensus 71 d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~~l 103 (105)
.++++.|++..+.+..++.+.+..|++..+.++
T Consensus 750 ~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l 782 (857)
T PRK10865 750 RPEFINRIDEVVVFHPLGEQHIASIAQIQLQRL 782 (857)
T ss_pred cHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHH
Confidence 356778888887778888888999988888765
No 350
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.59 E-value=4.5e-07 Score=69.61 Aligned_cols=26 Identities=38% Similarity=0.598 Sum_probs=23.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.+||+||+|+||||+++++|+.++|.
T Consensus 39 a~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 39 AYLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 48999999999999999999999863
No 351
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.59 E-value=3.8e-08 Score=63.46 Aligned_cols=35 Identities=29% Similarity=0.437 Sum_probs=29.8
Q ss_pred ccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 6 SKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 6 ~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
..+.+++ +.++..+.|.||+|+|||||+++++...
T Consensus 20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3466666 7889999999999999999999999753
No 352
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.59 E-value=3.2e-08 Score=72.22 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=35.5
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.|++..+++++ +..|..+.|.||+|||||||+++++......
T Consensus 14 ~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~ 58 (510)
T PRK09700 14 SFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT 58 (510)
T ss_pred EcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC
Confidence 46666677777 8899999999999999999999999887543
No 353
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.59 E-value=3.3e-08 Score=69.59 Aligned_cols=43 Identities=26% Similarity=0.380 Sum_probs=35.1
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
.|++..+.+++ +..+..+.|.||+|||||||+++||.......
T Consensus 14 ~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~ 59 (362)
T TIGR03258 14 AYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAG 59 (362)
T ss_pred EECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 46655566666 78899999999999999999999998765443
No 354
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.59 E-value=3.2e-08 Score=67.50 Aligned_cols=40 Identities=20% Similarity=0.450 Sum_probs=33.8
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.|++..+++++ +.+|..+.|.||+|+|||||+++|+....
T Consensus 48 ~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 90 (285)
T PRK14254 48 FYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMND 90 (285)
T ss_pred EECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 45555567776 88999999999999999999999998764
No 355
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=4.6e-07 Score=67.32 Aligned_cols=26 Identities=38% Similarity=0.616 Sum_probs=23.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.++|+||+|+||||+|+++|+.+++.
T Consensus 37 a~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 37 AYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccc
Confidence 47999999999999999999999864
No 356
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.59 E-value=4.3e-07 Score=70.02 Aligned_cols=23 Identities=52% Similarity=0.732 Sum_probs=21.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
.++|+||+|+|||++|+++|..+
T Consensus 598 ~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 598 VFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999988
No 357
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=98.58 E-value=3.9e-08 Score=65.69 Aligned_cols=38 Identities=24% Similarity=0.511 Sum_probs=31.9
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++++..
T Consensus 16 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 16 SVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred EeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 35544566666 788999999999999999999999985
No 358
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.58 E-value=3.6e-08 Score=66.45 Aligned_cols=40 Identities=23% Similarity=0.402 Sum_probs=33.6
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++++....
T Consensus 25 ~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 67 (265)
T PRK14252 25 YYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHD 67 (265)
T ss_pred EECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC
Confidence 45555567776 88999999999999999999999998764
No 359
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.58 E-value=8.1e-07 Score=58.46 Aligned_cols=28 Identities=25% Similarity=0.548 Sum_probs=25.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
...|.+.|+|||||||+++.|+..++..
T Consensus 8 ~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 8 VIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 3578899999999999999999999965
No 360
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.58 E-value=5.1e-08 Score=63.69 Aligned_cols=30 Identities=33% Similarity=0.632 Sum_probs=27.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCccccc
Q psy4924 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQ 48 (105)
Q Consensus 19 ill~Gp~GsGKT~l~~~la~~~~~~~~~~~ 48 (105)
++++|||||||||+++.||..++.+++...
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~g 31 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTG 31 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehh
Confidence 789999999999999999999998887654
No 361
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.58 E-value=5.3e-08 Score=61.28 Aligned_cols=32 Identities=31% Similarity=0.697 Sum_probs=28.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
.+.+.|||||||||+++.||+.++.+++....
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~ 33 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLVSAGT 33 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCceeeccH
Confidence 47899999999999999999999999887443
No 362
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.58 E-value=4.1e-08 Score=72.41 Aligned_cols=42 Identities=17% Similarity=0.141 Sum_probs=35.8
Q ss_pred CCc-cccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 2 KFS-HSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 2 ~~~-~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.|+ +..+++++ +..|..+.|.||+|||||||+++|+..+...
T Consensus 15 ~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~ 60 (556)
T PRK11819 15 VVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF 60 (556)
T ss_pred EeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 466 56677777 8899999999999999999999999887543
No 363
>PRK14528 adenylate kinase; Provisional
Probab=98.58 E-value=7.1e-08 Score=62.08 Aligned_cols=33 Identities=30% Similarity=0.611 Sum_probs=28.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
+.+++.|||||||||+++.++..++.+++....
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~ 34 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGD 34 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCH
Confidence 468999999999999999999999888765543
No 364
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.58 E-value=5.5e-08 Score=68.19 Aligned_cols=27 Identities=33% Similarity=0.614 Sum_probs=25.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
.+.++|+|||||||||+|++|++.++.
T Consensus 78 r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 78 KQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 467899999999999999999999976
No 365
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.58 E-value=3.7e-08 Score=65.61 Aligned_cols=39 Identities=21% Similarity=0.399 Sum_probs=32.7
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
.|++..+.+++ +.+|..+.|.||+|||||||+++++...
T Consensus 10 ~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (248)
T PRK09580 10 SVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGRE 51 (248)
T ss_pred EeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCc
Confidence 35555566666 7889999999999999999999999874
No 366
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.58 E-value=4.7e-08 Score=66.07 Aligned_cols=36 Identities=17% Similarity=0.315 Sum_probs=31.1
Q ss_pred ccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 8 VKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 8 ~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
+.+++ +.+|..+.|.||+|||||||+++|+......
T Consensus 24 ~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~ 62 (269)
T PRK13648 24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK 62 (269)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 56666 7889999999999999999999999876543
No 367
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.57 E-value=5.6e-08 Score=64.39 Aligned_cols=37 Identities=30% Similarity=0.372 Sum_probs=31.7
Q ss_pred cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 7 KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 7 ~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.+.+++ +.+|..+.|.||+|||||||+++++......
T Consensus 16 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~ 55 (237)
T cd03252 16 VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE 55 (237)
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC
Confidence 466666 7889999999999999999999999887543
No 368
>PRK09183 transposase/IS protein; Provisional
Probab=98.57 E-value=5.9e-08 Score=65.52 Aligned_cols=29 Identities=38% Similarity=0.567 Sum_probs=25.7
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
+..+..++|+||||+|||||+.+++....
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 56788999999999999999999987754
No 369
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.57 E-value=4.6e-08 Score=66.14 Aligned_cols=37 Identities=27% Similarity=0.368 Sum_probs=31.8
Q ss_pred ccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 6 SKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 6 ~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
..+.+++ +.+|..+.|.||+|||||||+++|+.....
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 64 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP 64 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4566776 888999999999999999999999987653
No 370
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.57 E-value=3.8e-08 Score=69.65 Aligned_cols=43 Identities=21% Similarity=0.302 Sum_probs=34.2
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
.|++..+.+++ +..|..+.|.||+|||||||+++||......-
T Consensus 28 ~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~ 73 (377)
T PRK11607 28 SFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTA 73 (377)
T ss_pred EECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc
Confidence 45554555555 78899999999999999999999998775443
No 371
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.57 E-value=3.5e-08 Score=71.97 Aligned_cols=41 Identities=27% Similarity=0.415 Sum_probs=34.9
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
.|++..+++++ +..|..+.|.||+|||||||+++|+..+..
T Consensus 14 ~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 57 (506)
T PRK13549 14 TFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPH 57 (506)
T ss_pred EeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46666677777 888999999999999999999999987753
No 372
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.57 E-value=4.3e-07 Score=66.39 Aligned_cols=27 Identities=37% Similarity=0.594 Sum_probs=23.4
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
...+..++|+||||+|||++++.++..
T Consensus 208 a~~g~~vlliG~pGsGKTtlar~l~~l 234 (499)
T TIGR00368 208 AAGGHNLLLFGPPGSGKTMLASRLQGI 234 (499)
T ss_pred ccCCCEEEEEecCCCCHHHHHHHHhcc
Confidence 445778999999999999999999863
No 373
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.57 E-value=3.8e-08 Score=71.88 Aligned_cols=42 Identities=29% Similarity=0.373 Sum_probs=35.2
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.|++..+++++ +..|..+.|.||+|||||||+++++..+...
T Consensus 20 ~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~ 64 (510)
T PRK15439 20 QYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD 64 (510)
T ss_pred EeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 46665677777 8889999999999999999999999877543
No 374
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.57 E-value=9.2e-08 Score=61.83 Aligned_cols=46 Identities=22% Similarity=0.345 Sum_probs=36.6
Q ss_pred CCcc-ccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcccc
Q psy4924 2 KFSH-SKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTP 47 (105)
Q Consensus 2 ~~~~-~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~ 47 (105)
.|.. ..++.++ ++++.-+++.||||+|||||++.|..+.......+
T Consensus 10 ~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i 59 (223)
T COG2884 10 AYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59 (223)
T ss_pred hcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceE
Confidence 4533 3366666 88999999999999999999999999887665443
No 375
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.57 E-value=6.9e-07 Score=68.97 Aligned_cols=32 Identities=22% Similarity=0.134 Sum_probs=25.0
Q ss_pred HHhhcccceEEEeCCCCHHHHHHHHHHHHHHh
Q psy4924 72 LAFLDRADIKQYIGFPSAAAIFNIFSSCVEEL 103 (105)
Q Consensus 72 ~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~~l 103 (105)
+.++.|++..+.+..++.+.+..|+...+..+
T Consensus 748 pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l 779 (852)
T TIGR03346 748 PEFLNRIDEIVVFHPLGREQIARIVEIQLGRL 779 (852)
T ss_pred HHHhcCcCeEEecCCcCHHHHHHHHHHHHHHH
Confidence 44666888888888888999888888887654
No 376
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.57 E-value=4.5e-08 Score=66.46 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=31.5
Q ss_pred cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 7 KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 7 ~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.+++++ +.+|..+.|.||+|||||||+++|+......
T Consensus 21 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~ 60 (280)
T PRK13649 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT 60 (280)
T ss_pred ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 366666 7889999999999999999999999876543
No 377
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.57 E-value=5.4e-08 Score=66.04 Aligned_cols=42 Identities=21% Similarity=0.314 Sum_probs=34.2
Q ss_pred CCc-cccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 2 KFS-HSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 2 ~~~-~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.|+ +..+++++ +.+|..+.|.||+|+|||||+++++..+...
T Consensus 10 ~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 55 (274)
T PRK13644 10 SYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ 55 (274)
T ss_pred EcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 353 34466766 8899999999999999999999999877543
No 378
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=3.3e-07 Score=68.33 Aligned_cols=83 Identities=14% Similarity=0.169 Sum_probs=57.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCc------------------------cccce-----------------------
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRL------------------------QTPQA----------------------- 49 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~~~------------------------~~~~~----------------------- 49 (105)
..++|+||+|+||||+|+.+|+.+.+.. +.++.
T Consensus 39 ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g 118 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEG 118 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcC
Confidence 3588999999999999999999998741 11110
Q ss_pred ----------------------eeec-ccCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHH
Q psy4924 50 ----------------------IFFK-KYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCV 100 (105)
Q Consensus 50 ----------------------~~~~-~~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~ 100 (105)
..++ ..+.+.+|.+|+.+..+...+.+|+.. +.+..++.+++...+.+.+
T Consensus 119 ~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~-i~F~pLs~~eL~~~L~~il 191 (624)
T PRK14959 119 RYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQH-FTFTRLSEAGLEAHLTKVL 191 (624)
T ss_pred CceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhc-cccCCCCHHHHHHHHHHHH
Confidence 0222 224566777777777777778888864 4567777777776666543
No 379
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.57 E-value=7.2e-07 Score=68.63 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=25.8
Q ss_pred HhhcccceEEEeCCCCHHHHHHHHHHHHHHh
Q psy4924 73 AFLDRADIKQYIGFPSAAAIFNIFSSCVEEL 103 (105)
Q Consensus 73 ~~~~r~~~~~~~~~~~~~~~~~i~~~~~~~l 103 (105)
.++.|.|-++.+...+.+++..|+++.+.++
T Consensus 705 eflnRid~ii~F~pL~~~~l~~Iv~~~l~~l 735 (821)
T CHL00095 705 EFLNRLDEIIVFRQLTKNDVWEIAEIMLKNL 735 (821)
T ss_pred HHhccCCeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 4677888888888888999999999888765
No 380
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.57 E-value=5.7e-08 Score=64.24 Aligned_cols=35 Identities=23% Similarity=0.365 Sum_probs=29.9
Q ss_pred ccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 8 VKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 8 ~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
+++++ +..|..+.|.||||||||||+..++.....
T Consensus 20 ~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p 57 (226)
T COG1136 20 ALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP 57 (226)
T ss_pred ecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 45555 888999999999999999999999976654
No 381
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.56 E-value=6.6e-07 Score=66.67 Aligned_cols=28 Identities=29% Similarity=0.466 Sum_probs=25.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
..++|+||+|+||||+|+++|+.+++..
T Consensus 47 ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~ 74 (598)
T PRK09111 47 QAFMLTGVRGVGKTTTARILARALNYEG 74 (598)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhCcCC
Confidence 3699999999999999999999998753
No 382
>PRK02496 adk adenylate kinase; Provisional
Probab=98.56 E-value=6.9e-08 Score=61.75 Aligned_cols=31 Identities=29% Similarity=0.532 Sum_probs=27.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCccccc
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQ 48 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~ 48 (105)
.+++.|||||||||+++.++..++.+.+...
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~~ 33 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHISTG 33 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEhH
Confidence 5899999999999999999999998777543
No 383
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.56 E-value=4.8e-08 Score=65.85 Aligned_cols=40 Identities=18% Similarity=0.314 Sum_probs=34.2
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.|++..+.+++ +.+|..+.|.||+|+|||||+++++..+.
T Consensus 17 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (261)
T PRK14263 17 FYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMND 59 (261)
T ss_pred EeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccc
Confidence 45655666766 88999999999999999999999998875
No 384
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.56 E-value=5.5e-08 Score=63.94 Aligned_cols=37 Identities=30% Similarity=0.465 Sum_probs=31.8
Q ss_pred cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 7 KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 7 ~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.+.+++ +.+|..+.|.||+|+|||||+++++..+...
T Consensus 22 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~ 61 (224)
T TIGR02324 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD 61 (224)
T ss_pred EEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 466666 7889999999999999999999999887543
No 385
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.56 E-value=5.2e-08 Score=65.84 Aligned_cols=39 Identities=18% Similarity=0.301 Sum_probs=32.9
Q ss_pred cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 7 KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 7 ~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.+++++ +.+|..+.|.||+|||||||+++|+..+.....
T Consensus 27 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G 68 (267)
T PRK15112 27 EAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSG 68 (267)
T ss_pred ceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCC
Confidence 466666 889999999999999999999999988765433
No 386
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.56 E-value=7.7e-08 Score=61.18 Aligned_cols=27 Identities=30% Similarity=0.572 Sum_probs=23.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
++.++|.|||||||||++++|+..++.
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 357899999999999999999998764
No 387
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.56 E-value=6.5e-08 Score=64.13 Aligned_cols=37 Identities=19% Similarity=0.318 Sum_probs=31.5
Q ss_pred cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 7 KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 7 ~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.+.+++ +.+|..+.|.||+|||||||+++++......
T Consensus 17 ~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~ 56 (238)
T cd03249 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT 56 (238)
T ss_pred cceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCC
Confidence 366665 8899999999999999999999999887543
No 388
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.56 E-value=5e-08 Score=71.53 Aligned_cols=42 Identities=21% Similarity=0.373 Sum_probs=34.5
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.|++..+++++ +..|..+.|.||+|||||||+++++..+...
T Consensus 328 ~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~ 372 (530)
T PRK15064 328 GFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPD 372 (530)
T ss_pred eeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 45555567666 8889999999999999999999999876543
No 389
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.56 E-value=5.8e-08 Score=71.03 Aligned_cols=45 Identities=20% Similarity=0.297 Sum_probs=36.4
Q ss_pred CCcc-ccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccc
Q psy4924 2 KFSH-SKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQT 46 (105)
Q Consensus 2 ~~~~-~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~ 46 (105)
.|.+ ..+++++ +++|..+.|+||+|||||||++.+++......++
T Consensus 343 ~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~ 391 (529)
T TIGR02868 343 GYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGE 391 (529)
T ss_pred ecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence 4543 3477777 8899999999999999999999999887655433
No 390
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.55 E-value=5.1e-08 Score=71.29 Aligned_cols=39 Identities=31% Similarity=0.381 Sum_probs=33.7
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
.|++..+++++ +..|..+.|.||+|||||||+++++...
T Consensus 9 ~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 50 (520)
T TIGR03269 9 KFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMD 50 (520)
T ss_pred EECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 46655677776 8889999999999999999999999975
No 391
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.55 E-value=4.7e-08 Score=68.32 Aligned_cols=38 Identities=18% Similarity=0.276 Sum_probs=32.3
Q ss_pred ccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 6 SKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 6 ~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
..+++++ +.+|..+.|.||+|||||||+++++..+...
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~ 58 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT 58 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 3466666 8899999999999999999999999877543
No 392
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.55 E-value=7.1e-08 Score=63.71 Aligned_cols=46 Identities=22% Similarity=0.328 Sum_probs=38.6
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcccc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTP 47 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~ 47 (105)
.|+...+++.+ ++.+..+.|.||||+||||++++++.........+
T Consensus 12 ~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I 60 (237)
T COG0410 12 GYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRI 60 (237)
T ss_pred cccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeE
Confidence 46777777777 88899999999999999999999999887654443
No 393
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=9.8e-08 Score=61.48 Aligned_cols=43 Identities=23% Similarity=0.318 Sum_probs=34.9
Q ss_pred cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 7 KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 7 ~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
.++.++ +.+|.-+.+.||+|+|||||+|++|..+.....++..
T Consensus 16 ~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~ 61 (209)
T COG4133 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYW 61 (209)
T ss_pred eeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEe
Confidence 344444 7789999999999999999999999998876655443
No 394
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=3.1e-07 Score=68.19 Aligned_cols=27 Identities=33% Similarity=0.546 Sum_probs=24.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
..++|+||+|+||||+++++|+.+++.
T Consensus 39 hayLf~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 39 HAFLFTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhcCC
Confidence 357999999999999999999999864
No 395
>PRK00279 adk adenylate kinase; Reviewed
Probab=98.55 E-value=8.2e-08 Score=62.93 Aligned_cols=32 Identities=34% Similarity=0.564 Sum_probs=28.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
.++++|||||||||+++.||..++.+++....
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~d 33 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGD 33 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEECCc
Confidence 48999999999999999999999998887643
No 396
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.55 E-value=5.7e-08 Score=65.54 Aligned_cols=39 Identities=26% Similarity=0.284 Sum_probs=32.9
Q ss_pred ccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 6 SKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 6 ~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
..+.+++ +.+|..+.|.||+|||||||+++|+.......
T Consensus 24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~ 65 (265)
T TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQ 65 (265)
T ss_pred eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 3466666 88999999999999999999999998875443
No 397
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.55 E-value=6.8e-08 Score=63.58 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=32.6
Q ss_pred cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 7 KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 7 ~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.+.+++ +.+|..+.|.||+|+|||||+++++........
T Consensus 28 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 69 (226)
T cd03248 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGG 69 (226)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCc
Confidence 366666 888999999999999999999999988754433
No 398
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.55 E-value=5.8e-08 Score=65.94 Aligned_cols=44 Identities=25% Similarity=0.377 Sum_probs=34.9
Q ss_pred CCc-cccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 2 KFS-HSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 2 ~~~-~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.|+ ...+.+++ +.+|..+.|.||+|+|||||+++|+..+.....
T Consensus 12 ~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G 59 (277)
T PRK13652 12 SYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSG 59 (277)
T ss_pred EeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 453 33466766 888999999999999999999999987764433
No 399
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.55 E-value=7.5e-08 Score=63.12 Aligned_cols=38 Identities=32% Similarity=0.336 Sum_probs=32.1
Q ss_pred cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 7 KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 7 ~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
.+.+++ +.+|..+.|.||+|+|||||+++++.......
T Consensus 18 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~ 58 (221)
T cd03244 18 PVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS 58 (221)
T ss_pred ccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCC
Confidence 466666 88899999999999999999999998765433
No 400
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.55 E-value=5.7e-08 Score=63.32 Aligned_cols=33 Identities=21% Similarity=0.367 Sum_probs=28.9
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
+.+|..+.|.||+|||||||+++++......-.
T Consensus 21 i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G 53 (211)
T cd03298 21 FAQGEITAIVGPSGSGKSTLLNLIAGFETPQSG 53 (211)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 788999999999999999999999988764433
No 401
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.55 E-value=6.1e-08 Score=64.99 Aligned_cols=37 Identities=27% Similarity=0.450 Sum_probs=31.5
Q ss_pred ccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 6 SKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 6 ~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
..+++++ +.+|..+.|.||+|+|||||++.++.....
T Consensus 16 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 55 (254)
T PRK10418 16 QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPA 55 (254)
T ss_pred cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3456666 788999999999999999999999988754
No 402
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=98.54 E-value=1.3e-07 Score=57.92 Aligned_cols=31 Identities=42% Similarity=0.701 Sum_probs=28.3
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
+.++..++|.|+.|+||||+++.+++.++..
T Consensus 19 l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 19 LDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 5678899999999999999999999999865
No 403
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.54 E-value=7.1e-07 Score=57.66 Aligned_cols=22 Identities=27% Similarity=0.622 Sum_probs=20.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh
Q psy4924 19 VLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 19 ill~Gp~GsGKT~l~~~la~~~ 40 (105)
+.|.||+||||||++++++..+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999987
No 404
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.54 E-value=8.1e-08 Score=62.98 Aligned_cols=34 Identities=18% Similarity=0.306 Sum_probs=29.1
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccc
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQT 46 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~ 46 (105)
++.|..+.|.||+|||||||+++++........+
T Consensus 10 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~ 43 (213)
T PRK15177 10 MGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGD 43 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCC
Confidence 7789999999999999999999999876544443
No 405
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=9.9e-07 Score=67.06 Aligned_cols=88 Identities=28% Similarity=0.305 Sum_probs=63.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhC---CCccccce--------------------------------------------
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLS---IRLQTPQA-------------------------------------------- 49 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~---~~~~~~~~-------------------------------------------- 49 (105)
..+++.||+|+|||-||++||..+- ..++..+.
T Consensus 522 gsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDE 601 (786)
T COG0542 522 GSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDE 601 (786)
T ss_pred eEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEech
Confidence 3689999999999999999999987 33433332
Q ss_pred --------------------e-----eecccCCEEEEEeeCCCC----------------------------CCCHHhhc
Q psy4924 50 --------------------I-----FFKKYPNVLIFTTSNLTG----------------------------AIDLAFLD 76 (105)
Q Consensus 50 --------------------~-----~~~~~~~~~~~~~~n~~~----------------------------~~d~~~~~ 76 (105)
+ .-..+.+.++|+|||--. ...+.|+.
T Consensus 602 IEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN 681 (786)
T COG0542 602 IEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN 681 (786)
T ss_pred hhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh
Confidence 0 112235677899988531 12335677
Q ss_pred ccceEEEeCCCCHHHHHHHHHHHHHHhh
Q psy4924 77 RADIKQYIGFPSAAAIFNIFSSCVEELK 104 (105)
Q Consensus 77 r~~~~~~~~~~~~~~~~~i~~~~~~~l~ 104 (105)
|.|-++.+...+.+.+.+|+...+.++.
T Consensus 682 Rid~II~F~~L~~~~l~~Iv~~~L~~l~ 709 (786)
T COG0542 682 RIDEIIPFNPLSKEVLERIVDLQLNRLA 709 (786)
T ss_pred hcccEEeccCCCHHHHHHHHHHHHHHHH
Confidence 8887888888889999999988887653
No 406
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.54 E-value=1.1e-06 Score=62.05 Aligned_cols=25 Identities=52% Similarity=0.759 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
+..++|+||||+|||++++.+++++
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999998876
No 407
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.54 E-value=6.1e-08 Score=72.60 Aligned_cols=44 Identities=23% Similarity=0.276 Sum_probs=35.9
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++|+.......+
T Consensus 321 ~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G 367 (638)
T PRK10636 321 GYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSG 367 (638)
T ss_pred EeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 45655667776 888999999999999999999999987754433
No 408
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.54 E-value=6.3e-08 Score=65.69 Aligned_cols=38 Identities=24% Similarity=0.296 Sum_probs=32.5
Q ss_pred ccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 6 SKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 6 ~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
..+.+++ +.+|..+.|.||+|||||||+++++..+...
T Consensus 18 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 58 (274)
T PRK13647 18 TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ 58 (274)
T ss_pred CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 4566776 8899999999999999999999999877543
No 409
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.54 E-value=1.1e-07 Score=60.74 Aligned_cols=32 Identities=22% Similarity=0.366 Sum_probs=27.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCcccc
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTP 47 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~ 47 (105)
|..+.+.|||||||||++++++..++..+++-
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~g 34 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFSAKFIDG 34 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCEEECC
Confidence 67899999999999999999999987655443
No 410
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.53 E-value=6.4e-08 Score=65.17 Aligned_cols=41 Identities=22% Similarity=0.459 Sum_probs=34.1
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
.|++..+++++ +.+|..+.|.||+|+|||||+++++.....
T Consensus 16 ~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~ 59 (261)
T PRK14258 16 YYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNEL 59 (261)
T ss_pred EeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCC
Confidence 35544566666 889999999999999999999999988763
No 411
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.53 E-value=5.6e-08 Score=68.17 Aligned_cols=42 Identities=21% Similarity=0.344 Sum_probs=32.2
Q ss_pred CCccccccccc-ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 2 KFSHSKVKSNI-ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 2 ~~~~~~~~~~~-~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.|++..+.-++ +..|..+.|.||+|||||||+++|+......
T Consensus 9 ~~~~~~~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~ 51 (352)
T PRK11144 9 QLGDLCLTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ 51 (352)
T ss_pred EeCCEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 45543332233 7889999999999999999999999877543
No 412
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.53 E-value=8e-07 Score=58.68 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=21.1
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 19 VLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 19 ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
+.|.|||||||||+++.|+..+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHh
Confidence 57899999999999999999884
No 413
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.53 E-value=6.9e-08 Score=67.20 Aligned_cols=28 Identities=39% Similarity=0.478 Sum_probs=25.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
....++|+||+|+|||||+.++|.++-.
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~ 209 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLD 209 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4578999999999999999999998853
No 414
>PRK08116 hypothetical protein; Validated
Probab=98.53 E-value=1e-07 Score=64.66 Aligned_cols=26 Identities=46% Similarity=0.595 Sum_probs=23.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
+.+++|+|++|+||||||.++++++.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~ 139 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELI 139 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999999874
No 415
>PLN02200 adenylate kinase family protein
Probab=98.53 E-value=1.1e-07 Score=63.39 Aligned_cols=33 Identities=18% Similarity=0.515 Sum_probs=28.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCccccc
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQ 48 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~ 48 (105)
+..+++.|||||||||+++.+|..++..++...
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~his~g 75 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFKHLSAG 75 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCeEEEcc
Confidence 457899999999999999999999998776653
No 416
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.53 E-value=7.4e-08 Score=70.98 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=35.1
Q ss_pred CCc-cccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 2 KFS-HSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 2 ~~~-~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.|+ +..+++++ +..|..+.|.||+|||||||+++|+......
T Consensus 13 ~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~ 58 (552)
T TIGR03719 13 VVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF 58 (552)
T ss_pred ecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 465 45577777 8899999999999999999999999876543
No 417
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.53 E-value=7.4e-08 Score=65.37 Aligned_cols=43 Identities=23% Similarity=0.323 Sum_probs=34.2
Q ss_pred CCc-cccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 2 KFS-HSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 2 ~~~-~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
.|+ ...+.+++ +.+|..+.|.||+|||||||+++++..+....
T Consensus 10 ~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~ 56 (275)
T PRK13639 10 SYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTS 56 (275)
T ss_pred EeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 453 23466666 88999999999999999999999998765433
No 418
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.53 E-value=5.6e-08 Score=70.65 Aligned_cols=44 Identities=23% Similarity=0.287 Sum_probs=36.1
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++++..+.....
T Consensus 7 ~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G 53 (491)
T PRK10982 7 SFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSG 53 (491)
T ss_pred EeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCce
Confidence 46665677777 788999999999999999999999987754433
No 419
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.53 E-value=7.5e-08 Score=65.73 Aligned_cols=39 Identities=28% Similarity=0.303 Sum_probs=32.9
Q ss_pred cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 7 KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 7 ~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.+.+++ +.+|..+.|.||+|+|||||+++|+..+.....
T Consensus 21 ~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G 62 (287)
T PRK13641 21 KGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62 (287)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 467776 889999999999999999999999987764433
No 420
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.52 E-value=1e-07 Score=68.14 Aligned_cols=32 Identities=34% Similarity=0.612 Sum_probs=28.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCcccc
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTP 47 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~ 47 (105)
...++|+||||||||++|+++|..++.++...
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~ 147 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIA 147 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCeEEe
Confidence 45899999999999999999999998777543
No 421
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.52 E-value=1.1e-07 Score=61.92 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=31.5
Q ss_pred cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 7 KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 7 ~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.+.+++ +.+|..+.|.||+|+|||||+++++......
T Consensus 22 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~ 61 (207)
T cd03369 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE 61 (207)
T ss_pred ccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 466666 7889999999999999999999999876543
No 422
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.52 E-value=1e-07 Score=60.96 Aligned_cols=31 Identities=29% Similarity=0.444 Sum_probs=26.5
Q ss_pred ccccc---ccCCceEEEEcCCCCCHHHHHHHHHH
Q psy4924 8 VKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQ 38 (105)
Q Consensus 8 ~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~ 38 (105)
+++++ +.+|..+.|.||||||||||++++..
T Consensus 10 ~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 10 NLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 44555 78899999999999999999999853
No 423
>PRK06762 hypothetical protein; Provisional
Probab=98.52 E-value=1.3e-07 Score=59.48 Aligned_cols=26 Identities=27% Similarity=0.719 Sum_probs=23.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
+..+++.|+|||||||+++.++..++
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~ 27 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLG 27 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999999984
No 424
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.52 E-value=7.2e-08 Score=66.37 Aligned_cols=40 Identities=20% Similarity=0.397 Sum_probs=33.1
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++|+....
T Consensus 54 ~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~ 96 (305)
T PRK14264 54 YYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMND 96 (305)
T ss_pred EeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 35555566666 78899999999999999999999998764
No 425
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.52 E-value=8.3e-08 Score=61.38 Aligned_cols=32 Identities=22% Similarity=0.231 Sum_probs=28.4
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
+.+|..+.|.||+|+|||||+++++.......
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~ 54 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAEALFGLRPPAS 54 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 77899999999999999999999998876443
No 426
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.51 E-value=7.9e-08 Score=63.57 Aligned_cols=33 Identities=27% Similarity=0.412 Sum_probs=28.8
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
+.+|..+.|.||+|||||||++.++........
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G 54 (232)
T PRK10771 22 VERGERVAILGPSGAGKSTLLNLIAGFLTPASG 54 (232)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 778999999999999999999999988764433
No 427
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.51 E-value=8.9e-08 Score=65.14 Aligned_cols=39 Identities=21% Similarity=0.235 Sum_probs=32.7
Q ss_pred cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 7 KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 7 ~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.+++++ +..|..+.|.||+|+|||||+++++..+.....
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G 62 (279)
T PRK13635 21 YALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG 62 (279)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc
Confidence 366666 888999999999999999999999988765433
No 428
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.51 E-value=6.3e-08 Score=70.49 Aligned_cols=40 Identities=28% Similarity=0.359 Sum_probs=34.1
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.|++..+++++ +..|..+.|.||+|||||||+++++....
T Consensus 10 ~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~ 52 (500)
T TIGR02633 10 TFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP 52 (500)
T ss_pred EeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46665677776 88899999999999999999999998764
No 429
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=9.4e-07 Score=66.13 Aligned_cols=27 Identities=41% Similarity=0.598 Sum_probs=24.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
..++|+||+|+|||++|+++|+.+.+.
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 458999999999999999999999874
No 430
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.51 E-value=7.6e-08 Score=72.04 Aligned_cols=43 Identities=23% Similarity=0.389 Sum_probs=35.1
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++|+..+....
T Consensus 328 ~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~ 373 (635)
T PRK11147 328 QIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADS 373 (635)
T ss_pred EECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC
Confidence 45555567766 88899999999999999999999998765433
No 431
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.51 E-value=1.3e-07 Score=55.89 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=22.8
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHH
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVA 37 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la 37 (105)
+..+..+.|.||||||||||++++.
T Consensus 12 i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 12 VYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 5668899999999999999999986
No 432
>PRK06921 hypothetical protein; Provisional
Probab=98.51 E-value=1.3e-07 Score=64.17 Aligned_cols=28 Identities=39% Similarity=0.552 Sum_probs=25.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
.+..++|+||+|+|||||+.++|+++..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~ 143 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMR 143 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhh
Confidence 3678999999999999999999998753
No 433
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.50 E-value=7.5e-08 Score=67.56 Aligned_cols=43 Identities=19% Similarity=0.318 Sum_probs=32.7
Q ss_pred CCccccccccc-ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 2 KFSHSKVKSNI-ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 2 ~~~~~~~~~~~-~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
.|++..+.-++ +..|..+.|.||+|||||||+++|+.......
T Consensus 8 ~~~~~~~~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~ 51 (354)
T TIGR02142 8 RLGDFSLDADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDE 51 (354)
T ss_pred EECCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 45544342222 77899999999999999999999998876443
No 434
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.50 E-value=1.3e-07 Score=65.22 Aligned_cols=29 Identities=31% Similarity=0.381 Sum_probs=25.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.+++++|+||+|+|||||+.++|+++...
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~ 183 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKK 183 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 46789999999999999999999998643
No 435
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.50 E-value=1.2e-06 Score=61.14 Aligned_cols=81 Identities=20% Similarity=0.281 Sum_probs=58.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCccc------------------------c------ce-----------------
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQT------------------------P------QA----------------- 49 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~~~~~------------------------~------~~----------------- 49 (105)
..++++||+|+|||++|+.+|+.+.+.... + ..
T Consensus 23 ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~~ 102 (328)
T PRK05707 23 HAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQTA 102 (328)
T ss_pred eeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhcc
Confidence 358999999999999999999999874210 0 00
Q ss_pred -------------------------eeeccc-CCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHH
Q psy4924 50 -------------------------IFFKKY-PNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSS 98 (105)
Q Consensus 50 -------------------------~~~~~~-~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~ 98 (105)
..+++. ++..++.+|+.++.+.+.+.+|+.. +.+..|+.++....+.+
T Consensus 103 ~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~-~~~~~~~~~~~~~~L~~ 176 (328)
T PRK05707 103 QLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQ-QACPLPSNEESLQWLQQ 176 (328)
T ss_pred ccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhcee-eeCCCcCHHHHHHHHHH
Confidence 033433 4577788888888899999999976 56677777766655554
No 436
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=4.1e-07 Score=64.78 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=23.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.++|+||+|+||||+|+++|+.+.+.
T Consensus 40 a~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 48899999999999999999999873
No 437
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.50 E-value=9.5e-08 Score=65.10 Aligned_cols=43 Identities=23% Similarity=0.326 Sum_probs=34.7
Q ss_pred CCc-cccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 2 KFS-HSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 2 ~~~-~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
.|+ +..+.+++ +..|..+.|.||+|+|||||+++++..+....
T Consensus 14 ~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~ 60 (283)
T PRK13636 14 NYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSS 60 (283)
T ss_pred EeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc
Confidence 453 34577776 88999999999999999999999998875433
No 438
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.50 E-value=1.3e-07 Score=63.77 Aligned_cols=28 Identities=39% Similarity=0.662 Sum_probs=25.9
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
+.+.+++|+||||+||||||.+++.++.
T Consensus 103 ~~~~nl~l~G~~G~GKThLa~Ai~~~l~ 130 (254)
T COG1484 103 ERGENLVLLGPPGVGKTHLAIAIGNELL 130 (254)
T ss_pred ccCCcEEEECCCCCcHHHHHHHHHHHHH
Confidence 3678999999999999999999999986
No 439
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.50 E-value=6.5e-08 Score=58.83 Aligned_cols=30 Identities=40% Similarity=0.569 Sum_probs=27.0
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
+.++..+.|+||+|||||||+++++.....
T Consensus 8 i~~g~~~~i~G~nGsGKStLl~~l~g~~~~ 37 (137)
T PF00005_consen 8 IKPGEIVAIVGPNGSGKSTLLKALAGLLPP 37 (137)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred EcCCCEEEEEccCCCccccceeeecccccc
Confidence 667999999999999999999999987754
No 440
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.49 E-value=8e-08 Score=70.02 Aligned_cols=42 Identities=26% Similarity=0.343 Sum_probs=34.9
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++++......
T Consensus 13 ~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~ 57 (501)
T PRK11288 13 TFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD 57 (501)
T ss_pred EECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 45555677777 8889999999999999999999999876543
No 441
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.49 E-value=1e-06 Score=60.49 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.+..+.|.||+||||||+++.++..+.
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345788999999999999999987775
No 442
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.49 E-value=9.6e-08 Score=67.71 Aligned_cols=43 Identities=26% Similarity=0.267 Sum_probs=35.5
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
.|+...+.+++ +..|..+.|.||||||||||+++|+..+....
T Consensus 33 ~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~ 78 (382)
T TIGR03415 33 ETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSR 78 (382)
T ss_pred hhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC
Confidence 45666666666 88899999999999999999999998776443
No 443
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.49 E-value=1.4e-07 Score=60.74 Aligned_cols=47 Identities=19% Similarity=0.344 Sum_probs=38.5
Q ss_pred CCccccccccc-ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccc
Q psy4924 2 KFSHSKVKSNI-ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQ 48 (105)
Q Consensus 2 ~~~~~~~~~~~-~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~ 48 (105)
+|+...+.-++ ++.+..+.+.||+|+|||||+..+|.-.......+.
T Consensus 10 ~y~~~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~ 57 (231)
T COG3840 10 SYGHLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEIL 57 (231)
T ss_pred eeCcceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEE
Confidence 56777766666 889999999999999999999999987766554443
No 444
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.49 E-value=1.1e-06 Score=65.16 Aligned_cols=83 Identities=18% Similarity=0.244 Sum_probs=56.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCc------------------------cccce-----------------------
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRL------------------------QTPQA----------------------- 49 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~~~------------------------~~~~~----------------------- 49 (105)
..++|+||+|+|||++|+++|+.+.+.. ...+.
T Consensus 39 hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~ 118 (563)
T PRK06647 39 NAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASS 118 (563)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcC
Confidence 3589999999999999999999998641 10110
Q ss_pred ----------------------eeec-ccCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHH
Q psy4924 50 ----------------------IFFK-KYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCV 100 (105)
Q Consensus 50 ----------------------~~~~-~~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~ 100 (105)
..++ ..+.+.++.+++.+..+...+.+|+.. +.+..++.+++.+.+.+..
T Consensus 119 ~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~-~~f~~l~~~el~~~L~~i~ 191 (563)
T PRK06647 119 RYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQH-FNFRLLSLEKIYNMLKKVC 191 (563)
T ss_pred CCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceE-EEecCCCHHHHHHHHHHHH
Confidence 0222 224466667766667777778888874 4566677777776666544
No 445
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.49 E-value=1.1e-07 Score=61.81 Aligned_cols=36 Identities=28% Similarity=0.488 Sum_probs=31.3
Q ss_pred ccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 6 SKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 6 ~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
..+.+++ +.+|..+.|.||+|||||||++.++....
T Consensus 20 ~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 20 IPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred ceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 3466666 88899999999999999999999998865
No 446
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.49 E-value=1.3e-07 Score=56.55 Aligned_cols=22 Identities=41% Similarity=0.816 Sum_probs=20.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh
Q psy4924 19 VLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 19 ill~Gp~GsGKT~l~~~la~~~ 40 (105)
|+|.|++||||||+++.|+..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999997
No 447
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.49 E-value=9.6e-08 Score=65.32 Aligned_cols=37 Identities=22% Similarity=0.331 Sum_probs=32.2
Q ss_pred cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 7 KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 7 ~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.+++++ +..|..+.|.||+|||||||+++++......
T Consensus 21 ~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 60 (290)
T PRK13634 21 RALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT 60 (290)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 467777 8899999999999999999999999877543
No 448
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.49 E-value=1.2e-07 Score=64.57 Aligned_cols=38 Identities=13% Similarity=0.258 Sum_probs=32.1
Q ss_pred ccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 8 VKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 8 ~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
+++++ +.+|..+.|.||+|||||||+++++..+.....
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 62 (279)
T PRK13650 22 TLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESG 62 (279)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 66666 889999999999999999999999988754433
No 449
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.49 E-value=1.3e-07 Score=60.03 Aligned_cols=27 Identities=30% Similarity=0.596 Sum_probs=23.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
|+.++|.||+||||||+++.|+.....
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCcc
Confidence 467999999999999999999997643
No 450
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.49 E-value=1.7e-07 Score=60.69 Aligned_cols=28 Identities=32% Similarity=0.625 Sum_probs=25.7
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.++..++|+||+||||||+++.++..++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4688999999999999999999999875
No 451
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.48 E-value=1.5e-07 Score=69.04 Aligned_cols=31 Identities=42% Similarity=0.771 Sum_probs=27.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCccc
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQT 46 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~ 46 (105)
.+.++|+||+||||||+++++|++++..+.+
T Consensus 45 ~~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 5679999999999999999999999986654
No 452
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.48 E-value=1.2e-07 Score=61.91 Aligned_cols=33 Identities=24% Similarity=0.417 Sum_probs=29.0
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
+.+|..+.|.||+|||||||+++++........
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 53 (213)
T TIGR01277 21 VADGEIVAIMGPSGAGKSTLLNLIAGFIEPASG 53 (213)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 778999999999999999999999988765433
No 453
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.48 E-value=1.2e-07 Score=63.16 Aligned_cols=44 Identities=27% Similarity=0.386 Sum_probs=35.0
Q ss_pred Cccc-cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccc
Q psy4924 3 FSHS-KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQT 46 (105)
Q Consensus 3 ~~~~-~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~ 46 (105)
|.+. .+++++ +..+..++|+||+|||||||++.++..+......
T Consensus 13 y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~ 60 (235)
T COG1122 13 YPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGE 60 (235)
T ss_pred cCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCE
Confidence 4443 555555 7889999999999999999999999888765544
No 454
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.48 E-value=9.4e-08 Score=70.52 Aligned_cols=43 Identities=21% Similarity=0.363 Sum_probs=34.8
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++++.......
T Consensus 333 ~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~ 378 (556)
T PRK11819 333 SFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDS 378 (556)
T ss_pred EECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 35555566666 88899999999999999999999998765433
No 455
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.48 E-value=1.3e-06 Score=63.29 Aligned_cols=44 Identities=14% Similarity=0.110 Sum_probs=30.8
Q ss_pred CCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHH
Q psy4924 56 PNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCV 100 (105)
Q Consensus 56 ~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~ 100 (105)
+.+.++.+++....+...+.+|+.. +.+..++.+++...+.+..
T Consensus 150 ~~~~~Il~t~~~~kl~~tI~sRc~~-v~f~~l~~~el~~~L~~~~ 193 (451)
T PRK06305 150 QHVKFFLATTEIHKIPGTILSRCQK-MHLKRIPEETIIDKLALIA 193 (451)
T ss_pred CCceEEEEeCChHhcchHHHHhceE-EeCCCCCHHHHHHHHHHHH
Confidence 4556666777777787878888864 5677777887776666543
No 456
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.48 E-value=2.8e-07 Score=49.28 Aligned_cols=26 Identities=38% Similarity=0.678 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
+...+|+||+||||||++.++...+-
T Consensus 23 g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 35799999999999999999987663
No 457
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.48 E-value=9.4e-08 Score=69.43 Aligned_cols=39 Identities=18% Similarity=0.373 Sum_probs=32.5
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
.|++..+++++ +.+|..+.|.||+|||||||+++++...
T Consensus 269 ~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~ 310 (490)
T PRK10938 269 SYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDH 310 (490)
T ss_pred EECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 45555566666 8889999999999999999999999854
No 458
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.48 E-value=1.2e-07 Score=62.82 Aligned_cols=38 Identities=21% Similarity=0.368 Sum_probs=31.6
Q ss_pred ccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 8 VKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 8 ~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
+.+++ +.+|..+.|.||+|+|||||+++++..+.....
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G 54 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSG 54 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence 45555 788999999999999999999999987665443
No 459
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.47 E-value=8.9e-08 Score=70.57 Aligned_cols=42 Identities=19% Similarity=0.370 Sum_probs=34.0
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.|++..+++++ +..|..+.|.||+|||||||+++++......
T Consensus 331 ~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~ 375 (552)
T TIGR03719 331 GFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD 375 (552)
T ss_pred EECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC
Confidence 35544566666 8889999999999999999999999876543
No 460
>PHA00729 NTP-binding motif containing protein
Probab=98.47 E-value=1.5e-07 Score=62.29 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=22.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.++|+|+||+||||+|.+++..++
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 699999999999999999999875
No 461
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.47 E-value=1.6e-07 Score=69.38 Aligned_cols=41 Identities=24% Similarity=0.350 Sum_probs=35.0
Q ss_pred ccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccc
Q psy4924 6 SKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQT 46 (105)
Q Consensus 6 ~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~ 46 (105)
..+++++ +++|..+.|+||+|||||||++.+++......++
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~ 399 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGE 399 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCce
Confidence 3477777 8899999999999999999999999988765544
No 462
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=1.3e-07 Score=68.06 Aligned_cols=27 Identities=44% Similarity=0.640 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.+.+++++||||||||.+++.+...+.
T Consensus 197 GgHnLl~~GpPGtGKTmla~Rl~~lLP 223 (490)
T COG0606 197 GGHNLLLVGPPGTGKTMLASRLPGLLP 223 (490)
T ss_pred cCCcEEEecCCCCchHHhhhhhcccCC
Confidence 377899999999999999997765554
No 463
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.47 E-value=2.2e-07 Score=60.51 Aligned_cols=33 Identities=18% Similarity=0.426 Sum_probs=26.8
Q ss_pred ccccc-ccCCceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 8 VKSNI-ISWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 8 ~~~~~-~~~~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
+..++ +..++.++|.||||+||||+++.++...
T Consensus 16 v~n~i~l~~g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 16 VANDIDMEKKNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred ecceEEEcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 44444 5667899999999999999999998543
No 464
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.47 E-value=1.8e-07 Score=60.98 Aligned_cols=44 Identities=23% Similarity=0.403 Sum_probs=34.9
Q ss_pred Ccccc--ccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccc
Q psy4924 3 FSHSK--VKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQT 46 (105)
Q Consensus 3 ~~~~~--~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~ 46 (105)
|...+ +.+++ +.++..+.+.||+|||||||++.+|.-....-..
T Consensus 13 y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~ 61 (259)
T COG4525 13 YEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGS 61 (259)
T ss_pred cCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccce
Confidence 44444 55665 8889999999999999999999999877655443
No 465
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.47 E-value=2.5e-07 Score=61.44 Aligned_cols=39 Identities=21% Similarity=0.299 Sum_probs=29.2
Q ss_pred CCCcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 1 MKFSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
++|++..+..++ .+....|.||+|+|||||+++|+..++
T Consensus 10 ksy~~~~~~~~~--~~~~~~i~GpNGsGKStll~ai~~~l~ 48 (243)
T cd03272 10 KSYKDQTVIEPF--SPKHNVVVGRNGSGKSNFFAAIRFVLS 48 (243)
T ss_pred cCcccCcccccC--CCCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 346555554443 367899999999999999999986553
No 466
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.47 E-value=1.5e-07 Score=63.21 Aligned_cols=38 Identities=29% Similarity=0.297 Sum_probs=32.0
Q ss_pred cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 7 KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 7 ~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
.+++++ +.+|..+.|.||+|+|||||+++++.......
T Consensus 35 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~ 75 (257)
T cd03288 35 PVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFD 75 (257)
T ss_pred cceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCC
Confidence 466666 78899999999999999999999998765433
No 467
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.47 E-value=1.2e-07 Score=67.55 Aligned_cols=43 Identities=14% Similarity=0.218 Sum_probs=33.6
Q ss_pred Cccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 3 FSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 3 ~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
|+.....+++ +..|..+.|.||+|||||||+++|+..+.....
T Consensus 38 ~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 38 TGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred cCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 3333345555 788999999999999999999999988765433
No 468
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.47 E-value=1.7e-07 Score=61.79 Aligned_cols=35 Identities=23% Similarity=0.563 Sum_probs=30.6
Q ss_pred cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 7 KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 7 ~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.+.+++ +.++..+.|.||+|||||||++.++..+.
T Consensus 21 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 21 RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred ccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence 456665 78899999999999999999999998875
No 469
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.47 E-value=1.3e-07 Score=65.27 Aligned_cols=37 Identities=22% Similarity=0.340 Sum_probs=31.7
Q ss_pred ccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 8 VKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 8 ~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
+++++ +.+|..+.|.||+|||||||+++|+..+....
T Consensus 22 ~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~ 61 (305)
T PRK13651 22 ALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT 61 (305)
T ss_pred ceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCC
Confidence 66666 88899999999999999999999998775433
No 470
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.47 E-value=1.3e-07 Score=64.48 Aligned_cols=39 Identities=15% Similarity=0.297 Sum_probs=32.9
Q ss_pred cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 7 KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 7 ~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.+++++ +..|..+.|.||+|||||||+++|+........
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G 62 (286)
T PRK13646 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTG 62 (286)
T ss_pred CceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 367777 888999999999999999999999987764433
No 471
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.47 E-value=1.8e-07 Score=58.74 Aligned_cols=31 Identities=42% Similarity=0.856 Sum_probs=28.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCccccc
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQ 48 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~ 48 (105)
.+.|.|++||||||+++.+++.++.++++.+
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~~~ 32 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLISAG 32 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecHH
Confidence 4889999999999999999999999887753
No 472
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.47 E-value=1.6e-07 Score=62.09 Aligned_cols=30 Identities=30% Similarity=0.479 Sum_probs=27.4
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
+.+|..+.|.||+|||||||+++++.....
T Consensus 9 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 38 (230)
T TIGR02770 9 LKRGEVLALVGESGSGKSLTCLAILGLLPP 38 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 678999999999999999999999988764
No 473
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.47 E-value=1.6e-07 Score=64.16 Aligned_cols=33 Identities=24% Similarity=0.395 Sum_probs=27.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHh-CCCccccc
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKL-SIRLQTPQ 48 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~-~~~~~~~~ 48 (105)
...+++.|+|||||||+++.++..+ +..+++.+
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D 35 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRD 35 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEecc
Confidence 3578999999999999999999998 65555443
No 474
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=98.47 E-value=1e-07 Score=59.20 Aligned_cols=29 Identities=28% Similarity=0.538 Sum_probs=25.6
Q ss_pred EEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 21 LHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 21 l~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
|.|||||||||+++.||...+..++....
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~ 29 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGD 29 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHH
Confidence 68999999999999999999988776544
No 475
>KOG3347|consensus
Probab=98.46 E-value=1.6e-07 Score=58.48 Aligned_cols=34 Identities=29% Similarity=0.528 Sum_probs=31.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
...+++.|-||+||||++..+|...+.+++.++.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd 40 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEISD 40 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEehhh
Confidence 4579999999999999999999999999998776
No 476
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.46 E-value=1.4e-07 Score=65.15 Aligned_cols=25 Identities=44% Similarity=0.780 Sum_probs=23.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
.++|+||||+||||+|+++++++..
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcC
Confidence 7999999999999999999998753
No 477
>PRK13409 putative ATPase RIL; Provisional
Probab=98.46 E-value=1.5e-07 Score=70.02 Aligned_cols=47 Identities=21% Similarity=0.239 Sum_probs=37.1
Q ss_pred CCCccc-cccccc--ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcccc
Q psy4924 1 MKFSHS-KVKSNI--ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTP 47 (105)
Q Consensus 1 ~~~~~~-~~~~~~--~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~ 47 (105)
++|+.+ .+++++ +.+|..+.|.||+|+|||||+++|+..+......+
T Consensus 81 ~~yg~~~~~L~~l~~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i 130 (590)
T PRK13409 81 HRYGVNGFKLYGLPIPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDY 130 (590)
T ss_pred EEecCCceeEecCCcCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccc
Confidence 357654 355666 77888999999999999999999999877655554
No 478
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.46 E-value=1.2e-07 Score=64.50 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=31.1
Q ss_pred cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 7 KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 7 ~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
.+.+++ +.+|..+.|.||+|+|||||+++|+..+..
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p 59 (282)
T PRK13640 21 PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLP 59 (282)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCC
Confidence 366666 788999999999999999999999988754
No 479
>PRK04182 cytidylate kinase; Provisional
Probab=98.46 E-value=2.1e-07 Score=58.86 Aligned_cols=30 Identities=33% Similarity=0.804 Sum_probs=27.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCcccc
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTP 47 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~~~~~ 47 (105)
.|+|.|++||||||+++.+|..++.++++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id~ 31 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVSA 31 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEecH
Confidence 589999999999999999999999998874
No 480
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.46 E-value=2.3e-07 Score=58.90 Aligned_cols=29 Identities=31% Similarity=0.519 Sum_probs=26.1
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
...+..+++.|++||||||+++.++..+.
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34678899999999999999999999886
No 481
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.46 E-value=1.8e-07 Score=61.58 Aligned_cols=44 Identities=25% Similarity=0.387 Sum_probs=35.3
Q ss_pred cccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccc
Q psy4924 5 HSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQ 48 (105)
Q Consensus 5 ~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~ 48 (105)
.+.+.+++ +.+|..+.|.||+|+|||||+++++.++........
T Consensus 13 Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~ 59 (259)
T COG4559 13 GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVT 59 (259)
T ss_pred cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEe
Confidence 34455555 778999999999999999999999999986554433
No 482
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.46 E-value=1.5e-07 Score=64.25 Aligned_cols=38 Identities=29% Similarity=0.326 Sum_probs=32.3
Q ss_pred cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 7 KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 7 ~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
.+++++ +..|..+.|.||+|+|||||+++++..+...-
T Consensus 21 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~ 61 (287)
T PRK13637 21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTS 61 (287)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCc
Confidence 366666 88899999999999999999999998775443
No 483
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.46 E-value=8.6e-07 Score=64.81 Aligned_cols=83 Identities=17% Similarity=0.211 Sum_probs=60.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCccccce------------------------------------------------
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA------------------------------------------------ 49 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~------------------------------------------------ 49 (105)
.+++.||.|+||||+||.+|+.++|.-.....
T Consensus 40 AYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~r 119 (515)
T COG2812 40 AYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGR 119 (515)
T ss_pred hhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCcccc
Confidence 48999999999999999999999997531111
Q ss_pred ---------------------eee-cccCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 50 ---------------------IFF-KKYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 50 ---------------------~~~-~~~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
.++ +..+.|.++.+|..++.++.-+++|+... .+...+.+.+...++..+.
T Consensus 120 yKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f-~fkri~~~~I~~~L~~i~~ 192 (515)
T COG2812 120 YKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRF-DFKRLDLEEIAKHLAAILD 192 (515)
T ss_pred ceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccc-cccCCCHHHHHHHHHHHHH
Confidence 133 44456788888888899999999987644 3445556666666665543
No 484
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.46 E-value=1.5e-07 Score=63.99 Aligned_cols=39 Identities=15% Similarity=0.282 Sum_probs=32.9
Q ss_pred cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 7 KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 7 ~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.+++++ +.+|..+.|.||+|||||||+++++..+.....
T Consensus 24 ~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G 65 (280)
T PRK13633 24 LALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEG 65 (280)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 477777 788999999999999999999999988764433
No 485
>PLN03073 ABC transporter F family; Provisional
Probab=98.46 E-value=1.2e-07 Score=71.92 Aligned_cols=39 Identities=23% Similarity=0.356 Sum_probs=33.7
Q ss_pred CCCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 1 MKFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 1 ~~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
+.|++..+++++ +..|..+.|+||+|||||||+++|+..
T Consensus 185 ~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~ 226 (718)
T PLN03073 185 ISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMH 226 (718)
T ss_pred EEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 356666677777 889999999999999999999999975
No 486
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.45 E-value=2e-07 Score=64.35 Aligned_cols=37 Identities=24% Similarity=0.400 Sum_probs=33.6
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
+.++..+.|+|++||||||+++.+|..++.++++.+.
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~ 166 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNR 166 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHH
Confidence 5568899999999999999999999999999987765
No 487
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.45 E-value=1.5e-07 Score=65.23 Aligned_cols=39 Identities=21% Similarity=0.374 Sum_probs=33.1
Q ss_pred cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 7 KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 7 ~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.+++++ +.+|..+.|.||+|||||||+++++..+.....
T Consensus 40 ~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G 81 (320)
T PRK13631 40 VALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYG 81 (320)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 367777 889999999999999999999999988765443
No 488
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.45 E-value=2.5e-07 Score=50.41 Aligned_cols=22 Identities=32% Similarity=0.715 Sum_probs=20.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh
Q psy4924 19 VLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 19 ill~Gp~GsGKT~l~~~la~~~ 40 (105)
+.+.|++||||||+++.++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999997
No 489
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.45 E-value=1.7e-07 Score=55.22 Aligned_cols=26 Identities=38% Similarity=0.778 Sum_probs=22.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 19 VLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 19 ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
|.|+||||+|||++++.|+..+....
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 57999999999999999998886433
No 490
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.45 E-value=1.2e-07 Score=65.90 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=30.9
Q ss_pred cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 7 KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 7 ~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.+.+++ +..|..+.|.|+||||||||+++|+....
T Consensus 21 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~ 58 (330)
T PRK15093 21 KAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTK 58 (330)
T ss_pred EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 466666 88899999999999999999999998775
No 491
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.45 E-value=1.5e-07 Score=64.36 Aligned_cols=38 Identities=21% Similarity=0.234 Sum_probs=32.6
Q ss_pred ccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 8 VKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 8 ~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
+++++ +..|..+.|.||+|||||||+++++..+.....
T Consensus 21 ~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G 61 (288)
T PRK13643 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61 (288)
T ss_pred ceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCc
Confidence 66666 889999999999999999999999987765443
No 492
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.45 E-value=1.4e-07 Score=60.65 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=28.8
Q ss_pred ccccccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 9 KSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 9 ~~~~~~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
+...+..+..+++.||+||||||++++++..+..
T Consensus 18 l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~ 51 (186)
T cd01130 18 LWLAVEARKNILISGGTGSGKTTLLNALLAFIPP 51 (186)
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 3334677899999999999999999999988763
No 493
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.44 E-value=1.6e-07 Score=61.62 Aligned_cols=36 Identities=36% Similarity=0.569 Sum_probs=30.6
Q ss_pred cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 7 KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 7 ~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
.+.+++ +..|..+.|.||+|+|||||+++|+..+..
T Consensus 19 ~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~ 57 (220)
T TIGR02982 19 QVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSV 57 (220)
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 356666 788999999999999999999999987643
No 494
>PLN03211 ABC transporter G-25; Provisional
Probab=98.44 E-value=1.7e-07 Score=70.56 Aligned_cols=40 Identities=23% Similarity=0.495 Sum_probs=34.8
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.|++..+++++ +.+|..+.|.||||+|||||+++|+....
T Consensus 77 ~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~ 119 (659)
T PLN03211 77 QIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQ 119 (659)
T ss_pred cCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46666678877 88999999999999999999999998764
No 495
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=6.2e-07 Score=59.42 Aligned_cols=71 Identities=15% Similarity=0.238 Sum_probs=44.7
Q ss_pred cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccceeeecccCCEEEEEeeCCCCCCCHHhhcccceEEE
Q psy4924 7 KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAFLDRADIKQY 83 (105)
Q Consensus 7 ~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~d~~~~~r~~~~~~ 83 (105)
.+++.+ +..|..-.|.||+|||||||+.+|+...+... .. ..+ +.......++++.-.-|..+.+-
T Consensus 18 eILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~V---t~------G~I--~~~GedI~~l~~~ERAr~GifLa 86 (251)
T COG0396 18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEV---TE------GEI--LFDGEDILELSPDERARAGIFLA 86 (251)
T ss_pred hhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceE---ec------ceE--EECCcccccCCHhHHHhcCCEEe
Confidence 566655 78899999999999999999999997654322 11 112 22222223444433445566666
Q ss_pred eCCCC
Q psy4924 84 IGFPS 88 (105)
Q Consensus 84 ~~~~~ 88 (105)
+.+|.
T Consensus 87 fQ~P~ 91 (251)
T COG0396 87 FQYPV 91 (251)
T ss_pred ecCCc
Confidence 66664
No 496
>PLN02165 adenylate isopentenyltransferase
Probab=98.44 E-value=2.8e-07 Score=64.13 Aligned_cols=35 Identities=23% Similarity=0.477 Sum_probs=30.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
.+..++|+||+|||||+|+..||..++..+++.+.
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs 76 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDK 76 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHcCCceecCCh
Confidence 46689999999999999999999999877666554
No 497
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.43 E-value=2.1e-07 Score=70.41 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=36.5
Q ss_pred CCccc--cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccc
Q psy4924 2 KFSHS--KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQT 46 (105)
Q Consensus 2 ~~~~~--~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~ 46 (105)
.|+.. .+.+++ +++|..+.|+|++|||||||+|.+.+......++
T Consensus 480 ~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~ 529 (709)
T COG2274 480 RYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGR 529 (709)
T ss_pred EeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 45444 467777 8999999999999999999999999888765444
No 498
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.43 E-value=2.2e-07 Score=62.21 Aligned_cols=34 Identities=35% Similarity=0.409 Sum_probs=28.5
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccc
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQT 46 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~ 46 (105)
+..|..+.|.||+|||||||+++|+.........
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~ 55 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGD 55 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCe
Confidence 4578899999999999999999999887654443
No 499
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.43 E-value=2.1e-07 Score=63.29 Aligned_cols=36 Identities=39% Similarity=0.435 Sum_probs=31.9
Q ss_pred ccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 6 SKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 6 ~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
..+++++ +.+|..+.|+||+|+|||||+++|++.+.
T Consensus 17 ~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~ 55 (275)
T cd03289 17 NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN 55 (275)
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC
Confidence 3466776 88999999999999999999999999885
No 500
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.43 E-value=2.1e-07 Score=65.49 Aligned_cols=35 Identities=40% Similarity=0.718 Sum_probs=27.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhC--CCccccce
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLS--IRLQTPQA 49 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~--~~~~~~~~ 49 (105)
.|+.++|.||||||||.||.++|++++ .||..++.
T Consensus 49 aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isg 85 (398)
T PF06068_consen 49 AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISG 85 (398)
T ss_dssp TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEG
T ss_pred cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEccc
Confidence 378999999999999999999999999 45555443
Done!