Query psy4924
Match_columns 105
No_of_seqs 157 out of 1083
Neff 9.4
Searched_HMMs 29240
Date Fri Aug 16 21:20:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4924.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4924hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 99.9 1.1E-22 3.7E-27 142.5 9.7 90 13-102 179-334 (405)
2 4b4t_M 26S protease regulatory 99.9 1E-22 3.5E-27 143.9 9.0 91 13-103 212-368 (434)
3 4b4t_H 26S protease regulatory 99.9 3.3E-22 1.1E-26 141.8 9.1 90 13-102 240-395 (467)
4 4b4t_I 26S protease regulatory 99.9 2.4E-22 8.3E-27 141.5 8.3 90 13-102 213-368 (437)
5 4b4t_L 26S protease subunit RP 99.9 3.8E-22 1.3E-26 141.1 8.4 91 13-103 212-368 (437)
6 4b4t_K 26S protease regulatory 99.9 1.6E-21 5.4E-26 137.7 10.1 90 13-102 203-359 (428)
7 3cf2_A TER ATPase, transitiona 99.8 7.5E-19 2.6E-23 131.6 6.9 89 13-101 235-386 (806)
8 3cf2_A TER ATPase, transitiona 99.8 2.6E-19 8.9E-24 134.0 3.6 89 13-101 508-662 (806)
9 1xwi_A SKD1 protein; VPS4B, AA 99.7 4E-17 1.4E-21 111.5 10.6 90 13-102 42-194 (322)
10 3eie_A Vacuolar protein sortin 99.7 2.8E-17 9.6E-22 112.0 9.0 89 14-102 49-199 (322)
11 2x8a_A Nuclear valosin-contain 99.7 1.9E-17 6.6E-22 111.0 7.7 89 13-101 41-192 (274)
12 3cf0_A Transitional endoplasmi 99.7 4.7E-17 1.6E-21 110.1 9.0 90 13-102 46-201 (301)
13 2qp9_X Vacuolar protein sortin 99.7 1.5E-16 5E-21 110.0 8.9 89 14-102 82-232 (355)
14 2qz4_A Paraplegin; AAA+, SPG7, 99.7 2.4E-16 8.1E-21 103.8 9.1 89 14-102 37-192 (262)
15 3h4m_A Proteasome-activating n 99.7 2.5E-16 8.5E-21 105.1 8.7 89 14-102 49-203 (285)
16 1lv7_A FTSH; alpha/beta domain 99.7 5.7E-16 1.9E-20 102.3 10.3 88 15-102 44-197 (257)
17 2zan_A Vacuolar protein sortin 99.7 3.6E-16 1.2E-20 110.8 9.1 88 14-101 165-315 (444)
18 3b9p_A CG5977-PA, isoform A; A 99.6 8.7E-16 3E-20 103.1 9.5 88 15-102 53-204 (297)
19 3vfd_A Spastin; ATPase, microt 99.6 8.3E-16 2.9E-20 107.1 9.6 88 14-101 146-296 (389)
20 3t15_A Ribulose bisphosphate c 99.6 4.7E-16 1.6E-20 105.0 7.9 87 13-101 33-199 (293)
21 3d8b_A Fidgetin-like protein 1 99.6 1.8E-15 6.1E-20 104.5 10.3 88 14-101 115-265 (357)
22 2ce7_A Cell division protein F 99.6 1.1E-15 3.8E-20 109.2 9.0 89 14-102 47-201 (476)
23 1ixz_A ATP-dependent metallopr 99.6 2.7E-15 9.2E-20 98.9 7.8 88 14-101 47-200 (254)
24 3hu3_A Transitional endoplasmi 99.6 3.1E-15 1.1E-19 107.3 8.1 90 13-102 235-387 (489)
25 2r62_A Cell division protease 99.6 1.2E-15 4.3E-20 101.0 4.4 89 14-102 42-198 (268)
26 1iy2_A ATP-dependent metallopr 99.6 1.2E-14 4E-19 97.1 8.9 87 15-101 72-224 (278)
27 2dhr_A FTSH; AAA+ protein, hex 99.5 7.8E-15 2.7E-19 105.4 6.8 88 14-101 62-215 (499)
28 1ypw_A Transitional endoplasmi 99.5 2.6E-16 8.7E-21 118.3 -1.7 89 13-101 508-662 (806)
29 3pfi_A Holliday junction ATP-d 99.5 1.7E-13 5.9E-18 93.3 9.8 87 16-102 55-199 (338)
30 2r44_A Uncharacterized protein 99.5 1.6E-13 5.6E-18 93.4 9.6 87 15-101 45-199 (331)
31 3m6a_A ATP-dependent protease 99.5 2.4E-13 8.3E-18 98.5 9.2 85 15-100 107-266 (543)
32 1ypw_A Transitional endoplasmi 99.5 1.3E-13 4.6E-18 103.6 7.4 89 13-101 235-386 (806)
33 1hqc_A RUVB; extended AAA-ATPa 99.4 4.2E-12 1.4E-16 85.8 8.7 87 15-101 37-182 (324)
34 3syl_A Protein CBBX; photosynt 99.3 1.2E-12 4.1E-17 88.0 5.6 88 15-102 66-219 (309)
35 1ofh_A ATP-dependent HSL prote 99.3 5.3E-12 1.8E-16 84.6 8.6 84 15-98 49-213 (310)
36 3pxg_A Negative regulator of g 99.3 6E-12 2E-16 89.7 9.0 86 15-101 200-339 (468)
37 3pvs_A Replication-associated 99.3 3.7E-12 1.3E-16 90.5 7.6 84 17-102 51-180 (447)
38 1g41_A Heat shock protein HSLU 99.3 7.2E-13 2.5E-17 94.0 3.9 80 15-96 49-188 (444)
39 1in4_A RUVB, holliday junction 99.3 1E-11 3.4E-16 85.0 9.0 85 17-101 52-194 (334)
40 4fcw_A Chaperone protein CLPB; 99.3 4.4E-12 1.5E-16 85.2 7.1 47 57-103 160-232 (311)
41 3pxi_A Negative regulator of g 99.3 1.2E-11 4.2E-16 92.3 9.0 87 14-101 199-339 (758)
42 1d2n_A N-ethylmaleimide-sensit 99.3 2E-12 6.7E-17 85.9 4.1 84 15-98 63-210 (272)
43 1jbk_A CLPB protein; beta barr 99.3 2.6E-12 8.8E-17 80.0 3.9 81 15-96 42-194 (195)
44 1l8q_A Chromosomal replication 99.3 1.9E-11 6.7E-16 82.9 8.2 85 16-101 37-180 (324)
45 1g8p_A Magnesium-chelatase 38 99.2 3.4E-11 1.2E-15 82.0 8.7 42 57-98 187-230 (350)
46 2chg_A Replication factor C sm 99.2 5.7E-11 1.9E-15 75.4 8.9 84 17-101 39-175 (226)
47 1r6b_X CLPA protein; AAA+, N-t 99.2 8E-11 2.7E-15 87.8 11.0 86 18-103 490-669 (758)
48 3uk6_A RUVB-like 2; hexameric 99.2 5.4E-11 1.9E-15 81.6 8.8 36 66-102 239-274 (368)
49 3pxi_A Negative regulator of g 99.2 1.2E-10 4.3E-15 86.9 11.0 86 18-103 523-678 (758)
50 3u61_B DNA polymerase accessor 99.2 2.1E-11 7E-16 82.7 6.0 85 16-101 48-179 (324)
51 3f9v_A Minichromosome maintena 99.2 1.5E-11 5E-16 90.0 5.4 82 18-100 329-490 (595)
52 2c9o_A RUVB-like 1; hexameric 99.2 2.8E-12 9.5E-17 91.1 1.1 32 15-46 62-95 (456)
53 3hws_A ATP-dependent CLP prote 99.2 1.6E-10 5.4E-15 79.7 9.3 34 15-48 50-83 (363)
54 3bos_A Putative DNA replicatio 99.2 9.2E-11 3.2E-15 75.6 7.0 87 15-101 51-188 (242)
55 2z4s_A Chromosomal replication 99.1 7.2E-11 2.5E-15 83.6 6.4 86 16-101 130-277 (440)
56 1njg_A DNA polymerase III subu 99.1 9.8E-10 3.4E-14 70.3 9.7 45 56-101 155-199 (250)
57 3nbx_X ATPase RAVA; AAA+ ATPas 99.1 1.4E-10 5E-15 83.4 6.3 29 13-41 38-66 (500)
58 4akg_A Glutathione S-transfera 99.1 2.1E-10 7.3E-15 94.3 6.9 46 57-103 1384-1434(2695)
59 2v1u_A Cell division control p 99.1 4.7E-10 1.6E-14 76.8 7.3 48 55-102 165-216 (387)
60 2p65_A Hypothetical protein PF 99.1 6.8E-11 2.3E-15 73.5 2.8 26 15-40 42-67 (187)
61 1um8_A ATP-dependent CLP prote 99.0 5.4E-10 1.8E-14 77.3 7.1 33 15-47 71-103 (376)
62 2chq_A Replication factor C sm 99.0 8.2E-10 2.8E-14 74.0 7.9 83 18-101 40-175 (319)
63 1sxj_C Activator 1 40 kDa subu 99.0 4.9E-10 1.7E-14 76.6 6.8 87 13-100 41-182 (340)
64 1r6b_X CLPA protein; AAA+, N-t 99.0 6E-10 2.1E-14 83.1 7.4 87 15-102 206-364 (758)
65 1sxj_D Activator 1 41 kDa subu 99.0 6.2E-10 2.1E-14 75.7 6.9 43 57-100 163-205 (353)
66 3te6_A Regulatory protein SIR3 99.0 8.9E-10 3.1E-14 75.3 7.6 49 55-103 161-214 (318)
67 1qvr_A CLPB protein; coiled co 99.0 2.6E-10 9E-15 86.2 5.2 85 16-101 191-346 (854)
68 1sxj_A Activator 1 95 kDa subu 99.0 1.9E-09 6.4E-14 77.6 8.2 32 15-46 76-107 (516)
69 1iqp_A RFCS; clamp loader, ext 99.0 2.2E-09 7.4E-14 72.2 7.8 83 18-101 48-183 (327)
70 2qby_B CDC6 homolog 3, cell di 99.0 5.4E-09 1.8E-13 71.8 9.8 46 56-101 163-211 (384)
71 1jr3_A DNA polymerase III subu 99.0 5.7E-09 1.9E-13 71.4 9.7 45 56-101 148-192 (373)
72 3vaa_A Shikimate kinase, SK; s 98.9 5.6E-10 1.9E-14 71.1 3.9 37 13-49 22-58 (199)
73 1qvr_A CLPB protein; coiled co 98.9 2.4E-09 8.3E-14 81.0 6.8 48 56-103 700-773 (854)
74 2qby_A CDC6 homolog 1, cell di 98.9 5.9E-09 2E-13 71.3 7.9 47 55-101 161-211 (386)
75 2pcj_A ABC transporter, lipopr 98.9 4.4E-10 1.5E-14 73.2 1.6 42 2-43 13-57 (224)
76 1sxj_B Activator 1 37 kDa subu 98.9 9.1E-09 3.1E-13 69.0 8.0 83 18-101 44-180 (323)
77 2bjv_A PSP operon transcriptio 98.9 1E-08 3.4E-13 67.7 7.9 28 14-41 27-54 (265)
78 1b0u_A Histidine permease; ABC 98.9 6.3E-10 2.2E-14 74.1 2.0 43 2-44 15-60 (262)
79 1fnn_A CDC6P, cell division co 98.9 1.1E-08 3.8E-13 70.2 8.3 47 56-102 158-208 (389)
80 3nwj_A ATSK2; P loop, shikimat 98.9 6.2E-10 2.1E-14 73.7 1.9 48 2-49 27-81 (250)
81 3trf_A Shikimate kinase, SK; a 98.9 1.7E-09 5.8E-14 67.7 3.7 34 16-49 5-38 (185)
82 1mv5_A LMRA, multidrug resista 98.9 1.3E-09 4.6E-14 71.7 3.3 45 2-46 10-58 (243)
83 1g6h_A High-affinity branched- 98.9 6.1E-10 2.1E-14 73.9 1.7 44 2-45 16-62 (257)
84 2olj_A Amino acid ABC transpor 98.8 7.8E-10 2.7E-14 73.7 2.0 42 2-43 33-77 (263)
85 4g1u_C Hemin import ATP-bindin 98.8 7.9E-10 2.7E-14 73.8 2.0 44 2-45 20-66 (266)
86 3ec2_A DNA replication protein 98.8 1.8E-09 6.2E-14 67.5 3.4 29 13-41 35-63 (180)
87 1ji0_A ABC transporter; ATP bi 98.8 7.6E-10 2.6E-14 72.8 1.7 45 2-46 15-62 (240)
88 2kjq_A DNAA-related protein; s 98.8 4.5E-08 1.6E-12 59.9 9.5 27 15-41 35-61 (149)
89 1sxj_E Activator 1 40 kDa subu 98.8 3E-08 1E-12 67.6 9.6 45 56-101 163-207 (354)
90 3fvq_A Fe(3+) IONS import ATP- 98.8 1.1E-09 3.6E-14 76.0 2.3 46 1-46 12-60 (359)
91 1vpl_A ABC transporter, ATP-bi 98.8 1E-09 3.4E-14 72.9 2.0 43 2-44 24-69 (256)
92 2ihy_A ABC transporter, ATP-bi 98.8 9.1E-10 3.1E-14 73.9 1.8 44 2-45 30-76 (279)
93 1qhx_A CPT, protein (chloramph 98.8 3E-09 1E-13 66.1 4.0 31 16-46 3-33 (178)
94 1kag_A SKI, shikimate kinase I 98.8 2.1E-09 7.3E-14 66.5 3.2 33 16-48 4-36 (173)
95 1sgw_A Putative ABC transporte 98.8 1.1E-09 3.6E-14 71.1 1.9 43 2-45 19-64 (214)
96 1z47_A CYSA, putative ABC-tran 98.8 2.2E-09 7.5E-14 74.4 3.1 44 1-44 22-69 (355)
97 3c8u_A Fructokinase; YP_612366 98.8 5.2E-08 1.8E-12 62.3 9.3 28 14-41 20-47 (208)
98 3rlf_A Maltose/maltodextrin im 98.8 1.8E-09 6E-14 75.4 2.5 46 1-46 11-59 (381)
99 2zu0_C Probable ATP-dependent 98.8 2.1E-09 7.2E-14 71.7 2.7 39 2-40 29-70 (267)
100 2ixe_A Antigen peptide transpo 98.8 2.2E-09 7.6E-14 71.8 2.8 44 2-45 25-74 (271)
101 2it1_A 362AA long hypothetical 98.8 2.3E-09 8E-14 74.4 3.0 44 1-44 11-57 (362)
102 2d2e_A SUFC protein; ABC-ATPas 98.8 2E-09 6.9E-14 71.1 2.5 38 2-39 12-52 (250)
103 2ff7_A Alpha-hemolysin translo 98.8 1.7E-09 5.9E-14 71.4 2.1 41 5-45 21-64 (247)
104 1ojl_A Transcriptional regulat 98.8 4.4E-08 1.5E-12 66.3 9.1 27 14-40 23-49 (304)
105 2pze_A Cystic fibrosis transme 98.8 2.3E-09 7.7E-14 70.0 2.6 44 2-45 15-63 (229)
106 2nq2_C Hypothetical ABC transp 98.8 1.6E-09 5.5E-14 71.8 1.8 46 2-47 13-62 (253)
107 3gfo_A Cobalt import ATP-bindi 98.8 2E-09 6.8E-14 72.2 2.2 43 2-44 16-62 (275)
108 2yyz_A Sugar ABC transporter, 98.8 2.2E-09 7.5E-14 74.4 2.5 44 2-45 12-58 (359)
109 1zp6_A Hypothetical protein AT 98.8 3.4E-09 1.2E-13 66.5 3.1 31 13-43 6-36 (191)
110 1a5t_A Delta prime, HOLB; zinc 98.8 6.5E-08 2.2E-12 66.1 9.7 82 17-99 25-179 (334)
111 1htw_A HI0065; nucleotide-bind 98.8 1.8E-09 6.3E-14 66.9 1.8 28 13-40 30-57 (158)
112 2rhm_A Putative kinase; P-loop 98.8 4.7E-09 1.6E-13 65.9 3.7 35 15-49 4-38 (193)
113 1via_A Shikimate kinase; struc 98.8 3.8E-09 1.3E-13 65.8 3.2 33 17-49 5-37 (175)
114 2cbz_A Multidrug resistance-as 98.8 2.9E-09 1E-13 69.9 2.7 41 2-42 12-57 (237)
115 1knq_A Gluconate kinase; ALFA/ 98.8 6.4E-09 2.2E-13 64.6 4.1 34 15-48 7-40 (175)
116 3kb2_A SPBC2 prophage-derived 98.8 6E-09 2E-13 64.2 3.9 33 17-49 2-34 (173)
117 1v43_A Sugar-binding transport 98.8 2.7E-09 9.3E-14 74.3 2.5 44 2-45 20-66 (372)
118 1g29_1 MALK, maltose transport 98.8 2.5E-09 8.6E-14 74.4 2.3 45 2-46 12-59 (372)
119 4eun_A Thermoresistant glucoki 98.8 6.8E-09 2.3E-13 66.0 4.1 34 14-47 27-60 (200)
120 2iyv_A Shikimate kinase, SK; t 98.8 5.1E-09 1.8E-13 65.5 3.4 33 17-49 3-35 (184)
121 3iij_A Coilin-interacting nucl 98.7 5.7E-09 2E-13 65.1 3.5 35 15-49 10-44 (180)
122 3n70_A Transport activator; si 98.7 7.1E-09 2.4E-13 63.0 3.7 27 14-40 22-48 (145)
123 3cm0_A Adenylate kinase; ATP-b 98.7 6.2E-09 2.1E-13 65.1 3.4 34 15-48 3-36 (186)
124 3tif_A Uncharacterized ABC tra 98.7 2.6E-09 8.8E-14 70.1 1.7 39 7-45 19-60 (235)
125 3b85_A Phosphate starvation-in 98.7 2E-09 6.9E-14 69.5 1.1 44 1-46 8-51 (208)
126 1y63_A LMAJ004144AAA protein; 98.7 6E-09 2.1E-13 65.5 3.2 35 15-49 9-44 (184)
127 3t61_A Gluconokinase; PSI-biol 98.7 9.7E-09 3.3E-13 65.2 4.2 34 16-49 18-51 (202)
128 3d31_A Sulfate/molybdate ABC t 98.7 2.6E-09 8.9E-14 73.8 1.6 42 2-44 10-54 (348)
129 2yz2_A Putative ABC transporte 98.7 3.8E-09 1.3E-13 70.4 2.0 39 7-45 21-62 (266)
130 3umf_A Adenylate kinase; rossm 98.7 1.2E-08 4E-13 66.3 4.2 36 13-48 26-61 (217)
131 2ze6_A Isopentenyl transferase 98.7 1.1E-08 3.6E-13 67.7 4.0 32 17-48 2-33 (253)
132 2c95_A Adenylate kinase 1; tra 98.7 8.1E-09 2.8E-13 64.9 3.2 35 14-48 7-41 (196)
133 1tev_A UMP-CMP kinase; ploop, 98.7 1E-08 3.4E-13 64.3 3.4 32 16-47 3-34 (196)
134 1zuh_A Shikimate kinase; alpha 98.7 1.1E-08 3.9E-13 63.1 3.6 34 16-49 7-40 (168)
135 1oxx_K GLCV, glucose, ABC tran 98.7 2.5E-09 8.5E-14 74.0 0.6 45 2-46 12-61 (353)
136 2ghi_A Transport protein; mult 98.7 8.1E-09 2.8E-13 68.6 3.0 35 7-41 34-71 (260)
137 2bbw_A Adenylate kinase 4, AK4 98.7 1.6E-08 5.5E-13 66.2 4.3 32 15-46 26-57 (246)
138 2jeo_A Uridine-cytidine kinase 98.7 1.6E-08 5.6E-13 66.2 4.2 40 4-43 10-52 (245)
139 2cdn_A Adenylate kinase; phosp 98.7 1.6E-08 5.4E-13 64.2 4.0 32 16-47 20-51 (201)
140 4e22_A Cytidylate kinase; P-lo 98.7 1.8E-08 6.2E-13 66.4 4.1 37 11-47 22-58 (252)
141 1kht_A Adenylate kinase; phosp 98.7 1.2E-08 4.1E-13 63.8 3.1 31 16-46 3-38 (192)
142 1tue_A Replication protein E1; 98.7 1.5E-08 5.1E-13 65.5 3.5 30 13-42 55-84 (212)
143 1e6c_A Shikimate kinase; phosp 98.7 1.3E-08 4.6E-13 62.8 3.2 32 17-48 3-34 (173)
144 2w58_A DNAI, primosome compone 98.7 1.8E-08 6.1E-13 63.9 3.8 26 17-42 55-80 (202)
145 3co5_A Putative two-component 98.7 3.8E-09 1.3E-13 64.1 0.6 34 14-48 25-58 (143)
146 1zak_A Adenylate kinase; ATP:A 98.7 1.6E-08 5.3E-13 65.2 3.5 33 15-47 4-36 (222)
147 3gd7_A Fusion complex of cysti 98.7 1.1E-08 3.7E-13 71.7 3.0 40 2-41 28-72 (390)
148 2pjz_A Hypothetical protein ST 98.7 5.9E-09 2E-13 69.5 1.5 37 6-44 18-57 (263)
149 2gno_A DNA polymerase III, gam 98.7 7.3E-08 2.5E-12 65.4 6.9 81 16-99 18-151 (305)
150 2bwj_A Adenylate kinase 5; pho 98.6 1.5E-08 5.1E-13 63.8 3.3 33 15-47 11-43 (199)
151 1aky_A Adenylate kinase; ATP:A 98.6 1.7E-08 5.9E-13 64.9 3.6 32 16-47 4-35 (220)
152 1ly1_A Polynucleotide kinase; 98.6 1.2E-08 4E-13 63.3 2.6 30 16-45 2-32 (181)
153 1znw_A Guanylate kinase, GMP k 98.6 2.2E-08 7.5E-13 64.0 3.8 29 13-41 17-45 (207)
154 3nh6_A ATP-binding cassette SU 98.6 5.4E-09 1.9E-13 71.1 1.0 44 2-45 62-109 (306)
155 1cke_A CK, MSSA, protein (cyti 98.6 2.3E-08 7.7E-13 64.3 3.7 34 16-49 5-38 (227)
156 1zd8_A GTP:AMP phosphotransfer 98.6 1.7E-08 5.7E-13 65.3 3.1 33 15-47 6-38 (227)
157 3tr0_A Guanylate kinase, GMP k 98.6 2.9E-08 1E-12 62.8 4.2 28 14-41 5-32 (205)
158 3lw7_A Adenylate kinase relate 98.6 2E-08 6.8E-13 61.6 3.2 30 17-47 2-31 (179)
159 3fb4_A Adenylate kinase; psych 98.6 2.4E-08 8.1E-13 63.9 3.5 31 18-48 2-32 (216)
160 2pt5_A Shikimate kinase, SK; a 98.6 2.7E-08 9.2E-13 61.2 3.6 32 18-49 2-33 (168)
161 3dl0_A Adenylate kinase; phosp 98.6 2.4E-08 8.1E-13 64.0 3.4 31 18-48 2-32 (216)
162 3uie_A Adenylyl-sulfate kinase 98.6 3.2E-08 1.1E-12 62.9 4.0 29 13-41 22-50 (200)
163 2v9p_A Replication protein E1; 98.6 8.7E-09 3E-13 70.1 1.4 33 8-40 115-150 (305)
164 1ukz_A Uridylate kinase; trans 98.6 2.6E-08 8.7E-13 63.2 3.5 33 16-48 15-47 (203)
165 1qf9_A UMP/CMP kinase, protein 98.6 2.3E-08 7.7E-13 62.5 3.1 33 16-48 6-38 (194)
166 2onk_A Molybdate/tungstate ABC 98.6 1.5E-08 5.3E-13 66.6 2.5 36 9-45 15-53 (240)
167 3zvl_A Bifunctional polynucleo 98.6 3.6E-08 1.2E-12 69.4 4.4 85 15-100 257-359 (416)
168 1lvg_A Guanylate kinase, GMP k 98.6 2.8E-08 9.7E-13 63.3 3.5 28 14-41 2-29 (198)
169 1kgd_A CASK, peripheral plasma 98.6 3.6E-08 1.2E-12 61.8 3.9 27 15-41 4-30 (180)
170 3tlx_A Adenylate kinase 2; str 98.6 3.2E-08 1.1E-12 64.9 3.7 34 15-48 28-61 (243)
171 2vli_A Antibiotic resistance p 98.6 2.6E-08 9E-13 62.0 3.0 30 16-45 5-34 (183)
172 2qgz_A Helicase loader, putati 98.6 3.8E-08 1.3E-12 66.8 4.0 26 16-41 152-177 (308)
173 2j41_A Guanylate kinase; GMP, 98.6 3.6E-08 1.2E-12 62.4 3.6 27 14-40 4-30 (207)
174 1s96_A Guanylate kinase, GMP k 98.6 4.5E-08 1.5E-12 63.6 4.0 29 13-41 13-41 (219)
175 1z6g_A Guanylate kinase; struc 98.6 3.6E-08 1.2E-12 63.7 3.6 28 13-40 20-47 (218)
176 3be4_A Adenylate kinase; malar 98.6 3.2E-08 1.1E-12 63.7 3.3 32 16-47 5-36 (217)
177 1ak2_A Adenylate kinase isoenz 98.6 3.9E-08 1.3E-12 63.9 3.7 34 15-48 15-48 (233)
178 3sr0_A Adenylate kinase; phosp 98.6 3.4E-08 1.2E-12 63.6 3.4 31 18-48 2-32 (206)
179 2qor_A Guanylate kinase; phosp 98.6 4.6E-08 1.6E-12 62.3 3.9 29 13-41 9-37 (204)
180 3tau_A Guanylate kinase, GMP k 98.6 4.9E-08 1.7E-12 62.5 3.8 29 14-42 6-34 (208)
181 2pez_A Bifunctional 3'-phospho 98.6 6.1E-08 2.1E-12 60.4 4.1 33 15-47 4-39 (179)
182 3asz_A Uridine kinase; cytidin 98.6 3.6E-08 1.2E-12 62.9 3.1 28 14-41 4-31 (211)
183 1ye8_A Protein THEP1, hypothet 98.6 5.2E-08 1.8E-12 61.3 3.7 25 18-42 2-26 (178)
184 1gvn_B Zeta; postsegregational 98.5 5.5E-08 1.9E-12 65.4 3.9 26 15-40 32-57 (287)
185 2wwf_A Thymidilate kinase, put 98.5 5.3E-08 1.8E-12 61.9 3.6 33 15-47 9-41 (212)
186 3a00_A Guanylate kinase, GMP k 98.5 4.9E-08 1.7E-12 61.4 3.4 26 16-41 1-26 (186)
187 3tui_C Methionine import ATP-b 98.5 2.7E-08 9.3E-13 69.1 2.3 38 7-44 42-82 (366)
188 2if2_A Dephospho-COA kinase; a 98.5 4.3E-08 1.5E-12 62.2 2.9 30 18-48 3-32 (204)
189 4gp7_A Metallophosphoesterase; 98.5 5E-08 1.7E-12 60.8 3.1 23 13-35 6-28 (171)
190 2qi9_C Vitamin B12 import ATP- 98.5 3E-08 1E-12 65.6 2.2 31 13-43 23-53 (249)
191 2ehv_A Hypothetical protein PH 98.5 5.5E-08 1.9E-12 63.1 3.4 26 13-38 27-52 (251)
192 2qt1_A Nicotinamide riboside k 98.5 3.9E-08 1.3E-12 62.6 2.6 35 13-47 18-53 (207)
193 1e4v_A Adenylate kinase; trans 98.5 5.7E-08 1.9E-12 62.3 3.3 30 18-47 2-31 (214)
194 4a74_A DNA repair and recombin 98.5 7.2E-08 2.5E-12 61.8 3.8 30 13-42 22-51 (231)
195 1jjv_A Dephospho-COA kinase; P 98.5 5.2E-08 1.8E-12 61.9 3.1 31 17-48 3-33 (206)
196 3b5x_A Lipid A export ATP-bind 98.5 5.7E-08 1.9E-12 70.9 3.6 45 2-46 350-399 (582)
197 2p5t_B PEZT; postsegregational 98.5 5.8E-08 2E-12 63.9 3.3 29 14-42 30-58 (253)
198 2bbs_A Cystic fibrosis transme 98.5 2.8E-08 9.5E-13 67.1 1.8 36 7-42 52-90 (290)
199 1nn5_A Similar to deoxythymidy 98.5 6.2E-08 2.1E-12 61.7 3.3 32 15-46 8-39 (215)
200 3vkg_A Dynein heavy chain, cyt 98.5 2.3E-07 7.8E-12 77.7 7.2 47 56-103 1421-1472(3245)
201 2plr_A DTMP kinase, probable t 98.5 1.1E-07 3.8E-12 60.3 4.3 28 16-43 4-31 (213)
202 1uf9_A TT1252 protein; P-loop, 98.5 7.4E-08 2.5E-12 60.8 3.4 33 15-48 7-39 (203)
203 2bdt_A BH3686; alpha-beta prot 98.5 8E-08 2.7E-12 60.3 3.4 26 16-41 2-27 (189)
204 2v54_A DTMP kinase, thymidylat 98.5 8E-08 2.7E-12 60.7 3.3 30 15-44 3-33 (204)
205 2jaq_A Deoxyguanosine kinase; 98.5 1.1E-07 3.7E-12 60.0 3.9 28 18-45 2-29 (205)
206 1yqt_A RNAse L inhibitor; ATP- 98.5 8.8E-08 3E-12 69.4 3.8 44 2-45 30-76 (538)
207 4akg_A Glutathione S-transfera 98.5 7E-07 2.4E-11 74.1 9.4 82 14-96 643-789 (2695)
208 2eyu_A Twitching motility prot 98.5 1.2E-07 4E-12 63.1 4.2 30 13-42 22-51 (261)
209 3ake_A Cytidylate kinase; CMP 98.5 9.4E-08 3.2E-12 60.5 3.5 32 18-49 4-35 (208)
210 3tqc_A Pantothenate kinase; bi 98.5 1.3E-06 4.3E-11 59.8 9.3 25 17-41 93-117 (321)
211 3b60_A Lipid A export ATP-bind 98.5 6.1E-08 2.1E-12 70.7 2.9 44 2-45 350-398 (582)
212 2xb4_A Adenylate kinase; ATP-b 98.5 9.4E-08 3.2E-12 61.8 3.4 30 18-47 2-31 (223)
213 1nks_A Adenylate kinase; therm 98.5 9.5E-08 3.2E-12 59.7 3.2 25 17-41 2-26 (194)
214 3crm_A TRNA delta(2)-isopenten 98.5 8.6E-08 2.9E-12 65.6 3.1 33 16-48 5-37 (323)
215 2pbr_A DTMP kinase, thymidylat 98.5 1.4E-07 4.9E-12 59.0 3.9 30 18-47 2-34 (195)
216 1vht_A Dephospho-COA kinase; s 98.5 1.2E-07 4E-12 60.9 3.5 31 16-47 4-34 (218)
217 3r20_A Cytidylate kinase; stru 98.4 1.2E-07 4E-12 62.3 3.5 34 16-49 9-42 (233)
218 1q3t_A Cytidylate kinase; nucl 98.4 1.3E-07 4.4E-12 61.5 3.6 36 14-49 14-49 (236)
219 2w0m_A SSO2452; RECA, SSPF, un 98.4 1.4E-07 4.7E-12 60.4 3.7 28 13-40 20-47 (235)
220 2grj_A Dephospho-COA kinase; T 98.4 1.1E-07 3.9E-12 60.5 3.3 34 16-49 12-45 (192)
221 1svm_A Large T antigen; AAA+ f 98.4 1.6E-07 5.5E-12 65.5 4.2 33 13-45 166-198 (377)
222 1u0j_A DNA replication protein 98.4 1.8E-07 6.2E-12 62.5 4.3 27 14-40 102-128 (267)
223 3qf4_B Uncharacterized ABC tra 98.4 9.6E-08 3.3E-12 69.9 3.2 45 1-45 362-410 (598)
224 3a4m_A L-seryl-tRNA(SEC) kinas 98.4 1.8E-07 6.1E-12 61.9 4.2 31 15-45 3-36 (260)
225 3lnc_A Guanylate kinase, GMP k 98.4 7.5E-08 2.6E-12 62.4 2.1 28 13-40 24-52 (231)
226 3a8t_A Adenylate isopentenyltr 98.4 1E-07 3.4E-12 65.6 2.7 33 16-48 40-72 (339)
227 3ney_A 55 kDa erythrocyte memb 98.4 2.1E-07 7.3E-12 59.6 4.0 27 15-41 18-44 (197)
228 3k1j_A LON protease, ATP-depen 98.4 9E-08 3.1E-12 70.1 2.4 32 13-44 57-88 (604)
229 3aez_A Pantothenate kinase; tr 98.4 2.3E-07 8E-12 63.1 4.2 30 13-42 87-116 (312)
230 1ex7_A Guanylate kinase; subst 98.4 2E-07 6.9E-12 59.2 3.6 26 17-42 2-27 (186)
231 1p9r_A General secretion pathw 98.4 1.5E-07 5.1E-12 66.4 3.3 31 14-44 165-195 (418)
232 2yvu_A Probable adenylyl-sulfa 98.4 2.2E-07 7.6E-12 58.2 3.7 28 15-42 12-39 (186)
233 2i3b_A HCR-ntpase, human cance 98.4 2.3E-07 7.8E-12 59.0 3.7 26 16-41 1-26 (189)
234 2gza_A Type IV secretion syste 98.4 6.3E-08 2.2E-12 67.0 1.2 31 13-43 172-202 (361)
235 3b9q_A Chloroplast SRP recepto 98.4 2.8E-07 9.4E-12 62.5 4.2 29 13-41 97-125 (302)
236 2yl4_A ATP-binding cassette SU 98.4 8.9E-08 3E-12 70.0 1.8 39 7-45 358-399 (595)
237 3bk7_A ABC transporter ATP-bin 98.4 1.8E-07 6.1E-12 68.8 3.3 44 2-45 100-146 (607)
238 1m7g_A Adenylylsulfate kinase; 98.4 2.8E-07 9.4E-12 59.0 3.8 29 13-41 22-50 (211)
239 3qf4_A ABC transporter, ATP-bi 98.4 9.7E-08 3.3E-12 69.8 1.7 40 6-45 356-398 (587)
240 1rj9_A FTSY, signal recognitio 98.4 3.3E-07 1.1E-11 62.2 4.2 29 15-43 101-129 (304)
241 2dpy_A FLII, flagellum-specifi 98.4 2.4E-07 8.1E-12 65.8 3.6 38 6-43 145-184 (438)
242 2cvh_A DNA repair and recombin 98.4 3.3E-07 1.1E-11 58.4 3.9 26 13-38 17-42 (220)
243 1uj2_A Uridine-cytidine kinase 98.4 2.9E-07 1E-11 60.4 3.7 28 16-43 22-49 (252)
244 4a82_A Cystic fibrosis transme 98.4 8.9E-08 3.1E-12 69.8 1.3 45 2-46 348-397 (578)
245 2z0h_A DTMP kinase, thymidylat 98.4 3.2E-07 1.1E-11 57.6 3.6 28 18-45 2-32 (197)
246 1n0w_A DNA repair protein RAD5 98.3 3.1E-07 1.1E-11 59.3 3.6 28 13-40 21-48 (243)
247 1ltq_A Polynucleotide kinase; 98.3 2.4E-07 8.1E-12 62.0 3.0 29 17-45 3-32 (301)
248 2h92_A Cytidylate kinase; ross 98.3 2.8E-07 9.6E-12 59.0 3.2 34 16-49 3-36 (219)
249 3jvv_A Twitching mobility prot 98.3 2.5E-07 8.4E-12 64.1 3.1 30 13-42 120-149 (356)
250 3j16_B RLI1P; ribosome recycli 98.3 3.1E-07 1.1E-11 67.5 3.8 35 13-47 100-134 (608)
251 2iw3_A Elongation factor 3A; a 98.3 1.9E-07 6.4E-12 71.7 2.6 37 2-38 444-483 (986)
252 2obl_A ESCN; ATPase, hydrolase 98.3 2.2E-07 7.5E-12 64.1 2.6 37 7-43 60-98 (347)
253 2qmh_A HPR kinase/phosphorylas 98.3 5.6E-07 1.9E-11 57.9 4.3 40 15-55 33-72 (205)
254 1cr0_A DNA primase/helicase; R 98.3 4.2E-07 1.4E-11 60.8 3.9 29 13-41 32-60 (296)
255 2og2_A Putative signal recogni 98.3 4.8E-07 1.7E-11 62.7 4.3 29 13-41 154-182 (359)
256 2qag_B Septin-6, protein NEDD5 98.3 2.7E-07 9.3E-12 65.3 2.9 37 2-39 24-65 (427)
257 4eaq_A DTMP kinase, thymidylat 98.3 8E-07 2.7E-11 57.9 4.9 30 13-42 23-52 (229)
258 3foz_A TRNA delta(2)-isopenten 98.3 3.9E-07 1.4E-11 62.1 3.4 33 16-48 10-42 (316)
259 2f6r_A COA synthase, bifunctio 98.3 3.8E-07 1.3E-11 61.0 3.3 31 16-47 75-105 (281)
260 3d3q_A TRNA delta(2)-isopenten 98.3 3.4E-07 1.2E-11 63.1 3.1 32 17-48 8-39 (340)
261 1rz3_A Hypothetical protein rb 98.3 5.8E-07 2E-11 57.1 4.0 27 14-40 20-46 (201)
262 3ozx_A RNAse L inhibitor; ATP 98.3 3.7E-07 1.3E-11 66.2 3.4 45 2-46 8-55 (538)
263 2ewv_A Twitching motility prot 98.3 5.6E-07 1.9E-11 62.6 4.1 30 13-42 133-162 (372)
264 3exa_A TRNA delta(2)-isopenten 98.3 4E-07 1.4E-11 62.2 3.1 33 16-48 3-35 (322)
265 3kta_A Chromosome segregation 98.3 7.1E-07 2.4E-11 55.5 4.0 26 17-42 27-52 (182)
266 1nlf_A Regulatory protein REPA 98.3 5E-07 1.7E-11 60.1 3.5 29 13-41 27-55 (279)
267 1sq5_A Pantothenate kinase; P- 98.3 6.2E-07 2.1E-11 60.7 3.9 28 14-41 78-105 (308)
268 3e70_C DPA, signal recognition 98.3 6.6E-07 2.3E-11 61.3 4.1 29 14-42 127-155 (328)
269 2vhj_A Ntpase P4, P4; non- hyd 98.3 5.8E-07 2E-11 61.6 3.7 29 13-41 120-148 (331)
270 1lw7_A Transcriptional regulat 98.3 4.9E-07 1.7E-11 62.4 3.3 32 13-44 165-198 (365)
271 2qm8_A GTPase/ATPase; G protei 98.2 2.5E-07 8.4E-12 63.5 1.4 28 13-40 52-79 (337)
272 2ga8_A Hypothetical 39.9 kDa p 98.2 4.1E-07 1.4E-11 63.0 2.4 32 13-44 19-52 (359)
273 2npi_A Protein CLP1; CLP1-PCF1 98.2 6E-07 2.1E-11 64.0 3.4 29 13-41 135-163 (460)
274 2yhs_A FTSY, cell division pro 98.2 8.9E-07 3E-11 63.7 4.1 30 13-42 290-319 (503)
275 2dr3_A UPF0273 protein PH0284; 98.2 7.8E-07 2.7E-11 57.5 3.6 28 13-40 20-47 (247)
276 2pt7_A CAG-ALFA; ATPase, prote 98.2 3.1E-07 1.1E-11 62.9 1.7 31 13-43 168-198 (330)
277 3fdi_A Uncharacterized protein 98.2 1.2E-06 4E-11 56.1 4.0 30 17-46 7-36 (201)
278 3sop_A Neuronal-specific septi 98.2 9.5E-07 3.2E-11 58.9 3.5 27 18-44 4-30 (270)
279 1pzn_A RAD51, DNA repair and r 98.2 9.3E-07 3.2E-11 60.9 3.5 29 13-41 128-156 (349)
280 2iw3_A Elongation factor 3A; a 98.2 3E-07 1E-11 70.6 0.9 43 2-44 680-727 (986)
281 1odf_A YGR205W, hypothetical 3 98.2 1.3E-06 4.6E-11 58.8 3.7 28 15-42 30-57 (290)
282 3gmt_A Adenylate kinase; ssgci 98.2 1.7E-06 5.7E-11 56.7 3.9 31 18-48 10-40 (230)
283 3eph_A TRNA isopentenyltransfe 98.2 1.1E-06 3.7E-11 61.8 3.1 32 16-47 2-33 (409)
284 3hr8_A Protein RECA; alpha and 98.1 1.3E-06 4.5E-11 60.5 3.5 29 13-41 58-86 (356)
285 3euj_A Chromosome partition pr 98.1 2.3E-06 7.9E-11 61.4 4.7 33 13-46 27-59 (483)
286 1yqt_A RNAse L inhibitor; ATP- 98.1 1.4E-06 4.7E-11 63.2 3.6 34 13-46 309-342 (538)
287 2oap_1 GSPE-2, type II secreti 98.1 8.3E-07 2.8E-11 64.1 2.4 31 13-43 257-287 (511)
288 1pui_A ENGB, probable GTP-bind 98.1 5.5E-07 1.9E-11 56.9 1.3 33 8-40 17-50 (210)
289 1gtv_A TMK, thymidylate kinase 98.1 4.4E-07 1.5E-11 57.7 0.8 25 18-42 2-26 (214)
290 1a7j_A Phosphoribulokinase; tr 98.1 6.2E-07 2.1E-11 60.4 1.4 26 16-41 5-30 (290)
291 3cr8_A Sulfate adenylyltranfer 98.1 8.1E-07 2.8E-11 64.7 2.1 29 13-41 366-394 (552)
292 3bk7_A ABC transporter ATP-bin 98.1 1.6E-06 5.4E-11 63.8 3.6 34 13-46 379-412 (607)
293 3ozx_A RNAse L inhibitor; ATP 98.1 1.4E-06 4.6E-11 63.3 3.0 35 13-47 291-325 (538)
294 1vma_A Cell division protein F 98.1 2.5E-06 8.6E-11 57.9 4.2 29 14-42 102-130 (306)
295 2px0_A Flagellar biosynthesis 98.1 2.3E-06 8E-11 57.8 3.8 28 14-41 103-130 (296)
296 2zr9_A Protein RECA, recombina 98.1 2.3E-06 7.8E-11 59.1 3.5 29 13-41 58-86 (349)
297 1x6v_B Bifunctional 3'-phospho 98.1 2.7E-06 9.2E-11 62.8 4.1 34 15-48 51-87 (630)
298 4f4c_A Multidrug resistance pr 98.1 1.5E-06 5.1E-11 68.6 2.6 41 6-46 431-474 (1321)
299 3g5u_A MCG1178, multidrug resi 98.1 1.3E-06 4.5E-11 68.8 2.3 39 7-45 404-445 (1284)
300 2axn_A 6-phosphofructo-2-kinas 98.1 2.6E-06 8.8E-11 61.6 3.5 31 15-45 34-64 (520)
301 2vp4_A Deoxynucleoside kinase; 98.0 1.7E-06 5.7E-11 56.1 2.2 26 14-39 18-43 (230)
302 1f2t_A RAD50 ABC-ATPase; DNA d 98.0 4.6E-06 1.6E-10 50.9 4.0 25 16-40 23-47 (149)
303 3lda_A DNA repair protein RAD5 98.0 3.4E-06 1.2E-10 59.2 3.8 28 13-40 175-202 (400)
304 4i1u_A Dephospho-COA kinase; s 98.0 9E-06 3.1E-10 52.5 5.5 32 17-49 10-41 (210)
305 1tf7_A KAIC; homohexamer, hexa 98.0 3E-06 1E-10 61.1 3.5 28 13-40 36-65 (525)
306 3g5u_A MCG1178, multidrug resi 98.0 2.8E-06 9.6E-11 66.9 3.5 38 7-44 1047-1087(1284)
307 3hdt_A Putative kinase; struct 98.0 4.3E-06 1.5E-10 54.4 3.8 34 16-49 14-47 (223)
308 1v5w_A DMC1, meiotic recombina 98.0 4.8E-06 1.6E-10 57.2 4.2 29 13-41 119-147 (343)
309 2f1r_A Molybdopterin-guanine d 98.0 1.5E-06 5E-11 54.4 1.5 27 17-43 3-29 (171)
310 2z43_A DNA repair and recombin 98.0 4.1E-06 1.4E-10 57.0 3.8 29 13-41 104-132 (324)
311 4f4c_A Multidrug resistance pr 98.0 1.5E-06 5.2E-11 68.6 1.8 39 7-45 1093-1134(1321)
312 2yv5_A YJEQ protein; hydrolase 98.0 4.5E-06 1.5E-10 56.4 3.9 34 14-48 163-196 (302)
313 1np6_A Molybdopterin-guanine d 98.0 5.1E-06 1.7E-10 52.1 3.8 26 16-41 6-31 (174)
314 1xjc_A MOBB protein homolog; s 98.0 4.2E-06 1.4E-10 52.3 3.3 28 16-43 4-31 (169)
315 3tqf_A HPR(Ser) kinase; transf 98.0 1.1E-05 3.6E-10 50.9 5.1 42 15-57 15-56 (181)
316 2qnr_A Septin-2, protein NEDD5 98.0 2.9E-06 9.9E-11 57.3 2.7 35 2-39 7-41 (301)
317 1w5s_A Origin recognition comp 98.0 3.7E-06 1.3E-10 58.1 3.3 27 15-41 49-77 (412)
318 2rcn_A Probable GTPase ENGC; Y 98.0 3.9E-06 1.3E-10 58.2 3.4 31 15-45 214-245 (358)
319 1u0l_A Probable GTPase ENGC; p 98.0 3.2E-06 1.1E-10 57.1 2.9 33 14-46 167-199 (301)
320 4b3f_X DNA-binding protein smu 98.0 5.4E-06 1.9E-10 61.1 4.3 26 15-40 204-229 (646)
321 4edh_A DTMP kinase, thymidylat 98.0 6.2E-06 2.1E-10 53.2 4.0 30 15-44 5-34 (213)
322 1w1w_A Structural maintenance 98.0 7.9E-06 2.7E-10 57.5 4.9 31 13-43 23-53 (430)
323 1bif_A 6-phosphofructo-2-kinas 98.0 4.5E-06 1.5E-10 59.4 3.5 31 16-46 39-69 (469)
324 2zts_A Putative uncharacterize 98.0 5.6E-06 1.9E-10 53.4 3.7 27 13-39 27-53 (251)
325 1oix_A RAS-related protein RAB 98.0 4.9E-06 1.7E-10 52.2 3.3 25 17-41 30-54 (191)
326 2f9l_A RAB11B, member RAS onco 98.0 5.5E-06 1.9E-10 52.1 3.5 24 17-40 6-29 (199)
327 2fna_A Conserved hypothetical 98.0 5.4E-06 1.9E-10 55.9 3.6 26 17-42 31-56 (357)
328 2qag_C Septin-7; cell cycle, c 98.0 5.3E-06 1.8E-10 58.6 3.6 24 18-41 33-56 (418)
329 1g8f_A Sulfate adenylyltransfe 98.0 6.1E-06 2.1E-10 59.6 3.9 28 15-42 394-421 (511)
330 2ocp_A DGK, deoxyguanosine kin 98.0 6.4E-06 2.2E-10 53.6 3.7 26 16-41 2-27 (241)
331 1c9k_A COBU, adenosylcobinamid 97.9 3.6E-06 1.2E-10 53.2 2.4 25 19-44 2-26 (180)
332 1zu4_A FTSY; GTPase, signal re 97.9 7.7E-06 2.6E-10 55.8 4.1 30 13-42 102-131 (320)
333 1u94_A RECA protein, recombina 97.9 6.5E-06 2.2E-10 57.0 3.7 29 13-41 60-88 (356)
334 3qks_A DNA double-strand break 97.9 8.2E-06 2.8E-10 52.1 3.8 28 16-43 23-50 (203)
335 2i1q_A DNA repair and recombin 97.9 6.1E-06 2.1E-10 55.9 3.4 28 13-40 95-122 (322)
336 1tf7_A KAIC; homohexamer, hexa 97.9 6.3E-06 2.2E-10 59.4 3.6 30 13-42 278-307 (525)
337 1tq4_A IIGP1, interferon-induc 97.9 4E-06 1.4E-10 59.1 2.5 25 18-42 71-95 (413)
338 3j16_B RLI1P; ribosome recycli 97.9 7.8E-06 2.7E-10 60.2 4.0 29 16-44 378-406 (608)
339 3qf7_A RAD50; ABC-ATPase, ATPa 97.9 8E-06 2.7E-10 56.6 3.8 24 17-40 24-47 (365)
340 1ewq_A DNA mismatch repair pro 97.9 8.6E-06 2.9E-10 61.3 4.2 25 16-40 576-600 (765)
341 2qen_A Walker-type ATPase; unk 97.9 1E-05 3.4E-10 54.5 3.9 27 15-41 30-56 (350)
342 2orw_A Thymidine kinase; TMTK, 97.9 1E-05 3.6E-10 50.9 3.7 25 16-40 3-27 (184)
343 1m8p_A Sulfate adenylyltransfe 97.9 8.4E-06 2.9E-10 59.6 3.6 26 16-41 396-421 (573)
344 3kl4_A SRP54, signal recogniti 97.9 9.5E-06 3.3E-10 57.5 3.7 28 15-42 96-123 (433)
345 1t9h_A YLOQ, probable GTPase E 97.9 1.5E-06 5E-11 59.1 -0.5 34 13-46 170-203 (307)
346 3ice_A Transcription terminati 97.9 1.6E-05 5.5E-10 55.9 4.7 30 13-42 171-200 (422)
347 3lv8_A DTMP kinase, thymidylat 97.9 8.9E-06 3E-10 53.3 3.2 29 15-43 26-54 (236)
348 3tmk_A Thymidylate kinase; pho 97.9 1.4E-05 4.7E-10 51.8 4.0 28 15-42 4-31 (216)
349 3thx_B DNA mismatch repair pro 97.9 6.5E-06 2.2E-10 63.0 2.8 32 7-38 661-695 (918)
350 3v9p_A DTMP kinase, thymidylat 97.9 1E-05 3.4E-10 52.8 3.3 29 14-42 23-51 (227)
351 4aby_A DNA repair protein RECN 97.9 2.8E-06 9.5E-11 59.2 0.7 29 13-42 58-86 (415)
352 3bh0_A DNAB-like replicative h 97.9 1.5E-05 5.1E-10 54.1 4.2 29 13-41 65-93 (315)
353 3ux8_A Excinuclease ABC, A sub 97.8 5.6E-06 1.9E-10 61.3 2.1 25 13-37 345-369 (670)
354 1p5z_B DCK, deoxycytidine kina 97.8 4.8E-06 1.6E-10 54.9 1.5 28 14-41 22-49 (263)
355 3qkt_A DNA double-strand break 97.8 1.5E-05 5.2E-10 54.5 4.0 28 16-43 23-50 (339)
356 1qhl_A Protein (cell division 97.8 3.3E-06 1.1E-10 55.1 0.6 27 17-43 28-54 (227)
357 2o8b_B DNA mismatch repair pro 97.8 1.4E-05 4.9E-10 61.8 4.1 22 16-37 789-810 (1022)
358 2r6a_A DNAB helicase, replicat 97.8 1.7E-05 5.9E-10 56.2 4.3 29 13-41 200-228 (454)
359 1xp8_A RECA protein, recombina 97.8 1.3E-05 4.6E-10 55.6 3.5 29 13-41 71-99 (366)
360 1ls1_A Signal recognition part 97.8 1.8E-05 6.3E-10 53.3 4.1 28 15-42 97-124 (295)
361 2gj8_A MNME, tRNA modification 97.8 1.2E-05 4.3E-10 49.5 3.0 26 15-40 3-28 (172)
362 3thx_A DNA mismatch repair pro 97.8 1.4E-05 4.9E-10 61.3 3.9 25 13-37 659-683 (934)
363 3cmw_A Protein RECA, recombina 97.8 1.3E-05 4.3E-10 64.7 3.7 31 13-43 1079-1109(1706)
364 3ld9_A DTMP kinase, thymidylat 97.8 1.7E-05 5.8E-10 51.6 3.6 28 15-42 20-47 (223)
365 2o5v_A DNA replication and rep 97.8 1.6E-05 5.6E-10 55.0 3.8 30 13-43 24-53 (359)
366 1wb9_A DNA mismatch repair pro 97.8 1.6E-05 5.4E-10 60.2 3.9 26 14-39 605-630 (800)
367 3f8t_A Predicted ATPase involv 97.8 1.2E-05 3.9E-10 57.8 3.0 35 55-89 337-383 (506)
368 2dyk_A GTP-binding protein; GT 97.8 1.8E-05 6.1E-10 47.5 3.5 24 17-40 2-25 (161)
369 2wji_A Ferrous iron transport 97.8 1.7E-05 5.7E-10 48.4 3.3 23 17-39 4-26 (165)
370 3cmu_A Protein RECA, recombina 97.8 1.5E-05 5.1E-10 65.1 3.8 31 13-43 1424-1454(2050)
371 4tmk_A Protein (thymidylate ki 97.8 2.1E-05 7E-10 50.8 3.8 28 16-43 3-30 (213)
372 2www_A Methylmalonic aciduria 97.8 2.1E-05 7.1E-10 54.2 4.1 25 16-40 74-98 (349)
373 1nij_A Hypothetical protein YJ 97.8 1.2E-05 3.9E-10 54.7 2.8 24 17-40 5-28 (318)
374 2zej_A Dardarin, leucine-rich 97.8 1.3E-05 4.5E-10 49.7 2.8 22 18-39 4-25 (184)
375 2lkc_A Translation initiation 97.8 2.3E-05 8E-10 47.8 3.8 27 13-39 5-31 (178)
376 3upu_A ATP-dependent DNA helic 97.8 2.3E-05 7.9E-10 55.6 4.2 26 17-42 46-71 (459)
377 3io5_A Recombination and repai 97.8 1.9E-05 6.3E-10 54.2 3.5 27 13-40 26-52 (333)
378 3vkg_A Dynein heavy chain, cyt 97.8 0.00011 3.9E-09 62.1 8.6 81 15-96 603-749 (3245)
379 3ux8_A Excinuclease ABC, A sub 97.8 1.3E-05 4.3E-10 59.4 2.8 26 8-33 33-61 (670)
380 3ihw_A Centg3; RAS, centaurin, 97.8 0.00037 1.3E-08 43.2 9.2 23 18-40 22-44 (184)
381 2ged_A SR-beta, signal recogni 97.8 2.6E-05 9E-10 48.4 3.9 25 16-40 48-72 (193)
382 3dm5_A SRP54, signal recogniti 97.7 2.6E-05 8.8E-10 55.5 4.1 29 15-43 99-127 (443)
383 2wjg_A FEOB, ferrous iron tran 97.7 1.9E-05 6.6E-10 48.8 3.1 23 17-39 8-30 (188)
384 2b8t_A Thymidine kinase; deoxy 97.7 2.8E-05 9.6E-10 50.6 4.0 29 13-41 9-37 (223)
385 1z2a_A RAS-related protein RAB 97.7 2.4E-05 8.3E-10 47.2 3.4 24 17-40 6-29 (168)
386 1nrj_B SR-beta, signal recogni 97.7 2.9E-05 1E-09 49.2 3.8 25 16-40 12-36 (218)
387 3e1s_A Exodeoxyribonuclease V, 97.7 2.7E-05 9.1E-10 57.0 4.0 26 16-41 204-229 (574)
388 1e69_A Chromosome segregation 97.7 2.1E-05 7E-10 53.4 3.2 25 17-41 25-49 (322)
389 1kao_A RAP2A; GTP-binding prot 97.7 2.9E-05 9.8E-10 46.7 3.5 24 17-40 4-27 (167)
390 2ce2_X GTPase HRAS; signaling 97.7 2.7E-05 9.2E-10 46.7 3.2 23 18-40 5-27 (166)
391 2p67_A LAO/AO transport system 97.7 3.6E-05 1.2E-09 52.7 4.0 28 13-40 53-80 (341)
392 2q6t_A DNAB replication FORK h 97.7 3.4E-05 1.2E-09 54.5 4.0 29 13-41 197-225 (444)
393 1ek0_A Protein (GTP-binding pr 97.7 3.3E-05 1.1E-09 46.6 3.4 24 17-40 4-27 (170)
394 1u8z_A RAS-related protein RAL 97.7 3.4E-05 1.1E-09 46.4 3.4 24 17-40 5-28 (168)
395 1z0j_A RAB-22, RAS-related pro 97.7 3.5E-05 1.2E-09 46.6 3.5 24 17-40 7-30 (170)
396 1upt_A ARL1, ADP-ribosylation 97.7 4.3E-05 1.5E-09 46.3 3.9 25 15-39 6-30 (171)
397 1z08_A RAS-related protein RAB 97.7 3.6E-05 1.2E-09 46.6 3.5 24 17-40 7-30 (170)
398 2nzj_A GTP-binding protein REM 97.7 3.2E-05 1.1E-09 47.0 3.3 24 17-40 5-28 (175)
399 1wms_A RAB-9, RAB9, RAS-relate 97.7 3.5E-05 1.2E-09 47.0 3.5 24 17-40 8-31 (177)
400 2v3c_C SRP54, signal recogniti 97.7 2.5E-05 8.7E-10 55.3 3.2 26 16-41 99-124 (432)
401 1ky3_A GTP-binding protein YPT 97.7 3.6E-05 1.2E-09 47.0 3.5 24 17-40 9-32 (182)
402 1g16_A RAS-related protein SEC 97.7 3.4E-05 1.2E-09 46.6 3.2 23 17-39 4-26 (170)
403 2erx_A GTP-binding protein DI- 97.6 3.4E-05 1.1E-09 46.6 3.2 23 17-39 4-26 (172)
404 2wsm_A Hydrogenase expression/ 97.6 4.2E-05 1.4E-09 48.6 3.8 26 16-41 30-55 (221)
405 1c1y_A RAS-related protein RAP 97.6 4.2E-05 1.4E-09 46.1 3.4 23 17-39 4-26 (167)
406 3oes_A GTPase rhebl1; small GT 97.6 0.00066 2.2E-08 42.4 9.1 25 16-40 24-48 (201)
407 3q85_A GTP-binding protein REM 97.6 3.9E-05 1.3E-09 46.4 3.3 21 18-38 4-24 (169)
408 1r2q_A RAS-related protein RAB 97.6 4.3E-05 1.5E-09 46.1 3.4 23 17-39 7-29 (170)
409 2ffh_A Protein (FFH); SRP54, s 97.6 4.9E-05 1.7E-09 53.8 4.1 29 15-43 97-125 (425)
410 3bc1_A RAS-related protein RAB 97.6 4.3E-05 1.5E-09 47.1 3.4 23 17-39 12-34 (195)
411 1j8m_F SRP54, signal recogniti 97.6 3.6E-05 1.2E-09 52.0 3.3 26 16-41 98-123 (297)
412 2hxs_A RAB-26, RAS-related pro 97.6 4.4E-05 1.5E-09 46.6 3.4 24 17-40 7-30 (178)
413 2gks_A Bifunctional SAT/APS ki 97.6 3.9E-05 1.4E-09 55.8 3.6 27 16-42 372-398 (546)
414 1r8s_A ADP-ribosylation factor 97.6 5.1E-05 1.7E-09 45.7 3.6 23 18-40 2-24 (164)
415 2r2a_A Uncharacterized protein 97.6 4.7E-05 1.6E-09 48.6 3.6 22 18-39 7-28 (199)
416 2a5y_B CED-4; apoptosis; HET: 97.6 6.8E-05 2.3E-09 54.2 4.7 23 16-38 152-174 (549)
417 3clv_A RAB5 protein, putative; 97.6 4.9E-05 1.7E-09 47.1 3.5 24 16-39 7-30 (208)
418 4dsu_A GTPase KRAS, isoform 2B 97.6 5E-05 1.7E-09 46.7 3.5 24 17-40 5-28 (189)
419 3q72_A GTP-binding protein RAD 97.6 3.8E-05 1.3E-09 46.3 2.9 21 18-38 4-24 (166)
420 2fn4_A P23, RAS-related protei 97.6 4.6E-05 1.6E-09 46.5 3.3 23 17-39 10-32 (181)
421 1z0f_A RAB14, member RAS oncog 97.6 5.2E-05 1.8E-09 46.1 3.4 25 16-40 15-39 (179)
422 3con_A GTPase NRAS; structural 97.6 5.2E-05 1.8E-09 46.9 3.4 24 17-40 22-45 (190)
423 2y8e_A RAB-protein 6, GH09086P 97.6 4.7E-05 1.6E-09 46.3 3.2 23 17-39 15-37 (179)
424 2efe_B Small GTP-binding prote 97.6 5.6E-05 1.9E-09 46.2 3.5 23 17-39 13-35 (181)
425 4a1f_A DNAB helicase, replicat 97.6 6E-05 2.1E-09 51.8 4.0 29 13-41 43-71 (338)
426 2a9k_A RAS-related protein RAL 97.6 5.4E-05 1.8E-09 46.4 3.4 24 17-40 19-42 (187)
427 2oil_A CATX-8, RAS-related pro 97.6 5.4E-05 1.8E-09 47.0 3.5 24 17-40 26-49 (193)
428 1ko7_A HPR kinase/phosphatase; 97.6 7.8E-05 2.7E-09 50.8 4.5 35 15-50 143-177 (314)
429 2hf9_A Probable hydrogenase ni 97.6 6.1E-05 2.1E-09 48.0 3.8 26 16-41 38-63 (226)
430 1m2o_B GTP-binding protein SAR 97.6 5E-05 1.7E-09 47.4 3.3 24 16-39 23-46 (190)
431 1m7b_A RND3/RHOE small GTP-bin 97.6 5.1E-05 1.7E-09 46.9 3.2 23 17-39 8-30 (184)
432 3tw8_B RAS-related protein RAB 97.6 5.2E-05 1.8E-09 46.2 3.2 23 17-39 10-32 (181)
433 1svi_A GTP-binding protein YSX 97.6 4.8E-05 1.6E-09 47.2 3.1 24 16-39 23-46 (195)
434 2bme_A RAB4A, RAS-related prot 97.6 5.3E-05 1.8E-09 46.6 3.2 25 16-40 10-34 (186)
435 1ni3_A YCHF GTPase, YCHF GTP-b 97.6 5.9E-05 2E-09 52.8 3.7 27 13-39 17-43 (392)
436 3pqc_A Probable GTP-binding pr 97.6 5.2E-05 1.8E-09 46.8 3.1 25 16-40 23-47 (195)
437 3lxx_A GTPase IMAP family memb 97.5 5.2E-05 1.8E-09 49.0 3.2 26 16-41 29-54 (239)
438 2r8r_A Sensor protein; KDPD, P 97.5 7.9E-05 2.7E-09 48.7 4.0 26 18-43 8-33 (228)
439 2gk6_A Regulator of nonsense t 97.5 6.3E-05 2.2E-09 55.3 3.9 25 16-40 195-219 (624)
440 3kkq_A RAS-related protein M-R 97.5 6.4E-05 2.2E-09 46.2 3.4 23 17-39 19-41 (183)
441 2g6b_A RAS-related protein RAB 97.5 6.5E-05 2.2E-09 45.9 3.4 25 16-40 10-34 (180)
442 3p32_A Probable GTPase RV1496/ 97.5 7.7E-05 2.6E-09 51.3 4.1 26 15-40 78-103 (355)
443 3auy_A DNA double-strand break 97.5 6.6E-05 2.3E-09 51.9 3.7 24 16-39 25-48 (371)
444 3t1o_A Gliding protein MGLA; G 97.5 6.7E-05 2.3E-09 46.4 3.4 26 17-42 15-40 (198)
445 3szr_A Interferon-induced GTP- 97.5 2.8E-05 9.5E-10 57.2 1.9 23 18-40 47-69 (608)
446 1mh1_A RAC1; GTP-binding, GTPa 97.5 6.9E-05 2.4E-09 45.9 3.4 23 17-39 6-28 (186)
447 4hlc_A DTMP kinase, thymidylat 97.5 8.2E-05 2.8E-09 47.6 3.9 26 16-41 2-27 (205)
448 1w36_D RECD, exodeoxyribonucle 97.5 6.9E-05 2.4E-09 55.1 3.9 27 15-41 163-189 (608)
449 2cxx_A Probable GTP-binding pr 97.5 5.1E-05 1.8E-09 46.7 2.9 22 18-39 3-24 (190)
450 2gf9_A RAS-related protein RAB 97.5 7E-05 2.4E-09 46.4 3.4 24 17-40 23-46 (189)
451 4ag6_A VIRB4 ATPase, type IV s 97.5 7E-05 2.4E-09 51.9 3.7 27 15-41 34-60 (392)
452 3tkl_A RAS-related protein RAB 97.5 7.1E-05 2.4E-09 46.4 3.4 24 17-40 17-40 (196)
453 2bov_A RAla, RAS-related prote 97.5 7.1E-05 2.4E-09 46.7 3.4 24 17-40 15-38 (206)
454 3k53_A Ferrous iron transport 97.5 5.1E-05 1.7E-09 50.1 2.9 23 17-39 4-26 (271)
455 1vg8_A RAS-related protein RAB 97.5 7.5E-05 2.6E-09 46.7 3.5 25 16-40 8-32 (207)
456 1z6t_A APAF-1, apoptotic prote 97.5 7E-05 2.4E-09 54.2 3.7 25 15-39 146-170 (591)
457 3bgw_A DNAB-like replicative h 97.5 8.3E-05 2.8E-09 52.8 4.0 29 13-41 194-222 (444)
458 3dz8_A RAS-related protein RAB 97.5 7.5E-05 2.6E-09 46.4 3.4 24 17-40 24-47 (191)
459 3bwd_D RAC-like GTP-binding pr 97.5 8E-05 2.7E-09 45.6 3.4 24 16-39 8-31 (182)
460 1z06_A RAS-related protein RAB 97.5 8.1E-05 2.8E-09 46.1 3.5 23 17-39 21-43 (189)
461 2fg5_A RAB-22B, RAS-related pr 97.5 7.2E-05 2.5E-09 46.6 3.3 25 16-40 23-47 (192)
462 2atv_A RERG, RAS-like estrogen 97.5 8.2E-05 2.8E-09 46.4 3.5 24 16-39 28-51 (196)
463 3c5c_A RAS-like protein 12; GD 97.5 8.4E-05 2.9E-09 46.2 3.5 24 17-40 22-45 (187)
464 2a5j_A RAS-related protein RAB 97.5 8.4E-05 2.9E-09 46.2 3.5 24 17-40 22-45 (191)
465 1x3s_A RAS-related protein RAB 97.5 8.5E-05 2.9E-09 45.9 3.4 24 17-40 16-39 (195)
466 1fzq_A ADP-ribosylation factor 97.5 7.8E-05 2.7E-09 46.1 3.3 24 16-39 16-39 (181)
467 1knx_A Probable HPR(Ser) kinas 97.5 0.00016 5.5E-09 49.3 5.0 38 15-53 146-183 (312)
468 1zd9_A ADP-ribosylation factor 97.5 8.6E-05 2.9E-09 46.1 3.4 25 16-40 22-46 (188)
469 1zbd_A Rabphilin-3A; G protein 97.5 7.4E-05 2.5E-09 46.7 3.1 25 16-40 8-32 (203)
470 3t5g_A GTP-binding protein RHE 97.5 8.1E-05 2.8E-09 45.6 3.2 23 17-39 7-29 (181)
471 3reg_A RHO-like small GTPase; 97.5 8.9E-05 3.1E-09 46.1 3.4 24 17-40 24-47 (194)
472 2iwr_A Centaurin gamma 1; ANK 97.5 6.1E-05 2.1E-09 46.1 2.6 24 17-40 8-31 (178)
473 1moz_A ARL1, ADP-ribosylation 97.5 5.1E-05 1.7E-09 46.6 2.3 24 15-38 17-40 (183)
474 2bcg_Y Protein YP2, GTP-bindin 97.5 8.3E-05 2.8E-09 46.7 3.2 24 17-40 9-32 (206)
475 3llm_A ATP-dependent RNA helic 97.5 7.1E-05 2.4E-09 48.4 3.0 24 14-37 74-97 (235)
476 2p5s_A RAS and EF-hand domain 97.5 9.5E-05 3.3E-09 46.3 3.5 24 16-39 28-51 (199)
477 1ksh_A ARF-like protein 2; sma 97.5 7.3E-05 2.5E-09 46.1 2.8 26 15-40 17-42 (186)
478 2gf0_A GTP-binding protein DI- 97.5 0.00011 3.7E-09 45.7 3.6 24 16-39 8-31 (199)
479 1sky_E F1-ATPase, F1-ATP synth 97.5 0.0001 3.4E-09 52.9 3.8 30 13-42 148-177 (473)
480 2ew1_A RAS-related protein RAB 97.4 8.9E-05 3E-09 46.9 3.2 24 17-40 27-50 (201)
481 1gwn_A RHO-related GTP-binding 97.4 8.9E-05 3E-09 47.0 3.2 23 17-39 29-51 (205)
482 3cph_A RAS-related protein SEC 97.4 0.0001 3.5E-09 46.3 3.4 24 16-39 20-43 (213)
483 2b6h_A ADP-ribosylation factor 97.4 0.00014 4.8E-09 45.4 4.1 24 15-38 28-51 (192)
484 2j37_W Signal recognition part 97.4 0.0001 3.4E-09 53.2 3.8 27 15-41 100-126 (504)
485 1ega_A Protein (GTP-binding pr 97.4 7.2E-05 2.5E-09 50.4 2.8 24 16-39 8-31 (301)
486 1f6b_A SAR1; gtpases, N-termin 97.4 8.4E-05 2.9E-09 46.7 3.0 23 16-38 25-47 (198)
487 2fh5_B SR-beta, signal recogni 97.4 0.00011 3.6E-09 46.4 3.4 25 16-40 7-31 (214)
488 2xxa_A Signal recognition part 97.4 0.00013 4.4E-09 51.7 4.1 28 15-42 99-126 (433)
489 4bas_A ADP-ribosylation factor 97.4 9.7E-05 3.3E-09 45.9 3.1 24 16-39 17-40 (199)
490 2cjw_A GTP-binding protein GEM 97.4 0.00013 4.3E-09 45.7 3.6 23 17-39 7-29 (192)
491 1zj6_A ADP-ribosylation factor 97.4 0.00012 4.2E-09 45.2 3.4 24 15-38 15-38 (187)
492 2fv8_A H6, RHO-related GTP-bin 97.4 0.00011 3.9E-09 46.2 3.3 24 17-40 26-49 (207)
493 1yrb_A ATP(GTP)binding protein 97.4 0.0003 1E-08 45.8 5.3 26 16-41 14-39 (262)
494 2fu5_C RAS-related protein RAB 97.4 6.1E-05 2.1E-09 46.2 1.8 24 16-39 8-31 (183)
495 1xx6_A Thymidine kinase; NESG, 97.4 0.00018 6E-09 45.7 4.0 28 14-41 6-33 (191)
496 2o52_A RAS-related protein RAB 97.4 0.00011 3.8E-09 46.1 3.1 24 16-39 25-48 (200)
497 2f7s_A C25KG, RAS-related prot 97.4 0.00013 4.3E-09 46.2 3.3 23 17-39 26-48 (217)
498 1q57_A DNA primase/helicase; d 97.4 8.9E-05 3E-09 53.1 2.9 31 13-43 239-269 (503)
499 2qu8_A Putative nucleolar GTP- 97.4 0.0001 3.6E-09 47.2 2.9 24 16-39 29-52 (228)
500 2h17_A ADP-ribosylation factor 97.4 8.5E-05 2.9E-09 45.8 2.4 24 16-39 21-44 (181)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.1e-22 Score=142.48 Aligned_cols=90 Identities=33% Similarity=0.380 Sum_probs=80.3
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-------------------------------------------
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA------------------------------------------- 49 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~------------------------------------------- 49 (105)
+.++++++||||||||||++|+++|++++.+++.++.
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~ 258 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRV 258 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCS
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCC
Confidence 6678999999999999999999999999999987765
Q ss_pred ---------------------eeecccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 50 ---------------------IFFKKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 50 ---------------------~~~~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
-.+....++++++|||+++.+|+|++| |||..++++.|+.+++.+||+.++++
T Consensus 259 ~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~ 334 (405)
T 4b4t_J 259 EGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRK 334 (405)
T ss_dssp CSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT
T ss_pred CCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcC
Confidence 022445678999999999999999998 99999999999999999999888754
No 2
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1e-22 Score=143.89 Aligned_cols=91 Identities=29% Similarity=0.349 Sum_probs=80.6
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-------------------------------------------
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA------------------------------------------- 49 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~------------------------------------------- 49 (105)
++++++++||||||||||++|+++|++++.+++.++.
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~ 291 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRF 291 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCS
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccC
Confidence 6778999999999999999999999999999987765
Q ss_pred ---------------------eeecccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHHHHHHh
Q psy4924 50 ---------------------IFFKKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSSCVEEL 103 (105)
Q Consensus 50 ---------------------~~~~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~~~~~l 103 (105)
-.+....++++++|||+++.+|+|+++ |||..++++.|+.+++.+||+.+++++
T Consensus 292 ~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~ 368 (434)
T 4b4t_M 292 DSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKM 368 (434)
T ss_dssp SGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHS
T ss_pred CCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCC
Confidence 022344678999999999999999998 999999999999999999999887653
No 3
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=3.3e-22 Score=141.79 Aligned_cols=90 Identities=30% Similarity=0.369 Sum_probs=80.3
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-------------------------------------------
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA------------------------------------------- 49 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~------------------------------------------- 49 (105)
+.++++++||||||||||++|+++|++++.+++.++.
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~ 319 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARF 319 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCS
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHhcCCceEeeccccccccccc
Confidence 6779999999999999999999999999999987765
Q ss_pred ---------------------eeecccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 50 ---------------------IFFKKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 50 ---------------------~~~~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
.......++++++|||+++.+|+|++| |||..++++.|+.+++.+||+.++++
T Consensus 320 ~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~ 395 (467)
T 4b4t_H 320 DDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKS 395 (467)
T ss_dssp SSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTT
T ss_pred CcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcC
Confidence 023445678999999999999999998 99999999999999999999988764
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=2.4e-22 Score=141.46 Aligned_cols=90 Identities=29% Similarity=0.316 Sum_probs=80.3
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-------------------------------------------
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA------------------------------------------- 49 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~------------------------------------------- 49 (105)
+.++++++||||||||||++|+++|.+++.+++.++.
T Consensus 213 i~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~ 292 (437)
T 4b4t_I 213 IKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRY 292 (437)
T ss_dssp CCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCS
T ss_pred CCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCC
Confidence 6778999999999999999999999999999987764
Q ss_pred ---------------------eeecccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 50 ---------------------IFFKKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 50 ---------------------~~~~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
-.+....++++++|||+++.+|+|++| |||..++++.|+.+++.+||+.++++
T Consensus 293 ~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~ 368 (437)
T 4b4t_I 293 DSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSK 368 (437)
T ss_dssp CSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTT
T ss_pred CCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcC
Confidence 023445678999999999999999998 99999999999999999999988764
No 5
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=3.8e-22 Score=141.13 Aligned_cols=91 Identities=35% Similarity=0.431 Sum_probs=79.8
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-------------------------------------------
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA------------------------------------------- 49 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~------------------------------------------- 49 (105)
+.++++++||||||||||++|+++|++++.+++.++.
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~ 291 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRF 291 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCS
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccc
Confidence 6678999999999999999999999999999987764
Q ss_pred ---------------------eeecccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHHHHHHh
Q psy4924 50 ---------------------IFFKKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSSCVEEL 103 (105)
Q Consensus 50 ---------------------~~~~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~~~~~l 103 (105)
-.+....++++++|||+++.+|+|++| |||..++++.|+.+++..||+.++.++
T Consensus 292 ~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~ 368 (437)
T 4b4t_L 292 SEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKV 368 (437)
T ss_dssp SSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTS
T ss_pred cCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCC
Confidence 013344668999999999999999998 599999999999999999999887653
No 6
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.6e-21 Score=137.69 Aligned_cols=90 Identities=33% Similarity=0.364 Sum_probs=79.2
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-------------------------------------------
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA------------------------------------------- 49 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~------------------------------------------- 49 (105)
+.++++++||||||||||++|+++|++++.+++.++.
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~ 282 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRF 282 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCS
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhcccc
Confidence 6778999999999999999999999999999987765
Q ss_pred ---------------------eeecccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeC-CCCHHHHHHHHHHHHHH
Q psy4924 50 ---------------------IFFKKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIG-FPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 50 ---------------------~~~~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~-~~~~~~~~~i~~~~~~~ 102 (105)
..+....++++++|||+++.+|+|++| |||..++++ .|+.+++..||+.++++
T Consensus 283 ~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~ 359 (428)
T 4b4t_K 283 DAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASK 359 (428)
T ss_dssp SSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHS
T ss_pred CCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 022445679999999999999999998 999999995 89999999999988764
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.76 E-value=7.5e-19 Score=131.57 Aligned_cols=89 Identities=30% Similarity=0.408 Sum_probs=78.6
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-------------------------------------------
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA------------------------------------------- 49 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~------------------------------------------- 49 (105)
+.++++++|+||||||||++|+++|++++.+++.++.
T Consensus 235 ~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~ 314 (806)
T 3cf2_A 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKRE 314 (806)
T ss_dssp CCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccC
Confidence 5678999999999999999999999999999987764
Q ss_pred ------------------eeecccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 50 ------------------IFFKKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 50 ------------------~~~~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
..+....+++++++||+++.+|+++++ ||+..+.++.|+.+++.+|++.+++
T Consensus 315 ~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~ 386 (806)
T 3cf2_A 315 KTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp TCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCS
T ss_pred CCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhc
Confidence 022344679999999999999999998 9999999999999999999987754
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.75 E-value=2.6e-19 Score=134.05 Aligned_cols=89 Identities=30% Similarity=0.411 Sum_probs=72.3
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-------------------------------------------
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA------------------------------------------- 49 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~------------------------------------------- 49 (105)
+.++++++||||||||||.+|+++|.+++.+++.++.
T Consensus 508 ~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~ 587 (806)
T 3cf2_A 508 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587 (806)
T ss_dssp CCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC----
T ss_pred CCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccC
Confidence 5668899999999999999999999999999987664
Q ss_pred ---------------------eeecccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 50 ---------------------IFFKKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 50 ---------------------~~~~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
..+....+++++++||+++.+|+|++| ||+..++++.|+.+++.+||+.+++
T Consensus 588 ~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~ 662 (806)
T 3cf2_A 588 GNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR 662 (806)
T ss_dssp ----------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSS
T ss_pred CCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhc
Confidence 023445678999999999999999999 9999999999999999999887654
No 9
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.72 E-value=4e-17 Score=111.53 Aligned_cols=90 Identities=29% Similarity=0.385 Sum_probs=74.5
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHh-CCCccccce-----------------------------e------------
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKL-SIRLQTPQA-----------------------------I------------ 50 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~-~~~~~~~~~-----------------------------~------------ 50 (105)
..++++++|+||||||||++|+++|+++ +.+++.+.. +
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~ 121 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR 121 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCS
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcccc
Confidence 3456899999999999999999999998 666654332 0
Q ss_pred --------------------ee-cccCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 51 --------------------FF-KKYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 51 --------------------~~-~~~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
.+ ....+++++++||+++.+|+++++||+..++++.|+.+++..+++.++.+
T Consensus 122 ~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~ 194 (322)
T 1xwi_A 122 SENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGT 194 (322)
T ss_dssp SSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred ccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhc
Confidence 00 12467899999999999999999999999999999999999999887643
No 10
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.72 E-value=2.8e-17 Score=112.04 Aligned_cols=89 Identities=31% Similarity=0.421 Sum_probs=75.8
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-----------------------------e--------------
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA-----------------------------I-------------- 50 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~-----------------------------~-------------- 50 (105)
.++++++|+||||||||++|+++|++++.+++.+.. +
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~ 128 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE 128 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC---
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCC
Confidence 346789999999999999999999999988876553 0
Q ss_pred ------------------ee-cccCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 51 ------------------FF-KKYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 51 ------------------~~-~~~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
.+ .....++++++||.++.+|+++.+||+..++++.|+.+++..+++.++.+
T Consensus 129 ~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~ 199 (322)
T 3eie_A 129 GESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGD 199 (322)
T ss_dssp ---CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred CcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhcc
Confidence 00 23467899999999999999999999999999999999999999987653
No 11
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.71 E-value=1.9e-17 Score=110.98 Aligned_cols=89 Identities=31% Similarity=0.490 Sum_probs=72.3
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce----------------------------------e--------
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA----------------------------------I-------- 50 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~----------------------------------~-------- 50 (105)
+..+++++|+||||||||||++++|..++..++.++. +
T Consensus 41 l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~ 120 (274)
T 2x8a_A 41 LVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRS 120 (274)
T ss_dssp CCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccC
Confidence 4456679999999999999999999998875543321 0
Q ss_pred ----------------ee---cccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 51 ----------------FF---KKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 51 ----------------~~---~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
.+ .....+++++++|.++.+|+++++ ||+..++++.|+.+++.+|++.+++
T Consensus 121 ~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 121 DRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp ------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred CCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 01 122357889999999999999998 9999999999999999999998764
No 12
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.71 E-value=4.7e-17 Score=110.08 Aligned_cols=90 Identities=30% Similarity=0.435 Sum_probs=75.5
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-----------------------------e-------------
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA-----------------------------I------------- 50 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~-----------------------------~------------- 50 (105)
+.++++++|+||||||||++|+++|.+++.+++.++. +
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~ 125 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 125 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHT
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccC
Confidence 4567899999999999999999999999988765542 0
Q ss_pred ----------------------eecccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 51 ----------------------FFKKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 51 ----------------------~~~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
.+....+++++++||+++.+|+++++ ||+..++++.|+.+++..+++.++++
T Consensus 126 ~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~ 201 (301)
T 3cf0_A 126 GNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 201 (301)
T ss_dssp TTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred CCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHcc
Confidence 01123468999999999999999998 99999999999999999999887753
No 13
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.68 E-value=1.5e-16 Score=109.97 Aligned_cols=89 Identities=31% Similarity=0.436 Sum_probs=74.3
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-----------------------------e--------------
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA-----------------------------I-------------- 50 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~-----------------------------~-------------- 50 (105)
.++++++|+||||||||++|+++|.+++.+++.+.. +
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~ 161 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE 161 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC----
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCC
Confidence 346789999999999999999999999988876543 0
Q ss_pred ---------------ee----cccCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 51 ---------------FF----KKYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 51 ---------------~~----~~~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
.+ .....++++++||.++.+|+++++||+..++++.|+.+++..+++.++..
T Consensus 162 ~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~ 232 (355)
T 2qp9_X 162 GESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGD 232 (355)
T ss_dssp --CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred CcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhh
Confidence 00 12457899999999999999999999999999999999999999887643
No 14
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.68 E-value=2.4e-16 Score=103.84 Aligned_cols=89 Identities=27% Similarity=0.431 Sum_probs=74.0
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-----------------------------e------ee------
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA-----------------------------I------FF------ 52 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~-----------------------------~------~~------ 52 (105)
..+++++|+||||+|||++|+++|++++.+++.+.. + .+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~ 116 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRST 116 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC---------
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccc
Confidence 457789999999999999999999999988765432 0 00
Q ss_pred ------------------------cccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 53 ------------------------KKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 53 ------------------------~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
.....+++++++|.++.+|+++++ ||+..+.++.|+.+++..+++.++.+
T Consensus 117 ~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~ 192 (262)
T 2qz4_A 117 TMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKS 192 (262)
T ss_dssp ----------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHH
T ss_pred cccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHh
Confidence 112467899999999999999998 99999999999999999999988765
No 15
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.67 E-value=2.5e-16 Score=105.13 Aligned_cols=89 Identities=30% Similarity=0.347 Sum_probs=75.0
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-----------------------------e--------------
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA-----------------------------I-------------- 50 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~-----------------------------~-------------- 50 (105)
..+++++|+||||+|||++++++|+.++.++..+.. +
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~ 128 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTD 128 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSS
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCcc
Confidence 567889999999999999999999999988765443 0
Q ss_pred ---------------------eecccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 51 ---------------------FFKKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 51 ---------------------~~~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
......++.++++||.++.+++++++ ||+..+.++.|+.+++..+++.....
T Consensus 129 ~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~ 203 (285)
T 3h4m_A 129 ALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRK 203 (285)
T ss_dssp SCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTT
T ss_pred ccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhc
Confidence 01223578899999999999999998 99999999999999999999887653
No 16
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.67 E-value=5.7e-16 Score=102.26 Aligned_cols=88 Identities=31% Similarity=0.499 Sum_probs=72.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-----------------------------ee--------------
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA-----------------------------IF-------------- 51 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~-----------------------------~~-------------- 51 (105)
.+++++|+|||||||||+++++++.++.+++.++. +.
T Consensus 44 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~ 123 (257)
T 1lv7_A 44 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAG 123 (257)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCC
Confidence 46789999999999999999999999877765442 00
Q ss_pred ---------------------ecccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 52 ---------------------FKKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 52 ---------------------~~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
+....+++++++||.++.+|+++.+ ||+..+.++.|+.+++.++++.+++.
T Consensus 124 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~ 197 (257)
T 1lv7_A 124 LGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 197 (257)
T ss_dssp SCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred cCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhc
Confidence 0123468899999999999999988 99999999999999999999887643
No 17
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.66 E-value=3.6e-16 Score=110.83 Aligned_cols=88 Identities=31% Similarity=0.426 Sum_probs=73.3
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHh-CCCccccce-----------------------------e-------------
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKL-SIRLQTPQA-----------------------------I------------- 50 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~-~~~~~~~~~-----------------------------~------------- 50 (105)
.++++++|+||||||||++|+++|.++ +.+++.+.. +
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~ 244 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRS 244 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSS
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCC
Confidence 356889999999999999999999999 666654432 0
Q ss_pred ----------------ee----cccCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 51 ----------------FF----KKYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 51 ----------------~~----~~~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
.+ ....+++++++||.++.+|+++++||+..++++.|+.+++..+++.++.
T Consensus 245 ~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~ 315 (444)
T 2zan_A 245 ENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLG 315 (444)
T ss_dssp CCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHT
T ss_pred CccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHh
Confidence 00 0245689999999999999999999999999999999999999988764
No 18
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.65 E-value=8.7e-16 Score=103.08 Aligned_cols=88 Identities=27% Similarity=0.430 Sum_probs=72.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-----------------------------eee-------------
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA-----------------------------IFF------------- 52 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~-----------------------------~~~------------- 52 (105)
++++++|+||||||||++|++++++++.++..+.. +.+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~ 132 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSS 132 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC---
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccC
Confidence 56899999999999999999999999987765442 000
Q ss_pred ----------------c------ccCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 53 ----------------K------KYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 53 ----------------~------~~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
. ....++++++||.++.+++++.+||+..++++.|+.+++..++.+++.+
T Consensus 133 ~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~ 204 (297)
T 3b9p_A 133 EHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQK 204 (297)
T ss_dssp --CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGG
T ss_pred cchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHh
Confidence 0 1145889999999999999999999999999999999999999887653
No 19
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.65 E-value=8.3e-16 Score=107.07 Aligned_cols=88 Identities=31% Similarity=0.429 Sum_probs=73.2
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-----------------------------eee------------
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA-----------------------------IFF------------ 52 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~-----------------------------~~~------------ 52 (105)
..+++++|+||||+|||++|+++|.+.+.+++.+.. +.+
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~ 225 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERRE 225 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC-----
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCC
Confidence 346799999999999999999999999998876553 000
Q ss_pred ----------------------cccCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 53 ----------------------KKYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 53 ----------------------~~~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
.....++++++||.++.++.++++||+..++++.|+.+++..++..++.
T Consensus 226 ~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~ 296 (389)
T 3vfd_A 226 GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLC 296 (389)
T ss_dssp ---CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHH
Confidence 0134688999999999999999999999999999999999999987764
No 20
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.64 E-value=4.7e-16 Score=104.97 Aligned_cols=87 Identities=20% Similarity=0.277 Sum_probs=68.4
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce---------------------------------ee--------
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA---------------------------------IF-------- 51 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~---------------------------------~~-------- 51 (105)
...+++++|+||||||||++|+++|++++.+++.++. +.
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~ 112 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGA 112 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC---
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhc
Confidence 3456789999999999999999999999998876653 00
Q ss_pred -----------------------e--------------cccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHH
Q psy4924 52 -----------------------F--------------KKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAI 92 (105)
Q Consensus 52 -----------------------~--------------~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~ 92 (105)
+ ....++++++|||.++.+|+++++ ||+..++ .|+.+++
T Consensus 113 ~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~r 190 (293)
T 3t15_A 113 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 190 (293)
T ss_dssp -----------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHHH
T ss_pred CCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHHH
Confidence 0 022468899999999999999986 8887776 5799999
Q ss_pred HHHHHHHHH
Q psy4924 93 FNIFSSCVE 101 (105)
Q Consensus 93 ~~i~~~~~~ 101 (105)
.+|++.++.
T Consensus 191 ~~Il~~~~~ 199 (293)
T 3t15_A 191 IGVCTGIFR 199 (293)
T ss_dssp HHHHHHHHG
T ss_pred HHHHHHhcc
Confidence 999987764
No 21
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.64 E-value=1.8e-15 Score=104.52 Aligned_cols=88 Identities=31% Similarity=0.401 Sum_probs=74.0
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-----------------------------ee-------------
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA-----------------------------IF------------- 51 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~-----------------------------~~------------- 51 (105)
..+++++|+||||||||++|+++|.+++.+++.+.. +.
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~ 194 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD 194 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC---
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCC
Confidence 457789999999999999999999999988765543 00
Q ss_pred ----------------e-----cccCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 52 ----------------F-----KKYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 52 ----------------~-----~~~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
+ .....++++++||.++.+++++.+||+..++++.|+.+++..++...+.
T Consensus 195 ~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~ 265 (357)
T 3d8b_A 195 GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMS 265 (357)
T ss_dssp ---CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHh
Confidence 0 1235788999999999999999999999999999999999999887764
No 22
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.63 E-value=1.1e-15 Score=109.24 Aligned_cols=89 Identities=28% Similarity=0.436 Sum_probs=74.3
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-----------------------------ee-------------
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA-----------------------------IF------------- 51 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~-----------------------------~~------------- 51 (105)
..+++++|+||||||||++++++|.+.+.+++.++. +.
T Consensus 47 ~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~ 126 (476)
T 2ce7_A 47 RMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGA 126 (476)
T ss_dssp CCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhccc
Confidence 346789999999999999999999999998876543 00
Q ss_pred ----------------------ecccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 52 ----------------------FKKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 52 ----------------------~~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
+....+++++++||+++.+|+++++ ||+..+.++.|+.+++..|++.++++
T Consensus 127 ~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~ 201 (476)
T 2ce7_A 127 GLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRN 201 (476)
T ss_dssp ------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred ccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHh
Confidence 0123568999999999999999987 99999999999999999999877653
No 23
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.60 E-value=2.7e-15 Score=98.87 Aligned_cols=88 Identities=30% Similarity=0.403 Sum_probs=70.1
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce----------------------------------e-ee------
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA----------------------------------I-FF------ 52 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~----------------------------------~-~~------ 52 (105)
..+++++|+|||||||||++++++..++.+++.++. + .+
T Consensus 47 ~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~ 126 (254)
T 1ixz_A 47 RIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGS 126 (254)
T ss_dssp CCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC----
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCc
Confidence 345669999999999999999999998766554332 0 00
Q ss_pred -----------------------cccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 53 -----------------------KKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 53 -----------------------~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
.....+++++++|.++.+|+++++ ||+..+.++.|+.+++.++++.+.+
T Consensus 127 ~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~ 200 (254)
T 1ixz_A 127 GVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR 200 (254)
T ss_dssp -----CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT
T ss_pred cccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc
Confidence 112346888999999999999998 8999999999999999999987654
No 24
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.59 E-value=3.1e-15 Score=107.26 Aligned_cols=90 Identities=31% Similarity=0.436 Sum_probs=75.9
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-----------------------------e-------------
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA-----------------------------I------------- 50 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~-----------------------------~------------- 50 (105)
...+.+++|+||||||||++|++++++.+.+++.+.. +
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~ 314 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKRE 314 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTT
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccc
Confidence 3557789999999999999999999999988876653 0
Q ss_pred -------------------eecccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 51 -------------------FFKKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 51 -------------------~~~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
.......++++++||+++.+|+++.+ ||+..+.++.|+.+++..++..+.++
T Consensus 315 ~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~ 387 (489)
T 3hu3_A 315 KTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN 387 (489)
T ss_dssp SCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTT
T ss_pred cccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhc
Confidence 11233578999999999999999988 89999999999999999999887653
No 25
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.57 E-value=1.2e-15 Score=101.01 Aligned_cols=89 Identities=29% Similarity=0.438 Sum_probs=72.0
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-----------------------------eee------------
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA-----------------------------IFF------------ 52 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~-----------------------------~~~------------ 52 (105)
..+++++|+||||||||++|+++|++++.+++.+.. +.+
T Consensus 42 ~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~ 121 (268)
T 2r62_A 42 KIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAA 121 (268)
T ss_dssp CCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccc
Confidence 346679999999999999999999999988766542 000
Q ss_pred ---------------------c----ccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 53 ---------------------K----KYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 53 ---------------------~----~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
. ....++++++||.++.+|+++++ ||+..+.++.|+.+++..+++.++++
T Consensus 122 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~ 198 (268)
T 2r62_A 122 GGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKG 198 (268)
T ss_dssp ------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSS
T ss_pred cccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhc
Confidence 0 11237899999999999999998 89999999999999999999877643
No 26
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.57 E-value=1.2e-14 Score=97.10 Aligned_cols=87 Identities=30% Similarity=0.408 Sum_probs=69.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce----------------------------------e-ee-------
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA----------------------------------I-FF------- 52 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~----------------------------------~-~~------- 52 (105)
.+++++|+|||||||||++++++..++.+++.++. + .+
T Consensus 72 ~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~ 151 (278)
T 1iy2_A 72 IPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG 151 (278)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC----
T ss_pred CCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccc
Confidence 35569999999999999999999998766554331 0 00
Q ss_pred ----------------------cccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 53 ----------------------KKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 53 ----------------------~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
.....+++++++|.++.+|+++++ ||+..+.++.|+.+++.++++.+.+
T Consensus 152 ~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~ 224 (278)
T 1iy2_A 152 VGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR 224 (278)
T ss_dssp ----CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT
T ss_pred cCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc
Confidence 111236888999999999999987 8999999999999999999987654
No 27
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.55 E-value=7.8e-15 Score=105.37 Aligned_cols=88 Identities=30% Similarity=0.403 Sum_probs=71.2
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce----------------------------------e-ee------
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA----------------------------------I-FF------ 52 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~----------------------------------~-~~------ 52 (105)
..+++++|+||||||||||++++|.+.+.+++.++. + .+
T Consensus 62 ~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~ 141 (499)
T 2dhr_A 62 RIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGS 141 (499)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSS
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhcc
Confidence 346679999999999999999999999877765442 0 00
Q ss_pred -----------------------cccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 53 -----------------------KKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 53 -----------------------~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
.....+++++++|.++.+|+++++ ||+..+.++.|+.+++.+|++.+.+
T Consensus 142 ~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~ 215 (499)
T 2dhr_A 142 GVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR 215 (499)
T ss_dssp STTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS
T ss_pred CcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHh
Confidence 112346889999999999999988 8999999999999999999987653
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.54 E-value=2.6e-16 Score=118.29 Aligned_cols=89 Identities=30% Similarity=0.435 Sum_probs=73.7
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-----------------------------e-------------
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA-----------------------------I------------- 50 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~-----------------------------~------------- 50 (105)
+.++++++|+||||||||++++++|..++.+++.+.. +
T Consensus 508 ~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~ 587 (806)
T 1ypw_A 508 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587 (806)
T ss_dssp CCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTT
T ss_pred CCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhcc
Confidence 4567889999999999999999999999988876553 0
Q ss_pred ----------------------eecccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 51 ----------------------FFKKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 51 ----------------------~~~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
......++++++|||+++.+|+++++ ||+..++++.|+.+++..|++.+++
T Consensus 588 ~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~ 662 (806)
T 1ypw_A 588 GNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR 662 (806)
T ss_dssp TCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTS
T ss_pred CCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhc
Confidence 11233467899999999999999999 9999999999999999999987664
No 29
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.50 E-value=1.7e-13 Score=93.32 Aligned_cols=87 Identities=20% Similarity=0.371 Sum_probs=71.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCccccce---------------------e------------------eecc--
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA---------------------I------------------FFKK-- 54 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~---------------------~------------------~~~~-- 54 (105)
...++|+||||+|||++|++++...+.++..+.. + .++.
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~ 134 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYR 134 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSHHHHHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccchhHHHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhcc
Confidence 4579999999999999999999999988765543 0 0111
Q ss_pred -----------------cCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 55 -----------------YPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 55 -----------------~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
.+++.++++||....+++++.+||+..+.++.|+.+++..++.+...+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~ 199 (338)
T 3pfi_A 135 LDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALK 199 (338)
T ss_dssp C---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred chhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHh
Confidence 124788999999999999999999999999999999999998877653
No 30
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.49 E-value=1.6e-13 Score=93.36 Aligned_cols=87 Identities=20% Similarity=0.265 Sum_probs=67.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce---------------------------------e-----------
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA---------------------------------I----------- 50 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~---------------------------------~----------- 50 (105)
.+.+++|+||||+|||++++++++.++.++..+.. +
T Consensus 45 ~~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~~ 124 (331)
T 2r44_A 45 TGGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKGNFEVKKGPVFSNFILADEVNRSPAK 124 (331)
T ss_dssp HTCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTTEEEEEECTTCSSEEEEETGGGSCHH
T ss_pred cCCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCCCCceEeccCcccccEEEEEccccCCHH
Confidence 46789999999999999999999998876543221 0
Q ss_pred -------------------eecccCCEEEEEeeCCCC-----CCCHHhhcccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 51 -------------------FFKKYPNVLIFTTSNLTG-----AIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 51 -------------------~~~~~~~~~~~~~~n~~~-----~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
.......+.+++++|... .+++++++||++.+.++.|+.+++..++++...
T Consensus 125 ~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 125 VQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp HHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 111234567788888543 389999999999999999999999999887653
No 31
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.47 E-value=2.4e-13 Score=98.46 Aligned_cols=85 Identities=26% Similarity=0.351 Sum_probs=68.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-------------------------------------e-------
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA-------------------------------------I------- 50 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~-------------------------------------~------- 50 (105)
++..++|+|||||||||++++++..++.+++.+.. +
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~ 186 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDK 186 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTTCSSSEEEEEEESSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhccCCEEEEhhhhh
Confidence 47789999999999999999999999876654322 0
Q ss_pred ---------------eecc----------------cCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHH
Q psy4924 51 ---------------FFKK----------------YPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSC 99 (105)
Q Consensus 51 ---------------~~~~----------------~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~ 99 (105)
.++. ...+++++|+|.++.+++++++|++ .+.++.|+.+++..++.++
T Consensus 187 l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~-vi~~~~~~~~e~~~Il~~~ 265 (543)
T 3m6a_A 187 MSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRME-IINIAGYTEIEKLEIVKDH 265 (543)
T ss_dssp CC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEE-EEECCCCCHHHHHHHHHHT
T ss_pred hhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhcc-eeeeCCCCHHHHHHHHHHH
Confidence 0000 1457899999999999999999997 5789999999999998887
Q ss_pred H
Q psy4924 100 V 100 (105)
Q Consensus 100 ~ 100 (105)
+
T Consensus 266 l 266 (543)
T 3m6a_A 266 L 266 (543)
T ss_dssp H
T ss_pred H
Confidence 6
No 32
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.45 E-value=1.3e-13 Score=103.63 Aligned_cols=89 Identities=31% Similarity=0.437 Sum_probs=74.1
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-----------------------------e-------------
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA-----------------------------I------------- 50 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~-----------------------------~------------- 50 (105)
+.++++++|+|||||||||+++++|.+++.+++.++. +
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~ 314 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKRE 314 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTS
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccc
Confidence 5678899999999999999999999999888766543 0
Q ss_pred -------------------eecccCCEEEEEeeCCCCCCCHHhhc--ccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 51 -------------------FFKKYPNVLIFTTSNLTGAIDLAFLD--RADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 51 -------------------~~~~~~~~~~~~~~n~~~~~d~~~~~--r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
.......+.+++++|+++.+|+++.+ ||+..+.++.|+.+++.+++..+..
T Consensus 315 ~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 315 KTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp CCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred cccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHh
Confidence 11123467899999999999999887 8999999999999999999987654
No 33
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.35 E-value=4.2e-12 Score=85.76 Aligned_cols=87 Identities=22% Similarity=0.385 Sum_probs=69.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce----------------------e------------------eec-
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA----------------------I------------------FFK- 53 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~----------------------~------------------~~~- 53 (105)
.+..++|+||+|+|||++|++++..++.++..... + .++
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~ 116 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMED 116 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSHHHHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCChHHHHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHh
Confidence 34689999999999999999999999887643321 0 000
Q ss_pred ------------------ccCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 54 ------------------KYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 54 ------------------~~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
..+++.++++||....++.++.+|++..+.++.|+.+++..++.+...
T Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~ 182 (324)
T 1hqc_A 117 FVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDAR 182 (324)
T ss_dssp SEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHH
T ss_pred hhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHH
Confidence 113567899999999999999999988899999999999888887764
No 34
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.34 E-value=1.2e-12 Score=88.03 Aligned_cols=88 Identities=18% Similarity=0.241 Sum_probs=64.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCC-------Cccccce--------------------------ee----------
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI-------RLQTPQA--------------------------IF---------- 51 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~-------~~~~~~~--------------------------~~---------- 51 (105)
.+.+++|+||||+|||++|+++|+.++. ++..++. +.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 145 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRP 145 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhcCCCEEEEEChhhhccC
Confidence 3457999999999999999999998843 3322211 00
Q ss_pred -----------------e-cccCCEEEEEeeCCCC-----CCCHHhhcccceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 52 -----------------F-KKYPNVLIFTTSNLTG-----AIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 52 -----------------~-~~~~~~~~~~~~n~~~-----~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
+ ....++.+++++|... .+++++.+||+..+.++.|+.+++..++..++.+
T Consensus 146 ~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 146 DNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp C---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 0 1123567788877542 2457788999999999999999999999888764
No 35
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.34 E-value=5.3e-12 Score=84.55 Aligned_cols=84 Identities=20% Similarity=0.290 Sum_probs=64.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce------------------------------------e--------
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA------------------------------------I-------- 50 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~------------------------------------~-------- 50 (105)
.+..++|+||||+|||++|+++++.++.+++.++. +
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l 128 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKI 128 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhc
Confidence 36789999999999999999999999876543211 0
Q ss_pred e----------------------ec-----------ccCCEEEEEee----CCCCCCCHHhhcccceEEEeCCCCHHHHH
Q psy4924 51 F----------------------FK-----------KYPNVLIFTTS----NLTGAIDLAFLDRADIKQYIGFPSAAAIF 93 (105)
Q Consensus 51 ~----------------------~~-----------~~~~~~~~~~~----n~~~~~d~~~~~r~~~~~~~~~~~~~~~~ 93 (105)
. ++ ....+.+++++ +.+..+++++.+||+..+.++.|+.+++.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~ 208 (310)
T 1ofh_A 129 CKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFE 208 (310)
T ss_dssp SCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHH
T ss_pred CccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHH
Confidence 0 00 11256677774 45678899999999988999999999998
Q ss_pred HHHHH
Q psy4924 94 NIFSS 98 (105)
Q Consensus 94 ~i~~~ 98 (105)
.++++
T Consensus 209 ~il~~ 213 (310)
T 1ofh_A 209 RILTE 213 (310)
T ss_dssp HHHHS
T ss_pred HHHHh
Confidence 88873
No 36
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.33 E-value=6e-12 Score=89.71 Aligned_cols=86 Identities=22% Similarity=0.303 Sum_probs=65.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHh----------CCCccccce--------------------------eee------
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKL----------SIRLQTPQA--------------------------IFF------ 52 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~----------~~~~~~~~~--------------------------~~~------ 52 (105)
...+++|+||||+|||++++++|..+ +.+++.++. +.+
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~e~~~~~~~~~~~~~~~~iLfiD~~~~a 279 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFIDAAIDA 279 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTHHHHHHHHHTCCCCEEEECC----
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCccccchHHHHHHHHHHHHHhcCCeEEEEeCchhH
Confidence 45689999999999999999999997 444433321 011
Q ss_pred -------cccCCEEEEEeeCCCC-----CCCHHhhcccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 53 -------KKYPNVLIFTTSNLTG-----AIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 53 -------~~~~~~~~~~~~n~~~-----~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
-....+.+|++||... .+|+++.+||.. +.++.|+.+++..++.....
T Consensus 280 ~~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~-i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 280 SNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQP-IQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp ----CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSEEE-EECCCCCHHHHHHHHHHTTT
T ss_pred HHHHHHhhcCCCEEEEecCCHHHHHHHhhcCHHHHHhCcc-ceeCCCCHHHHHHHHHHHHH
Confidence 1224577889998876 689999999985 89999999999999987654
No 37
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.33 E-value=3.7e-12 Score=90.47 Aligned_cols=84 Identities=24% Similarity=0.405 Sum_probs=65.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCccccce--------------------------e------------------ee
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA--------------------------I------------------FF 52 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~--------------------------~------------------~~ 52 (105)
..++|+||||+||||+|+++++.++.++..+.. + .+
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~l 130 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHI 130 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHH
Confidence 469999999999999999999999988776554 0 12
Q ss_pred cccCCEEEEEee--CCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 53 KKYPNVLIFTTS--NLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 53 ~~~~~~~~~~~~--n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
+. ..+.++++| |....++.++.+|+. .+.+..++.+++..++.+.+.+
T Consensus 131 e~-~~v~lI~att~n~~~~l~~aL~sR~~-v~~l~~l~~edi~~il~~~l~~ 180 (447)
T 3pvs_A 131 ED-GTITFIGATTENPSFELNSALLSRAR-VYLLKSLSTEDIEQVLTQAMED 180 (447)
T ss_dssp HT-TSCEEEEEESSCGGGSSCHHHHTTEE-EEECCCCCHHHHHHHHHHHHHC
T ss_pred hc-CceEEEecCCCCcccccCHHHhCcee-EEeeCCcCHHHHHHHHHHHHHH
Confidence 22 345566665 444688999999997 4557888899999999988764
No 38
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.32 E-value=7.2e-13 Score=94.00 Aligned_cols=80 Identities=19% Similarity=0.203 Sum_probs=31.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCccccceeee------------------------------------------
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFF------------------------------------------ 52 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~~~~------------------------------------------ 52 (105)
++++++|+||||+|||++++++|..++.+++.++.-.+
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e 128 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAE 128 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHHHHHHHHHSCC--------
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHhcchhhhhhhhhccchhhHH
Confidence 45789999999999999999999999999876553100
Q ss_pred --------------cccCCEEEEEe-eCCCCCCCHHhhc--ccceEEEeCCCCHH-HHHHHH
Q psy4924 53 --------------KKYPNVLIFTT-SNLTGAIDLAFLD--RADIKQYIGFPSAA-AIFNIF 96 (105)
Q Consensus 53 --------------~~~~~~~~~~~-~n~~~~~d~~~~~--r~~~~~~~~~~~~~-~~~~i~ 96 (105)
..... +.++ ||+++.+|+++.+ |||..++++.|+.. .+++++
T Consensus 129 ~rvl~~LL~~~dg~~~~~~--v~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 129 ERILDALLPPAKNQWGEVE--NHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp --------------------------------------------------------------
T ss_pred HHHHHHHHHHhhccccccc--cccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhh
Confidence 00011 1333 8999999999987 99999999999776 455554
No 39
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.32 E-value=1e-11 Score=85.03 Aligned_cols=85 Identities=22% Similarity=0.399 Sum_probs=65.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCccccce-----------------------e----------------eeccc--
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA-----------------------I----------------FFKKY-- 55 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~-----------------------~----------------~~~~~-- 55 (105)
..++|+||||+|||||++++|+.+++++..... + .+...
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~ 131 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQI 131 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcchhhcCHHHHHHHHHHHHhccc
Confidence 679999999999999999999999665431110 0 00000
Q ss_pred -----------------CCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 56 -----------------PNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 56 -----------------~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
+.+.++.+++.+..++..+.+|+.+...++.++.+++..++++..+
T Consensus 132 ~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 132 DIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp CC---------------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred ceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHH
Confidence 1345667888889999999999999999999999999999988764
No 40
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.31 E-value=4.4e-12 Score=85.21 Aligned_cols=47 Identities=28% Similarity=0.233 Sum_probs=39.1
Q ss_pred CEEEEEeeCC--------------------------CCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHHHh
Q psy4924 57 NVLIFTTSNL--------------------------TGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEEL 103 (105)
Q Consensus 57 ~~~~~~~~n~--------------------------~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~~l 103 (105)
+.++++++|. ...+++++++|++..+.+..|+.+++..++..++.++
T Consensus 160 ~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~ 232 (311)
T 4fcw_A 160 NTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYL 232 (311)
T ss_dssp TEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHH
T ss_pred CcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 6678999998 3467888899999998888899999999998877654
No 41
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.29 E-value=1.2e-11 Score=92.29 Aligned_cols=87 Identities=22% Similarity=0.292 Sum_probs=66.3
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHh----------CCCccccce--------------------------ee------
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKL----------SIRLQTPQA--------------------------IF------ 51 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~----------~~~~~~~~~--------------------------~~------ 51 (105)
....+++|+||||+|||++|+++|..+ +.+++.++. +.
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD~~~~ 278 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFIDAAID 278 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTHHHHHHHHHTCCCCEEEECC---
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccccccchHHHHHHHHHHHHHhcCCEEEEEcCchh
Confidence 345689999999999999999999997 554443221 01
Q ss_pred -------ecccCCEEEEEeeCCCC-----CCCHHhhcccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 52 -------FKKYPNVLIFTTSNLTG-----AIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 52 -------~~~~~~~~~~~~~n~~~-----~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
.-....+.++++||... .+|+++.+||. .+.++.|+.+++..++.....
T Consensus 279 ~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 279 ASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp -----CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCEEEEeCCChHHHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHH
Confidence 11224577889998877 78999999995 589999999999999986554
No 42
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.29 E-value=2e-12 Score=85.92 Aligned_cols=84 Identities=19% Similarity=0.271 Sum_probs=61.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce------------------------------e--------------
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA------------------------------I-------------- 50 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~------------------------------~-------------- 50 (105)
.+..++|+||||+|||++|++++...+.+++.+.. +
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~ 142 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPI 142 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCC
Confidence 45689999999999999999999999988765421 0
Q ss_pred --------------eec----ccCCEEEEEeeCCCCCCCH-HhhcccceEEEeCCCCH-HHHHHHHHH
Q psy4924 51 --------------FFK----KYPNVLIFTTSNLTGAIDL-AFLDRADIKQYIGFPSA-AAIFNIFSS 98 (105)
Q Consensus 51 --------------~~~----~~~~~~~~~~~n~~~~~d~-~~~~r~~~~~~~~~~~~-~~~~~i~~~ 98 (105)
.+. ....++++++||.++.++. .+.+||...+.++.+.. +++..++.+
T Consensus 143 ~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~ 210 (272)
T 1d2n_A 143 GPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALEL 210 (272)
T ss_dssp TTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHh
Confidence 001 2235778999999877776 56679988887765544 566665543
No 43
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.27 E-value=2.6e-12 Score=80.04 Aligned_cols=81 Identities=22% Similarity=0.307 Sum_probs=57.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHh----------CCCccccce--------------------------------e--
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKL----------SIRLQTPQA--------------------------------I-- 50 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~----------~~~~~~~~~--------------------------------~-- 50 (105)
.+..++|+||+|+|||++++.+++.+ +.++...+. +
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i 121 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFI 121 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEE
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 35789999999999999999999987 232222110 0
Q ss_pred ----e-------------------ecccCCEEEEEeeCCCC-----CCCHHhhcccceEEEeCCCCHHHHHHHH
Q psy4924 51 ----F-------------------FKKYPNVLIFTTSNLTG-----AIDLAFLDRADIKQYIGFPSAAAIFNIF 96 (105)
Q Consensus 51 ----~-------------------~~~~~~~~~~~~~n~~~-----~~d~~~~~r~~~~~~~~~~~~~~~~~i~ 96 (105)
. +....++.++++++.+. .+++++.+||+ .+.++.|+.+++.+++
T Consensus 122 De~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 122 DELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp ETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHHHHHHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred eCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEeCCHHHHHHHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 0 01123456777777664 68899999998 5789999988877654
No 44
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.26 E-value=1.9e-11 Score=82.91 Aligned_cols=85 Identities=19% Similarity=0.294 Sum_probs=61.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHh---CCCccccce----------------------------e--------------
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKL---SIRLQTPQA----------------------------I-------------- 50 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~---~~~~~~~~~----------------------------~-------------- 50 (105)
+.+++|+||||+||||+++++++.+ +.++..++. +
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~~~~~ 116 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERT 116 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTTCHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccCChHH
Confidence 4689999999999999999999988 555544332 0
Q ss_pred ------e---ecccCCEEEEEeeCCCC---CCCHHhhcccc--eEEEeCCCCHHHHHHHHHHHHH
Q psy4924 51 ------F---FKKYPNVLIFTTSNLTG---AIDLAFLDRAD--IKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 51 ------~---~~~~~~~~~~~~~n~~~---~~d~~~~~r~~--~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
. .......+++++++.+. .+++++.+|+. ..+.++. +.+++..++.+.+.
T Consensus 117 ~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~ 180 (324)
T 1l8q_A 117 QIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLK 180 (324)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHH
Confidence 0 11223455566665554 68899999986 6677777 88999998888765
No 45
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.25 E-value=3.4e-11 Score=82.00 Aligned_cols=42 Identities=12% Similarity=0.201 Sum_probs=34.6
Q ss_pred CEEEEEeeCCCC-CCCHHhhcccceEEEeCCC-CHHHHHHHHHH
Q psy4924 57 NVLIFTTSNLTG-AIDLAFLDRADIKQYIGFP-SAAAIFNIFSS 98 (105)
Q Consensus 57 ~~~~~~~~n~~~-~~d~~~~~r~~~~~~~~~~-~~~~~~~i~~~ 98 (105)
++.+++++|... .+++++++||+..+.++.| +.+.+..++++
T Consensus 187 ~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~ 230 (350)
T 1g8p_A 187 RFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRR 230 (350)
T ss_dssp CEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHH
Confidence 688899999744 8999999999998999999 56666677765
No 46
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.24 E-value=5.7e-11 Score=75.43 Aligned_cols=84 Identities=23% Similarity=0.192 Sum_probs=61.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCC-----ccccce-----------------------------e------------
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSIR-----LQTPQA-----------------------------I------------ 50 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~~-----~~~~~~-----------------------------~------------ 50 (105)
..++|+||+|+|||++++.+++.+... +..+.. +
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~ 118 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADA 118 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHHH
Confidence 359999999999999999999876322 111110 0
Q ss_pred ------ee-cccCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 51 ------FF-KKYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 51 ------~~-~~~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
.+ .......++.++|.+..++.++.+|+. .+.++.++.++...++.+...
T Consensus 119 ~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~ 175 (226)
T 2chg_A 119 QAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICE 175 (226)
T ss_dssp HHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHH
Confidence 11 123457788888988889999999988 778888888888888877654
No 47
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.24 E-value=8e-11 Score=87.81 Aligned_cols=86 Identities=24% Similarity=0.388 Sum_probs=67.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCccccce---------------------------------------e--------
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA---------------------------------------I-------- 50 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~---------------------------------------~-------- 50 (105)
.++|+||||+|||++|++++..++.+++.++. +
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~ 569 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGS
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCcccc
Confidence 69999999999999999999999866543221 0
Q ss_pred ----------eec------------ccCCEEEEEeeCCCC-------------------------CCCHHhhcccceEEE
Q psy4924 51 ----------FFK------------KYPNVLIFTTSNLTG-------------------------AIDLAFLDRADIKQY 83 (105)
Q Consensus 51 ----------~~~------------~~~~~~~~~~~n~~~-------------------------~~d~~~~~r~~~~~~ 83 (105)
.++ ...++++++|+|... .+++++++|++..+.
T Consensus 570 ~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~ 649 (758)
T 1r6b_X 570 HPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIW 649 (758)
T ss_dssp CHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEE
T ss_pred CHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCccee
Confidence 011 124677999999743 567888999998999
Q ss_pred eCCCCHHHHHHHHHHHHHHh
Q psy4924 84 IGFPSAAAIFNIFSSCVEEL 103 (105)
Q Consensus 84 ~~~~~~~~~~~i~~~~~~~l 103 (105)
++.++.+++..|+...+.++
T Consensus 650 ~~~l~~~~~~~i~~~~l~~~ 669 (758)
T 1r6b_X 650 FDHLSTDVIHQVVDKFIVEL 669 (758)
T ss_dssp CCCCCHHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHH
Confidence 99999999999998887654
No 48
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.22 E-value=5.4e-11 Score=81.62 Aligned_cols=36 Identities=25% Similarity=0.117 Sum_probs=29.8
Q ss_pred CCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 66 LTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 66 ~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
.+..+++++.+|+.. +.++.|+.+++..++.+.+..
T Consensus 239 ~~~~l~~~l~sR~~~-i~~~~~~~~e~~~il~~~~~~ 274 (368)
T 3uk6_A 239 SPHGIPIDLLDRLLI-VSTTPYSEKDTKQILRIRCEE 274 (368)
T ss_dssp EETTCCHHHHTTEEE-EEECCCCHHHHHHHHHHHHHH
T ss_pred CcccCCHHHHhhccE-EEecCCCHHHHHHHHHHHHHH
Confidence 467889999999987 688999999999998876643
No 49
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.21 E-value=1.2e-10 Score=86.92 Aligned_cols=86 Identities=22% Similarity=0.380 Sum_probs=63.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHh---CCCccccce-------------------------e------------------e
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKL---SIRLQTPQA-------------------------I------------------F 51 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~---~~~~~~~~~-------------------------~------------------~ 51 (105)
.++|+||||+|||++|++++..+ +.+++.++. + .
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~ 602 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQV 602 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHH
Confidence 69999999999999999999997 333432221 0 0
Q ss_pred ec------------ccCCEEEEEeeCCCCC------------CCHHhhcccceEEEeCCCCHHHHHHHHHHHHHHh
Q psy4924 52 FK------------KYPNVLIFTTSNLTGA------------IDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEEL 103 (105)
Q Consensus 52 ~~------------~~~~~~~~~~~n~~~~------------~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~~l 103 (105)
++ ...++.+++|||.... +.+.++.|++..+.++.++.+++..++...+.++
T Consensus 603 le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~ 678 (758)
T 3pxi_A 603 LEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQL 678 (758)
T ss_dssp HHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHH
T ss_pred hccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHH
Confidence 11 2245688999997544 6788999999999999999999999998887654
No 50
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.21 E-value=2.1e-11 Score=82.66 Aligned_cols=85 Identities=21% Similarity=0.304 Sum_probs=63.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCccccce---------------------------e--------e---------
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA---------------------------I--------F--------- 51 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~---------------------------~--------~--------- 51 (105)
+..++++||||+|||++++++++.++.++..++. + .
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~ 127 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLR 127 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCCHHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHH
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccCHHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHH
Confidence 3467888889999999999999999877765442 0 0
Q ss_pred --ec-ccCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 52 --FK-KYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 52 --~~-~~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
++ ....+.++.++|.+..+++++.+|+. .+.++.|+.+++..++.....
T Consensus 128 ~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~-~i~~~~~~~~e~~~il~~~~~ 179 (324)
T 3u61_B 128 SFMEAYSSNCSIIITANNIDGIIKPLQSRCR-VITFGQPTDEDKIEMMKQMIR 179 (324)
T ss_dssp HHHHHHGGGCEEEEEESSGGGSCTTHHHHSE-EEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCcEEEEEeCCccccCHHHHhhCc-EEEeCCCCHHHHHHHHHHHHH
Confidence 11 11356788899999999999999996 578889988887666555443
No 51
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.20 E-value=1.5e-11 Score=90.05 Aligned_cols=82 Identities=16% Similarity=0.175 Sum_probs=59.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCccccce------------------------------------------------
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA------------------------------------------------ 49 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~------------------------------------------------ 49 (105)
+++|+||||+|||++|+++++.++...+....
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~~q 408 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDEDR 408 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSHHH
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEecCCCcEEeehhhhCCHhHh
Confidence 79999999999999999999988644332110
Q ss_pred -----------ee-------ecccCCEEEEEeeCCCC-------------CCCHHhhcccce-EEEeCCCCHHHHHHHHH
Q psy4924 50 -----------IF-------FKKYPNVLIFTTSNLTG-------------AIDLAFLDRADI-KQYIGFPSAAAIFNIFS 97 (105)
Q Consensus 50 -----------~~-------~~~~~~~~~~~~~n~~~-------------~~d~~~~~r~~~-~~~~~~~~~~~~~~i~~ 97 (105)
+. .....++.+++|+|+.. .+++++++|||+ .+..++|+.+ ...+.+
T Consensus 409 ~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~ 487 (595)
T 3f9v_A 409 VAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELAN 487 (595)
T ss_dssp HHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHH
T ss_pred hhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHH
Confidence 01 12234677999999876 889999999985 5556677666 666665
Q ss_pred HHH
Q psy4924 98 SCV 100 (105)
Q Consensus 98 ~~~ 100 (105)
+.+
T Consensus 488 ~il 490 (595)
T 3f9v_A 488 YIL 490 (595)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 52
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.19 E-value=2.8e-12 Score=91.08 Aligned_cols=32 Identities=53% Similarity=0.802 Sum_probs=27.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhC--CCccc
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLS--IRLQT 46 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~--~~~~~ 46 (105)
++++++|+||||||||++|+++|++++ .+++.
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~ 95 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELGSKVPFCP 95 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEE
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEE
Confidence 457899999999999999999999998 55443
No 53
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.18 E-value=1.6e-10 Score=79.67 Aligned_cols=34 Identities=32% Similarity=0.541 Sum_probs=30.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCccccc
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQ 48 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~ 48 (105)
++.+++|+||||||||++|+++|..++.+++.++
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~ 83 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMAD 83 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEec
Confidence 4678999999999999999999999998887654
No 54
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.16 E-value=9.2e-11 Score=75.63 Aligned_cols=87 Identities=10% Similarity=0.041 Sum_probs=58.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCC---ccccce-------------------e----------------------
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIR---LQTPQA-------------------I---------------------- 50 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~---~~~~~~-------------------~---------------------- 50 (105)
.+..++|+||||+||||++++++..+... +..+.. +
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~~~~~~~~~~~l~~~l 130 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTALLEGLEQFDLICIDDVDAVAGHPLWEEAIFDLY 130 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGGGGTTGGGSSEEEEETGGGGTTCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHHhccCCCEEEEeccccccCCHHHHHHHHHHH
Confidence 47789999999999999999999887632 111110 0
Q ss_pred -eecccCCEEEEEeeC-CCC---CCCHHhhcccc--eEEEeCCCCHHHHHHHHHHHHH
Q psy4924 51 -FFKKYPNVLIFTTSN-LTG---AIDLAFLDRAD--IKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 51 -~~~~~~~~~~~~~~n-~~~---~~d~~~~~r~~--~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
.........++.+++ .+. ..+..+.+|+. ..+.++.|+.+++..++...+.
T Consensus 131 ~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~ 188 (242)
T 3bos_A 131 NRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAA 188 (242)
T ss_dssp HHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHH
T ss_pred HHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHH
Confidence 001112222344444 332 45577888885 7889999999999888887764
No 55
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.14 E-value=7.2e-11 Score=83.63 Aligned_cols=86 Identities=13% Similarity=0.199 Sum_probs=60.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHh-----CCCccccce-----------------------------e-----------
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKL-----SIRLQTPQA-----------------------------I----------- 50 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~-----~~~~~~~~~-----------------------------~----------- 50 (105)
+..++|+||||+|||||++++++.+ +.++..++. +
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK 209 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence 4689999999999999999999988 444432221 0
Q ss_pred ------------eecccCCEEEEEeeCCCCC---CCHHhhcccc--eEEEeCCCCHHHHHHHHHHHHH
Q psy4924 51 ------------FFKKYPNVLIFTTSNLTGA---IDLAFLDRAD--IKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 51 ------------~~~~~~~~~~~~~~n~~~~---~d~~~~~r~~--~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
.+......+++.+.+.+.. +++.+.+|+. ..+.++.|+.+++..++.+...
T Consensus 210 ~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~ 277 (440)
T 2z4s_A 210 TGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLE 277 (440)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 0012223444554444443 7888899886 7778899999999999988764
No 56
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.10 E-value=9.8e-10 Score=70.30 Aligned_cols=45 Identities=9% Similarity=0.127 Sum_probs=36.1
Q ss_pred CCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 56 PNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 56 ~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
..+.++.+++.+..++..+.+|+ ..+.++.++.++...++.+.+.
T Consensus 155 ~~~~~i~~t~~~~~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~ 199 (250)
T 1njg_A 155 EHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILN 199 (250)
T ss_dssp TTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHH
T ss_pred CceEEEEEeCChHhCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHH
Confidence 46778888888888888888886 5677888889998888887664
No 57
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.10 E-value=1.4e-10 Score=83.35 Aligned_cols=29 Identities=24% Similarity=0.438 Sum_probs=25.5
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
+..+.+++|+||||+|||++|++++..++
T Consensus 38 l~~~~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 38 ALSGESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp HHHTCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred HhcCCeeEeecCchHHHHHHHHHHHHHHh
Confidence 34578999999999999999999998774
No 58
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.07 E-value=2.1e-10 Score=94.28 Aligned_cols=46 Identities=20% Similarity=0.388 Sum_probs=39.7
Q ss_pred CEEEEEeeCCCC-----CCCHHhhcccceEEEeCCCCHHHHHHHHHHHHHHh
Q psy4924 57 NVLIFTTSNLTG-----AIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEEL 103 (105)
Q Consensus 57 ~~~~~~~~n~~~-----~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~~l 103 (105)
++.+++++|++. .+++++++|| ..+.++.|+.+++..|+...+...
T Consensus 1384 ~i~lIaA~Npp~~gGR~~l~~rllRrf-~vi~i~~P~~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A 1384 RIHIVGACNPPTDPGRIPMSERFTRHA-AILYLGYPSGKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp SEEEEEEECCTTSTTCCCCCHHHHTTE-EEEECCCCTTTHHHHHHHHHHHHH
T ss_pred CEEEEEecCCCccCCCccCChhhhhee-eEEEeCCCCHHHHHHHHHHHHHHH
Confidence 478899999984 8999999999 678999999999999998887543
No 59
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.06 E-value=4.7e-10 Score=76.83 Aligned_cols=48 Identities=13% Similarity=0.022 Sum_probs=36.9
Q ss_pred cCCEEEEEeeCCC---CCCCHHhhcccce-EEEeCCCCHHHHHHHHHHHHHH
Q psy4924 55 YPNVLIFTTSNLT---GAIDLAFLDRADI-KQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 55 ~~~~~~~~~~n~~---~~~d~~~~~r~~~-~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
..++.+++++|.+ ..++..+.+|+.. .+.++.++.+++..++.+.+..
T Consensus 165 ~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~ 216 (387)
T 2v1u_A 165 RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEE 216 (387)
T ss_dssp ---CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHH
T ss_pred CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHh
Confidence 3466788888877 6788888899875 7788888999999999887653
No 60
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.05 E-value=6.8e-11 Score=73.45 Aligned_cols=26 Identities=35% Similarity=0.575 Sum_probs=23.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
....++|+||+|+|||++++.+++.+
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 36689999999999999999999987
No 61
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.04 E-value=5.4e-10 Score=77.29 Aligned_cols=33 Identities=33% Similarity=0.589 Sum_probs=28.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCcccc
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTP 47 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~ 47 (105)
.+..++|+||||+|||++|+++|+.++.+++.+
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~ 103 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAIS 103 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 356799999999999999999999998776543
No 62
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.04 E-value=8.2e-10 Score=74.03 Aligned_cols=83 Identities=23% Similarity=0.208 Sum_probs=60.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC-----ccccce-----------------------------e-------------
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIR-----LQTPQA-----------------------------I------------- 50 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~-----~~~~~~-----------------------------~------------- 50 (105)
.++|+||+|+|||++++++++.+..+ +...+. +
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~ 119 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQ 119 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHH
Confidence 59999999999999999999986221 111110 0
Q ss_pred -----eec-ccCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 51 -----FFK-KYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 51 -----~~~-~~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
.++ ....+.++.++|.+..+.+++.+|+. .+.+..++.+++..++.+...
T Consensus 120 ~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~ 175 (319)
T 2chq_A 120 AALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICE 175 (319)
T ss_dssp HTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCE-EEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCe-EEEecCCCHHHHHHHHHHHHH
Confidence 112 22457788888988889999999987 677888888888888876654
No 63
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.04 E-value=4.9e-10 Score=76.58 Aligned_cols=87 Identities=22% Similarity=0.273 Sum_probs=57.6
Q ss_pred ccCCce--EEEEcCCCCCHHHHHHHHHHHhCCCccccc---------------------------------e-eee----
Q psy4924 13 ISWNRV--VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQ---------------------------------A-IFF---- 52 (105)
Q Consensus 13 ~~~~~~--ill~Gp~GsGKT~l~~~la~~~~~~~~~~~---------------------------------~-~~~---- 52 (105)
+..++. ++|+||||+||||+++++|+.+.+...... . +.+
T Consensus 41 i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~ 120 (340)
T 1sxj_C 41 VDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEAD 120 (340)
T ss_dssp HHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGG
T ss_pred HhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCC
Confidence 344444 999999999999999999998743211000 0 000
Q ss_pred --------------c-ccCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHH
Q psy4924 53 --------------K-KYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCV 100 (105)
Q Consensus 53 --------------~-~~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~ 100 (105)
+ ......++.++|.+..+.+++.+|+. .+.+..++.++....+.+.+
T Consensus 121 ~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~-~~~~~~l~~~~~~~~l~~~~ 182 (340)
T 1sxj_C 121 AMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCT-RFRFQPLPQEAIERRIANVL 182 (340)
T ss_dssp GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhce-eEeccCCCHHHHHHHHHHHH
Confidence 0 11334566778888889999999987 45566666777766666554
No 64
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.03 E-value=6e-10 Score=83.12 Aligned_cols=87 Identities=18% Similarity=0.208 Sum_probs=62.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhC----------CCccccce-------------------------------e---
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLS----------IRLQTPQA-------------------------------I--- 50 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~----------~~~~~~~~-------------------------------~--- 50 (105)
.+.+++|+||||+|||+++++++..+. ..++..+. +
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~ID 285 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFID 285 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEET
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEe
Confidence 467899999999999999999999872 22211100 0
Q ss_pred -----------------------eecccCCEEEEEeeCCC-----CCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHHH
Q psy4924 51 -----------------------FFKKYPNVLIFTTSNLT-----GAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 51 -----------------------~~~~~~~~~~~~~~n~~-----~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
.+-....+.++++++.+ ...|+++.+||+ .+.++.|+.+++..++......
T Consensus 286 Ei~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~ 364 (758)
T 1r6b_X 286 EIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPK 364 (758)
T ss_dssp TTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHH
T ss_pred chHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCchHHhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHH
Confidence 11122346677887753 356788899998 5899999999999888876643
No 65
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.03 E-value=6.2e-10 Score=75.74 Aligned_cols=43 Identities=9% Similarity=-0.066 Sum_probs=33.5
Q ss_pred CEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHH
Q psy4924 57 NVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCV 100 (105)
Q Consensus 57 ~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~ 100 (105)
...++.++|.+..+++++.+|+. .+.+..++.+++..++.+..
T Consensus 163 ~~~~il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~ 205 (353)
T 1sxj_D 163 VTRFCLICNYVTRIIDPLASQCS-KFRFKALDASNAIDRLRFIS 205 (353)
T ss_dssp TEEEEEEESCGGGSCHHHHHHSE-EEECCCCCHHHHHHHHHHHH
T ss_pred CceEEEEeCchhhCcchhhccCc-eEEeCCCCHHHHHHHHHHHH
Confidence 45566778888889999999987 66778888888887777654
No 66
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.03 E-value=8.9e-10 Score=75.29 Aligned_cols=49 Identities=8% Similarity=0.007 Sum_probs=36.1
Q ss_pred cCCEEEEEeeCCCCCCCHH----hhcccc-eEEEeCCCCHHHHHHHHHHHHHHh
Q psy4924 55 YPNVLIFTTSNLTGAIDLA----FLDRAD-IKQYIGFPSAAAIFNIFSSCVEEL 103 (105)
Q Consensus 55 ~~~~~~~~~~n~~~~~d~~----~~~r~~-~~~~~~~~~~~~~~~i~~~~~~~l 103 (105)
..++.+++.+|..+..+.. +.+|+. ..+.++..+.+++..|+++.++.+
T Consensus 161 ~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 161 NSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp SCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 3467888888887644432 345886 467778889999999999988764
No 67
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.02 E-value=2.6e-10 Score=86.21 Aligned_cols=85 Identities=24% Similarity=0.373 Sum_probs=61.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHh----------CCCccccce--------------------------------ee--
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKL----------SIRLQTPQA--------------------------------IF-- 51 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~----------~~~~~~~~~--------------------------------~~-- 51 (105)
..+++|+||||+|||++++.+|..+ +.+++.++. +.
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~ID 270 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFID 270 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEEC
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 4579999999999999999999987 444433221 00
Q ss_pred ----e-------------------cccCCEEEEEeeCCCC----CCCHHhhcccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 52 ----F-------------------KKYPNVLIFTTSNLTG----AIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 52 ----~-------------------~~~~~~~~~~~~n~~~----~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
+ .....+.++++++.+. ..|+++.+||+. +.++.|+.+++..++.....
T Consensus 271 Ei~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~at~~~~~~~~~~d~aL~rRf~~-i~l~~p~~~e~~~iL~~~~~ 346 (854)
T 1qvr_A 271 ELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYREIEKDPALERRFQP-VYVDEPTVEETISILRGLKE 346 (854)
T ss_dssp CC-------------------HHHHHTTCCCEEEEECHHHHHHHTTCTTTCSCCCC-EEECCCCHHHHHHHHHHHHH
T ss_pred cHHHHhccCCccchHHHHHHHHHHHhCCCeEEEEecCchHHhhhccCHHHHhCCce-EEeCCCCHHHHHHHHHhhhh
Confidence 0 0113445677777653 468889999996 78999999999888876654
No 68
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.98 E-value=1.9e-09 Score=77.64 Aligned_cols=32 Identities=41% Similarity=0.608 Sum_probs=28.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCccc
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQT 46 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~ 46 (105)
..+.++|+||||+|||++|+++|++++.+++.
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~ 107 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILE 107 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence 35789999999999999999999999876654
No 69
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.97 E-value=2.2e-09 Score=72.18 Aligned_cols=83 Identities=24% Similarity=0.207 Sum_probs=59.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCc-----cccce-----------------------------e-------------
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIRL-----QTPQA-----------------------------I------------- 50 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~~-----~~~~~-----------------------------~------------- 50 (105)
.++|+||+|+|||++++++++.+..+. ..+.. +
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~ 127 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQ 127 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHH
Confidence 699999999999999999999864321 11110 0
Q ss_pred -----eec-ccCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 51 -----FFK-KYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 51 -----~~~-~~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
.++ ....+.++.+++.+..+.+.+.+|+. .+.++.++.+++..++.+...
T Consensus 128 ~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~~~ 183 (327)
T 1iqp_A 128 QALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAE 183 (327)
T ss_dssp HHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEE-EEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCc-EEEecCCCHHHHHHHHHHHHH
Confidence 112 23456778888888888898888987 567777888888887776543
No 70
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.97 E-value=5.4e-09 Score=71.81 Aligned_cols=46 Identities=17% Similarity=0.088 Sum_probs=38.6
Q ss_pred CCEEEEEeeCCC---CCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 56 PNVLIFTTSNLT---GAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 56 ~~~~~~~~~n~~---~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
.++.+++++|.. ..+++.+.+|+...+.++.++.+++..++.+.+.
T Consensus 163 ~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~ 211 (384)
T 2qby_B 163 ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAE 211 (384)
T ss_dssp SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHH
T ss_pred cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 467888888876 6788888889877999999999999999988765
No 71
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.96 E-value=5.7e-09 Score=71.43 Aligned_cols=45 Identities=9% Similarity=0.127 Sum_probs=35.3
Q ss_pred CCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 56 PNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 56 ~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
..+.++.+++.+..+...+.+|+ ..+.+..++.+++..++.+.++
T Consensus 148 ~~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~ 192 (373)
T 1jr3_A 148 EHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILN 192 (373)
T ss_dssp SSEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHH
T ss_pred CceEEEEEeCChHhCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHH
Confidence 46777888888788888888887 5677888888888888877654
No 72
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.95 E-value=5.6e-10 Score=71.05 Aligned_cols=37 Identities=32% Similarity=0.337 Sum_probs=32.1
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
+.+++.++|.|||||||||+++.++..++.++++.+.
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~ 58 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDW 58 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchH
Confidence 5567899999999999999999999999999887654
No 73
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.91 E-value=2.4e-09 Score=81.00 Aligned_cols=48 Identities=27% Similarity=0.211 Sum_probs=36.9
Q ss_pred CCEEEEEeeCCC--------------------------CCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHHHh
Q psy4924 56 PNVLIFTTSNLT--------------------------GAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEEL 103 (105)
Q Consensus 56 ~~~~~~~~~n~~--------------------------~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~~l 103 (105)
.+.++|+|||.. ..+.+.++.|++..+.+..++.+++..|+..++.++
T Consensus 700 ~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~ 773 (854)
T 1qvr_A 700 RNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYL 773 (854)
T ss_dssp TTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHH
Confidence 367789999972 345677888998877777788999999988887654
No 74
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.90 E-value=5.9e-09 Score=71.26 Aligned_cols=47 Identities=9% Similarity=0.022 Sum_probs=34.1
Q ss_pred cCCEEEEEeeCCC---CCCCHHhhcccc-eEEEeCCCCHHHHHHHHHHHHH
Q psy4924 55 YPNVLIFTTSNLT---GAIDLAFLDRAD-IKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 55 ~~~~~~~~~~n~~---~~~d~~~~~r~~-~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
..++.++++++.. ..++..+.+|+. ..+.++.++.++...++.+.+.
T Consensus 161 ~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~ 211 (386)
T 2qby_A 161 KSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQ 211 (386)
T ss_dssp C--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHH
Confidence 3467788888865 356667777875 4788888899999999887654
No 75
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.88 E-value=4.4e-10 Score=73.19 Aligned_cols=42 Identities=17% Similarity=0.206 Sum_probs=35.2
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.|++..+++++ ++.|..+.|.||||||||||+++++......
T Consensus 13 ~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~ 57 (224)
T 2pcj_A 13 VIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT 57 (224)
T ss_dssp EETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS
T ss_pred EECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 46666677777 8889999999999999999999999877543
No 76
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.87 E-value=9.1e-09 Score=69.02 Aligned_cols=83 Identities=14% Similarity=0.153 Sum_probs=59.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC-----ccccc----------------------------e--e------------
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIR-----LQTPQ----------------------------A--I------------ 50 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~-----~~~~~----------------------------~--~------------ 50 (105)
.++|+||+|+|||++++.+++.+..+ +...+ . +
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~ 123 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGA 123 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHH
Confidence 49999999999999999999886321 11100 0 0
Q ss_pred ------eec-ccCCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 51 ------FFK-KYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 51 ------~~~-~~~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
.++ ......++.+++.+..+.+.+.+|+. .+.++.++.+++..++.+...
T Consensus 124 ~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~ 180 (323)
T 1sxj_B 124 QQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCA-ILRYSKLSDEDVLKRLLQIIK 180 (323)
T ss_dssp HHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCceEEEEeCChhhchhHHHhhce-EEeecCCCHHHHHHHHHHHHH
Confidence 111 12456677788888888888888887 677888889988888877553
No 77
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.87 E-value=1e-08 Score=67.66 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=25.0
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
..+..++|+||||+|||++|++++....
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4567899999999999999999998765
No 78
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.86 E-value=6.3e-10 Score=74.06 Aligned_cols=43 Identities=14% Similarity=0.273 Sum_probs=35.9
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
.|++..+++++ +..|..+.|.||||||||||+++++..+....
T Consensus 15 ~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~ 60 (262)
T 1b0u_A 15 RYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSE 60 (262)
T ss_dssp EETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred EECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 46666677777 88999999999999999999999998776443
No 79
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.86 E-value=1.1e-08 Score=70.16 Aligned_cols=47 Identities=9% Similarity=0.022 Sum_probs=35.7
Q ss_pred CCEEEEEeeCCC---CCCCHHhhcccce-EEEeCCCCHHHHHHHHHHHHHH
Q psy4924 56 PNVLIFTTSNLT---GAIDLAFLDRADI-KQYIGFPSAAAIFNIFSSCVEE 102 (105)
Q Consensus 56 ~~~~~~~~~n~~---~~~d~~~~~r~~~-~~~~~~~~~~~~~~i~~~~~~~ 102 (105)
.++.++++++.+ ..++..+.+|+.. .+.++.++.++...++...+..
T Consensus 158 ~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~ 208 (389)
T 1fnn_A 158 FRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKA 208 (389)
T ss_dssp CCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHh
Confidence 467788888876 5677777788775 6778888888888888776653
No 80
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.86 E-value=6.2e-10 Score=73.74 Aligned_cols=48 Identities=23% Similarity=0.329 Sum_probs=36.7
Q ss_pred CC-ccccccccc---ccC---CceEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 2 KF-SHSKVKSNI---ISW---NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 2 ~~-~~~~~~~~~---~~~---~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
.| ++..+++++ +.. +..+.|.|++||||||+++.++..++.++++.+.
T Consensus 27 ~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~ 81 (250)
T 3nwj_A 27 PFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDT 81 (250)
T ss_dssp -----CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHH
T ss_pred EecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcH
Confidence 45 444455555 556 8899999999999999999999999998877553
No 81
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.86 E-value=1.7e-09 Score=67.70 Aligned_cols=34 Identities=26% Similarity=0.233 Sum_probs=31.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
++.++|+||+||||||+++.++..++.++++.+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~ 38 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDK 38 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChH
Confidence 5689999999999999999999999999987665
No 82
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.86 E-value=1.3e-09 Score=71.68 Aligned_cols=45 Identities=16% Similarity=0.348 Sum_probs=36.6
Q ss_pred CC-ccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccc
Q psy4924 2 KF-SHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQT 46 (105)
Q Consensus 2 ~~-~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~ 46 (105)
.| ++..+++++ +++|..+.|.||+|||||||+++++.........
T Consensus 10 ~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~ 58 (243)
T 1mv5_A 10 AYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE 58 (243)
T ss_dssp CSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSC
T ss_pred EeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence 56 445677776 8899999999999999999999999887654443
No 83
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.85 E-value=6.1e-10 Score=73.87 Aligned_cols=44 Identities=25% Similarity=0.405 Sum_probs=36.4
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.|++..+++++ ++.|..+.|.||+|||||||+++++..+.....
T Consensus 16 ~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G 62 (257)
T 1g6h_A 16 YFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEG 62 (257)
T ss_dssp EETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred EECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 46666677777 889999999999999999999999988765433
No 84
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.85 E-value=7.8e-10 Score=73.73 Aligned_cols=42 Identities=26% Similarity=0.446 Sum_probs=35.4
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.|++..+++++ ++.|..+.|.||+|||||||+++++..+...
T Consensus 33 ~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~ 77 (263)
T 2olj_A 33 SFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD 77 (263)
T ss_dssp EETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred EECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC
Confidence 46665677777 8899999999999999999999999877644
No 85
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.84 E-value=7.9e-10 Score=73.77 Aligned_cols=44 Identities=23% Similarity=0.394 Sum_probs=36.9
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.|++..+++++ +..|..+.|.||||||||||+++++........
T Consensus 20 ~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G 66 (266)
T 4g1u_C 20 HVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHG 66 (266)
T ss_dssp EETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSC
T ss_pred EeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc
Confidence 46666777777 889999999999999999999999988765443
No 86
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.84 E-value=1.8e-09 Score=67.49 Aligned_cols=29 Identities=28% Similarity=0.380 Sum_probs=26.0
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
+..++.++|+||||+|||||+++++..+.
T Consensus 35 ~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 35 PEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp GGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999999999999883
No 87
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.84 E-value=7.6e-10 Score=72.77 Aligned_cols=45 Identities=22% Similarity=0.321 Sum_probs=36.5
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQT 46 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~ 46 (105)
.|++..+++++ ++.|..+.|.||+|||||||+++++..+......
T Consensus 15 ~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~ 62 (240)
T 1ji0_A 15 YYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGK 62 (240)
T ss_dssp EETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred EECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 46665677766 8889999999999999999999999887654433
No 88
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.83 E-value=4.5e-08 Score=59.93 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=25.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.+..++|+||+|+|||||+++++....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 678899999999999999999999885
No 89
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.83 E-value=3e-08 Score=67.63 Aligned_cols=45 Identities=18% Similarity=0.184 Sum_probs=35.9
Q ss_pred CCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHH
Q psy4924 56 PNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVE 101 (105)
Q Consensus 56 ~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~ 101 (105)
.+..++.+++.+..+.+.+.+|+ ..+.++.|+.+++..++.+..+
T Consensus 163 ~~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~ 207 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSDVVT 207 (354)
T ss_dssp TTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCHHHHHHHHHHHHH
Confidence 34667788888888999899999 6778888889988888877653
No 90
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.83 E-value=1.1e-09 Score=76.02 Aligned_cols=46 Identities=22% Similarity=0.343 Sum_probs=38.4
Q ss_pred CCCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccc
Q psy4924 1 MKFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQT 46 (105)
Q Consensus 1 ~~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~ 46 (105)
|.|++..+.+++ ++.|..+.|.||||||||||+++|+.........
T Consensus 12 ~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~ 60 (359)
T 3fvq_A 12 KSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGE 60 (359)
T ss_dssp EEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEE
T ss_pred EEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcE
Confidence 357777777777 8899999999999999999999999987665443
No 91
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.83 E-value=1e-09 Score=72.94 Aligned_cols=43 Identities=21% Similarity=0.360 Sum_probs=35.6
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
.|++..+++++ +..|..+.|.||+|||||||+++++.......
T Consensus 24 ~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~ 69 (256)
T 1vpl_A 24 RIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSS 69 (256)
T ss_dssp EETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred EECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCc
Confidence 46666677776 88999999999999999999999998775443
No 92
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.82 E-value=9.1e-10 Score=73.94 Aligned_cols=44 Identities=20% Similarity=0.167 Sum_probs=36.3
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.|++..+++++ +..|..+.|.||+|||||||+++++..+.....
T Consensus 30 ~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G 76 (279)
T 2ihy_A 30 MKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSG 76 (279)
T ss_dssp EETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred EECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCe
Confidence 46666677777 888999999999999999999999988765433
No 93
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.82 E-value=3e-09 Score=66.14 Aligned_cols=31 Identities=19% Similarity=0.444 Sum_probs=27.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCccc
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQT 46 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~ 46 (105)
+..++|.|+|||||||+++.++..++.+++.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~ 33 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLA 33 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEE
Confidence 4679999999999999999999999877654
No 94
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.82 E-value=2.1e-09 Score=66.52 Aligned_cols=33 Identities=30% Similarity=0.640 Sum_probs=28.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCccccc
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQ 48 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~ 48 (105)
+..+.|.|||||||||+++.++..++.++++.+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d 36 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD 36 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEecc
Confidence 567999999999999999999999998776543
No 95
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.82 E-value=1.1e-09 Score=71.09 Aligned_cols=43 Identities=35% Similarity=0.475 Sum_probs=35.1
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.|++ .+++++ +..|..+.|.||+|||||||+++++........
T Consensus 19 ~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G 64 (214)
T 1sgw_A 19 GYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKG 64 (214)
T ss_dssp ESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred EeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence 4655 666666 788999999999999999999999987764433
No 96
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.80 E-value=2.2e-09 Score=74.35 Aligned_cols=44 Identities=23% Similarity=0.318 Sum_probs=36.4
Q ss_pred CCC-ccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 1 MKF-SHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 1 ~~~-~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
|.| ++..+.+++ ++.|..+.|.||||||||||+++|+.......
T Consensus 22 ~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~ 69 (355)
T 1z47_A 22 KIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTK 69 (355)
T ss_dssp ECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSE
T ss_pred EEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCc
Confidence 357 666677766 88899999999999999999999998876543
No 97
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.80 E-value=5.2e-08 Score=62.30 Aligned_cols=28 Identities=39% Similarity=0.672 Sum_probs=25.6
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
..+..+.|.||||||||||+++|+..+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4678899999999999999999999876
No 98
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.80 E-value=1.8e-09 Score=75.43 Aligned_cols=46 Identities=26% Similarity=0.401 Sum_probs=38.2
Q ss_pred CCCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccc
Q psy4924 1 MKFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQT 46 (105)
Q Consensus 1 ~~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~ 46 (105)
|.|++..+++++ +..|..+.|.||||||||||+++|+.........
T Consensus 11 ~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~ 59 (381)
T 3rlf_A 11 KAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD 59 (381)
T ss_dssp EEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEE
T ss_pred EEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeE
Confidence 357777777777 8889999999999999999999999887654433
No 99
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.79 E-value=2.1e-09 Score=71.69 Aligned_cols=39 Identities=21% Similarity=0.399 Sum_probs=33.3
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
.|++..+++++ +..|..+.|.||+|||||||+++++...
T Consensus 29 ~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 29 SVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp EETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred EECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46655677776 8899999999999999999999999863
No 100
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.79 E-value=2.2e-09 Score=71.75 Aligned_cols=44 Identities=18% Similarity=0.318 Sum_probs=35.8
Q ss_pred CCcc---ccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 2 KFSH---SKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 2 ~~~~---~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.|++ ..+++++ ++.|..+.|.||+|||||||+++|+..+.....
T Consensus 25 ~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G 74 (271)
T 2ixe_A 25 AYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGG 74 (271)
T ss_dssp CCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred EeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCC
Confidence 4654 4567766 889999999999999999999999988765433
No 101
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.79 E-value=2.3e-09 Score=74.37 Aligned_cols=44 Identities=30% Similarity=0.386 Sum_probs=36.5
Q ss_pred CCCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 1 MKFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 1 ~~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
|.|++..+.+++ ++.|..+.|.||||||||||+++|+.......
T Consensus 11 ~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~ 57 (362)
T 2it1_A 11 KKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTS 57 (362)
T ss_dssp EESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSE
T ss_pred EEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCc
Confidence 357666677777 88899999999999999999999998876543
No 102
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.79 E-value=2e-09 Score=71.13 Aligned_cols=38 Identities=26% Similarity=0.441 Sum_probs=32.9
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
.|++..+++++ +..|..+.|.||+|||||||+++++..
T Consensus 12 ~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 12 SIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46666677776 889999999999999999999999985
No 103
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.79 E-value=1.7e-09 Score=71.37 Aligned_cols=41 Identities=24% Similarity=0.315 Sum_probs=34.3
Q ss_pred cccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 5 HSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 5 ~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
+..+++++ +++|..+.|.||+|||||||+++++..+.....
T Consensus 21 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 64 (247)
T 2ff7_A 21 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64 (247)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 45577776 889999999999999999999999988765433
No 104
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.79 E-value=4.4e-08 Score=66.29 Aligned_cols=27 Identities=33% Similarity=0.509 Sum_probs=24.2
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
..+..++|+||||+|||++|++++...
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 456789999999999999999999865
No 105
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.79 E-value=2.3e-09 Score=70.04 Aligned_cols=44 Identities=25% Similarity=0.342 Sum_probs=35.4
Q ss_pred CCc--cccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 2 KFS--HSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 2 ~~~--~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.|+ +..+++++ ++.|..+.|.||+|||||||+++++..+.....
T Consensus 15 ~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 63 (229)
T 2pze_A 15 FWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 63 (229)
T ss_dssp CSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred EeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCcc
Confidence 453 34577766 889999999999999999999999988765433
No 106
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.78 E-value=1.6e-09 Score=71.77 Aligned_cols=46 Identities=11% Similarity=0.138 Sum_probs=36.8
Q ss_pred CCc-cccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcccc
Q psy4924 2 KFS-HSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTP 47 (105)
Q Consensus 2 ~~~-~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~ 47 (105)
.|+ +..+++++ ++.|..+.|.||+|||||||+++++..+......+
T Consensus 13 ~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I 62 (253)
T 2nq2_C 13 YYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62 (253)
T ss_dssp EETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEE
T ss_pred EeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 455 55667766 88899999999999999999999998876544443
No 107
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.78 E-value=2e-09 Score=72.21 Aligned_cols=43 Identities=23% Similarity=0.337 Sum_probs=35.1
Q ss_pred CCcc-ccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 2 KFSH-SKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 2 ~~~~-~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
.|++ ..+++++ +..|..+.|.||||||||||+++++..+....
T Consensus 16 ~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~ 62 (275)
T 3gfo_A 16 NYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSS 62 (275)
T ss_dssp ECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred EECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCC
Confidence 4654 3477777 88899999999999999999999998776543
No 108
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.78 E-value=2.2e-09 Score=74.43 Aligned_cols=44 Identities=25% Similarity=0.289 Sum_probs=36.3
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.|++..+.+++ ++.|..+.|.||||||||||+++|+........
T Consensus 12 ~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 58 (359)
T 2yyz_A 12 YFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSG 58 (359)
T ss_dssp EETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred EECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCcc
Confidence 56666667766 888999999999999999999999988765433
No 109
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.77 E-value=3.4e-09 Score=66.55 Aligned_cols=31 Identities=29% Similarity=0.512 Sum_probs=26.8
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
+..|..+.|.|||||||||+++.++...+..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g 36 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVP 36 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCC
Confidence 5568899999999999999999999875543
No 110
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.77 E-value=6.5e-08 Score=66.07 Aligned_cols=82 Identities=16% Similarity=0.257 Sum_probs=60.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCcc--------------------------cc----ce-----------------
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQ--------------------------TP----QA----------------- 49 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~~~~--------------------------~~----~~----------------- 49 (105)
..++|+||+|+|||++++++|+.+.+... +. ..
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~~~~ 104 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHA 104 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTTSCC
T ss_pred eeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHhhcc
Confidence 35999999999999999999999876421 00 00
Q ss_pred -------------------------eeeccc-CCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHH
Q psy4924 50 -------------------------IFFKKY-PNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSC 99 (105)
Q Consensus 50 -------------------------~~~~~~-~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~ 99 (105)
..+++. +...++.+++.++.+.+.+.+|+. .+.++.++.++...++.+.
T Consensus 105 ~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~-~~~~~~~~~~~~~~~L~~~ 179 (334)
T 1a5t_A 105 RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCR-LHYLAPPPEQYAVTWLSRE 179 (334)
T ss_dssp TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHH
T ss_pred ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcce-eeeCCCCCHHHHHHHHHHh
Confidence 022322 457778888888889999999986 5677888888877776554
No 111
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.77 E-value=1.8e-09 Score=66.94 Aligned_cols=28 Identities=32% Similarity=0.474 Sum_probs=26.5
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
+.++..+.|.||+|+|||||+++++..+
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 6788899999999999999999999998
No 112
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=98.77 E-value=4.7e-09 Score=65.89 Aligned_cols=35 Identities=34% Similarity=0.548 Sum_probs=30.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
.+..++|.|+|||||||+++.++..++.++++.+.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~ 38 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRLPLLSKDA 38 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHH
Confidence 46789999999999999999999999987765443
No 113
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.77 E-value=3.8e-09 Score=65.76 Aligned_cols=33 Identities=24% Similarity=0.476 Sum_probs=29.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
..++|.|||||||||+++.||..++.++++.+.
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~ 37 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDF 37 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccH
Confidence 368999999999999999999999998877654
No 114
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.76 E-value=2.9e-09 Score=69.87 Aligned_cols=41 Identities=24% Similarity=0.358 Sum_probs=33.9
Q ss_pred CCc--cccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 2 KFS--HSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 2 ~~~--~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
.|+ +..+++++ +++|..+.|.||+|||||||+++++.....
T Consensus 12 ~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 57 (237)
T 2cbz_A 12 TWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK 57 (237)
T ss_dssp ESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEE
T ss_pred EeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 455 34567766 889999999999999999999999987653
No 115
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.76 E-value=6.4e-09 Score=64.58 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=29.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCccccc
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQ 48 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~ 48 (105)
.+..+.|.|||||||||+++.++..++..+++.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d 40 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGD 40 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGG
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCc
Confidence 4678999999999999999999998887766543
No 116
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.76 E-value=6e-09 Score=64.19 Aligned_cols=33 Identities=15% Similarity=0.347 Sum_probs=29.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
..++|.||+||||||+++.++..++.++++.+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~ 34 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSS 34 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcc
Confidence 368999999999999999999999988876654
No 117
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.76 E-value=2.7e-09 Score=74.29 Aligned_cols=44 Identities=23% Similarity=0.334 Sum_probs=36.2
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.|++..+.+++ ++.|..+.|.||||||||||+++|+........
T Consensus 20 ~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 66 (372)
T 1v43_A 20 RFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG 66 (372)
T ss_dssp EETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred EECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCce
Confidence 46665666666 888999999999999999999999988765443
No 118
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.76 E-value=2.5e-09 Score=74.44 Aligned_cols=45 Identities=20% Similarity=0.296 Sum_probs=36.7
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQT 46 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~ 46 (105)
.|++..+.+++ ++.|..+.|.||||||||||+++|+.........
T Consensus 12 ~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~ 59 (372)
T 1g29_1 12 VFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59 (372)
T ss_dssp EETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEE
T ss_pred EECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccE
Confidence 46666677666 8889999999999999999999999887654433
No 119
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.76 E-value=6.8e-09 Score=66.04 Aligned_cols=34 Identities=26% Similarity=0.470 Sum_probs=28.9
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhCCCcccc
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTP 47 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~ 47 (105)
..+..+.|.|||||||||+++.++..++..+++.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~ 60 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEA 60 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcc
Confidence 3577899999999999999999999998766553
No 120
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.75 E-value=5.1e-09 Score=65.51 Aligned_cols=33 Identities=27% Similarity=0.529 Sum_probs=29.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
..++|.|+|||||||+++.|+..++.++++.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~ 35 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDV 35 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCch
Confidence 469999999999999999999999999887665
No 121
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.75 E-value=5.7e-09 Score=65.15 Aligned_cols=35 Identities=34% Similarity=0.485 Sum_probs=30.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
.++.++|.|+|||||||+++.++..++.++++.+.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~ 44 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVGD 44 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHH
Confidence 45679999999999999999999999988877654
No 122
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.74 E-value=7.1e-09 Score=62.99 Aligned_cols=27 Identities=30% Similarity=0.341 Sum_probs=24.4
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
..+..++|+||||||||++|++++...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 456789999999999999999999876
No 123
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.74 E-value=6.2e-09 Score=65.10 Aligned_cols=34 Identities=29% Similarity=0.554 Sum_probs=29.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCccccc
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQ 48 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~ 48 (105)
.+..++|.|+|||||||+++.++..++.++++.+
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d 36 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTG 36 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHH
Confidence 3567999999999999999999999998887654
No 124
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.73 E-value=2.6e-09 Score=70.06 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=32.9
Q ss_pred cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 7 KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 7 ~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.+++++ +..|..+.|.||||||||||+++++........
T Consensus 19 ~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G 60 (235)
T 3tif_A 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60 (235)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred eeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCce
Confidence 366666 889999999999999999999999987765443
No 125
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.73 E-value=2e-09 Score=69.45 Aligned_cols=44 Identities=27% Similarity=0.389 Sum_probs=34.3
Q ss_pred CCCcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccc
Q psy4924 1 MKFSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQT 46 (105)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~ 46 (105)
|.|+...+++++ ..|..+.|.||+|||||||+++++.. ......
T Consensus 8 k~~g~~~~l~~i-~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~ 51 (208)
T 3b85_A 8 KTLGQKHYVDAI-DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQ 51 (208)
T ss_dssp CSHHHHHHHHHH-HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTS
T ss_pred CCHhHHHHHHhc-cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCe
Confidence 456666666664 77889999999999999999999987 533333
No 126
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.73 E-value=6e-09 Score=65.54 Aligned_cols=35 Identities=29% Similarity=0.403 Sum_probs=30.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHH-hCCCccccce
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQK-LSIRLQTPQA 49 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~-~~~~~~~~~~ 49 (105)
.+..++|+|++||||||+++.++.. ++.++++.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~ 44 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGK 44 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHH
Confidence 4678999999999999999999999 7887777553
No 127
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.73 E-value=9.7e-09 Score=65.23 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=30.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
+..++|.|++||||||+++.|+..++..+++.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~ 51 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDA 51 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCc
Confidence 5689999999999999999999999988776554
No 128
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.73 E-value=2.6e-09 Score=73.79 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=35.2
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
.|++. +.+++ ++.|..+.|.||||||||||+++|+.......
T Consensus 10 ~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~ 54 (348)
T 3d31_A 10 KWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDS 54 (348)
T ss_dssp ECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSE
T ss_pred EECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCC
Confidence 56665 77777 88899999999999999999999998776443
No 129
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.71 E-value=3.8e-09 Score=70.41 Aligned_cols=39 Identities=28% Similarity=0.396 Sum_probs=32.7
Q ss_pred cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 7 KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 7 ~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.+++++ +..|..+.|.||+|||||||+++++........
T Consensus 21 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G 62 (266)
T 2yz2_A 21 KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62 (266)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCc
Confidence 466666 889999999999999999999999987764433
No 130
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.71 E-value=1.2e-08 Score=66.34 Aligned_cols=36 Identities=25% Similarity=0.566 Sum_probs=31.4
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccc
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQ 48 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~ 48 (105)
+..++.++|.|||||||+|.++.|++.++.+.+...
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstG 61 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSG 61 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHH
Confidence 455788999999999999999999999998887653
No 131
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.71 E-value=1.1e-08 Score=67.67 Aligned_cols=32 Identities=25% Similarity=0.367 Sum_probs=27.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCccccc
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQ 48 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~ 48 (105)
+.++|.|||||||||+++.||..++.++++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D 33 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALD 33 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEecc
Confidence 36899999999999999999999998776543
No 132
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=98.70 E-value=8.1e-09 Score=64.92 Aligned_cols=35 Identities=23% Similarity=0.503 Sum_probs=30.4
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccc
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQ 48 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~ 48 (105)
..+..++|.|++||||||+++.++..++.++++.+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 45678999999999999999999999998876543
No 133
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=98.69 E-value=1e-08 Score=64.29 Aligned_cols=32 Identities=28% Similarity=0.526 Sum_probs=28.2
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCcccc
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTP 47 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~ 47 (105)
+..++|.|+|||||||+++.++..++.++++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 56799999999999999999999999876654
No 134
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.69 E-value=1.1e-08 Score=63.10 Aligned_cols=34 Identities=24% Similarity=0.382 Sum_probs=30.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
...++|.|++||||||+++.|+..++.++++.+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~ 40 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDM 40 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEEChH
Confidence 3579999999999999999999999999987654
No 135
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.69 E-value=2.5e-09 Score=74.00 Aligned_cols=45 Identities=24% Similarity=0.311 Sum_probs=36.5
Q ss_pred CCcccc--ccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccc
Q psy4924 2 KFSHSK--VKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQT 46 (105)
Q Consensus 2 ~~~~~~--~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~ 46 (105)
.|++.. +.+++ ++.|..+.|.||||||||||+++|+.........
T Consensus 12 ~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~ 61 (353)
T 1oxx_K 12 VFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61 (353)
T ss_dssp EEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEE
T ss_pred EECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceE
Confidence 466555 66666 8889999999999999999999999887654433
No 136
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.69 E-value=8.1e-09 Score=68.61 Aligned_cols=35 Identities=23% Similarity=0.361 Sum_probs=31.0
Q ss_pred cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 7 KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 7 ~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.+++++ +++|..+.|.||+|||||||+++++..+.
T Consensus 34 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 34 RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred ceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 466666 88999999999999999999999998765
No 137
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.68 E-value=1.6e-08 Score=66.19 Aligned_cols=32 Identities=28% Similarity=0.627 Sum_probs=27.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCccc
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQT 46 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~ 46 (105)
.+..+.|.|||||||||+++.|+..++....+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 46789999999999999999999888876543
No 138
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.68 E-value=1.6e-08 Score=66.22 Aligned_cols=40 Identities=15% Similarity=0.272 Sum_probs=27.3
Q ss_pred ccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 4 SHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 4 ~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
++..+++++ +..+..+.|.||+||||||+++.++..++..
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 344456665 6778889999999999999999999988754
No 139
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.68 E-value=1.6e-08 Score=64.19 Aligned_cols=32 Identities=41% Similarity=0.602 Sum_probs=28.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCcccc
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTP 47 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~ 47 (105)
+..++|.|+|||||||+++.|+..++.++++.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 44799999999999999999999999888765
No 140
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.66 E-value=1.8e-08 Score=66.43 Aligned_cols=37 Identities=38% Similarity=0.706 Sum_probs=30.3
Q ss_pred ccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcccc
Q psy4924 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTP 47 (105)
Q Consensus 11 ~~~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~ 47 (105)
.+...+..+.|.||+||||||+++.++..++..+.+.
T Consensus 22 ~m~~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~ 58 (252)
T 4e22_A 22 HMTAIAPVITVDGPSGAGKGTLCKALAESLNWRLLDS 58 (252)
T ss_dssp -CTTTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCC
Confidence 3345677899999999999999999999988766543
No 141
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.66 E-value=1.2e-08 Score=63.80 Aligned_cols=31 Identities=29% Similarity=0.584 Sum_probs=27.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhC-----CCccc
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLS-----IRLQT 46 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~-----~~~~~ 46 (105)
+..++|.|||||||||+++.|+..++ .++++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~ 38 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS 38 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEe
Confidence 46799999999999999999999988 55554
No 142
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.66 E-value=1.5e-08 Score=65.46 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=26.0
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
++..+.++++||||+|||+++.++|+.+..
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 445568999999999999999999999864
No 143
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.66 E-value=1.3e-08 Score=62.81 Aligned_cols=32 Identities=19% Similarity=0.409 Sum_probs=28.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCccccc
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQ 48 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~ 48 (105)
..++|.|++||||||+++.++..++.++++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d 34 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTD 34 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEccc
Confidence 46899999999999999999999998887654
No 144
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.66 E-value=1.8e-08 Score=63.89 Aligned_cols=26 Identities=42% Similarity=0.594 Sum_probs=24.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
..++|+||+|+||||++++++..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 78999999999999999999998854
No 145
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.66 E-value=3.8e-09 Score=64.13 Aligned_cols=34 Identities=15% Similarity=0.241 Sum_probs=28.1
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccc
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQ 48 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~ 48 (105)
..+..++|+||||||||++|++++...+ ++..++
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~ 58 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPA 58 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCS
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEec
Confidence 4567899999999999999999998876 555443
No 146
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=98.66 E-value=1.6e-08 Score=65.21 Aligned_cols=33 Identities=21% Similarity=0.422 Sum_probs=29.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCcccc
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTP 47 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~ 47 (105)
.+..++|.|||||||||+++.|+..++.++++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 36 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISA 36 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 356799999999999999999999999887764
No 147
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.66 E-value=1.1e-08 Score=71.69 Aligned_cols=40 Identities=35% Similarity=0.450 Sum_probs=33.7
Q ss_pred CC--ccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 2 KF--SHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 2 ~~--~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.| ++..+++++ +..|..+.|.||+|||||||+++|+....
T Consensus 28 ~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 28 KYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp ESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred EecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 46 445677777 88999999999999999999999998654
No 148
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.65 E-value=5.9e-09 Score=69.49 Aligned_cols=37 Identities=32% Similarity=0.478 Sum_probs=31.3
Q ss_pred ccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 6 SKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 6 ~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
..+++++ +. |..+.|.||+|||||||+++++... ...
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~ 57 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYS 57 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCE
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCC
Confidence 4566666 88 9999999999999999999999877 443
No 149
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.65 E-value=7.3e-08 Score=65.40 Aligned_cols=81 Identities=5% Similarity=-0.029 Sum_probs=56.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhC------CCccccce----------------------------------------
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLS------IRLQTPQA---------------------------------------- 49 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~------~~~~~~~~---------------------------------------- 49 (105)
...++|+||+|+|||++++++++..+ ..+..++.
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~~ 97 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQ 97 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCHH
Confidence 34799999999999999999998531 12221110
Q ss_pred ------eeeccc-CCEEEEEeeCCCCCCCHHhhcccceEEEeCCCCHHHHHHHHHHH
Q psy4924 50 ------IFFKKY-PNVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSC 99 (105)
Q Consensus 50 ------~~~~~~-~~~~~~~~~n~~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~ 99 (105)
..++++ +...++.+++.+..+.+.+.+| .+.+..++.+++...+.+.
T Consensus 98 a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR---~~~f~~l~~~~i~~~L~~~ 151 (305)
T 2gno_A 98 AANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR---VFRVVVNVPKEFRDLVKEK 151 (305)
T ss_dssp HHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT---SEEEECCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce---eEeCCCCCHHHHHHHHHHH
Confidence 023332 4567777778888899999999 6666777777777766654
No 150
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=98.65 E-value=1.5e-08 Score=63.82 Aligned_cols=33 Identities=21% Similarity=0.545 Sum_probs=29.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCcccc
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTP 47 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~ 47 (105)
.+..++|.|++||||||+++.++..++.++++.
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 467899999999999999999999999887754
No 151
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=98.65 E-value=1.7e-08 Score=64.90 Aligned_cols=32 Identities=22% Similarity=0.444 Sum_probs=28.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCcccc
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTP 47 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~ 47 (105)
+..++|.|+|||||||+++.|+..++.++++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 56799999999999999999999999887765
No 152
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=98.64 E-value=1.2e-08 Score=63.29 Aligned_cols=30 Identities=20% Similarity=0.412 Sum_probs=24.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHH-HhCCCcc
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQ-KLSIRLQ 45 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~-~~~~~~~ 45 (105)
+..++|.|+|||||||+++.++. ..+..++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 35789999999999999999998 4554433
No 153
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.64 E-value=2.2e-08 Score=64.03 Aligned_cols=29 Identities=28% Similarity=0.654 Sum_probs=25.3
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
+..|..+.|.||||||||||+++++..+.
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 66789999999999999999999999874
No 154
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.64 E-value=5.4e-09 Score=71.06 Aligned_cols=44 Identities=16% Similarity=0.356 Sum_probs=35.7
Q ss_pred CCc-cccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 2 KFS-HSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 2 ~~~-~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.|. +..+++++ +++|..+.|+||+|||||||+++|+..+.....
T Consensus 62 ~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G 109 (306)
T 3nh6_A 62 SYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSG 109 (306)
T ss_dssp ESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEE
T ss_pred EcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCc
Confidence 453 34577777 889999999999999999999999988765443
No 155
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.63 E-value=2.3e-08 Score=64.34 Aligned_cols=34 Identities=41% Similarity=0.714 Sum_probs=28.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
+..+.|.||+||||||+++.+++.++.++.+.+.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~ 38 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGA 38 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcc
Confidence 4579999999999999999999999877665443
No 156
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.63 E-value=1.7e-08 Score=65.31 Aligned_cols=33 Identities=15% Similarity=0.397 Sum_probs=28.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCcccc
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTP 47 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~ 47 (105)
.+..++|.|++||||||+++.|+..++.++++.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 456799999999999999999999999877754
No 157
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.63 E-value=2.9e-08 Score=62.82 Aligned_cols=28 Identities=32% Similarity=0.621 Sum_probs=25.0
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
..|..+.|.||+||||||+++.++....
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4578899999999999999999999863
No 158
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=98.62 E-value=2e-08 Score=61.64 Aligned_cols=30 Identities=27% Similarity=0.597 Sum_probs=26.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCcccc
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTP 47 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~ 47 (105)
..++|.|||||||||+++.+ ..++.++++.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 36899999999999999999 8899887764
No 159
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=98.62 E-value=2.4e-08 Score=63.91 Aligned_cols=31 Identities=26% Similarity=0.452 Sum_probs=27.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCccccc
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQ 48 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~ 48 (105)
.++|.|||||||||+++.++..++.++++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d 32 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTG 32 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeHH
Confidence 4789999999999999999999998887653
No 160
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.61 E-value=2.7e-08 Score=61.22 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=28.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
.++|.|++||||||+++.++..++.++++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~ 33 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDE 33 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECcH
Confidence 48999999999999999999999988876543
No 161
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.61 E-value=2.4e-08 Score=63.98 Aligned_cols=31 Identities=26% Similarity=0.418 Sum_probs=27.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCccccc
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQ 48 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~ 48 (105)
.++|.|||||||||+++.++..++.++++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d 32 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTG 32 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHH
Confidence 4789999999999999999999998887663
No 162
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.61 E-value=3.2e-08 Score=62.86 Aligned_cols=29 Identities=31% Similarity=0.381 Sum_probs=26.1
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
...+..+.|.|||||||||+++.++..++
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35678999999999999999999999984
No 163
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.61 E-value=8.7e-09 Score=70.05 Aligned_cols=33 Identities=30% Similarity=0.512 Sum_probs=29.2
Q ss_pred ccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 8 VKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 8 ~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
+++++ +++|..+.|+||+|||||||++.|++.+
T Consensus 115 vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 115 ALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 44444 8889999999999999999999999987
No 164
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=98.61 E-value=2.6e-08 Score=63.20 Aligned_cols=33 Identities=24% Similarity=0.497 Sum_probs=28.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCccccc
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQ 48 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~ 48 (105)
+..++|.|++||||||+++.++..++.++++.+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 457999999999999999999999987766543
No 165
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=98.60 E-value=2.3e-08 Score=62.54 Aligned_cols=33 Identities=24% Similarity=0.499 Sum_probs=29.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCccccc
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQ 48 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~ 48 (105)
+..++|.|++||||||+++.++..++.++++.+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 38 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAG 38 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHH
Confidence 467999999999999999999999998777653
No 166
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.60 E-value=1.5e-08 Score=66.60 Aligned_cols=36 Identities=22% Similarity=0.388 Sum_probs=29.7
Q ss_pred cccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 9 KSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 9 ~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.+++ ++. ..+.|.||+|||||||+++++........
T Consensus 15 l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G 53 (240)
T 2onk_A 15 RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRG 53 (240)
T ss_dssp EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 4555 778 99999999999999999999988765433
No 167
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.60 E-value=3.6e-08 Score=69.38 Aligned_cols=85 Identities=13% Similarity=0.070 Sum_probs=54.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCcccccee------------eecccCCEEEEEeeCCCCCCCHHhh---cccc
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAI------------FFKKYPNVLIFTTSNLTGAIDLAFL---DRAD 79 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~~------------~~~~~~~~~~~~~~n~~~~~d~~~~---~r~~ 79 (105)
.+..++|+|+|||||||+++.++..++..+++.+.+ .+..+ ..+++.+++.....-..++ +..+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~~~~~~~~~~~~l~~g-~~vIiD~~~~~~~~r~~~~~~~~~~~ 335 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQAALRQG-KRVVIDNTNPDVPSRARYIQCAKDAG 335 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGSCSHHHHHHHHHHHHHTT-CCEEEESCCCSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchHHHHHHHHHHHHHHHhcC-CcEEEeCCCCCHHHHHHHHHHHHHcC
Confidence 356799999999999999999999999888877653 12232 3345666654311111111 1122
Q ss_pred ---eEEEeCCCCHHHHHHHHHHHH
Q psy4924 80 ---IKQYIGFPSAAAIFNIFSSCV 100 (105)
Q Consensus 80 ---~~~~~~~~~~~~~~~i~~~~~ 100 (105)
..++++.+.+..+.++..|..
T Consensus 336 ~~~~~v~l~~~~e~l~~R~~~R~~ 359 (416)
T 3zvl_A 336 VPCRCFNFCATIEQARHNNRFREM 359 (416)
T ss_dssp CCEEEEEECCCHHHHHHHHHHHHH
T ss_pred CeEEEEEEeCCHHHHHHHHHhhcc
Confidence 567777776666666666643
No 168
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.60 E-value=2.8e-08 Score=63.28 Aligned_cols=28 Identities=43% Similarity=0.616 Sum_probs=23.2
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.+++.+.|+||||||||||++.++....
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 3578899999999999999999998764
No 169
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.60 E-value=3.6e-08 Score=61.77 Aligned_cols=27 Identities=19% Similarity=0.410 Sum_probs=24.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.++.+.|.||||||||||++.++....
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 367899999999999999999998764
No 170
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=98.59 E-value=3.2e-08 Score=64.94 Aligned_cols=34 Identities=15% Similarity=0.201 Sum_probs=30.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCccccc
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQ 48 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~ 48 (105)
.+..++|.|||||||||+++.|+..++.++++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~ 61 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTG 61 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecH
Confidence 4667999999999999999999999998877654
No 171
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=98.59 E-value=2.6e-08 Score=61.98 Aligned_cols=30 Identities=23% Similarity=0.496 Sum_probs=23.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
+..++|.|+|||||||+++.++..++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 567999999999999999999999998876
No 172
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.58 E-value=3.8e-08 Score=66.78 Aligned_cols=26 Identities=38% Similarity=0.510 Sum_probs=24.2
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
+.+++|+||+|+|||||+++++..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999876
No 173
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.58 E-value=3.6e-08 Score=62.43 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=24.8
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
..|..+.|.||+||||||+++.++..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 457889999999999999999999887
No 174
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.58 E-value=4.5e-08 Score=63.56 Aligned_cols=29 Identities=24% Similarity=0.497 Sum_probs=25.4
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.+.|..+.|.||||||||||+++++....
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 56789999999999999999999999875
No 175
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.58 E-value=3.6e-08 Score=63.69 Aligned_cols=28 Identities=25% Similarity=0.478 Sum_probs=24.8
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
+++|..+.|+||+|||||||+++|+...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 6778999999999999999999999977
No 176
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=98.57 E-value=3.2e-08 Score=63.67 Aligned_cols=32 Identities=22% Similarity=0.556 Sum_probs=28.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCcccc
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTP 47 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~ 47 (105)
+..++|.|+|||||||+++.|+..++.++++.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 45699999999999999999999999888765
No 177
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=98.57 E-value=3.9e-08 Score=63.92 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=29.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCccccc
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQ 48 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~ 48 (105)
.+..++|.|++||||||+++.|+..++.++++.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d 48 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATG 48 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHH
Confidence 3467999999999999999999999998887653
No 178
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=98.57 E-value=3.4e-08 Score=63.59 Aligned_cols=31 Identities=26% Similarity=0.522 Sum_probs=27.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCccccc
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQ 48 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~ 48 (105)
.++|.|||||||+|.|+.||+.++.+++...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istG 32 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTG 32 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcHH
Confidence 4789999999999999999999999887643
No 179
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.57 E-value=4.6e-08 Score=62.32 Aligned_cols=29 Identities=28% Similarity=0.503 Sum_probs=26.1
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
+..+..++|.|||||||||+++.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45688999999999999999999999874
No 180
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.56 E-value=4.9e-08 Score=62.52 Aligned_cols=29 Identities=28% Similarity=0.487 Sum_probs=25.9
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
..|+.+.|.||+||||||+++.|+..+..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 46788999999999999999999998753
No 181
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.55 E-value=6.1e-08 Score=60.40 Aligned_cols=33 Identities=33% Similarity=0.380 Sum_probs=27.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHh---CCCcccc
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKL---SIRLQTP 47 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~---~~~~~~~ 47 (105)
.+..+.|.|++||||||+++.++..+ +.+++.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~ 39 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL 39 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEE
Confidence 46789999999999999999999987 7665533
No 182
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.55 E-value=3.6e-08 Score=62.85 Aligned_cols=28 Identities=32% Similarity=0.434 Sum_probs=25.0
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
..+..+.|.||+||||||+++.++..++
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567899999999999999999999877
No 183
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.55 E-value=5.2e-08 Score=61.32 Aligned_cols=25 Identities=36% Similarity=0.767 Sum_probs=22.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
.+.|.||||||||||+++++..++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5789999999999999999999873
No 184
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.54 E-value=5.5e-08 Score=65.40 Aligned_cols=26 Identities=42% Similarity=0.586 Sum_probs=23.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
.+..++|.|||||||||+++.++..+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 36689999999999999999999988
No 185
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.54 E-value=5.3e-08 Score=61.92 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=28.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCcccc
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTP 47 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~ 47 (105)
.+..++|.|++||||||+++.++..++.+.++.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 467899999999999999999999887665443
No 186
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.54 E-value=4.9e-08 Score=61.42 Aligned_cols=26 Identities=35% Similarity=0.692 Sum_probs=23.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
++.+.|.||+||||||++++++..+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46789999999999999999998875
No 187
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.54 E-value=2.7e-08 Score=69.11 Aligned_cols=38 Identities=18% Similarity=0.269 Sum_probs=32.3
Q ss_pred cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 7 KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 7 ~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
.+++++ ++.|..+.|.||||||||||+++++.......
T Consensus 42 ~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~ 82 (366)
T 3tui_C 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTE 82 (366)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSE
T ss_pred EEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCc
Confidence 366666 88999999999999999999999998776543
No 188
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.53 E-value=4.3e-08 Score=62.20 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=25.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCccccc
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQ 48 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~ 48 (105)
.+.|.|++||||||+++.++. ++.++++.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 589999999999999999999 777665433
No 189
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.53 E-value=5e-08 Score=60.77 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=20.9
Q ss_pred ccCCceEEEEcCCCCCHHHHHHH
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKA 35 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~ 35 (105)
++.|..+.|+||||||||||+++
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHH
Confidence 56789999999999999999993
No 190
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.53 E-value=3e-08 Score=65.55 Aligned_cols=31 Identities=29% Similarity=0.438 Sum_probs=28.1
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
+..|..+.|.||+|||||||+++++..+...
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~ 53 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGMTSGK 53 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCE
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 7789999999999999999999999887654
No 191
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.52 E-value=5.5e-08 Score=63.10 Aligned_cols=26 Identities=35% Similarity=0.461 Sum_probs=24.1
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHH
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQ 38 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~ 38 (105)
++.|..+.|.||||||||||+++++.
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 67899999999999999999999983
No 192
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.52 E-value=3.9e-08 Score=62.61 Aligned_cols=35 Identities=23% Similarity=0.310 Sum_probs=28.3
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHh-CCCcccc
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKL-SIRLQTP 47 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~-~~~~~~~ 47 (105)
+..+..+.|.|++||||||+++.++..+ +..+++.
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~ 53 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQ 53 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeC
Confidence 4457789999999999999999999987 5544433
No 193
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=98.52 E-value=5.7e-08 Score=62.28 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=27.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCcccc
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTP 47 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~~~~~ 47 (105)
.++|.|+|||||||+++.|+..++.++++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 489999999999999999999999887765
No 194
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.52 E-value=7.2e-08 Score=61.82 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=26.8
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
++.+..+.|.||||||||||++.++.....
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~~~ 51 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMVQL 51 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 677899999999999999999999986544
No 195
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.52 E-value=5.2e-08 Score=61.93 Aligned_cols=31 Identities=29% Similarity=0.464 Sum_probs=26.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCccccc
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQ 48 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~ 48 (105)
..+.|.||+||||||+++.++. ++.++++.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d 33 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDAD 33 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccchH
Confidence 4689999999999999999998 787776543
No 196
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.51 E-value=5.7e-08 Score=70.88 Aligned_cols=45 Identities=18% Similarity=0.353 Sum_probs=36.4
Q ss_pred CCcc--ccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccc
Q psy4924 2 KFSH--SKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQT 46 (105)
Q Consensus 2 ~~~~--~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~ 46 (105)
.|++ ..+.+++ +++|..+.|+||+|||||||++.+++........
T Consensus 350 ~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~ 399 (582)
T 3b5x_A 350 TYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGS 399 (582)
T ss_pred EcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCE
Confidence 4653 4577777 8899999999999999999999999987654433
No 197
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.51 E-value=5.8e-08 Score=63.93 Aligned_cols=29 Identities=24% Similarity=0.387 Sum_probs=25.7
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
..+..++|.|||||||||+++.++..++.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~ 58 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQG 58 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 34678999999999999999999999874
No 198
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.51 E-value=2.8e-08 Score=67.08 Aligned_cols=36 Identities=31% Similarity=0.448 Sum_probs=30.4
Q ss_pred cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 7 KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 7 ~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
.+++++ ++.|..+.|.||+|||||||+++++.....
T Consensus 52 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p 90 (290)
T 2bbs_A 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP 90 (290)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCE
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 455555 788999999999999999999999987653
No 199
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.51 E-value=6.2e-08 Score=61.66 Aligned_cols=32 Identities=16% Similarity=0.305 Sum_probs=27.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCccc
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQT 46 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~ 46 (105)
.+..++|.|++||||||+++.|+..++...++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~ 39 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHR 39 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCc
Confidence 46789999999999999999999987654433
No 200
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.51 E-value=2.3e-07 Score=77.68 Aligned_cols=47 Identities=21% Similarity=0.374 Sum_probs=38.7
Q ss_pred CCEEEEEeeCCC-----CCCCHHhhcccceEEEeCCCCHHHHHHHHHHHHHHh
Q psy4924 56 PNVLIFTTSNLT-----GAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEEL 103 (105)
Q Consensus 56 ~~~~~~~~~n~~-----~~~d~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~~l 103 (105)
..+.+++|.|.+ ..+++++++||.+ +.+++|+.+.+..|+...+..+
T Consensus 1421 ~d~~~vaamnPp~~gGr~~l~~Rf~r~F~v-i~i~~ps~esL~~If~til~~~ 1472 (3245)
T 3vkg_A 1421 DKIQFVGACNPPTDAGRVQLTHRFLRHAPI-LLVDFPSTSSLTQIYGTFNRAL 1472 (3245)
T ss_dssp SSEEEEEEECCTTSTTCCCCCHHHHTTCCE-EECCCCCHHHHHHHHHHHHHHH
T ss_pred cCeEEEEEcCCCCCCCCccCCHHHHhhceE-EEeCCCCHHHHHHHHHHHHHHH
Confidence 456788999887 4689999999986 7899999999999988766543
No 201
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.50 E-value=1.1e-07 Score=60.26 Aligned_cols=28 Identities=18% Similarity=0.412 Sum_probs=25.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
+..++|.|++||||||+++.|+..++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 5679999999999999999999988764
No 202
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.49 E-value=7.4e-08 Score=60.78 Aligned_cols=33 Identities=12% Similarity=0.208 Sum_probs=28.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCccccc
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQ 48 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~ 48 (105)
.+..+.|.|++||||||+++.|++. +.++++.+
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 3567999999999999999999998 87776544
No 203
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.49 E-value=8e-08 Score=60.30 Aligned_cols=26 Identities=35% Similarity=0.848 Sum_probs=22.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
+..+.|.|||||||||+++.++...+
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~ 27 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLD 27 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccC
Confidence 45789999999999999999998654
No 204
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=98.49 E-value=8e-08 Score=60.74 Aligned_cols=30 Identities=17% Similarity=0.459 Sum_probs=25.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHh-CCCc
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKL-SIRL 44 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~-~~~~ 44 (105)
.+..++|.|++||||||+++.++..+ +.++
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~ 33 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTI 33 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCce
Confidence 46789999999999999999999988 3433
No 205
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.48 E-value=1.1e-07 Score=59.95 Aligned_cols=28 Identities=21% Similarity=0.519 Sum_probs=24.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.++|.|++||||||+++.|++.++.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 4899999999999999999999886544
No 206
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.48 E-value=8.8e-08 Score=69.45 Aligned_cols=44 Identities=30% Similarity=0.378 Sum_probs=34.4
Q ss_pred CCccc-cccccc--ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 2 KFSHS-KVKSNI--ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 2 ~~~~~-~~~~~~--~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.|++. .+..++ +.+|..+.|.||||||||||+++|+..+.....
T Consensus 30 ~yg~~~~~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G 76 (538)
T 1yqt_A 30 RYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLC 76 (538)
T ss_dssp ECSTTCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTT
T ss_pred EECCccccccCcCcCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 46554 255555 688999999999999999999999987754433
No 207
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.48 E-value=7e-07 Score=74.12 Aligned_cols=82 Identities=21% Similarity=0.180 Sum_probs=64.4
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce--------------------------------------------
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA-------------------------------------------- 49 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~-------------------------------------------- 49 (105)
..+.+.++.||+|+|||++++.+|+.+|.+++....
T Consensus 643 ~~~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~lg~~~~g~~~~Gaw~~~DE~nr~~~evLs~l~~~l~ 722 (2695)
T 4akg_A 643 HQKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEFNRLDEKVLSAVSANIQ 722 (2695)
T ss_dssp HTTCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHHHHHHHHHHHHTCEEEEETTTSSCHHHHHHHHHHHH
T ss_pred HhCCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHhhHHHHHHHhcCCEeeehhhhhcChHHHHHHHHHHH
Confidence 346789999999999999999999999998876543
Q ss_pred -----------------eeecccCCEEEEEeeCC----CCCCCHHhhcccceEEEeCCCCHHHHHHHH
Q psy4924 50 -----------------IFFKKYPNVLIFTTSNL----TGAIDLAFLDRADIKQYIGFPSAAAIFNIF 96 (105)
Q Consensus 50 -----------------~~~~~~~~~~~~~~~n~----~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~ 96 (105)
..+...+...++.|.|. ...++.++.+|| +.+.+.+|+.+...+++
T Consensus 723 ~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~F-r~v~m~~Pd~~~i~ei~ 789 (2695)
T 4akg_A 723 QIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSF-REFSMKSPQSGTIAEMI 789 (2695)
T ss_dssp HHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTE-EEEECCCCCHHHHHHHH
T ss_pred HHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhhe-EEEEeeCCCHHHHHHHH
Confidence 02344456678888884 357888888888 56889999988776664
No 208
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.48 E-value=1.2e-07 Score=63.05 Aligned_cols=30 Identities=20% Similarity=0.404 Sum_probs=27.1
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
+.++..++|.||+||||||++++++..+..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence 677889999999999999999999998753
No 209
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=98.48 E-value=9.4e-08 Score=60.52 Aligned_cols=32 Identities=28% Similarity=0.551 Sum_probs=29.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
.+.|.|++||||||+++.++..++.++++.+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~ 35 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGL 35 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccch
Confidence 78999999999999999999999988877554
No 210
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.48 E-value=1.3e-06 Score=59.79 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=23.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
..+.|.||+||||||++++++..++
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3799999999999999999999876
No 211
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.48 E-value=6.1e-08 Score=70.73 Aligned_cols=44 Identities=23% Similarity=0.363 Sum_probs=36.2
Q ss_pred CCcc--ccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 2 KFSH--SKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 2 ~~~~--~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.|++ ..+++++ +++|..+.|.||+|||||||++.+++.......
T Consensus 350 ~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G 398 (582)
T 3b60_A 350 TYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEG 398 (582)
T ss_dssp CSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEE
T ss_pred EcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCC
Confidence 5653 4577777 889999999999999999999999988765443
No 212
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=98.47 E-value=9.4e-08 Score=61.81 Aligned_cols=30 Identities=30% Similarity=0.481 Sum_probs=26.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCcccc
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTP 47 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~~~~~ 47 (105)
.++|.|||||||||+++.|+..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 489999999999999999999998877655
No 213
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.46 E-value=9.5e-08 Score=59.67 Aligned_cols=25 Identities=28% Similarity=0.592 Sum_probs=23.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
..++|.|+|||||||+++.|+..++
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999887
No 214
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.46 E-value=8.6e-08 Score=65.62 Aligned_cols=33 Identities=33% Similarity=0.515 Sum_probs=28.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCccccc
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQ 48 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~ 48 (105)
++.++|+||+||||||+++.+|..++..+++.+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~D 37 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVD 37 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEecc
Confidence 457999999999999999999999997776654
No 215
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=98.45 E-value=1.4e-07 Score=58.97 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=25.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHh---CCCcccc
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKL---SIRLQTP 47 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~---~~~~~~~ 47 (105)
.+.|.|++||||||+++.++..+ +.++++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~ 34 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLY 34 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 47899999999999999999988 7666553
No 216
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=98.45 E-value=1.2e-07 Score=60.86 Aligned_cols=31 Identities=32% Similarity=0.523 Sum_probs=26.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCcccc
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTP 47 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~ 47 (105)
+..+.|.|++||||||+++.++. ++.++++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 46799999999999999999998 78776554
No 217
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.45 E-value=1.2e-07 Score=62.27 Aligned_cols=34 Identities=38% Similarity=0.610 Sum_probs=29.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
+..+.|.||+||||||+++.++..++.++++.+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~ 42 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGA 42 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCc
Confidence 4579999999999999999999999988766543
No 218
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=98.45 E-value=1.3e-07 Score=61.55 Aligned_cols=36 Identities=19% Similarity=0.384 Sum_probs=30.9
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
..+..+.|.|++||||||+++.++..++.++++.+.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~ 49 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGA 49 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCC
Confidence 346789999999999999999999999988776544
No 219
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.45 E-value=1.4e-07 Score=60.41 Aligned_cols=28 Identities=36% Similarity=0.418 Sum_probs=25.1
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
++.|..++|+||||+|||||++.++...
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5678899999999999999999999665
No 220
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=98.44 E-value=1.1e-07 Score=60.50 Aligned_cols=34 Identities=24% Similarity=0.461 Sum_probs=29.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
...+.|.|++||||||+++.++..++.++++.+.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~ 45 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDR 45 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcH
Confidence 3568999999999999999999998998887654
No 221
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.44 E-value=1.6e-07 Score=65.50 Aligned_cols=33 Identities=30% Similarity=0.378 Sum_probs=29.1
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
+++++.++|+|||||||||++++++...+....
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~ 198 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELCGGKAL 198 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEE
Confidence 677889999999999999999999998876543
No 222
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.44 E-value=1.8e-07 Score=62.46 Aligned_cols=27 Identities=33% Similarity=0.598 Sum_probs=23.6
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
++.++++|+||||+|||++++++|+..
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 334589999999999999999999874
No 223
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.44 E-value=9.6e-08 Score=69.92 Aligned_cols=45 Identities=24% Similarity=0.420 Sum_probs=36.7
Q ss_pred CCCcc-ccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 1 MKFSH-SKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 1 ~~~~~-~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
+.|++ ..+++++ +++|..+.|+||+|||||||++.+++......+
T Consensus 362 ~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G 410 (598)
T 3qf4_B 362 FSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRG 410 (598)
T ss_dssp CCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEE
T ss_pred EECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCe
Confidence 35643 4577777 889999999999999999999999988776543
No 224
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=98.44 E-value=1.8e-07 Score=61.86 Aligned_cols=31 Identities=29% Similarity=0.464 Sum_probs=26.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHH---hCCCcc
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQK---LSIRLQ 45 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~---~~~~~~ 45 (105)
.+..++|.|+|||||||+++.++.. .+.+++
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i 36 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVI 36 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 3567999999999999999999998 666655
No 225
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.43 E-value=7.5e-08 Score=62.37 Aligned_cols=28 Identities=25% Similarity=0.464 Sum_probs=19.4
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHH-HHh
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVA-QKL 40 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la-~~~ 40 (105)
+..|..+.|.||+||||||+++.++ ...
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC---
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 5678899999999999999999999 765
No 226
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.42 E-value=1e-07 Score=65.64 Aligned_cols=33 Identities=24% Similarity=0.531 Sum_probs=28.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCccccc
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQ 48 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~ 48 (105)
++.++|.||+|||||+|+..||+.++..+++.+
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~D 72 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSD 72 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEccc
Confidence 457999999999999999999999997665543
No 227
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.41 E-value=2.1e-07 Score=59.58 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=24.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.++.++|.||+|+|||||++.|++...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 578899999999999999999998865
No 228
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.41 E-value=9e-08 Score=70.10 Aligned_cols=32 Identities=44% Similarity=0.576 Sum_probs=28.4
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
+..+..++|+|||||||||++++++..+....
T Consensus 57 i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 88 (604)
T 3k1j_A 57 ANQKRHVLLIGEPGTGKSMLGQAMAELLPTET 88 (604)
T ss_dssp HHTTCCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred ccCCCEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence 56688999999999999999999999987554
No 229
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.40 E-value=2.3e-07 Score=63.11 Aligned_cols=30 Identities=13% Similarity=0.186 Sum_probs=26.5
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
+..+..+.|.||+|||||||++.|+..+..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 456888999999999999999999998753
No 230
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.40 E-value=2e-07 Score=59.18 Aligned_cols=26 Identities=35% Similarity=0.632 Sum_probs=23.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
+.|+|+||+|+|||||++.|......
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~ 27 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 67999999999999999999887653
No 231
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.40 E-value=1.5e-07 Score=66.43 Aligned_cols=31 Identities=29% Similarity=0.419 Sum_probs=26.9
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
.++..++|.||+||||||++++++..++...
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~ 195 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSE 195 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTT
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCC
Confidence 4567899999999999999999999987543
No 232
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.40 E-value=2.2e-07 Score=58.17 Aligned_cols=28 Identities=39% Similarity=0.548 Sum_probs=25.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
.+..++|.|++||||||+++.++..++.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4678999999999999999999998863
No 233
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.39 E-value=2.3e-07 Score=58.96 Aligned_cols=26 Identities=46% Similarity=0.796 Sum_probs=23.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
|..+.|+||+|+||||+++.++..+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc
Confidence 45789999999999999999999873
No 234
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.39 E-value=6.3e-08 Score=67.01 Aligned_cols=31 Identities=35% Similarity=0.680 Sum_probs=28.1
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
+.++..++|.||+||||||++++++......
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~ 202 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMKALMQEIPFD 202 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHHHHHTTSCTT
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 6789999999999999999999999987653
No 235
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.39 E-value=2.8e-07 Score=62.49 Aligned_cols=29 Identities=28% Similarity=0.417 Sum_probs=26.3
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
+..+..+.|+||+||||||+++.+|..+.
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 55688999999999999999999999875
No 236
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.38 E-value=8.9e-08 Score=70.02 Aligned_cols=39 Identities=21% Similarity=0.318 Sum_probs=33.3
Q ss_pred cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 7 KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 7 ~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.+++++ +++|..+.|+||+|||||||++.+++.......
T Consensus 358 ~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G 399 (595)
T 2yl4_A 358 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASG 399 (595)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEE
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCc
Confidence 477777 889999999999999999999999988765443
No 237
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.38 E-value=1.8e-07 Score=68.77 Aligned_cols=44 Identities=32% Similarity=0.400 Sum_probs=34.1
Q ss_pred CCcccc-ccccc--ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 2 KFSHSK-VKSNI--ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 2 ~~~~~~-~~~~~--~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.|++.. ++.++ +..|..+.|.||||||||||+++|+..+.....
T Consensus 100 ~yg~~~~~l~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G 146 (607)
T 3bk7_A 100 RYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLC 146 (607)
T ss_dssp ECSTTCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTT
T ss_pred EECCCCeeeCCCCCCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCC
Confidence 455542 45555 678999999999999999999999988765433
No 238
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.37 E-value=2.8e-07 Score=58.98 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=25.9
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
...+..++|.|++||||||+++.++..++
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45678899999999999999999999876
No 239
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.37 E-value=9.7e-08 Score=69.81 Aligned_cols=40 Identities=20% Similarity=0.332 Sum_probs=34.1
Q ss_pred ccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 6 SKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 6 ~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
..+++++ +++|..+.|+||+|||||||++.+++.......
T Consensus 356 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G 398 (587)
T 3qf4_A 356 DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERG 398 (587)
T ss_dssp CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEE
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCc
Confidence 4577777 889999999999999999999999988765443
No 240
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.37 E-value=3.3e-07 Score=62.17 Aligned_cols=29 Identities=31% Similarity=0.349 Sum_probs=25.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.+..+.|+||+||||||+++.+|..+...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46789999999999999999999988643
No 241
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.37 E-value=2.4e-07 Score=65.75 Aligned_cols=38 Identities=16% Similarity=0.210 Sum_probs=31.4
Q ss_pred ccccccc--ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 6 SKVKSNI--ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 6 ~~~~~~~--~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
..+.+++ +..|..+.|.||+|||||||++.|++.....
T Consensus 145 ~~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 145 VRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp CHHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred ceEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 3455555 6778899999999999999999999987643
No 242
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.36 E-value=3.3e-07 Score=58.38 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=24.4
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHH
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQ 38 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~ 38 (105)
++.+..++|+||||+|||||++.++.
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 66789999999999999999999998
No 243
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=98.36 E-value=2.9e-07 Score=60.44 Aligned_cols=28 Identities=25% Similarity=0.450 Sum_probs=25.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
...|.|.|++||||||+++.|+..++.+
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 4469999999999999999999998876
No 244
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.35 E-value=8.9e-08 Score=69.82 Aligned_cols=45 Identities=18% Similarity=0.347 Sum_probs=36.2
Q ss_pred CCcc--ccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccc
Q psy4924 2 KFSH--SKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQT 46 (105)
Q Consensus 2 ~~~~--~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~ 46 (105)
.|++ ..+++++ +++|..+.|+||+|||||||++.+++........
T Consensus 348 ~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~ 397 (578)
T 4a82_A 348 QYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ 397 (578)
T ss_dssp CSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEE
T ss_pred EcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcE
Confidence 4543 3477776 8899999999999999999999999887765443
No 245
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.35 E-value=3.2e-07 Score=57.57 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=24.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHh---CCCcc
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKL---SIRLQ 45 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~---~~~~~ 45 (105)
.+.|.|++||||||+++.++..+ +.++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~ 32 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 47899999999999999999998 76655
No 246
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.34 E-value=3.1e-07 Score=59.33 Aligned_cols=28 Identities=29% Similarity=0.442 Sum_probs=25.5
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
++.+..+.|+||||+|||||++.++...
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 6678999999999999999999999853
No 247
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=98.34 E-value=2.4e-07 Score=62.03 Aligned_cols=29 Identities=24% Similarity=0.437 Sum_probs=24.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh-CCCcc
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKL-SIRLQ 45 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~-~~~~~ 45 (105)
..++|.|+|||||||+++.++..+ +..++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 578999999999999999999864 55444
No 248
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=98.34 E-value=2.8e-07 Score=58.98 Aligned_cols=34 Identities=32% Similarity=0.483 Sum_probs=29.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
+..+.|.|++||||||+++.++..++.++++.+.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~ 36 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGA 36 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecCCh
Confidence 3569999999999999999999999988877654
No 249
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.34 E-value=2.5e-07 Score=64.07 Aligned_cols=30 Identities=30% Similarity=0.400 Sum_probs=26.0
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
..++..+++.||+||||||++++++..++.
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhcccC
Confidence 445668999999999999999999988764
No 250
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.34 E-value=3.1e-07 Score=67.50 Aligned_cols=35 Identities=29% Similarity=0.219 Sum_probs=30.2
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcccc
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTP 47 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~ 47 (105)
+.+|..+.|.||||+|||||+++|+..+......+
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i 134 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence 66799999999999999999999999887655543
No 251
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.33 E-value=1.9e-07 Score=71.74 Aligned_cols=37 Identities=24% Similarity=0.446 Sum_probs=31.7
Q ss_pred CCccccccccc---ccCCceEEEEcCCCCCHHHHHHHHHH
Q psy4924 2 KFSHSKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQ 38 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~ 38 (105)
.|++..+++++ +..|..+.|.||+|||||||+++|+.
T Consensus 444 ~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 444 AYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred EECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 46666667766 88899999999999999999999994
No 252
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.33 E-value=2.2e-07 Score=64.10 Aligned_cols=37 Identities=14% Similarity=0.233 Sum_probs=30.7
Q ss_pred cccccc--ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 7 KVKSNI--ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 7 ~~~~~~--~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.+.+++ +..|..+.|.||+|+|||||+++|++.....
T Consensus 60 ~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 60 RAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred EEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 344444 6678999999999999999999999998643
No 253
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=98.32 E-value=5.6e-07 Score=57.85 Aligned_cols=40 Identities=23% Similarity=0.306 Sum_probs=32.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCccccceeeeccc
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKY 55 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~~~~~~~ 55 (105)
.++.++|.||+|+|||+++..++.... +++..+...+...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~v~~~ 72 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADDRVDVYQQ 72 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEEEEEC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhheeec
Confidence 477899999999999999999998877 6666666544433
No 254
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.32 E-value=4.2e-07 Score=60.82 Aligned_cols=29 Identities=17% Similarity=0.342 Sum_probs=26.7
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
+..|..++|.||||+|||||++.++....
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 77899999999999999999999998775
No 255
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.32 E-value=4.8e-07 Score=62.72 Aligned_cols=29 Identities=28% Similarity=0.417 Sum_probs=26.3
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
+..+..+.|+||+||||||+++.+|..+.
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 45688999999999999999999999875
No 256
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.32 E-value=2.7e-07 Score=65.27 Aligned_cols=37 Identities=22% Similarity=0.330 Sum_probs=27.4
Q ss_pred CCccccccccc---ccCCce--EEEEcCCCCCHHHHHHHHHHH
Q psy4924 2 KFSHSKVKSNI---ISWNRV--VLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 2 ~~~~~~~~~~~---~~~~~~--ill~Gp~GsGKT~l~~~la~~ 39 (105)
.|++.. .+++ +..|.. +.|+||||+|||||+++|+..
T Consensus 24 ~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 24 GFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp -CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred EECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 455444 4444 778888 999999999999999999876
No 257
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.31 E-value=8e-07 Score=57.86 Aligned_cols=30 Identities=27% Similarity=0.501 Sum_probs=26.8
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
...+..+.|.||+||||||+++.++..++.
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 346788999999999999999999999874
No 258
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=98.30 E-value=3.9e-07 Score=62.09 Aligned_cols=33 Identities=27% Similarity=0.536 Sum_probs=28.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCccccc
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQ 48 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~ 48 (105)
++.++|.||+|||||+|+..+|..++..++..+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~D 42 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVD 42 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecc
Confidence 467899999999999999999999987665543
No 259
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=98.30 E-value=3.8e-07 Score=61.04 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=26.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCcccc
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTP 47 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~ 47 (105)
+..|.|.|++||||||+++.++ .++.++++.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 4569999999999999999999 578776654
No 260
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.30 E-value=3.4e-07 Score=63.07 Aligned_cols=32 Identities=28% Similarity=0.481 Sum_probs=27.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCccccc
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQ 48 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~ 48 (105)
..++|.||+||||||+++.||..++..+++.+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 57999999999999999999999986544433
No 261
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.30 E-value=5.8e-07 Score=57.14 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=24.2
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
..+..+.|.||+||||||+++.++..+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999876
No 262
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.29 E-value=3.7e-07 Score=66.23 Aligned_cols=45 Identities=20% Similarity=0.295 Sum_probs=34.0
Q ss_pred CCcccccc-ccc--ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccc
Q psy4924 2 KFSHSKVK-SNI--ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQT 46 (105)
Q Consensus 2 ~~~~~~~~-~~~--~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~ 46 (105)
+|+.+.+. ..+ ..+|..+.|.||||||||||+++|+..+......
T Consensus 8 ~~~~~~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~ 55 (538)
T 3ozx_A 8 RYKVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGD 55 (538)
T ss_dssp ESSTTSCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTC
T ss_pred ecCCCceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Confidence 46665532 233 5578899999999999999999999987655443
No 263
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.29 E-value=5.6e-07 Score=62.55 Aligned_cols=30 Identities=20% Similarity=0.404 Sum_probs=26.8
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
+.++..++|+||+||||||++++++..+..
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 567888999999999999999999998754
No 264
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=98.28 E-value=4e-07 Score=62.20 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=28.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCccccc
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQ 48 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~ 48 (105)
++.++|.||+|||||+|+..+|..++..+++.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~D 35 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGD 35 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECC
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecC
Confidence 457899999999999999999999987655444
No 265
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.28 E-value=7.1e-07 Score=55.54 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=23.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
...+|+||+||||||++++|+..++.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 37899999999999999999998765
No 266
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.28 E-value=5e-07 Score=60.08 Aligned_cols=29 Identities=28% Similarity=0.393 Sum_probs=25.8
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
++.+..++|+||||||||||+..++..+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 66789999999999999999999987653
No 267
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.28 E-value=6.2e-07 Score=60.71 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=25.4
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
..+..+.|.||+||||||+++.|+..++
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5577899999999999999999999876
No 268
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.28 E-value=6.6e-07 Score=61.32 Aligned_cols=29 Identities=28% Similarity=0.307 Sum_probs=25.7
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
..+..+.|.||+||||||+++.++..+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45788999999999999999999988753
No 269
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.27 E-value=5.8e-07 Score=61.60 Aligned_cols=29 Identities=28% Similarity=0.407 Sum_probs=24.8
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
++.+..++|+||||+|||+|+..++...+
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~~G 148 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEALG 148 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhCC
Confidence 45567789999999999999999998744
No 270
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.27 E-value=4.9e-07 Score=62.40 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=28.0
Q ss_pred ccC--CceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 13 ISW--NRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 13 ~~~--~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
+.. +..+.|+||+|||||||++.|+..+....
T Consensus 165 v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 165 ARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp TGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred HHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 455 78999999999999999999999987654
No 271
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.24 E-value=2.5e-07 Score=63.54 Aligned_cols=28 Identities=29% Similarity=0.379 Sum_probs=25.3
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
+..+..+.|.||||+|||||+++++..+
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 5678899999999999999999999765
No 272
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=98.24 E-value=4.1e-07 Score=63.03 Aligned_cols=32 Identities=31% Similarity=0.561 Sum_probs=27.9
Q ss_pred ccCCce--EEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 13 ISWNRV--VLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 13 ~~~~~~--ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
+..+.. ++|+||+|+||||+++++|..++.++
T Consensus 19 i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 19 IEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp TTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred hccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 344444 99999999999999999999999887
No 273
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.24 E-value=6e-07 Score=64.05 Aligned_cols=29 Identities=28% Similarity=0.226 Sum_probs=26.3
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
+..|..+.|.||+|||||||+++|+....
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCccc
Confidence 56789999999999999999999998763
No 274
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.23 E-value=8.9e-07 Score=63.74 Aligned_cols=30 Identities=27% Similarity=0.303 Sum_probs=26.6
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
+..+..++|+||+||||||++++|+..+..
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhh
Confidence 556889999999999999999999988753
No 275
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.23 E-value=7.8e-07 Score=57.46 Aligned_cols=28 Identities=43% Similarity=0.519 Sum_probs=24.5
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
++.+..++|+||||+|||||+..++...
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 6778999999999999999988877654
No 276
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.23 E-value=3.1e-07 Score=62.87 Aligned_cols=31 Identities=26% Similarity=0.468 Sum_probs=27.8
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
+.++..++|.||+|||||||+++++......
T Consensus 168 i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~ 198 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE 198 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHHHHGGGGSCTT
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCcCC
Confidence 6678899999999999999999999987654
No 277
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=98.21 E-value=1.2e-06 Score=56.07 Aligned_cols=30 Identities=20% Similarity=0.327 Sum_probs=28.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCccc
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQT 46 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~~~~~ 46 (105)
..|.|.||+||||||+++.+|..++.++++
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 479999999999999999999999999998
No 278
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.20 E-value=9.5e-07 Score=58.93 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=22.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
.+.|.||||+|||||+++|+.......
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~ 30 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRK 30 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 588999999999999999999876543
No 279
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.20 E-value=9.3e-07 Score=60.92 Aligned_cols=29 Identities=28% Similarity=0.400 Sum_probs=26.6
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
++.+..+.|+||||||||||++.++....
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~~ 156 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMVQ 156 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 67899999999999999999999998863
No 280
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.18 E-value=3e-07 Score=70.61 Aligned_cols=43 Identities=21% Similarity=0.362 Sum_probs=34.3
Q ss_pred CCcc--ccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 2 KFSH--SKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 2 ~~~~--~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
.|++ ..+++++ +..|..+.|.||+|||||||+++|+..+....
T Consensus 680 ~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~s 727 (986)
T 2iw3_A 680 QYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTS 727 (986)
T ss_dssp CCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSE
T ss_pred EeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 4543 3456665 88899999999999999999999998876543
No 281
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.17 E-value=1.3e-06 Score=58.81 Aligned_cols=28 Identities=21% Similarity=0.383 Sum_probs=24.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
.+..+.|.||+||||||+++.|+..++.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 3567999999999999999999988763
No 282
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=98.16 E-value=1.7e-06 Score=56.69 Aligned_cols=31 Identities=26% Similarity=0.476 Sum_probs=28.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCccccc
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQ 48 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~ 48 (105)
.+-|.|||||||||+++.|+..++.++++..
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~g 40 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQISTG 40 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeech
Confidence 5789999999999999999999999988764
No 283
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=98.15 E-value=1.1e-06 Score=61.83 Aligned_cols=32 Identities=28% Similarity=0.524 Sum_probs=27.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCcccc
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTP 47 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~ 47 (105)
.+.++|.||+|||||+|+..+|..++..++..
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~ 33 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINS 33 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEEC
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeec
Confidence 45789999999999999999999998765543
No 284
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.15 E-value=1.3e-06 Score=60.48 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=25.7
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
++.+..++|+||||||||||+..++....
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 55688999999999999999999998764
No 285
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.15 E-value=2.3e-06 Score=61.39 Aligned_cols=33 Identities=24% Similarity=0.251 Sum_probs=28.2
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccc
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQT 46 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~ 46 (105)
+.. ..+.|.||+|||||||+++++..+......
T Consensus 27 i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~ 59 (483)
T 3euj_A 27 FDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTL 59 (483)
T ss_dssp CCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTT
T ss_pred Ecc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCE
Confidence 666 899999999999999999999988765433
No 286
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.14 E-value=1.4e-06 Score=63.25 Aligned_cols=34 Identities=29% Similarity=0.338 Sum_probs=28.9
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccc
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQT 46 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~ 46 (105)
+..|..+.|.||+|||||||+++|+.........
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~ 342 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK 342 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence 4678999999999999999999999887654443
No 287
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.14 E-value=8.3e-07 Score=64.08 Aligned_cols=31 Identities=19% Similarity=0.254 Sum_probs=27.2
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
+..+..+++.||+||||||++++++..+...
T Consensus 257 v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~ 287 (511)
T 2oap_1 257 IEHKFSAIVVGETASGKTTTLNAIMMFIPPD 287 (511)
T ss_dssp HHTTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhhCCCC
Confidence 5678889999999999999999999888643
No 288
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.14 E-value=5.5e-07 Score=56.95 Aligned_cols=33 Identities=15% Similarity=0.157 Sum_probs=26.0
Q ss_pred ccccc-ccCCceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 8 VKSNI-ISWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 8 ~~~~~-~~~~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
+..++ +..+..+.|.|++|+|||||+++++...
T Consensus 17 ~l~~~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 17 DIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SGGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CHhHCCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33334 6677889999999999999999987544
No 289
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.13 E-value=4.4e-07 Score=57.67 Aligned_cols=25 Identities=20% Similarity=0.489 Sum_probs=22.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
.+.|.|++||||||+++.|+..++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 5889999999999999999998864
No 290
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.13 E-value=6.2e-07 Score=60.38 Aligned_cols=26 Identities=15% Similarity=0.419 Sum_probs=20.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
+..|.|.||+||||||+++.++..++
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45799999999999999999999876
No 291
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.12 E-value=8.1e-07 Score=64.67 Aligned_cols=29 Identities=31% Similarity=0.487 Sum_probs=26.3
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
+..+..+.|.|++||||||++++|+..++
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 44678899999999999999999999986
No 292
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.12 E-value=1.6e-06 Score=63.77 Aligned_cols=34 Identities=29% Similarity=0.335 Sum_probs=28.9
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccc
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQT 46 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~ 46 (105)
+..|..+.|.||+|||||||+++|+..+......
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~ 412 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK 412 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSC
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence 4678999999999999999999999887654443
No 293
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.11 E-value=1.4e-06 Score=63.32 Aligned_cols=35 Identities=17% Similarity=0.356 Sum_probs=29.6
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcccc
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTP 47 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~ 47 (105)
+..|..+.|.||+|||||||+++|+.........+
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 325 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILVGEITADEGSV 325 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCE
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 56789999999999999999999998876554443
No 294
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.11 E-value=2.5e-06 Score=57.93 Aligned_cols=29 Identities=31% Similarity=0.419 Sum_probs=25.5
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
..++.++++||+|+||||++..+|..+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 45778999999999999999999988753
No 295
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.10 E-value=2.3e-06 Score=57.75 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=24.9
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
..++.++++||+|+||||++..+|..+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3577899999999999999999998775
No 296
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.08 E-value=2.3e-06 Score=59.05 Aligned_cols=29 Identities=24% Similarity=0.456 Sum_probs=25.2
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
++.+..++|+||||+|||||+..++....
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999999987653
No 297
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=98.08 E-value=2.7e-06 Score=62.79 Aligned_cols=34 Identities=32% Similarity=0.378 Sum_probs=28.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHh---CCCccccc
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKL---SIRLQTPQ 48 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~---~~~~~~~~ 48 (105)
.+..|+|.|++||||||+++.|+..+ +.+++.++
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 35679999999999999999999998 77765553
No 298
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.06 E-value=1.5e-06 Score=68.63 Aligned_cols=41 Identities=15% Similarity=0.277 Sum_probs=35.2
Q ss_pred ccccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccc
Q psy4924 6 SKVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQT 46 (105)
Q Consensus 6 ~~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~ 46 (105)
..+++++ +++|..+.|+||+|||||||++.+.+........
T Consensus 431 ~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~ 474 (1321)
T 4f4c_A 431 VPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGK 474 (1321)
T ss_dssp SCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEE
T ss_pred CceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCc
Confidence 4577777 8999999999999999999999999888765443
No 299
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.06 E-value=1.3e-06 Score=68.75 Aligned_cols=39 Identities=15% Similarity=0.235 Sum_probs=33.6
Q ss_pred cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 7 KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 7 ~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.+++++ +++|..+.|+||+|||||||++.+++.......
T Consensus 404 ~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G 445 (1284)
T 3g5u_A 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDG 445 (1284)
T ss_dssp CSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEE
T ss_pred cceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 477777 889999999999999999999999988765433
No 300
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=98.05 E-value=2.6e-06 Score=61.60 Aligned_cols=31 Identities=26% Similarity=0.320 Sum_probs=26.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.+..|+++|.|||||||+++.++..++..++
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~ 64 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGV 64 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence 3457999999999999999999999865543
No 301
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.05 E-value=1.7e-06 Score=56.13 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=23.6
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
..|..+.|.||+||||||+++.++..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45778999999999999999999887
No 302
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.04 E-value=4.6e-06 Score=50.89 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=22.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
+...+|+||+|+|||+++.+++..+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999998766
No 303
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.04 E-value=3.4e-06 Score=59.22 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=24.5
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
++.+..+.|+||||||||||++.++...
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~~~ 202 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAVTC 202 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHHHh
Confidence 6678999999999999999999877444
No 304
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=98.04 E-value=9e-06 Score=52.50 Aligned_cols=32 Identities=25% Similarity=0.297 Sum_probs=28.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
-.+-|+|..||||||+++.++. +|.++++.+.
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ 41 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTDL 41 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECcH
Confidence 4588999999999999999998 9999988775
No 305
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.03 E-value=3e-06 Score=61.08 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=24.0
Q ss_pred ccCCceEEEEcCCCCCHHHHHHH--HHHHh
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKA--VAQKL 40 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~--la~~~ 40 (105)
++.|..++|.||||||||||+++ ++...
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999 45544
No 306
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.03 E-value=2.8e-06 Score=66.95 Aligned_cols=38 Identities=16% Similarity=0.280 Sum_probs=32.9
Q ss_pred cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 7 KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 7 ~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
.+++++ +.+|..+.|+||+|||||||++.+++.....-
T Consensus 1047 ~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~ 1087 (1284)
T 3g5u_A 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMA 1087 (1284)
T ss_dssp CSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSE
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC
Confidence 467777 88999999999999999999999998776543
No 307
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=98.02 E-value=4.3e-06 Score=54.37 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=30.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCccccce
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~ 49 (105)
...|.|.|++||||||+++.+|..++.++++.+.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~~ 47 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIHFYDDDI 47 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCEEECHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHHH
Confidence 3579999999999999999999999999988544
No 308
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.02 E-value=4.8e-06 Score=57.16 Aligned_cols=29 Identities=24% Similarity=0.216 Sum_probs=25.9
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
++.+..+.|+||||||||+|+..+|....
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~~ 147 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTAQ 147 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 66788999999999999999999998743
No 309
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.02 E-value=1.5e-06 Score=54.44 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=23.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
+.+.|+||+|||||||++.++..+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 568999999999999999999988644
No 310
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.02 E-value=4.1e-06 Score=56.99 Aligned_cols=29 Identities=28% Similarity=0.512 Sum_probs=25.9
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
++.+..++|+||||+|||+|+..++....
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~~ 132 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNVQ 132 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHHh
Confidence 56788999999999999999999998754
No 311
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.01 E-value=1.5e-06 Score=68.56 Aligned_cols=39 Identities=15% Similarity=0.295 Sum_probs=34.1
Q ss_pred cccccc---ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcc
Q psy4924 7 KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45 (105)
Q Consensus 7 ~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~ 45 (105)
.+++++ +++|..+.|+||+|||||||++.+.+.....-+
T Consensus 1093 ~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G 1134 (1321)
T 4f4c_A 1093 EILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGG 1134 (1321)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSS
T ss_pred ccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCC
Confidence 578888 999999999999999999999999987765443
No 312
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.01 E-value=4.5e-06 Score=56.41 Aligned_cols=34 Identities=26% Similarity=0.406 Sum_probs=26.9
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhCCCccccc
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQ 48 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~ 48 (105)
..+..+.|.||||+|||||+++|+ ........+.
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~ 196 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELRTQEVS 196 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC-
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccc
Confidence 347789999999999999999999 7665544443
No 313
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=98.01 E-value=5.1e-06 Score=52.10 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=23.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.+.+.+.||+||||||+++.+...+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 45789999999999999999998764
No 314
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=98.00 E-value=4.2e-06 Score=52.34 Aligned_cols=28 Identities=21% Similarity=0.127 Sum_probs=24.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.+.+.+.|++||||||++..++..+...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 3578999999999999999999887543
No 315
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=98.00 E-value=1.1e-05 Score=50.88 Aligned_cols=42 Identities=26% Similarity=0.284 Sum_probs=31.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCccccceeeecccCC
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPN 57 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~~~~~~~~~ 57 (105)
.++.++|.|+||+||||++..+... +..++.-+...+.....
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r-G~~lvaDD~v~i~~~~~ 56 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR-GHQLVCDDVIDLKQENN 56 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT-TCEEEESSEEEEEESSS
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CCeEecCCEEEEEEeCC
Confidence 5789999999999999999999874 55555555544444344
No 316
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.00 E-value=2.9e-06 Score=57.33 Aligned_cols=35 Identities=20% Similarity=0.380 Sum_probs=20.1
Q ss_pred CCcccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 2 KFSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 2 ~~~~~~~~~~~~~~~~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
.|++..+.+++ .-.++|.||+|+|||||++.|+..
T Consensus 7 ~~~~~~~l~~~---~~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 7 QVHRKSVKKGF---EFTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp --------------CEEEEEEEETTSSHHHHHHHHHC-
T ss_pred eECCEEEEcCC---CEEEEEECCCCCCHHHHHHHHhCC
Confidence 45555555543 345799999999999999998754
No 317
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.00 E-value=3.7e-06 Score=58.06 Aligned_cols=27 Identities=30% Similarity=0.424 Sum_probs=23.5
Q ss_pred CCceEEE--EcCCCCCHHHHHHHHHHHhC
Q psy4924 15 WNRVVLL--HGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 15 ~~~~ill--~Gp~GsGKT~l~~~la~~~~ 41 (105)
.+..++| +||+|+|||++++.+++.+.
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~ 77 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVS 77 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence 4567899 99999999999999998763
No 318
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.99 E-value=3.9e-06 Score=58.17 Aligned_cols=31 Identities=29% Similarity=0.413 Sum_probs=26.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhC-CCcc
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLS-IRLQ 45 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~-~~~~ 45 (105)
.+..+.|.||||+|||||+++|+.... ....
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G 245 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQNEILTN 245 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC
T ss_pred CCCEEEEECCCCccHHHHHHHHhccccccccC
Confidence 577899999999999999999998776 4433
No 319
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.99 E-value=3.2e-06 Score=57.06 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=26.0
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhCCCccc
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQT 46 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~ 46 (105)
..+..+.|.||||+|||||+++|+.........
T Consensus 167 l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~ 199 (301)
T 1u0l_A 167 LKGKISTMAGLSGVGKSSLLNAINPGLKLRVSE 199 (301)
T ss_dssp HSSSEEEEECSTTSSHHHHHHHHSTTCCCC---
T ss_pred hcCCeEEEECCCCCcHHHHHHHhcccccccccc
Confidence 357789999999999999999999877654433
No 320
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.99 E-value=5.4e-06 Score=61.10 Aligned_cols=26 Identities=35% Similarity=0.701 Sum_probs=19.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
.....+|.||||||||+.+-.+..++
T Consensus 204 ~~~~~lI~GPPGTGKT~ti~~~I~~l 229 (646)
T 4b3f_X 204 QKELAIIHGPPGTGKTTTVVEIILQA 229 (646)
T ss_dssp CSSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34578999999999998655544433
No 321
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.99 E-value=6.2e-06 Score=53.20 Aligned_cols=30 Identities=33% Similarity=0.424 Sum_probs=26.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
.+..|.|.|++||||||+++.++..+....
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 34 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERG 34 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 367899999999999999999999887543
No 322
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.98 E-value=7.9e-06 Score=57.48 Aligned_cols=31 Identities=26% Similarity=0.511 Sum_probs=26.2
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
+..+...+|+||+|+|||+++++++..++..
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 3456789999999999999999999887654
No 323
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.98 E-value=4.5e-06 Score=59.43 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=26.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCccc
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQT 46 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~ 46 (105)
+..++++|.|||||||+++.++..++..+.+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~ 69 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVP 69 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCC
Confidence 4579999999999999999999987654443
No 324
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.97 E-value=5.6e-06 Score=53.44 Aligned_cols=27 Identities=37% Similarity=0.484 Sum_probs=23.6
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
++.|..++|.|+||+|||+|+..+|..
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 667889999999999999999887644
No 325
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.97 E-value=4.9e-06 Score=52.18 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
-.+.|.|++|+|||||++.++...-
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC
Confidence 4689999999999999999997653
No 326
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.97 E-value=5.5e-06 Score=52.08 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
-.+.|.|++|+|||||++.++...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999999764
No 327
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.96 E-value=5.4e-06 Score=55.90 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=23.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
+.++|+||+|+|||+|++.+++..+.
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~ 56 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNL 56 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCC
Confidence 58999999999999999999998764
No 328
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.96 E-value=5.3e-06 Score=58.56 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.++|+||+|+|||||++.++....
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 479999999999999999987653
No 329
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.95 E-value=6.1e-06 Score=59.59 Aligned_cols=28 Identities=11% Similarity=0.061 Sum_probs=25.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
.+..++|.|.+||||||++++|++.++.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999999986
No 330
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=97.95 E-value=6.4e-06 Score=53.56 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=23.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
+..+.+.|++||||||+++.++..++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 56799999999999999999999984
No 331
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=97.95 E-value=3.6e-06 Score=53.15 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=21.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 19 VLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 19 ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
++++|++|||||++|+.++.. +.+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~ 26 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQV 26 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSE
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCe
Confidence 789999999999999999977 6543
No 332
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.95 E-value=7.7e-06 Score=55.81 Aligned_cols=30 Identities=27% Similarity=0.283 Sum_probs=26.3
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
...++.++++||+|+||||++..+|..+..
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 456788999999999999999999988764
No 333
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.94 E-value=6.5e-06 Score=56.97 Aligned_cols=29 Identities=31% Similarity=0.497 Sum_probs=25.3
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
++.+..++|+||||+|||||+..++....
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999999987653
No 334
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.93 E-value=8.2e-06 Score=52.12 Aligned_cols=28 Identities=32% Similarity=0.437 Sum_probs=24.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
+...+|+||+|+||||++.+|...+..+
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~g~ 50 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLYWP 50 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 4678999999999999999999888763
No 335
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.93 E-value=6.1e-06 Score=55.88 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=25.2
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
++.+..++|+||||+|||+|+..+|...
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5678899999999999999999999764
No 336
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.93 E-value=6.3e-06 Score=59.43 Aligned_cols=30 Identities=27% Similarity=0.401 Sum_probs=26.8
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
+..|..++|.||||||||||++.++.....
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~ 307 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACA 307 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 677899999999999999999999987643
No 337
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.93 E-value=4e-06 Score=59.11 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=22.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
.+.|.||||+|||||+++++.....
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p 95 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNE 95 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTT
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCc
Confidence 8999999999999999999986543
No 338
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.92 E-value=7.8e-06 Score=60.17 Aligned_cols=29 Identities=34% Similarity=0.503 Sum_probs=25.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCc
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~~ 44 (105)
+..+.|.||+|||||||+++|+..+....
T Consensus 378 GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~ 406 (608)
T 3j16_B 378 SEILVMMGENGTGKTTLIKLLAGALKPDE 406 (608)
T ss_dssp TCEEEEESCTTSSHHHHHHHHHTSSCCSB
T ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCCC
Confidence 46799999999999999999998876543
No 339
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.91 E-value=8e-06 Score=56.56 Aligned_cols=24 Identities=38% Similarity=0.724 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
...+|+||+||||||+..+|+..+
T Consensus 24 g~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 378899999999999999998665
No 340
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.91 E-value=8.6e-06 Score=61.35 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=23.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
++.+.|.||||+||||+++.++...
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 8899999999999999999998754
No 341
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.89 E-value=1e-05 Score=54.52 Aligned_cols=27 Identities=30% Similarity=0.300 Sum_probs=23.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.++.++|+||+|+|||+|++.+++..+
T Consensus 30 ~~~~v~i~G~~G~GKT~Ll~~~~~~~~ 56 (350)
T 2qen_A 30 NYPLTLLLGIRRVGKSSLLRAFLNERP 56 (350)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred cCCeEEEECCCcCCHHHHHHHHHHHcC
Confidence 357899999999999999999988753
No 342
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.89 E-value=1e-05 Score=50.92 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=20.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
+..++++||+|+||||++..++...
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 5678999999999999986666544
No 343
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=97.88 E-value=8.4e-06 Score=59.60 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=24.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
+..++|.|++||||||+++.|+..++
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 45799999999999999999999987
No 344
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.88 E-value=9.5e-06 Score=57.53 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=24.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
.+..+++.||+|+||||++..+|..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999977753
No 345
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.87 E-value=1.5e-06 Score=59.14 Aligned_cols=34 Identities=26% Similarity=0.483 Sum_probs=23.6
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCCccc
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQT 46 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~ 46 (105)
+..+..+.|.||||+|||||+++|+.........
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~ 203 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNE 203 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC--------
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhcccccccccc
Confidence 4468899999999999999999998776544433
No 346
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.87 E-value=1.6e-05 Score=55.89 Aligned_cols=30 Identities=33% Similarity=0.506 Sum_probs=26.8
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
+..|..+.|+||+|+|||+|++.+++..+.
T Consensus 171 i~rGQr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 171 IGRGQRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp CBTTCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred ecCCcEEEEecCCCCChhHHHHHHHHHHhh
Confidence 667889999999999999999999987753
No 347
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.87 E-value=8.9e-06 Score=53.34 Aligned_cols=29 Identities=21% Similarity=0.438 Sum_probs=25.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.+..+.+.|++||||||+++.++..+...
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~ 54 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQN 54 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 36789999999999999999999988643
No 348
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=97.86 E-value=1.4e-05 Score=51.77 Aligned_cols=28 Identities=32% Similarity=0.576 Sum_probs=25.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
.|..+.+.|++||||||+++.++..++.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4788999999999999999999999974
No 349
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.86 E-value=6.5e-06 Score=63.04 Aligned_cols=32 Identities=38% Similarity=0.454 Sum_probs=25.8
Q ss_pred cccccc---ccCCceEEEEcCCCCCHHHHHHHHHH
Q psy4924 7 KVKSNI---ISWNRVVLLHGPPGTGKTSLCKAVAQ 38 (105)
Q Consensus 7 ~~~~~~---~~~~~~ill~Gp~GsGKT~l~~~la~ 38 (105)
.+..++ +..++.+.|.||+|+||||+++.++.
T Consensus 661 ~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 661 YVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred eecccccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 344444 45688999999999999999999874
No 350
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.86 E-value=1e-05 Score=52.82 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=22.5
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
..+..|.|.||+||||||+++.++..+..
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34678999999999999999999998854
No 351
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.86 E-value=2.8e-06 Score=59.20 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=26.0
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
+.++ .+.|+||||+|||||+++|+..++.
T Consensus 58 ~~~G-~~~lvG~NGaGKStLl~aI~~l~~~ 86 (415)
T 4aby_A 58 LGGG-FCAFTGETGAGKSIIVDALGLLLGG 86 (415)
T ss_dssp CCSS-EEEEEESHHHHHHHHTHHHHHHTTC
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5667 8999999999999999999988875
No 352
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.85 E-value=1.5e-05 Score=54.10 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=26.0
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
+.+|..++|.|+||+|||+|+..+|....
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a 93 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMS 93 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 67788999999999999999999987664
No 353
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.84 E-value=5.6e-06 Score=61.30 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=22.5
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHH
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVA 37 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la 37 (105)
++.|..+.|.||||||||||++++.
T Consensus 345 I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 345 IPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EETTSEEEEECSTTSSHHHHHTTTH
T ss_pred ecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 7789999999999999999997653
No 354
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=97.83 E-value=4.8e-06 Score=54.86 Aligned_cols=28 Identities=14% Similarity=0.264 Sum_probs=24.4
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
..+..|+|.|++||||||+++.|+..+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3467899999999999999999999883
No 355
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.83 E-value=1.5e-05 Score=54.47 Aligned_cols=28 Identities=32% Similarity=0.437 Sum_probs=23.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
+...+|+||+|+|||+++.+|+..+..+
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi~~~l~~~ 50 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAILVGLYWP 50 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHCS
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4578999999999999999997766543
No 356
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.82 E-value=3.3e-06 Score=55.10 Aligned_cols=27 Identities=30% Similarity=0.331 Sum_probs=23.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
..+.|.||+||||||++++|+..+...
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~ 54 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPD 54 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccC
Confidence 457889999999999999999998754
No 357
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.82 E-value=1.4e-05 Score=61.81 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=20.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHH
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVA 37 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la 37 (105)
++.++|.||+|+||||+++.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 6899999999999999999983
No 358
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.82 E-value=1.7e-05 Score=56.21 Aligned_cols=29 Identities=21% Similarity=0.483 Sum_probs=26.0
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
+.+|..++|.|+||+|||+|+..++....
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67788999999999999999999987664
No 359
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.81 E-value=1.3e-05 Score=55.60 Aligned_cols=29 Identities=31% Similarity=0.505 Sum_probs=25.1
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
++.+..++|+||||+|||+|+..++....
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~ 99 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQ 99 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHH
Confidence 45688899999999999999999887653
No 360
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.81 E-value=1.8e-05 Score=53.29 Aligned_cols=28 Identities=25% Similarity=0.229 Sum_probs=25.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
.++.+.++|++|+||||++..+|..+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~ 124 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6778999999999999999999988753
No 361
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.81 E-value=1.2e-05 Score=49.47 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
.+..++|.|++|+|||||++.++...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35679999999999999999998653
No 362
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.80 E-value=1.4e-05 Score=61.29 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=22.2
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHH
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVA 37 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la 37 (105)
+..++.++|.||+|+||||+++.++
T Consensus 659 ~~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 659 KDKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp TTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4557889999999999999999984
No 363
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.80 E-value=1.3e-05 Score=64.69 Aligned_cols=31 Identities=29% Similarity=0.444 Sum_probs=26.5
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
++.|+.++++||||||||+||++++.+-...
T Consensus 1079 ~p~g~~~l~~G~~g~GKT~la~~~~~~~~~~ 1109 (1706)
T 3cmw_A 1079 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE 1109 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEcCCCCChHHHHHHHHHHhhhc
Confidence 4567889999999999999999999876543
No 364
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.80 E-value=1.7e-05 Score=51.63 Aligned_cols=28 Identities=29% Similarity=0.357 Sum_probs=25.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
.+..|.+.|++||||||+++.++..++.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999998865
No 365
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.80 E-value=1.6e-05 Score=55.03 Aligned_cols=30 Identities=30% Similarity=0.304 Sum_probs=24.1
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
+.++ ..+|+||+|+|||+++++++......
T Consensus 24 ~~~g-~~~i~G~nG~GKttll~ai~~~~~g~ 53 (359)
T 2o5v_A 24 FPEG-VTGIYGENGAGKTNLLEAAYLALTGQ 53 (359)
T ss_dssp CCSE-EEEEECCTTSSHHHHHHHHHHHHHSC
T ss_pred EcCC-eEEEECCCCCChhHHHHHHHHhccCC
Confidence 3444 89999999999999999998755433
No 366
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.80 E-value=1.6e-05 Score=60.21 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=23.3
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
+.++.+.|.||||+||||++++++..
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 45778999999999999999999875
No 367
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=97.80 E-value=1.2e-05 Score=57.84 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=24.4
Q ss_pred cCCEEEEEeeCCCC-----------CCCHHhhcccceEEE-eCCCCH
Q psy4924 55 YPNVLIFTTSNLTG-----------AIDLAFLDRADIKQY-IGFPSA 89 (105)
Q Consensus 55 ~~~~~~~~~~n~~~-----------~~d~~~~~r~~~~~~-~~~~~~ 89 (105)
..++.+++|+|... .+..++++|||+... .++|+.
T Consensus 337 parf~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~ 383 (506)
T 3f8t_A 337 NARCAVLAAINPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRP 383 (506)
T ss_dssp ECCCEEEEEECCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC----
T ss_pred CCCeEEEEEeCcccccCCCCCccccCCChHHhhheeeEEEecCCCCh
Confidence 35678999999864 788899999988654 456643
No 368
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.79 E-value=1.8e-05 Score=47.52 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
..+++.|++|+|||||++.++...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998654
No 369
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.78 E-value=1.7e-05 Score=48.42 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
..+.+.|++|+|||||++.++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 370
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.78 E-value=1.5e-05 Score=65.11 Aligned_cols=31 Identities=29% Similarity=0.444 Sum_probs=26.9
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
++.++.++|+|||||||||||.+++.+....
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~ 1454 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE 1454 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4578999999999999999999998877543
No 371
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=97.78 E-value=2.1e-05 Score=50.80 Aligned_cols=28 Identities=25% Similarity=0.457 Sum_probs=24.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
|..|.+.|++||||||.++.++..+...
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 6789999999999999999999988643
No 372
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.78 E-value=2.1e-05 Score=54.16 Aligned_cols=25 Identities=36% Similarity=0.583 Sum_probs=22.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
+..+.|.|+||+|||||+++++..+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 5679999999999999999999764
No 373
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.78 E-value=1.2e-05 Score=54.70 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=21.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
+.++|.|++||||||+++.+....
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 568999999999999999999764
No 374
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.78 E-value=1.3e-05 Score=49.70 Aligned_cols=22 Identities=27% Similarity=0.575 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHHH
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~ 39 (105)
.+++.|++|+|||||++.++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999863
No 375
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.77 E-value=2.3e-05 Score=47.83 Aligned_cols=27 Identities=30% Similarity=0.414 Sum_probs=23.0
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
......+++.|++|+|||||++.+...
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345678999999999999999999753
No 376
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.77 E-value=2.3e-05 Score=55.59 Aligned_cols=26 Identities=38% Similarity=0.602 Sum_probs=23.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
..++|.||+|||||+++..++..+..
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~ 71 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALIS 71 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 48999999999999999999887753
No 377
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.76 E-value=1.9e-05 Score=54.18 Aligned_cols=27 Identities=15% Similarity=0.314 Sum_probs=22.5
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
++.+ .++|+||||+|||||+..++...
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 5567 79999999999999988776655
No 378
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.76 E-value=0.00011 Score=62.12 Aligned_cols=81 Identities=20% Similarity=0.115 Sum_probs=61.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCccccce---------------------------------------------
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA--------------------------------------------- 49 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~--------------------------------------------- 49 (105)
...+..+.||+|+|||.+++.+|+.+|.+.+....
T Consensus 603 ~~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~g~i~~G~~~~GaW~cfDEfNrl~~~vLSvv~~qi~~ 682 (3245)
T 3vkg_A 603 SRMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRLEERILSAVSQQIQT 682 (3245)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHHHTCEEEEETTTSSCHHHHHHHHHHHHH
T ss_pred hcCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHhhHhhcCcEEEehhhhcCCHHHHHHHHHHHHH
Confidence 35667899999999999999999999988765443
Q ss_pred -----------e------eecccCCEEEEEeeCC----CCCCCHHhhcccceEEEeCCCCHHHHHHHH
Q psy4924 50 -----------I------FFKKYPNVLIFTTSNL----TGAIDLAFLDRADIKQYIGFPSAAAIFNIF 96 (105)
Q Consensus 50 -----------~------~~~~~~~~~~~~~~n~----~~~~d~~~~~r~~~~~~~~~~~~~~~~~i~ 96 (105)
+ .+...+...++.|.|. ...++.++..||-. +.+..|+.+...++.
T Consensus 683 I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lFr~-v~m~~Pd~~~i~ei~ 749 (3245)
T 3vkg_A 683 IQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFRS-MAMIKPDREMIAQVM 749 (3245)
T ss_dssp HHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTEEE-EECCSCCHHHHHHHH
T ss_pred HHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhcEE-EEEeCCCHHHHHHHH
Confidence 0 1223345667888874 36888988888855 788999988776664
No 379
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.76 E-value=1.3e-05 Score=59.41 Aligned_cols=26 Identities=42% Similarity=0.654 Sum_probs=22.5
Q ss_pred ccccc---ccCCceEEEEcCCCCCHHHHH
Q psy4924 8 VKSNI---ISWNRVVLLHGPPGTGKTSLC 33 (105)
Q Consensus 8 ~~~~~---~~~~~~ill~Gp~GsGKT~l~ 33 (105)
+++++ ++.|..+.|.||||||||||+
T Consensus 33 ~L~~vsl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 33 NLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp TCCSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred ceeccEEEECCCCEEEEECCCCCCHHHHh
Confidence 45555 788999999999999999997
No 380
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.75 E-value=0.00037 Score=43.18 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
.+++.|++|+|||||++.+....
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 69999999999999998877643
No 381
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.75 E-value=2.6e-05 Score=48.38 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=22.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
...++++|++|+|||||+..++...
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999998754
No 382
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.74 E-value=2.6e-05 Score=55.48 Aligned_cols=29 Identities=28% Similarity=0.428 Sum_probs=25.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.+..++++|++|+||||++..+|..+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 36789999999999999999999877643
No 383
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.74 E-value=1.9e-05 Score=48.75 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
..+++.|++|+|||||++.++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999864
No 384
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.74 E-value=2.8e-05 Score=50.59 Aligned_cols=29 Identities=21% Similarity=0.222 Sum_probs=23.5
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
-..+..++++||+|+||||++..++....
T Consensus 9 ~~~G~i~litG~mGsGKTT~ll~~~~r~~ 37 (223)
T 2b8t_A 9 KKIGWIEFITGPMFAGKTAELIRRLHRLE 37 (223)
T ss_dssp --CCEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred cCCcEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 34577899999999999999888877764
No 385
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.73 E-value=2.4e-05 Score=47.19 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
-.+++.|++|+|||||++.+....
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998653
No 386
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.72 E-value=2.9e-05 Score=49.21 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
...++++|++|+|||||+..++...
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999998765
No 387
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.72 E-value=2.7e-05 Score=56.96 Aligned_cols=26 Identities=50% Similarity=0.750 Sum_probs=23.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.+.++|.|||||||||++.+++..+.
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~ 229 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAE 229 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999987664
No 388
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.72 E-value=2.1e-05 Score=53.44 Aligned_cols=25 Identities=32% Similarity=0.622 Sum_probs=22.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
...+|+||+|+|||++++++...++
T Consensus 25 g~~~i~G~NGsGKS~ll~ai~~llg 49 (322)
T 1e69_A 25 RVTAIVGPNGSGKSNIIDAIKWVFG 49 (322)
T ss_dssp SEEEEECCTTTCSTHHHHHHHHTSC
T ss_pred CcEEEECCCCCcHHHHHHHHHHHhC
Confidence 3899999999999999999997653
No 389
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.71 E-value=2.9e-05 Score=46.66 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
-.+++.|++|+|||||++.+....
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999988643
No 390
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.70 E-value=2.7e-05 Score=46.68 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
.+++.|++|+|||||++.+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998653
No 391
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.68 E-value=3.6e-05 Score=52.75 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=24.6
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
...+..+.+.|+||+||||+++.++..+
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4567789999999999999999998765
No 392
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.68 E-value=3.4e-05 Score=54.55 Aligned_cols=29 Identities=21% Similarity=0.383 Sum_probs=25.8
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
+.++..++|.|+||+|||+|+..+|....
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 66788999999999999999999987654
No 393
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.68 E-value=3.3e-05 Score=46.61 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
-.+++.|++|+|||||++.+....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998654
No 394
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.68 E-value=3.4e-05 Score=46.40 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
..+++.|++|+|||||++.+...-
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 469999999999999999998643
No 395
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.67 E-value=3.5e-05 Score=46.56 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
-.+++.|++|+|||||++.+....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998654
No 396
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.67 E-value=4.3e-05 Score=46.26 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
....+++.|++|+|||||++.+...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3567999999999999999999754
No 397
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.67 E-value=3.6e-05 Score=46.56 Aligned_cols=24 Identities=33% Similarity=0.286 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
-.+++.|++|+|||||++.+....
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998653
No 398
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.67 E-value=3.2e-05 Score=46.99 Aligned_cols=24 Identities=50% Similarity=0.620 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
-.+++.|++|+|||||++.+....
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEECCCCccHHHHHHHHhcCC
Confidence 469999999999999999997543
No 399
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.67 E-value=3.5e-05 Score=46.98 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
-.+++.|++|+|||||++.+....
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999998643
No 400
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.67 E-value=2.5e-05 Score=55.29 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=23.2
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
+..++++|++|+||||++..+|..+.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999998764
No 401
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.67 E-value=3.6e-05 Score=47.02 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
..+++.|++|+|||||++.+....
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 469999999999999999988643
No 402
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.65 E-value=3.4e-05 Score=46.62 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
-.+++.|++|+|||||++.+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999854
No 403
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.65 E-value=3.4e-05 Score=46.64 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
-.+++.|++|+|||||++.+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999863
No 404
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.65 E-value=4.2e-05 Score=48.60 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=23.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
...+++.|++|+|||||+..++....
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 45799999999999999999998764
No 405
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.64 E-value=4.2e-05 Score=46.07 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
-.+++.|++|+|||||++.+...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999864
No 406
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.63 E-value=0.00066 Score=42.42 Aligned_cols=25 Identities=32% Similarity=0.344 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
...+++.|++|+|||||++.+....
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 3469999999999999999998654
No 407
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.63 E-value=3.9e-05 Score=46.42 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQ 38 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~ 38 (105)
.+++.|++|+|||||++.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999874
No 408
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.63 E-value=4.3e-05 Score=46.06 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
-.+++.|++|+|||||++.+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 409
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.63 E-value=4.9e-05 Score=53.77 Aligned_cols=29 Identities=24% Similarity=0.252 Sum_probs=25.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.+..+++.||+|+||||++..+|..+...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 57789999999999999999999988654
No 410
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.62 E-value=4.3e-05 Score=47.06 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
-.+++.|++|+|||||++.+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999864
No 411
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.62 E-value=3.6e-05 Score=51.97 Aligned_cols=26 Identities=35% Similarity=0.425 Sum_probs=23.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
+..+++.|++|+||||++..+|..+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 77899999999999999999998775
No 412
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.61 E-value=4.4e-05 Score=46.57 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
-.+++.|++|+|||||++.+....
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhCc
Confidence 369999999999999999998643
No 413
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=97.61 E-value=3.9e-05 Score=55.77 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=24.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
+..+++.|++||||||+++.++..++.
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 567999999999999999999998764
No 414
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.61 E-value=5.1e-05 Score=45.68 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
.+++.|++|+|||+|++.+....
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999997643
No 415
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.61 E-value=4.7e-05 Score=48.63 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHH
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~ 39 (105)
..+++|+||||||+++..+...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 6899999999999998886444
No 416
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.60 E-value=6.8e-05 Score=54.24 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHHH
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQ 38 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~ 38 (105)
.+.+.|+|+.|+||||||+.+++
T Consensus 152 ~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 152 SFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 47899999999999999999996
No 417
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.60 E-value=4.9e-05 Score=47.05 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
.-.+++.|++|+|||||++.+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999875
No 418
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.60 E-value=5e-05 Score=46.68 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
-.+++.|++|+|||||++.+....
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 368999999999999999998644
No 419
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.60 E-value=3.8e-05 Score=46.34 Aligned_cols=21 Identities=43% Similarity=0.751 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQ 38 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~ 38 (105)
.+++.|++|+|||||++.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 589999999999999999864
No 420
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.59 E-value=4.6e-05 Score=46.45 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
..+++.|++|+|||||++.+...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999875
No 421
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.59 E-value=5.2e-05 Score=46.14 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
...+++.|++|+|||||++.+....
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3479999999999999999998654
No 422
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.59 E-value=5.2e-05 Score=46.92 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
-.+++.|++|+|||||++.++...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 369999999999999999998653
No 423
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.59 E-value=4.7e-05 Score=46.33 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
-.+++.|++|+|||||++.+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999854
No 424
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.59 E-value=5.6e-05 Score=46.23 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
-.+++.|++|+|||||++.+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36999999999999999999864
No 425
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.59 E-value=6e-05 Score=51.84 Aligned_cols=29 Identities=24% Similarity=0.321 Sum_probs=25.9
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
+.++..++|.|+||+|||+|+..+|....
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 67788999999999999999999987764
No 426
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.58 E-value=5.4e-05 Score=46.40 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
..+++.|++|+|||||++.+....
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Confidence 469999999999999999998643
No 427
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.58 E-value=5.4e-05 Score=47.02 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
-.+++.|++|+|||||++.+....
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 469999999999999999998754
No 428
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=97.58 E-value=7.8e-05 Score=50.84 Aligned_cols=35 Identities=23% Similarity=0.422 Sum_probs=27.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCcccccee
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAI 50 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~~ 50 (105)
.+..++|.|+||+||||++..+... +..+..-+..
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~dD~~ 177 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR-GHRLVADDNV 177 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESSEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc-CCceecCCeE
Confidence 4789999999999999999999875 5555544443
No 429
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.58 E-value=6.1e-05 Score=48.00 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=22.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
...+++.|++|+|||||+..++....
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 46789999999999999999998753
No 430
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.58 E-value=5e-05 Score=47.38 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
...+++.|++|+|||||++.++..
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999864
No 431
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.57 E-value=5.1e-05 Score=46.90 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
-.+++.|++|+|||||++.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999875
No 432
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.57 E-value=5.2e-05 Score=46.23 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
-.+++.|++|+|||||++.+...
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999998753
No 433
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.57 E-value=4.8e-05 Score=47.21 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
...+++.|++|+|||||++.+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999754
No 434
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.56 E-value=5.3e-05 Score=46.59 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=21.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
.-.+++.|++|+|||||++.+....
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3479999999999999999998654
No 435
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.56 E-value=5.9e-05 Score=52.84 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=24.1
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
+..+..+.|.|+||+|||||.++++..
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 556778999999999999999999983
No 436
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.55 E-value=5.2e-05 Score=46.85 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=21.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
...+++.|++|+|||||++.+...-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCc
Confidence 3479999999999999999998654
No 437
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.55 E-value=5.2e-05 Score=49.04 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
...++|+|++|+|||||++++.....
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCCc
Confidence 34799999999999999999986543
No 438
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.55 E-value=7.9e-05 Score=48.66 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=22.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
.+++.|++|+||||++-.+|..+...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 59999999999999988888776543
No 439
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.55 E-value=6.3e-05 Score=55.32 Aligned_cols=25 Identities=40% Similarity=0.740 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
.+..++.||||||||+++..++..+
T Consensus 195 ~~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 195 RPLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999888777665
No 440
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.55 E-value=6.4e-05 Score=46.15 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
-.+++.|++|+|||||++.+...
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999865
No 441
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.55 E-value=6.5e-05 Score=45.89 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=21.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
.-.+++.|++|+|||||++.+....
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 4479999999999999999997654
No 442
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.54 E-value=7.7e-05 Score=51.30 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
....+.|.|+||+||||++..++..+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999998876
No 443
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.54 E-value=6.6e-05 Score=51.89 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
+...+|+||+|+|||+++.+|+-.
T Consensus 25 ~gl~vi~G~NGaGKT~ileAI~~~ 48 (371)
T 3auy_A 25 KGIVAIIGENGSGKSSIFEAVFFA 48 (371)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999999973
No 444
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.54 E-value=6.7e-05 Score=46.36 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=22.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
-.+++.|++|+|||+|++.+......
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred cEEEEECCCCCCHHHHHHHHHhhccc
Confidence 46999999999999999988776543
No 445
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.53 E-value=2.8e-05 Score=57.18 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
.+.|+||+|||||||+++|+...
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 39999999999999999999865
No 446
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.53 E-value=6.9e-05 Score=45.94 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
-.+++.|++|+|||||++.+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999853
No 447
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=97.53 E-value=8.2e-05 Score=47.62 Aligned_cols=26 Identities=31% Similarity=0.639 Sum_probs=23.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
++-|.|-|+.||||||.++.|+..+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 45688999999999999999999885
No 448
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.53 E-value=6.9e-05 Score=55.05 Aligned_cols=27 Identities=33% Similarity=0.539 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.++.+++.|||||||||++..+...+.
T Consensus 163 ~~~~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 163 TRRISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp TBSEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999887766553
No 449
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.53 E-value=5.1e-05 Score=46.74 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHHH
Q psy4924 18 VVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 18 ~ill~Gp~GsGKT~l~~~la~~ 39 (105)
.+++.|++|+|||||++.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999999864
No 450
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.53 E-value=7e-05 Score=46.40 Aligned_cols=24 Identities=33% Similarity=0.292 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
-.+++.|++|+|||||++.+...-
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 479999999999999999998654
No 451
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.53 E-value=7e-05 Score=51.94 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
....+++.||+|+|||++++.++...-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~ 60 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY 60 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH
Confidence 356799999999999999999987764
No 452
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.52 E-value=7.1e-05 Score=46.39 Aligned_cols=24 Identities=33% Similarity=0.409 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
-.+++.|++|+|||||++.+....
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998644
No 453
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.52 E-value=7.1e-05 Score=46.74 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
..+++.|++|+|||||++.+....
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 469999999999999999998654
No 454
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.52 E-value=5.1e-05 Score=50.15 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
..+.|.|++|+|||||.+++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 56999999999999999999765
No 455
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.51 E-value=7.5e-05 Score=46.72 Aligned_cols=25 Identities=36% Similarity=0.429 Sum_probs=21.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
...+++.|++|+|||||++.+....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3469999999999999999998654
No 456
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.51 E-value=7e-05 Score=54.20 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
..+.+.|+||+|+|||+||+.++..
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHhc
Confidence 3568999999999999999998753
No 457
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.51 E-value=8.3e-05 Score=52.77 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=25.8
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
+.+|..++|.|+||+|||+|+..+|....
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a 222 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMS 222 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHH
Confidence 66788999999999999999999887764
No 458
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.50 E-value=7.5e-05 Score=46.38 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
-.+++.|++|+|||||++.+....
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 469999999999999999998765
No 459
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.50 E-value=8e-05 Score=45.55 Aligned_cols=24 Identities=21% Similarity=0.148 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
.-.+++.|++|+|||||++.+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999999864
No 460
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.50 E-value=8.1e-05 Score=46.11 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
..+++.|++|+|||||++.+...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999754
No 461
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.50 E-value=7.2e-05 Score=46.56 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=21.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
.-.+++.|++|+|||||++.+....
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3469999999999999999998654
No 462
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.50 E-value=8.2e-05 Score=46.40 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
.-.+++.|++|+|||||++.+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999875
No 463
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.49 E-value=8.4e-05 Score=46.18 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
-.+++.|++|+|||+|++.+....
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCcHHHHHHHHHhCC
Confidence 369999999999999999988653
No 464
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.49 E-value=8.4e-05 Score=46.17 Aligned_cols=24 Identities=25% Similarity=0.337 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
-.+++.|++|+|||||++.+...-
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 369999999999999999998643
No 465
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.49 E-value=8.5e-05 Score=45.93 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
-.+++.|++|+|||||++.+....
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 479999999999999999998654
No 466
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.49 E-value=7.8e-05 Score=46.10 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
...+++.|++|+|||||++.++..
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999998754
No 467
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=97.49 E-value=0.00016 Score=49.25 Aligned_cols=38 Identities=24% Similarity=0.239 Sum_probs=28.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCccccceeeec
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFK 53 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~~~~~~~~~~~~ 53 (105)
.+.+++|.|+||+||||+|..+.. -|..++.-+...+.
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~-~G~~lv~DD~v~i~ 183 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLIN-KNHLFVGDDAIEIY 183 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT-TTCEEEEEEEEEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH-cCCEEEeCCEEEEE
Confidence 478899999999999999988765 45555554444443
No 468
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.48 E-value=8.6e-05 Score=46.06 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
.-.+++.|++|+|||+|++.+...-
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCC
Confidence 3469999999999999999998643
No 469
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.48 E-value=7.4e-05 Score=46.74 Aligned_cols=25 Identities=28% Similarity=0.252 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
.-.+++.|++|+|||||++.+...-
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3479999999999999999987643
No 470
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.48 E-value=8.1e-05 Score=45.62 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
..+++.|++|+|||||++.+...
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999843
No 471
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.48 E-value=8.9e-05 Score=46.10 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
-.+++.|++|+|||||++.+....
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 369999999999999999998754
No 472
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.47 E-value=6.1e-05 Score=46.05 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
-.+++.|++|+|||+|++.++..-
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 469999999999999999998743
No 473
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.47 E-value=5.1e-05 Score=46.56 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHH
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQ 38 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~ 38 (105)
....+++.|++|+|||||++.+..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999998863
No 474
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.47 E-value=8.3e-05 Score=46.67 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
..+++.|++|+|||||++.+....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999998643
No 475
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.46 E-value=7.1e-05 Score=48.42 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=19.7
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHH
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVA 37 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la 37 (105)
..++.+++.||+|||||+++....
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHH
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHH
Confidence 357889999999999998766554
No 476
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.46 E-value=9.5e-05 Score=46.26 Aligned_cols=24 Identities=21% Similarity=0.384 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
...+++.|++|+|||+|++.+...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 457999999999999999999754
No 477
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.46 E-value=7.3e-05 Score=46.07 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
....+++.|++|+|||||++.+....
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 45679999999999999999998644
No 478
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.45 E-value=0.00011 Score=45.65 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
.-.+++.|++|+|||||++.+...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 347999999999999999999864
No 479
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.45 E-value=0.0001 Score=52.85 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=25.2
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
+..|..+.|+||+|+|||+|++.++.....
T Consensus 148 i~kGq~~~i~G~sGvGKTtL~~~l~~~~~~ 177 (473)
T 1sky_E 148 YIKGGKIGLFGGAGVGKTVLIQELIHNIAQ 177 (473)
T ss_dssp EETTCEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred hccCCEEEEECCCCCCccHHHHHHHhhhhh
Confidence 345778999999999999999999877653
No 480
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.45 E-value=8.9e-05 Score=46.87 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
..+++.|++|+|||||++.+....
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 479999999999999999988643
No 481
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.45 E-value=8.9e-05 Score=46.96 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
-.++++|++|+|||||++.++..
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999875
No 482
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.45 E-value=0.0001 Score=46.32 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
...++++|++|+|||||+..+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999854
No 483
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.44 E-value=0.00014 Score=45.38 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=20.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHH
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQ 38 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~ 38 (105)
..-.+++.|++|+|||+|++.+..
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 345799999999999999999863
No 484
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.44 E-value=0.0001 Score=53.23 Aligned_cols=27 Identities=30% Similarity=0.535 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
.++.++++|++|+||||++..||..+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356799999999999999999997664
No 485
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.44 E-value=7.2e-05 Score=50.39 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
...+.|.|+||+|||||++++...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 346999999999999999999865
No 486
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.44 E-value=8.4e-05 Score=46.70 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHH
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQ 38 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~ 38 (105)
...+++.|++|+|||||++.++.
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999874
No 487
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.43 E-value=0.00011 Score=46.42 Aligned_cols=25 Identities=32% Similarity=0.331 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
...+++.|++|+|||+|++.+....
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999998654
No 488
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.42 E-value=0.00013 Score=51.71 Aligned_cols=28 Identities=32% Similarity=0.351 Sum_probs=24.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCC
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSI 42 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~~~~~ 42 (105)
.++.++++|++|+||||++..+|..+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~ 126 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLRE 126 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999987754
No 489
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.42 E-value=9.7e-05 Score=45.86 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
...+++.|++|+|||+|++.+...
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999998753
No 490
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.42 E-value=0.00013 Score=45.69 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
-.+++.|++|+|||+|++.++..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999864
No 491
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.40 E-value=0.00012 Score=45.18 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=21.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHH
Q psy4924 15 WNRVVLLHGPPGTGKTSLCKAVAQ 38 (105)
Q Consensus 15 ~~~~ill~Gp~GsGKT~l~~~la~ 38 (105)
....+++.|++|+|||||++.+..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 355799999999999999999984
No 492
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.40 E-value=0.00011 Score=46.23 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQKL 40 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~~ 40 (105)
..+++.|++|+|||||++.+....
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHhcCC
Confidence 479999999999999999998643
No 493
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.39 E-value=0.0003 Score=45.77 Aligned_cols=26 Identities=31% Similarity=0.552 Sum_probs=23.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
...+++.|.+|+||||++..++..+.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999998876
No 494
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.39 E-value=6.1e-05 Score=46.24 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=10.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
.-.+++.|++|+|||||++.+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999998754
No 495
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.38 E-value=0.00018 Score=45.70 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=23.6
Q ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhC
Q psy4924 14 SWNRVVLLHGPPGTGKTSLCKAVAQKLS 41 (105)
Q Consensus 14 ~~~~~ill~Gp~GsGKT~l~~~la~~~~ 41 (105)
..++..+++||.|+||||.+..++....
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~ 33 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAK 33 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3467899999999999998888887763
No 496
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.38 E-value=0.00011 Score=46.08 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=20.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
.-.+++.|++|+|||||++.+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 347999999999999999998743
No 497
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.38 E-value=0.00013 Score=46.16 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 17 RVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 17 ~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
-.+++.|++|+|||||++.+...
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999998853
No 498
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.38 E-value=8.9e-05 Score=53.10 Aligned_cols=31 Identities=10% Similarity=0.151 Sum_probs=27.2
Q ss_pred ccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Q psy4924 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43 (105)
Q Consensus 13 ~~~~~~ill~Gp~GsGKT~l~~~la~~~~~~ 43 (105)
+..+..++|.|+||+|||+|+..+|......
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~ 269 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTA 269 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTT
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHh
Confidence 6678899999999999999999999877643
No 499
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.38 E-value=0.0001 Score=47.18 Aligned_cols=24 Identities=29% Similarity=0.671 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
...+++.|++|+|||||+..+...
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999998754
No 500
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.38 E-value=8.5e-05 Score=45.75 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHH
Q psy4924 16 NRVVLLHGPPGTGKTSLCKAVAQK 39 (105)
Q Consensus 16 ~~~ill~Gp~GsGKT~l~~~la~~ 39 (105)
.-.+++.|++|+|||||++.+...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999999854
Done!