RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4924
(105 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.8 bits (136), Expect = 5e-11
Identities = 22/95 (23%), Positives = 34/95 (35%), Gaps = 13/95 (13%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIF---FKKY--PNVLIFTTSNLTGAI 70
+ VL+ G G+GKT + V ++ + IF K P ++ L I
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 71 DLAFLDRADIKQYIGFPSAAAIFNIFSSCVEELKR 105
D + R+D I S EL+R
Sbjct: 210 DPNWTSRSDHSSNIKLR--------IHSIQAELRR 236
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 50.9 bits (122), Expect = 5e-09
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44
+ R +LL+GPPGTGKT + +AVA +
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFF 266
Score = 45.6 bits (108), Expect = 4e-07
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 19 VLLHGPPGTGKTSLCKAVA 37
VL +GPPG GKT L KA+A
Sbjct: 514 VLFYGPPGCGKTLLAKAIA 532
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding,
nucleotide-binding, HY; HET: ADP; 3.11A
{Methanocaldococcus jannaschii}
Length = 285
Score = 47.6 bits (114), Expect = 7e-08
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 5/40 (12%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLS---IRLQTPQAIFFKKY 55
+LL+GPPGTGKT L KAVA + + IR+ + KK+
Sbjct: 54 ILLYGPPGTGKTLLAKAVATETNATFIRVVGSE--LVKKF 91
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic;
photosynthesis, rubisco activase, AAA+ protein; 2.95A
{Nicotiana tabacum} PDB: 3zw6_A
Length = 293
Score = 46.7 bits (111), Expect = 1e-07
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSI 42
+ + G G GK+ C+ V +K+ I
Sbjct: 39 LGIWGGKGQGKSFQCELVFRKMGI 62
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein;
HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A*
1e32_A* 1s3s_A* 2pjh_B
Length = 489
Score = 45.6 bits (108), Expect = 4e-07
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRL 44
+LL+GPPGTGKT + +AVA +
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFF 266
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48, ATP-binding, lipid-binding, nucle binding,
nucleus, phosphoprotein, transport; HET: ADP; 3.00A
{Mus musculus}
Length = 301
Score = 44.9 bits (107), Expect = 5e-07
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 19 VLLHGPPGTGKTSLCKAVA 37
VL +GPPG GKT L KA+A
Sbjct: 52 VLFYGPPGCGKTLLAKAIA 70
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A
{Homo sapiens}
Length = 274
Score = 44.5 bits (106), Expect = 7e-07
Identities = 15/19 (78%), Positives = 15/19 (78%)
Query: 19 VLLHGPPGTGKTSLCKAVA 37
VLL GPPG GKT L KAVA
Sbjct: 47 VLLAGPPGCGKTLLAKAVA 65
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 44.9 bits (106), Expect = 7e-07
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKL 40
R +L+GPPG GKT+ VAQ+L
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQEL 101
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain,
ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus}
SCOP: c.37.1.20 PDB: 1nsf_A*
Length = 272
Score = 44.7 bits (106), Expect = 7e-07
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLS---IRLQTP 47
VLL GPP +GKT+L +A++ + I++ +P
Sbjct: 67 VLLEGPPHSGKTALAAKIAEESNFPFIKICSP 98
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding,
nucleotide-binding, hydrolase; 2.70A {Drosophila
melanogaster}
Length = 297
Score = 44.2 bits (105), Expect = 9e-07
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 17 RVVLLHGPPGTGKTSLCKAVA 37
+ +LL GPPG GKT L +AVA
Sbjct: 55 KGLLLFGPPGNGKTLLARAVA 75
Score = 26.1 bits (58), Expect = 2.4
Identities = 7/48 (14%), Positives = 19/48 (39%)
Query: 57 NVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEELK 104
+++ +N +D A L R + Y+ P + + +++
Sbjct: 159 RIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQG 206
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo
sapiens}
Length = 389
Score = 44.4 bits (105), Expect = 1e-06
Identities = 15/21 (71%), Positives = 16/21 (76%)
Query: 17 RVVLLHGPPGTGKTSLCKAVA 37
R +LL GPPG GKT L KAVA
Sbjct: 149 RGLLLFGPPGNGKTMLAKAVA 169
Score = 27.5 bits (61), Expect = 0.90
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 57 NVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIF 96
VL+ +N +D A L R + Y+ P+ +
Sbjct: 252 RVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLL 291
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase,
ATP-binding cassette, ATP-binding, endosome, MEM
nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
PDB: 3eih_A* 2rko_A 3mhv_C
Length = 322
Score = 43.9 bits (104), Expect = 1e-06
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 17 RVVLLHGPPGTGKTSLCKAVA 37
+LL+GPPGTGK+ L KAVA
Sbjct: 52 SGILLYGPPGTGKSYLAKAVA 72
Score = 28.9 bits (65), Expect = 0.25
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 57 NVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEELK 104
VL+ +N+ +D A R + + YI P AA +F V +
Sbjct: 154 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTP 201
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural
genomics consortium, ATP- hydrolase, magnesium,
metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo
sapiens}
Length = 357
Score = 44.0 bits (104), Expect = 1e-06
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 17 RVVLLHGPPGTGKTSLCKAVA 37
+ +LL GPPGTGKT + K +A
Sbjct: 118 KGILLFGPPGTGKTLIGKCIA 138
Score = 28.2 bits (63), Expect = 0.49
Identities = 12/40 (30%), Positives = 17/40 (42%)
Query: 57 NVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIF 96
+L+ +N ID A R + YI P A+A I
Sbjct: 221 RILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIV 260
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo
sapiens}
Length = 322
Score = 43.9 bits (104), Expect = 1e-06
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 17 RVVLLHGPPGTGKTSLCKAVA 37
R +LL GPPGTGK+ L KAVA
Sbjct: 46 RGILLFGPPGTGKSYLAKAVA 66
Score = 28.9 bits (65), Expect = 0.23
Identities = 10/48 (20%), Positives = 20/48 (41%)
Query: 57 NVLIFTTSNLTGAIDLAFLDRADIKQYIGFPSAAAIFNIFSSCVEELK 104
+L+ +N+ +D A R + + YI P A +F + +
Sbjct: 149 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQ 196
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A
{Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB:
2cea_A* 3kds_E*
Length = 476
Score = 43.3 bits (103), Expect = 3e-06
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 19 VLLHGPPGTGKTSLCKAVA 37
+LL GPPGTGKT L +AVA
Sbjct: 52 ILLVGPPGTGKTLLARAVA 70
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET:
ADP; 3.90A {Thermus thermophilus}
Length = 499
Score = 43.0 bits (102), Expect = 3e-06
Identities = 14/19 (73%), Positives = 15/19 (78%)
Query: 19 VLLHGPPGTGKTSLCKAVA 37
VLL GPPG GKT L +AVA
Sbjct: 67 VLLVGPPGVGKTHLARAVA 85
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 42.0 bits (98), Expect = 4e-06
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIR 43
++LL G PG+GK+++ +A+A +
Sbjct: 10 NILLLSGHPGSGKSTIAEALANLPGVP 36
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for
structural genomics, JCSG; HET: MSE; 1.70A
{Chloroflexus aurantiacus}
Length = 193
Score = 41.5 bits (97), Expect = 8e-06
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRL 44
++++ G P TGKT+L +A+A L + L
Sbjct: 6 ALIIVTGHPATGKTTLSQALATGLRLPL 33
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding,
cell CELL division, hydrolase, membrane, metal-binding;
3.30A {Helicobacter pylori} PDB: 2r65_A*
Length = 268
Score = 41.5 bits (98), Expect = 9e-06
Identities = 16/19 (84%), Positives = 16/19 (84%)
Query: 19 VLLHGPPGTGKTSLCKAVA 37
VLL GPPGTGKT L KAVA
Sbjct: 47 VLLVGPPGTGKTLLAKAVA 65
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 40.7 bits (95), Expect = 1e-05
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42
++ ++ GP G GK++ CK +A +L
Sbjct: 2 KKLYIITGPAGVGKSTTCKRLAAQLDN 28
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics,
structural G consortium, SGC, ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo
sapiens}
Length = 262
Score = 40.3 bits (95), Expect = 2e-05
Identities = 14/19 (73%), Positives = 14/19 (73%)
Query: 19 VLLHGPPGTGKTSLCKAVA 37
LL GPPG GKT L KAVA
Sbjct: 42 ALLLGPPGCGKTLLAKAVA 60
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A
{Escherichia coli} SCOP: c.37.1.20
Length = 257
Score = 40.4 bits (95), Expect = 2e-05
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 19 VLLHGPPGTGKTSLCKAVA 37
VL+ GPPGTGKT L KA+A
Sbjct: 48 VLMVGPPGTGKTLLAKAIA 66
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB:
1iy0_A* 1iy1_A*
Length = 254
Score = 40.4 bits (95), Expect = 2e-05
Identities = 14/19 (73%), Positives = 15/19 (78%)
Query: 19 VLLHGPPGTGKTSLCKAVA 37
VLL GPPG GKT L +AVA
Sbjct: 52 VLLVGPPGVGKTHLARAVA 70
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
chromatin regulator, growth regulation, hydrolase,
nuclear protein, DNA recombination; HET: ADP; 2.2A
{Homo sapiens} PDB: 2xsz_A*
Length = 456
Score = 40.4 bits (94), Expect = 3e-05
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40
R VLL GPPGTGKT+L A+AQ+L
Sbjct: 63 GRAVLLAGPPGTGKTALALAIAQEL 87
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
3.20A {Thermus thermophilus} SCOP: c.37.1.20
Length = 278
Score = 40.0 bits (94), Expect = 3e-05
Identities = 14/19 (73%), Positives = 15/19 (78%)
Query: 19 VLLHGPPGTGKTSLCKAVA 37
VLL GPPG GKT L +AVA
Sbjct: 76 VLLVGPPGVGKTHLARAVA 94
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 39.7 bits (92), Expect = 3e-05
Identities = 9/80 (11%), Positives = 23/80 (28%), Gaps = 2/80 (2%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIR-LQTPQAIFFKKYPNVLIFTTSNLTGAIDLAF 74
R+++L+G GK+ + + + L L + P + + D
Sbjct: 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGV 62
Query: 75 LDRADIKQ-YIGFPSAAAIF 93
+ + +
Sbjct: 63 SIGPEFRALEGAWAEGVVAM 82
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 38.9 bits (91), Expect = 6e-05
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 11/59 (18%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAFLDR 77
+ LHG G GKT L A+A +L+ K+ + LI L + + D+
Sbjct: 57 LYLHGSFGVGKTYLLAAIANELA-----------KRNVSSLIVYVPELFRELKHSLQDQ 104
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta
domain, C-terminal helix, ATP-binding, E
nucleotide-binding; 2.90A {Saccharomyces cerevisiae}
PDB: 2qpa_A*
Length = 355
Score = 39.0 bits (91), Expect = 6e-05
Identities = 32/150 (21%), Positives = 45/150 (30%), Gaps = 62/150 (41%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQK-----LSI------------------------RLQTP 47
+LL+GPPGTGK+ L KAVA + S+ R P
Sbjct: 85 SGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKP 144
Query: 48 QAIFF---------------------------------KKYPNVLIFTTSNLTGAIDLAF 74
IF VL+ +N+ +D A
Sbjct: 145 SIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAI 204
Query: 75 LDRADIKQYIGFPSAAAIFNIFSSCVEELK 104
R + + YI P AA +F V +
Sbjct: 205 RRRFERRIYIPLPDLAARTTMFEINVGDTP 234
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATPase, ATP-binding,
nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus
fulgidus}
Length = 226
Score = 38.7 bits (91), Expect = 8e-05
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 20 LLHGPPGTGKTSLCKAVAQKL 40
L GPPGTGKT+ A+A+ L
Sbjct: 42 LFSGPPGTGKTATAIALARDL 62
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide,
hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP:
a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Length = 324
Score = 38.7 bits (91), Expect = 8e-05
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQT 46
+LL GPPG GKT+L +A +L + L+
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNLRV 68
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 38.6 bits (89), Expect = 9e-05
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLS 41
+L+ G PGTGKTS+ + +A +L
Sbjct: 13 ILITGTPGTGKTSMAEMIAAELD 35
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATP ATP-binding,
nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus
fulgidus} PDB: 2chv_A
Length = 319
Score = 38.5 bits (90), Expect = 1e-04
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 20 LLHGPPGTGKTSLCKAVAQKL 40
L GPPGTGKT+ A+A+ L
Sbjct: 42 LFSGPPGTGKTATAIALARDL 62
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase,
winged-helix domain, ATP hydrolysis, walker A, walker
B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga
maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A*
1in8_A* 1in7_A* 1j7k_A*
Length = 334
Score = 38.7 bits (91), Expect = 1e-04
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQT 46
VLL GPPG GKT+L +A +L +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHV 81
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta
proteins (A/B), protein binding, transferase,
phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB:
3iik_A 3iil_A* 3iim_A* 1rkb_A
Length = 180
Score = 38.1 bits (88), Expect = 1e-04
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Query: 1 MKFSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKK 54
+ + NI+ L G PG GKT+L K +A K ++ + ++
Sbjct: 3 LGSPEFMLLPNIL-------LTGTPGVGKTTLGKELASKSGLKYINVGDLAREE 49
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA
ATPase, ATP-binding, coiled coil, membrane,
nucleotide-binding, phosphorylation; HET: ATP; 3.00A
{Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A
2jq9_A 2k3w_A 1yxr_A
Length = 444
Score = 38.8 bits (90), Expect = 1e-04
Identities = 32/151 (21%), Positives = 45/151 (29%), Gaps = 63/151 (41%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQK------LSI------------------------RLQT 46
R +LL GPPGTGK+ L KAVA + SI R
Sbjct: 168 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK 227
Query: 47 PQAIFF---------------------------------KKYPNVLIFTTSNLTGAIDLA 73
P IF +L+ +N+ +D A
Sbjct: 228 PSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSA 287
Query: 74 FLDRADIKQYIGFPSAAAIFNIFSSCVEELK 104
R + + YI P A A +F + +
Sbjct: 288 IRRRFEKRIYIPLPEAHARAAMFRLHLGSTQ 318
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP,
replication; HET: ADP; 2.80A {Pyrococcus furiosus}
SCOP: a.80.1.1 c.37.1.20
Length = 327
Score = 38.1 bits (89), Expect = 1e-04
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 20 LLHGPPGTGKTSLCKAVAQKL 40
L GPPG GKT+ A+A++L
Sbjct: 50 LFAGPPGVGKTTAALALAREL 70
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable
holliday junction DNA helicase; HET: ADP; 2.69A
{Campylobacter jejuni subsp}
Length = 338
Score = 37.9 bits (89), Expect = 2e-04
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQT 46
+L GP G GKT+L ++ ++S ++T
Sbjct: 58 ILFSGPAGLGKTTLANIISYEMSANIKT 85
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 37.4 bits (86), Expect = 3e-04
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLS 41
L G GTGKT + K + ++
Sbjct: 48 NLFLGLTGTGKTFVSKYIFNEIE 70
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 36.9 bits (85), Expect = 3e-04
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQ 45
+++ G PG GKT+L K + ++L R
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAI 29
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 37.1 bits (86), Expect = 3e-04
Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 20/81 (24%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAFLDRA 78
+ L+G G GK+ L A+A +LS + + +
Sbjct: 155 LYLYGDMGIGKSYLLAAMAHELSEKKGVS----------TTLLHFPSFA----------I 194
Query: 79 DIKQYIGFPSAAAIFNIFSSC 99
D+K I S + +
Sbjct: 195 DVKNAISNGSVKEEIDAVKNV 215
>3pvs_A Replication-associated recombination protein A; maintenance of
genome stability Pro recombination; 2.50A {Escherichia
coli}
Length = 447
Score = 37.1 bits (87), Expect = 3e-04
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIF 51
++L GPPGTGKT+L + +A+ + ++ A+
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISAVT 85
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 37.0 bits (85), Expect = 4e-04
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLS 41
+ ++G GTGKT++ K V KL
Sbjct: 48 IFIYGLTGTGKTAVVKFVLSKLH 70
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control
factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP:
a.4.5.11 c.37.1.20
Length = 389
Score = 37.1 bits (85), Expect = 4e-04
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKL 40
L G PGTGKT + + +
Sbjct: 47 ATLLGRPGTGKTVTLRKLWELY 68
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman
fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Length = 500
Score = 36.6 bits (85), Expect = 5e-04
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLS 41
V L GPPG K+ + + +
Sbjct: 44 VFLLGPPGIAKSLIARRLKFAFQ 66
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase,
nucleotide-binding, Pro serine protease, stress
response; HET: ADP; 3.40A {Bacillus subtilis} PDB:
1x37_A
Length = 543
Score = 36.7 bits (86), Expect = 5e-04
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 6/31 (19%)
Query: 7 KVKSNIISWNRVVLLHGPPGTGKTSLCKAVA 37
+K I+ L GPPG GKTSL K++A
Sbjct: 105 SLKGPIL------CLAGPPGVGKTSLAKSIA 129
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 36.1 bits (83), Expect = 6e-04
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 8/62 (12%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAFLD 76
++ ++GP G GKT + ++L P + F+ P + LT +
Sbjct: 6 PIIWINGPFGVGKTHTAHTLHERL------PGSFVFE--PEEMGQALRKLTPGFSGDPQE 57
Query: 77 RA 78
Sbjct: 58 HP 59
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 36.3 bits (84), Expect = 8e-04
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLS-IRLQTPQAIFF 52
V ++G G GK+ L + S + + +
Sbjct: 148 GWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHW 184
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2
function project, S2F, unknown function; HET: ADP;
1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB:
1fl9_A
Length = 158
Score = 35.7 bits (83), Expect = 8e-04
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIR 43
+V L+G G GKT+L + + Q + +
Sbjct: 35 MVYLNGDLGAGKTTLTRGMLQGIGHQ 60
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann,
hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 35.5 bits (81), Expect = 0.001
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKL 40
R V L GPPG GKT+L ++ L
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVL 25
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 35.1 bits (81), Expect = 0.001
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKL 40
+++L G PG+GK++ + K
Sbjct: 3 KIILTIGCPGSGKSTWAREFIAKN 26
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein,
ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus
radiodurans} PDB: 3gp8_A 3gpl_A*
Length = 574
Score = 35.5 bits (82), Expect = 0.001
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQ-----KLSIRLQTP 47
+R+V+L G PGTGK++ KAVA L + L P
Sbjct: 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP 240
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme
function initiative, EFI, STRU genomics, transferase;
1.60A {Janibacter SP}
Length = 200
Score = 35.1 bits (80), Expect = 0.002
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRL 44
R V++ G G+GKT++ VA + +
Sbjct: 30 RHVVVMGVSGSGKTTIAHGVADETGLEF 57
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding;
HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 34.7 bits (80), Expect = 0.002
Identities = 11/59 (18%), Positives = 18/59 (30%), Gaps = 10/59 (16%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAFLDR 77
+ G PG GKT L A + + + F T +L + +
Sbjct: 41 LTFVGSPGVGKTHLAVATLKAIYEKKGIR----------GYFFDTKDLIFRLKHLMDEG 89
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 35.1 bits (80), Expect = 0.002
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKL 40
+++L G PG+GK++ + K
Sbjct: 3 KIILTIGCPGSGKSTWAREFIAKN 26
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus
P2}
Length = 235
Score = 35.0 bits (81), Expect = 0.002
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 16 NRVVLLHGPPGTGKTSLC 33
+ L G PGTGKT
Sbjct: 23 GFFIALTGEPGTGKTIFS 40
>2jlq_A Serine protease subunit NS3; ribonucleoprotein,
nucleotide-binding, viral nucleoprotein, endoplasmic
reticulum, helicase, hydrolase; 1.67A {Dengue virus 4}
PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A*
2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Length = 451
Score = 34.8 bits (80), Expect = 0.002
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 6 SKVKSNIISWNRVVLLHGPPGTGKT 30
+V +I R+ ++ PG GKT
Sbjct: 9 YEVDEDIFRKKRLTIMDLHPGAGKT 33
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 34.7 bits (80), Expect = 0.002
Identities = 11/18 (61%), Positives = 11/18 (61%)
Query: 16 NRVVLLHGPPGTGKTSLC 33
VVLL G PGTGKT
Sbjct: 23 RNVVLLSGGPGTGKTIFS 40
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 34.6 bits (79), Expect = 0.002
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIR 43
N+VV++ G PG G T+ + L
Sbjct: 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKE 30
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP
binding motif, ATP- binding, nucleotide-binding,
transferase; HET: ADP; 1.79A {Methanocaldococcus
jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A*
3adb_A*
Length = 260
Score = 34.5 bits (79), Expect = 0.002
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIR 43
+++L G PG GK++ K +A+ LS
Sbjct: 6 LIILTGLPGVGKSTFSKNLAKILSKN 31
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding,
nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A
{Thermococcus onnurineus}
Length = 604
Score = 34.3 bits (79), Expect = 0.003
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIR-LQTPQAIFFKKYPNV 58
R VLL G PGTGK+ L +A+A+ L L+ + N+
Sbjct: 60 KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENM 103
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A
{Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB:
1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Length = 334
Score = 34.3 bits (79), Expect = 0.003
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 20 LLHGPPGTGKTSLCKAVAQKL 40
L+ PG G +L A+++ L
Sbjct: 28 LIQALPGMGDDALIYALSRYL 48
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 34.1 bits (78), Expect = 0.004
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 16 NRVVLLHGPPGTGKTSLC 33
R L+ G GTGKT
Sbjct: 39 GRSTLVSGTSGTGKTLFS 56
Score = 33.0 bits (75), Expect = 0.011
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIR 43
++L G GTGKT L +
Sbjct: 282 SIILATGATGTGKTLLVSRFVENACAN 308
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation,
nucleotide metab transferase; HET: C5P; 1.50A {Thermus
thermophilus} PDB: 3akc_A* 3akd_A*
Length = 208
Score = 33.6 bits (78), Expect = 0.005
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 23 GPPGTGKTSLCKAVAQKLSIRL 44
GP +GK+S+ + VA L +
Sbjct: 9 GPSASGKSSVARRVAAALGVPY 30
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 33.6 bits (76), Expect = 0.005
Identities = 8/36 (22%), Positives = 19/36 (52%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFF 52
++ ++ G PG GK+++ V + L + + I +
Sbjct: 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINY 37
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 33.9 bits (77), Expect = 0.005
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 7 KVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKL 40
V I V ++GP GTG T+L K + + L
Sbjct: 36 IVMKAIKEKKHHVTINGPAGTGATTLTKFIIEAL 69
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding
loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori}
SCOP: c.37.1.20
Length = 376
Score = 33.8 bits (78), Expect = 0.006
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 11/42 (26%)
Query: 9 KSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAI 50
KSNI LL GP G+GKT + AQ L+ L P AI
Sbjct: 72 KSNI-------LLIGPTGSGKTLM----AQTLAKHLDIPIAI 102
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop,
rossman fold, AAA+, photosynthesis, metal transport;
2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB:
2x31_G
Length = 350
Score = 33.6 bits (77), Expect = 0.006
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 19 VLLHGPPGTGKTSLCKAVA 37
VL+ G GTGK++ +A+A
Sbjct: 48 VLVFGDRGTGKSTAVRALA 66
>2r44_A Uncharacterized protein; putative ATPase, structural genomics,
joint center for struc genomics, JCSG; HET: MSE PG4;
2.00A {Cytophaga hutchinsonii atcc 33406}
Length = 331
Score = 33.7 bits (78), Expect = 0.006
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSI---RLQ-TP 47
+LL G PG KT +A+ + + R+Q TP
Sbjct: 49 ILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTP 81
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 33.3 bits (76), Expect = 0.006
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 16 NRVVLLHGPPGTGKTSLC 33
VLL G GTGKT+
Sbjct: 30 GTTVLLTGGTGTGKTTFA 47
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+
molecular machine, hexamer, asymmetric,, ATP-BIN
chaperone, metal-binding; HET: ADP; 3.25A {Escherichia
coli} PDB: 3hte_A
Length = 363
Score = 33.3 bits (77), Expect = 0.006
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 11/42 (26%)
Query: 9 KSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAI 50
KSNI LL GP G+GKT L A+ L+ L P +
Sbjct: 51 KSNI-------LLIGPTGSGKTLL----AETLARLLDVPFTM 81
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 33.7 bits (77), Expect = 0.006
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 12 IISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41
+S +R ++L GPPG+GKT + +
Sbjct: 1300 WLSEHRPLILCGPPGSGKTMTLTSTLRAFP 1329
Score = 27.9 bits (62), Expect = 0.67
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 23 GPPGTGKTSLCKAVAQKLSI 42
GP GTGKT KA+ +L
Sbjct: 611 GPAGTGKTETVKALGSQLGR 630
Score = 24.5 bits (53), Expect = 8.6
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAFLDRA 78
V++ GP G GKT+ + + + ++ ++ P + T L G++DL +
Sbjct: 909 VMMVGPSGGGKTTSWEVYLEAIE-QVDNIKSEAHVMDPKAI--TKDQLFGSLDLTTREWT 965
Query: 79 D 79
D
Sbjct: 966 D 966
>3r20_A Cytidylate kinase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, ADP,
DCMP, D transferase; 2.00A {Mycobacterium smegmatis}
PDB: 3r8c_A 4die_A*
Length = 233
Score = 33.2 bits (77), Expect = 0.006
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 23 GPPGTGKTSLCKAVAQKLSIRL 44
GP GTGK+S+ + +A+ L R
Sbjct: 16 GPAGTGKSSVSRGLARALGARY 37
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 354
Score = 33.3 bits (76), Expect = 0.007
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKL 40
+LL+GP GTGK + C A+ + +
Sbjct: 39 LLLYGPNGTGKKTRCMALLESI 60
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase,
transferase; NMR {Streptococcus pneumoniae} SCOP:
c.37.1.1
Length = 236
Score = 33.2 bits (77), Expect = 0.007
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 23 GPPGTGKTSLCKAVAQKLSIRL 44
GP +GK+++ K +A+
Sbjct: 23 GPASSGKSTVAKIIAKDFGFTY 44
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 32.8 bits (75), Expect = 0.008
Identities = 5/26 (19%), Positives = 15/26 (57%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIR 43
+++L GP K+++ ++++L
Sbjct: 3 LIILEGPDCCFKSTVAAKLSKELKYP 28
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 33.1 bits (75), Expect = 0.009
Identities = 10/47 (21%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 1 MKFSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTP 47
++ ++++ N + V+L G PG+GK+++ + + Q ++ + T
Sbjct: 12 LQLLDNRIEDN---YRVCVILVGSPGSGKSTIAEELCQIINEKYHTF 55
Score = 30.0 bits (67), Expect = 0.096
Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 10 SNIISWNR-VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAI 50
S + S N + GT AV +++ +I
Sbjct: 112 SALTSNNEECTAVVARGGTANAIRIAAVDNPVNVNKLAQDSI 153
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA
translocation, nucleotide-binding, DNA-binding; 3.00A
{Bovine papillomavirus type 1} PDB: 2gxa_A*
Length = 305
Score = 33.0 bits (75), Expect = 0.011
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKL 40
+ GPP TGK+ LC ++ L
Sbjct: 127 NCLAFIGPPNTGKSMLCNSLIHFL 150
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus
thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Length = 311
Score = 32.5 bits (75), Expect = 0.011
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 23 GPPGTGKTSLCKAVAQKL 40
GP G GKT L K +A L
Sbjct: 54 GPTGVGKTELAKTLAATL 71
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase;
HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP:
c.37.1.20 PDB: 1s9h_A
Length = 267
Score = 32.6 bits (74), Expect = 0.012
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKL 40
+ L GP TGKT++ +A+A +
Sbjct: 101 FGKRNTIWLFGPATTGKTNIAEAIAHTV 128
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian
virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A
2h1l_A
Length = 377
Score = 32.7 bits (74), Expect = 0.012
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLS 41
R L GP +GKT+L A+ +
Sbjct: 170 RYWLFKGPIDSGKTTLAAALLELCG 194
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide
monophosphate kinase,, transferase; 1.75A {Escherichia
coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A*
1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Length = 227
Score = 32.4 bits (75), Expect = 0.013
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 23 GPPGTGKTSLCKAVAQKLSIRL 44
GP G GK +LCKA+A+ L L
Sbjct: 12 GPSGAGKGTLCKAMAEALQWHL 33
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4;
2.30A {Staphylococcus aureus}
Length = 219
Score = 32.4 bits (75), Expect = 0.013
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 23 GPPGTGKTSLCKAVAQKLSIRL 44
GP GK+++ K VA +LS+
Sbjct: 10 GPAAAGKSTIAKRVASELSMIY 31
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10
PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 32.4 bits (73), Expect = 0.014
Identities = 9/56 (16%), Positives = 20/56 (35%), Gaps = 6/56 (10%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQ------KLSIRLQTPQAIFFKKYPNVLIFTTSNLT 67
+V+ G G+GKT+L + K++ P++ + +
Sbjct: 16 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVE 71
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein
structure initiati YORK structural genomics research
consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 32.4 bits (73), Expect = 0.014
Identities = 7/24 (29%), Positives = 16/24 (66%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKL 40
+++ G G+GK+S+ +A+A+
Sbjct: 19 GSIVVMGVSGSGKSSVGEAIAEAC 42
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 32.3 bits (73), Expect = 0.015
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42
+ + +L G G+GK+++ VA +L
Sbjct: 8 HHIYVLMGVSGSGKSAVASEVAHQLHA 34
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 32.5 bits (75), Expect = 0.015
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 23 GPPGTGKTSLCKAVAQKL 40
GP G GKT L K +A L
Sbjct: 595 GPTGVGKTELAKTLAATL 612
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 32.2 bits (72), Expect = 0.018
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40
N++ + + K L V +L
Sbjct: 45 NKLFYITNADDSTKFQLVNDVMDEL 69
>2v1u_A Cell division control protein 6 homolog; DNA replication,
nucleotide-binding, replication, archaea; HET: ADP;
3.10A {Aeropyrum pernix}
Length = 387
Score = 32.1 bits (72), Expect = 0.019
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSN 65
LL+G GTGKT++ + V ++L R + + Y N T
Sbjct: 47 ALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPY 93
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 32.1 bits (72), Expect = 0.021
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTP 47
+VVL+ G PG GKT + + P
Sbjct: 162 KVVLVDGVPGCGKTKEILSRVNFEEDLILVP 192
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay,
zinc-finger, ATP-binding, metal-BIN UPF2, UPF1,
helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A
2iyk_A
Length = 800
Score = 31.8 bits (72), Expect = 0.024
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 12/56 (21%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAID 71
+ L+ GPPGTGKT + L+ + VL+ SN+ A+D
Sbjct: 371 RPLSLIQGPPGTGKTVTSATIVYHLARQGN----------GPVLVCAPSNI--AVD 414
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 353
Score = 31.7 bits (72), Expect = 0.024
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKL 40
+L +GPPGTGKTS A+ ++L
Sbjct: 61 MLFYGPPGTGKTSTILALTKEL 82
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid
biosynthesis, P-loop kinase, metal- binding, shikimate
pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis}
SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A*
2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A*
1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A*
3baf_A*
Length = 184
Score = 31.4 bits (72), Expect = 0.024
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIR 43
+L G PG+GK+++ + +A+ L +
Sbjct: 2 APKAVLVGLPGSGKSTIGRRLAKALGVG 29
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein,
calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides}
PDB: 3syk_A 3zuh_A*
Length = 309
Score = 32.0 bits (72), Expect = 0.024
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 20 LLHGPPGTGKTSLCKAVAQKLS 41
G PGTGKT++ +A L
Sbjct: 71 SFTGNPGTGKTTVALKMAGLLH 92
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 31.6 bits (72), Expect = 0.026
Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 22/93 (23%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSN--LTGAIDLAF 74
++V L G PG+GK++L +A LS + + L D
Sbjct: 23 QLVALSGAPGSGKSTLSNPLAAALS-----------AQGLPAEVVPMDGFHL----DNRL 67
Query: 75 LDRADIKQYIGFPSAAAIFNI--FSSCVEELKR 105
L+ + G P F+ F LK
Sbjct: 68 LEPRGLLPRKGAPET---FDFEGFQRLCHALKH 97
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET:
DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11
PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Length = 296
Score = 31.5 bits (72), Expect = 0.028
Identities = 4/33 (12%), Positives = 13/33 (39%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIF 51
+++ G GK++ + A + + +
Sbjct: 38 IMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLA 70
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE;
1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Length = 175
Score = 31.4 bits (72), Expect = 0.030
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 7/37 (18%)
Query: 7 KVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43
+ NI+ G G+GK++L +A+A+ L +
Sbjct: 2 SLAKNIV-------FIGFMGSGKSTLARALAKDLDLV 31
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane,
nucleotide-binding, RNA replication, transmembrane,
viral protein; 1.80A {Japanese encephalitis virus} PDB:
2v8o_A 2qeq_A
Length = 459
Score = 31.7 bits (72), Expect = 0.030
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 11 NIISWNRVVLLHGPPGTGKT 30
N++ ++ +L PG+GKT
Sbjct: 16 NMLRKRQMTVLDLHPGSGKT 35
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A
{Coxiella burnetii}
Length = 185
Score = 31.0 bits (71), Expect = 0.034
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 7/37 (18%)
Query: 7 KVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43
K +NI L G G GKTS+ +A+
Sbjct: 3 KNLTNIY-------LIGLMGAGKTSVGSQLAKLTKRI 32
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD,
hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A*
2gk7_A 2xzo_A* 2xzp_A
Length = 624
Score = 31.3 bits (71), Expect = 0.036
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 12/56 (21%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAID 71
+ L+ GPPGTGKT + L+ + VL+ SN+ A+D
Sbjct: 195 RPLSLIQGPPGTGKTVTSATIVYHLARQGN----------GPVLVCAPSNI--AVD 238
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic
subunit]; helicase, flavivirus, DEAD-BOX, ATPase,
rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP:
c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Length = 440
Score = 31.3 bits (71), Expect = 0.040
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 10 SNIISWNRVVLLHGPPGTGKT 30
S+++ +L PG GKT
Sbjct: 2 SHMLKKGMTTVLDFHPGAGKT 22
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway,
P-loop protein, transferase; 1.8A {Erwinia
chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Length = 173
Score = 31.0 bits (71), Expect = 0.040
Identities = 6/28 (21%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIR 43
+ ++ G G G T++ + +A+ L
Sbjct: 3 EPIFMV-GARGCGMTTVGRELARALGYE 29
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding
protein; 2.30A {Archaeoglobus fulgidus}
Length = 221
Score = 31.0 bits (71), Expect = 0.041
Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 4/24 (16%)
Query: 23 GPPGTGKTSL----CKAVAQKLSI 42
G G+GKT L + + ++ I
Sbjct: 37 GAIGSGKTLLIERTIERIGNEVKI 60
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding
mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli}
SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Length = 758
Score = 31.1 bits (71), Expect = 0.042
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 23 GPPGTGKTSLCKAVAQKLSIRL 44
GP G GKT + +++ L I L
Sbjct: 495 GPTGVGKTEVTVQLSKALGIEL 516
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA
replication initiation, DNA BIND protein, AAA+ ATPase;
HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11
c.37.1.20 PDB: 1w5t_A*
Length = 412
Score = 31.0 bits (69), Expect = 0.044
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
Query: 1 MKFSHSKVKSNIISWNRVVLL--HGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNV 58
+ +++ S + ++ G G GKT+L K +++S + Y N
Sbjct: 35 ARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNA 94
Query: 59 LIFTTS 64
Sbjct: 95 FNAPNL 100
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 340
Score = 30.9 bits (70), Expect = 0.047
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKL 40
+L +GPPGTGKTS A+A+++
Sbjct: 49 LLFYGPPGTGKTSTIVALAREI 70
>2cvh_A DNA repair and recombination protein RADB; filament formation,
homologous recombination, ATPase domain,
hyperthermophIle; HET: DNA; 2.20A {Thermococcus
kodakarensis} PDB: 2cvf_A*
Length = 220
Score = 30.6 bits (70), Expect = 0.048
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 18 VVLLHGPPGTGKTSLC 33
+ ++GP +GKT+L
Sbjct: 22 LTQVYGPYASGKTTLA 37
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 30.8 bits (69), Expect = 0.050
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIR 43
+VLL G GK+S+CK V +
Sbjct: 1 MVLLMGVRRCGKSSICKVVFHNMQPL 26
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 30.7 bits (70), Expect = 0.051
Identities = 8/24 (33%), Positives = 10/24 (41%), Gaps = 4/24 (16%)
Query: 23 GPPGTGKTSL----CKAVAQKLSI 42
G G+GKT L + K I
Sbjct: 45 GAIGSGKTLLIEKLIDNLKDKYKI 68
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI,
protein structure initiative; 2.05A {Escherichia coli}
SCOP: c.37.1.2
Length = 173
Score = 30.6 bits (70), Expect = 0.051
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 7/37 (18%)
Query: 7 KVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43
K NI L GP G GK+++ + +AQ+L++
Sbjct: 2 AEKRNIF-------LVGPMGAGKSTIGRQLAQQLNME 31
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 30.8 bits (69), Expect = 0.054
Identities = 8/24 (33%), Positives = 10/24 (41%), Gaps = 4/24 (16%)
Query: 18 VVLLHGPPGTGKT----SLCKAVA 37
V L P G GK+ L +A
Sbjct: 32 VGALVSPGGAGKSMLALQLAAQIA 55
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure
initiative, midwest CENT structural genomics, MCSG;
2.79A {Clostridium symbiosum atcc 14940}
Length = 223
Score = 30.5 bits (68), Expect = 0.064
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44
N ++ + G+G + K +A++L I
Sbjct: 14 NLIITIEREYGSGGRIVGKKLAEELGIHF 42
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 30.7 bits (70), Expect = 0.064
Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 17/87 (19%)
Query: 10 SNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGA 69
I+ VV + GP GTGKT+ K +A +L PN N +
Sbjct: 111 LPIVKDGMVVGIVGPNGTGKTTAVKILAGQLI--------------PN---LCEDNDSWD 153
Query: 70 IDLAFLDRADIKQYIGFPSAAAIFNIF 96
+ +++ Y I +
Sbjct: 154 NVIRAFRGNELQNYFERLKNGEIRPVV 180
Score = 25.3 bits (56), Expect = 4.5
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKL 40
+ ++ GP G GKT+ K +A
Sbjct: 384 VIGIV-GPNGIGKTTFVKMLAGVE 406
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin
biosynthesis; HET: DST AMP; 2.10A {Agrobacterium
tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Length = 253
Score = 30.6 bits (69), Expect = 0.067
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKL 40
+ L++GP +GKT + +AQ+
Sbjct: 2 LLHLIYGPTCSGKTDMAIQIAQET 25
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 30.3 bits (68), Expect = 0.068
Identities = 7/27 (25%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIR 43
+++L+ G G+GK+S+ + S
Sbjct: 5 KLLLM-GRSGSGKSSMRSIIFSNYSAF 30
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
2zzy_A
Length = 186
Score = 30.1 bits (69), Expect = 0.074
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 15/49 (30%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTS 64
+R +++ GP GTGK++L K + F +YP+ F+ S
Sbjct: 1 SRPIVISGPSGTGKSTLLKKL---------------FAEYPDSFGFSVS 34
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase;
HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Length = 368
Score = 30.3 bits (68), Expect = 0.078
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 8 VKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKL 40
++ I+ R VL+ G PGTGKT++ +AQ L
Sbjct: 63 IREGKIA-GRAVLIAGQPGTGKTAIAMGMAQAL 94
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 30.0 bits (68), Expect = 0.079
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAI 50
V+ + G +GKT+L ++Q L + +
Sbjct: 24 VLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 30.2 bits (69), Expect = 0.084
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 23 GPPGTGKTSLCKAVAQKL 40
GP G GKT L +A+A+ +
Sbjct: 528 GPTGVGKTELARALAESI 545
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 29.9 bits (68), Expect = 0.087
Identities = 6/48 (12%), Positives = 16/48 (33%), Gaps = 15/48 (31%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTS 64
+ ++L G G G++ + A+ + P ++
Sbjct: 20 KTLVLIGASGVGRSHIKNAL---------------LSQNPEKFVYPVP 52
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase
like domain, protein binding; 1.31A {Homo sapiens}
SCOP: c.37.1.1
Length = 180
Score = 29.8 bits (68), Expect = 0.090
Identities = 6/48 (12%), Positives = 15/48 (31%), Gaps = 15/48 (31%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTS 64
+ ++L G G G+ + + K+P+ +
Sbjct: 6 KTLVLLGAHGVGRRHIKNTL---------------ITKHPDRFAYPIP 38
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure
initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus
solfataricus} SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 30.0 bits (67), Expect = 0.092
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 15 WNRVVLLHGPPGTGKTSLCKAVAQKL 40
+ L+ G TGK+S+ K +L
Sbjct: 29 RAPITLVLGLRRTGKSSIIKIGINEL 54
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET:
ATP; 2.37A {Humulus lupulus}
Length = 339
Score = 30.3 bits (68), Expect = 0.094
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKL 40
++++L G GTGK+ L +A
Sbjct: 41 KLLVLMGATGTGKSRLSIDLAAHF 64
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop
kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex
aeolicus}
Length = 168
Score = 29.8 bits (68), Expect = 0.096
Identities = 7/27 (25%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIR 43
R+ L+ G +GK+++ +++ L+I
Sbjct: 2 RIYLI-GFMCSGKSTVGSLLSRSLNIP 27
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA
degradation, allosteric REGU; HET: ADP 1PE; 2.40A
{Saccharomyces cerevisiae}
Length = 802
Score = 30.3 bits (68), Expect = 0.10
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 12/56 (21%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAID 71
+ L+ GPPGTGKT + L +L+ SN+ A+D
Sbjct: 375 RPLSLIQGPPGTGKTVTSATIVYHL----------SKIHKDRILVCAPSNV--AVD 418
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 29.8 bits (68), Expect = 0.10
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45
+++L GP G GK ++ K + + S +
Sbjct: 7 LLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 323
Score = 30.1 bits (68), Expect = 0.10
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKL 40
+++ G PG GKT+ +A +L
Sbjct: 45 MIISGMPGIGKTTSVHCLAHEL 66
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 30.1 bits (67), Expect = 0.10
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKL 40
+ + LL G GK+SL +A +
Sbjct: 26 ESLENYPLTLLLGIRRVGKSSLLRAFLNER 55
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 29.8 bits (68), Expect = 0.11
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 10 SNIISWNRVVLLHGPPGTGKTSLCKAVAQK-----LSI 42
SN ++ + ++ P G GKTSL +A+ + +SI
Sbjct: 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALAEIKISI 38
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A
{Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A*
3mrs_A 3n2e_A*
Length = 168
Score = 29.4 bits (67), Expect = 0.12
Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40
+VL+ G G+GK+SL + + L
Sbjct: 8 QHLVLI-GFMGSGKSSLAQELGLAL 31
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural
genomics of infec diseases, csgid, metal binding,
transferase; 1.70A {Bacteroides thetaiotaomicron}
Length = 199
Score = 29.5 bits (67), Expect = 0.13
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIR 43
R+ L G G GKT+L KA A+KL++
Sbjct: 27 RIFLT-GYMGAGKTTLGKAFARKLNVP 52
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside
modification, isopentenyl-tRNA transferase,
transferase-RNA complex; 2.50A {Escherichia coli k-12}
PDB: 2zxu_A* 2zm5_A
Length = 316
Score = 29.4 bits (67), Expect = 0.15
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKL 40
+ + L GP +GKT+L + + L
Sbjct: 11 KAIFLMGPTASGKTALAIELRKIL 34
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: AMP; 2.30A {Sulfolobus solfataricus}
PDB: 3h0k_A
Length = 179
Score = 29.5 bits (66), Expect = 0.15
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQK 39
+V+L+ G PG+GK+ K + ++
Sbjct: 2 KVILITGMPGSGKSEFAKLLKER 24
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase,
shikimat ATP binding, chloroplast, transferase; 2.35A
{Arabidopsis thaliana}
Length = 250
Score = 29.3 bits (66), Expect = 0.16
Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIR 43
+ L+ G G+GKT++ K +A+ L
Sbjct: 51 MYLV-GMMGSGKTTVGKIMARSLGYT 75
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI,
MCSG, PRK04182 class ME structural genomics, protein
structure initiative; 2.20A {Eubacterium ventriosum}
Length = 201
Score = 29.2 bits (65), Expect = 0.16
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44
++ + G+G + K +A+ +I L
Sbjct: 6 QIIIAIGREFGSGGHLVAKKLAEHYNIPL 34
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding,
nucleotide-binding, nucleotidyltransferase, tRNA
processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A
3crr_A
Length = 323
Score = 29.4 bits (67), Expect = 0.16
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKL 40
+ L GP GKT L A+A L
Sbjct: 6 PAIFLMGPTAAGKTDLAMALADAL 29
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 29.4 bits (67), Expect = 0.17
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 14/44 (31%)
Query: 19 VLLHGPP---------GTGKT---SLCKAVAQKLSIRLQTPQAI 50
+LL PP GTGKT +L + ++ + PQAI
Sbjct: 152 LLLSNPPRNMIGQSQSGTGKTAAFAL--TMLSRVDASVPKPQAI 193
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 29.0 bits (66), Expect = 0.18
Identities = 8/39 (20%), Positives = 18/39 (46%)
Query: 1 MKFSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQK 39
M + ++ + ++ P G GK+SL +A+ +
Sbjct: 1 MGSDKIHHHHHHMAQGTLYIVSAPSGAGKSSLIQALLKT 39
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 29.4 bits (66), Expect = 0.19
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 12 IISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLT 67
+++ R ++L GPPG+GKT + + S+ I F K TT+
Sbjct: 1263 LLNSKRGIILCGPPGSGKTMIMNNALRNSSL--YDVVGINFSKD------TTTEHI 1310
Score = 27.9 bits (62), Expect = 0.58
Identities = 11/20 (55%), Positives = 11/20 (55%)
Query: 23 GPPGTGKTSLCKAVAQKLSI 42
GP GTGKT KA Q L
Sbjct: 652 GPAGTGKTETVKAFGQNLGR 671
Score = 27.1 bits (60), Expect = 1.3
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQ 48
++L G TGKT L + VA +++ P+
Sbjct: 1612 MMLIGASRTGKTILTRFVAWLNGLKIVQPK 1641
Score = 26.0 bits (57), Expect = 3.2
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 23 GPPGTGKTSLCKAVAQKLS 41
G G GKT+ K V ++
Sbjct: 930 GKAGCGKTATWKTVIDAMA 948
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2, protein structure
initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Length = 322
Score = 29.0 bits (66), Expect = 0.19
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKL 40
++V + GP GKT +A++L
Sbjct: 4 KLVAIVGPTAVGKTKTSVMLAKRL 27
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A
{Mus musculus} SCOP: c.37.1.1
Length = 198
Score = 29.0 bits (66), Expect = 0.20
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 15/48 (31%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTS 64
R V+L GP G GK++L K + F+++ ++ F+ S
Sbjct: 5 RPVVLSGPSGAGKSTLLKKL---------------FQEHSSIFGFSVS 37
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2; 2.70A
{Staphylococcus epidermidis atcc 12228}
Length = 340
Score = 29.1 bits (66), Expect = 0.20
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKL 40
++++ GP +GKT L VA+K
Sbjct: 8 FLIVIVGPTASGKTELSIEVAKKF 31
>3llu_A RAS-related GTP-binding protein C; structural genomics
consortium, SGC, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens}
PDB: 2q3f_A*
Length = 196
Score = 29.2 bits (65), Expect = 0.21
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIR 43
R++L+ G +GK+S+ K V K+S
Sbjct: 22 RILLM-GLRRSGKSSIQKVVFHKMSPN 47
>3igf_A ALL4481 protein; two-domained protein consisting of the
N-terminal alpha-beta the C-terminal all beta domain.,
structural genomics; 2.00A {Nostoc SP}
Length = 374
Score = 29.1 bits (65), Expect = 0.21
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLS 41
++ G G +T + A A+ L+
Sbjct: 3 LILTFLGKSGVARTKIAIAAAKLLA 27
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP:
a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Length = 549
Score = 29.2 bits (65), Expect = 0.22
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 16 NRVVLLHGPPGTGKTSLCKAV 36
+ + LHG G+GK+ +
Sbjct: 152 SFFLFLHGRAGSGKSVIASQA 172
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 29.0 bits (66), Expect = 0.22
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45
+++L GP G GK ++ +AV +
Sbjct: 9 LLIVLSGPSGVGKGTVREAVFKDPETSFD 37
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET:
AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Length = 222
Score = 29.1 bits (66), Expect = 0.22
Identities = 7/26 (26%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42
+V++ G P +GK + C+ + K +
Sbjct: 7 KVMIS-GAPASGKGTQCELIKTKYQL 31
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups,
carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Length = 321
Score = 29.2 bits (65), Expect = 0.23
Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 24/94 (25%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKK----YPNVLIFTTSNLTGAIDLA 73
++ + G GK++ + + LS P Y N A
Sbjct: 94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSN---------------A 138
Query: 74 FLDRADIKQYIGFPSAAAIFNI--FSSCVEELKR 105
L++ + + GFP + +++ + +K
Sbjct: 139 KLEKQGLMKRKGFPES---YDMPSLLRVLNAIKS 169
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 28.7 bits (65), Expect = 0.25
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIR 43
V+ + G +GKT+L +A+A+ L R
Sbjct: 7 FVIGIAGGTASGKTTLAQALARTLGER 33
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann
fold domains, reductase, nitrogen fixing,
oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter
vinelandii} PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A*
1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A*
3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Length = 492
Score = 29.0 bits (65), Expect = 0.25
Identities = 19/92 (20%), Positives = 29/92 (31%), Gaps = 18/92 (19%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAF--- 74
+ + HGP G G+ S + R + FT+ D+ F
Sbjct: 79 IHISHGPVGCGQYS--------RAGRRNYYIGTTGVNAFVTMNFTSD--FQEKDIVFGGD 128
Query: 75 --LDRADIKQYIG-FPSAAAIFNIFSSCVEEL 103
L + I + FP I + S C L
Sbjct: 129 KKLAKL-IDEVETLFPLNKGIS-VQSECPIGL 158
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 28.7 bits (65), Expect = 0.27
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 23 GPPGTGKTSLCKAVAQKLSIRLQ 45
P G GKT++ + +K +
Sbjct: 34 SPSGCGKTTVANKLLEKQKNNIV 56
>2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo
protein, MCSG, structural GENO PSI-2, protein structure
initiative; HET: BGC; 1.90A {Streptococcus pneumoniae}
Length = 481
Score = 28.8 bits (65), Expect = 0.27
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 8/40 (20%)
Query: 23 GPPGTG-KTSL-CKAVAQKLSIRL---QTPQAIF--FKKY 55
G G G KT L +A A KL +RL P + +K
Sbjct: 337 GYQGQGVKTILPAEASA-KLEVRLVPGLEPHDVLEKIRKQ 375
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase,
HEL helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 28.7 bits (63), Expect = 0.29
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKL 40
+LL G G GKT++ + ++
Sbjct: 33 IAILLGGQSGAGKTTIHRIKQKEF 56
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein,
targeting factor, ATP-bindi TRC40, ARSA,
nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus
jannaschii} PDB: 3ug6_A*
Length = 349
Score = 28.7 bits (64), Expect = 0.29
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLS 41
+ ++ G G GKT++ A L+
Sbjct: 27 KYIMFGGKGGVGKTTMSAATGVYLA 51
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation,
ATP-binding, cytoplasm, mitochondrion,
nucleotide-binding, nucleus; 2.95A {Saccharomyces
cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Length = 409
Score = 28.8 bits (65), Expect = 0.30
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKL 40
+V+++ G G GK+ L +AQK
Sbjct: 3 KVIVIAGTTGVGKSQLSIQLAQKF 26
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 28.8 bits (65), Expect = 0.31
Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 17/87 (19%)
Query: 10 SNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGA 69
++ VV + GP GTGK++ K +A +L PN N +
Sbjct: 41 LPVVKEGMVVGIVGPNGTGKSTAVKILAGQLI--------------PN---LCGDNDSWD 83
Query: 70 IDLAFLDRADIKQYIGFPSAAAIFNIF 96
+ +++ Y I +
Sbjct: 84 GVIRAFRGNELQNYFEKLKNGEIRPVV 110
Score = 24.9 bits (55), Expect = 5.6
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 23 GPPGTGKTSLCKAVA 37
GP G GKT+ K +A
Sbjct: 319 GPNGIGKTTFVKMLA 333
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane
protein; HET: ADP; 2.11A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 324
Score = 28.7 bits (64), Expect = 0.33
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLS 41
V + G G GKT++ A A ++
Sbjct: 15 TFVFIGGKGGVGKTTISAATALWMA 39
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A
{Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A
2r6e_A 2vyf_A 2vye_A
Length = 454
Score = 28.7 bits (65), Expect = 0.34
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 25 PGTGKTSLCKAVAQKLSIRLQTPQAIF 51
P GKT+ +AQ ++ + AIF
Sbjct: 212 PSVGKTAFALNIAQNVATKTNENVAIF 238
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide
biosynthesis, nucleotide-BIND transferase, structural
genomics; 2.10A {Burkholderia pseudomallei 1710B}
Length = 230
Score = 28.3 bits (64), Expect = 0.34
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42
R++LL G PG GK + + +K I
Sbjct: 10 RLILL-GAPGAGKGTQANFIKEKFGI 34
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR;
2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB:
1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 28.3 bits (64), Expect = 0.35
Identities = 9/31 (29%), Positives = 18/31 (58%), Gaps = 5/31 (16%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQK-----LSI 42
RVV+L GP GK+++ + + ++ S+
Sbjct: 21 RVVVLSGPSAVGKSTVVRCLRERIPNLHFSV 51
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+
protein; 2.10A {Human papillomavirus type 18} SCOP:
c.37.1.20
Length = 212
Score = 28.2 bits (63), Expect = 0.37
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKL 40
++ GP TGK+ + +
Sbjct: 61 LVFCGPANTGKSYFGMSFIHFI 82
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 28.1 bits (62), Expect = 0.38
Identities = 6/34 (17%), Positives = 11/34 (32%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAI 50
V + G +GKT+L + +
Sbjct: 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTV 38
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase,
ATP-binding, reticulum, nucleotidyltransferase,
multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4}
PDB: 2vbc_A 2wzq_A
Length = 618
Score = 28.4 bits (63), Expect = 0.39
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 1 MKFSHSKVKSNIISWNRVVLLHGPPGTGKTS 31
+ +V +I R+ ++ PG GKT
Sbjct: 171 IGEPDYEVDEDIFRKKRLTIMDLHPGAGKTK 201
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA
replication, viral replication, nucleotide-binding;
2.10A {Kokobera virus} PDB: 2v6j_A
Length = 431
Score = 28.3 bits (63), Expect = 0.39
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 16 NRVVLLHGPPGTGKT 30
+ +L PG GKT
Sbjct: 2 RELTVLDLHPGAGKT 16
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus
aquaticus}
Length = 444
Score = 28.3 bits (64), Expect = 0.40
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 25 PGTGKTSLCKAVAQKLSIRLQTPQAIF 51
P GKT+ +AQ +++ I+
Sbjct: 209 PAMGKTAFALTIAQNAALKEGVGVGIY 235
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase;
HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A*
2jas_A*
Length = 205
Score = 28.0 bits (62), Expect = 0.40
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 23 GPPGTGKTSLCKAVAQKLSIRL 44
G G GK+++ +++KL +
Sbjct: 7 GTVGAGKSTISAEISKKLGYEI 28
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A
{Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Length = 308
Score = 28.4 bits (63), Expect = 0.41
Identities = 13/95 (13%), Positives = 29/95 (30%), Gaps = 28/95 (29%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAI------FFKKYPNVLIFTTSNLTGAID 71
++ + G GK++ + + LS + + F
Sbjct: 82 IISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLH-----------------P 124
Query: 72 LAFLDRADIKQYIGFPSAAAIFNI--FSSCVEELK 104
L + + GFP + +++ V +LK
Sbjct: 125 NQVLKERGLMKKKGFPES---YDMHRLVKFVSDLK 156
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics
consortium, SGC, RO fold, transferase, ATP binding,
phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium
falciparum}
Length = 243
Score = 28.0 bits (63), Expect = 0.47
Identities = 7/38 (18%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 5 HSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42
+ R + L G PG+GK + + +
Sbjct: 19 KRRYACLSKPDGRYIFL-GAPGSGKGTQSLNLKKSHCY 55
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding,
human, structura genomics, structural genomics
consortium, SGC, transferase; HET: GP5; 2.05A {Homo
sapiens} PDB: 2ar7_A* 3ndp_A
Length = 246
Score = 28.0 bits (63), Expect = 0.48
Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42
R V+L GPPG+GK ++C+ +AQ +
Sbjct: 29 RAVIL-GPPGSGKGTVCQRIAQNFGL 53
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural
genomics, APC84050.2, PS protein structure initiative;
HET: MSE; 1.82A {Neisseria meningitidis MC58}
Length = 199
Score = 28.1 bits (62), Expect = 0.50
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 8/67 (11%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAFLDR 77
+ L+ G PG+GKT ++ + + +FT N+ G
Sbjct: 7 ICLITGTPGSGKTLKMVSMMANDEM------FKPDENGIRRKVFT--NIKGLKIPHTYIE 58
Query: 78 ADIKQYI 84
D K+
Sbjct: 59 TDAKKLP 65
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 28.1 bits (63), Expect = 0.50
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 11 NIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44
N ++ + G G GKT++ K +A ++
Sbjct: 20 PTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNF 53
Score = 28.1 bits (63), Expect = 0.52
Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 11/69 (15%)
Query: 23 GPPGTGKTSLCKAVAQKL-----SIRLQT------PQAIFFKKYPNVLIFTTSNLTGAID 71
GP G GKT+ + + ++ S+ + PQ IF V + + A+
Sbjct: 301 GPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALS 360
Query: 72 LAFLDRADI 80
+ ++
Sbjct: 361 TSSWFFEEV 369
>2kjq_A DNAA-related protein; solution structure, NESG, structural
genomics, PSI-2, protei structure initiative; NMR
{Neisseria meningitidis serogroup B}
Length = 149
Score = 27.6 bits (62), Expect = 0.55
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLS 41
+ + + G G GK+ L +A +
Sbjct: 37 QFIYVWGEEGAGKSHLLQAWVAQAL 61
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase,
hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli}
SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Length = 608
Score = 28.1 bits (63), Expect = 0.55
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 9/41 (21%)
Query: 16 NRVVLLHGPPGTGKTS--------LCK-AVAQKLSIRLQTP 47
R+ ++ G PGTGKT+ L + A ++ IRL P
Sbjct: 164 RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAP 204
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide
biosynthesis, nucleotide-binding, transferase,
structural genomics; 1.80A {Thermus thermophilus}
Length = 186
Score = 27.9 bits (63), Expect = 0.56
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 7/33 (21%)
Query: 17 RVVLLHGPPGTGK-TSLCKAVAQKLSIRLQTPQ 48
V+ L GPPG GK T A +L+ L +
Sbjct: 6 AVIFL-GPPGAGKGTQ-----ASRLAQELGFKK 32
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation,
ADP, nucleotide binding, CARD, apoptosis; HET: ADP;
2.21A {Homo sapiens}
Length = 591
Score = 27.9 bits (62), Expect = 0.56
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 7/37 (18%)
Query: 7 KVKSNIISW-------NRVVLLHGPPGTGKTSLCKAV 36
K+ + I V +HG G GK+ L
Sbjct: 131 KLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEA 167
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 27.9 bits (63), Expect = 0.56
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 15/48 (31%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTS 64
+++ GP G GK +L K + ++PN F+ S
Sbjct: 24 YPLVICGPSGVGKGTLIKKL---------------LNEFPNYFYFSVS 56
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP
phosphotransferase, myokinase, structural genomics,
structural genomics consortium, SGC; 1.48A {Homo
sapiens} PDB: 2ak3_A*
Length = 227
Score = 27.9 bits (63), Expect = 0.56
Identities = 7/26 (26%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42
R V++ G PG+GK ++ + +
Sbjct: 9 RAVIM-GAPGSGKGTVSSRITTHFEL 33
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5;
1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB:
1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Length = 214
Score = 27.5 bits (62), Expect = 0.58
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42
R++LL G P GK + + + +K I
Sbjct: 2 RIILL-GAPVAGKGTQAQFIMEKYGI 26
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region,
conformational changes, transferase; 2.10A {Homo
sapiens} SCOP: c.37.1.1
Length = 196
Score = 27.5 bits (62), Expect = 0.59
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSI 42
VV + G PG GK + C + +K
Sbjct: 3 PLVVFVLGGPGAGKGTQCARIVEKYGY 29
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 27.6 bits (62), Expect = 0.62
Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 23/96 (23%)
Query: 13 ISWN-----RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLT 67
ISW + +L G G GKT+L + A V +F +
Sbjct: 40 ISWQIAKGDKWILY-GLNGAGKTTLLNILN-----------AYEPATSGTVNLF--GKMP 85
Query: 68 GAIDLAFLDRADIKQYIGFPSAAAIFNIFSSC-VEE 102
G + ++Q+IGF S + + V +
Sbjct: 86 GKVG---YSAETVRQHIGFVSHSLLEKFQEGERVID 118
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 27.7 bits (60), Expect = 0.62
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKL 40
LL G PG+GKTSL A+ ++
Sbjct: 34 TAFLLGGQPGSGKTSLRSAIFEET 57
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces
cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Length = 203
Score = 27.5 bits (62), Expect = 0.63
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 8/40 (20%)
Query: 3 FSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42
FS +V V+ + G PG GK + C+ + + S
Sbjct: 10 FSPDQVS--------VIFVLGGPGAGKGTQCEKLVKDYSF 41
>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding,
nucleo binding, transferase; HET: AP5; 1.90A {Aquifex
aeolicus} PDB: 2rh5_A
Length = 206
Score = 27.5 bits (62), Expect = 0.64
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42
+V L GPPG GK + K +A++
Sbjct: 2 ILVFL-GPPGAGKGTQAKRLAKEKGF 26
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein
inhibitors, nucleotide-binding, transferase; HET: AP5;
1.60A {Cryptosporidium parvum iowa II}
Length = 217
Score = 27.5 bits (62), Expect = 0.66
Identities = 7/26 (26%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42
++L+ G PG+GK + C+ + ++ +
Sbjct: 7 NLILI-GAPGSGKGTQCEFIKKEYGL 31
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis,
nucleotide binding binding, cytoplasm,
nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium
tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A*
2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A*
2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A*
3avo_A* 3avq_A*
Length = 312
Score = 27.6 bits (61), Expect = 0.68
Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 24/93 (25%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKK----YPNVLIFTTSNLTGAIDLA 73
++ + G GK++ + + L+ P+ YPN A
Sbjct: 92 IIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPN---------------A 136
Query: 74 FLDRADIKQYIGFPSAAAIFNI--FSSCVEELK 104
L R ++ GFP + +N V +K
Sbjct: 137 ELQRRNLMHRKGFPES---YNRRALMRFVTSVK 166
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 27.6 bits (61), Expect = 0.77
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 7/50 (14%)
Query: 3 FSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFF 52
+ ++N N +L PG GK+ K + L +Q + I
Sbjct: 27 WKRGGDRTN---SNWTIL--AKPGAGKSFTAKMLL--LREYMQGSRVIII 69
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase,
transferase (phosphotransferase); HET: AP5; 1.63A
{Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB:
2aky_A* 3aky_A* 1dvr_A*
Length = 220
Score = 27.5 bits (62), Expect = 0.79
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42
R+VL+ GPPG GK + + ++
Sbjct: 6 RMVLI-GPPGAGKGTQAPNLQERFHA 30
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding
protein, ring protein, octamer, AAA ATPase; 3.20A {Homo
sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Length = 343
Score = 27.5 bits (61), Expect = 0.79
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 17 RVVLLHGPPGTGKTSLCKAVA 37
+ G TGKT L +
Sbjct: 123 AITEAFGEFRTGKTQLSHTLC 143
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination,
ATP-binding, cytoplasm, metal-binding, nucleotide
biosynthesis, nucleotide-binding; HET: AP5; 1.58A
{Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A*
2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A*
1zip_A* 1s3g_A*
Length = 216
Score = 27.1 bits (61), Expect = 0.87
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42
+VL+ G PG GK + + + +K I
Sbjct: 2 NLVLM-GLPGAGKGTQGERIVEKYGI 26
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA
ATPase, ATP binding site, hydro; HET: ADP; 2.15A
{Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB:
1f48_A* 1ii0_A* 1ii9_A*
Length = 589
Score = 27.6 bits (61), Expect = 0.87
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLS 41
+ G G GKTS+ A A +L+
Sbjct: 9 PYLFFTGKGGVGKTSISCATAIRLA 33
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism,
structural genomics, structural genomics of pathogenic
protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium
vivax}
Length = 204
Score = 27.1 bits (61), Expect = 0.87
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 15/48 (31%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTS 64
+++ GP G GK +L K V ++P+ F+ S
Sbjct: 13 PPLVVCGPSGVGKGTLIKKV---------------LSEFPSRFRFSIS 45
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase,
phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1
g.41.2.1 PDB: 2ak2_A 2c9y_A*
Length = 233
Score = 27.2 bits (61), Expect = 0.88
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42
R VLL GPPG GK + +A+ +
Sbjct: 18 RAVLL-GPPGAGKGTQAPKLAKNFCV 42
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 27.4 bits (60), Expect = 0.89
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLS 41
R + + G GK++ K + +
Sbjct: 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27
>3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1,
structural genomics, structu genomics consortium, SGC,
metallopeptidase M20 family; 2.26A {Homo sapiens}
Length = 485
Score = 27.3 bits (61), Expect = 0.90
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 8/40 (20%)
Query: 23 GPPGTG-KTSL-CKAVAQKLSIRL---QTPQAIF--FKKY 55
G KT + + + K SIRL A+ ++
Sbjct: 333 AFDEPGTKTVIPGRVIG-KFSIRLVPHMNVSAVEKQVTRH 371
>2zog_A Cytosolic non-specific dipeptidase; metallopeptidase,
protein-inhibitor complex, CNDP2, CNDP DIP 2, bestatin,
L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus
musculus} PDB: 2zof_A*
Length = 479
Score = 27.3 bits (61), Expect = 0.90
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 8/40 (20%)
Query: 23 GPPGTG-KTSL-CKAVAQKLSIRL---QTPQAIF--FKKY 55
G+G KT + K V K SIRL P+ + Y
Sbjct: 326 AFSGSGAKTVIPRKVVG-KFSIRLVPDMIPEVVSEQVSSY 364
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding,
protein transport; HET: ANP; 3.00A {Chaetomium
thermophilum} PDB: 3iqx_A* 3ibg_A*
Length = 334
Score = 27.2 bits (60), Expect = 0.93
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLS 41
R + + G G GKT+ ++A +L+
Sbjct: 17 RWIFVGGKGGVGKTTTSCSLAIQLA 41
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 27.0 bits (60), Expect = 0.94
Identities = 5/24 (20%), Positives = 15/24 (62%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKL 40
++ + G +GK+++C+ + + L
Sbjct: 26 FLIGVSGGTASGKSTVCEKIMELL 49
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus,
hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Length = 677
Score = 27.2 bits (59), Expect = 0.97
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 16 NRVVLLHGPPGTGKT 30
+++ GP +GKT
Sbjct: 155 RKIIFHSGPTNSGKT 169
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding,
nucleotide-binding, transferase; HET: AP5; 2.00A
{Marinibacillus marinus}
Length = 216
Score = 27.1 bits (61), Expect = 0.98
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42
+VL+ G PG GK + + + +K I
Sbjct: 2 NIVLM-GLPGAGKGTQAEQIIEKYEI 26
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 27.1 bits (60), Expect = 0.98
Identities = 9/40 (22%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 4 SHSKVKSNIIS-WNR--VVLLHGPPGTGKTSLCKAVAQKL 40
H S ++ ++ ++ + G +GKT+L K + + L
Sbjct: 6 HHHHHSSGLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase;
HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A*
3l0p_A*
Length = 223
Score = 26.9 bits (60), Expect = 1.0
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42
+++ GP G+GK + V K S+
Sbjct: 2 NILIF-GPNGSGKGTQGNLVKDKYSL 26
>3co5_A Putative two-component system transcriptional RES regulator;
structural genomics, APC89341.1; 2.40A {Neisseria
gonorrhoeae}
Length = 143
Score = 26.8 bits (60), Expect = 1.0
Identities = 4/14 (28%), Positives = 5/14 (35%)
Query: 16 NRVVLLHGPPGTGK 29
V L G G+
Sbjct: 27 TSPVFLTGEAGSPF 40
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate
kinase); nucleoside monophosphate kinase, NMP kinase;
HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP:
c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Length = 194
Score = 26.7 bits (60), Expect = 1.2
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSI 42
VV + G PG+GK + C + +
Sbjct: 8 VVFVLGGPGSGKGTQCANIVRDFGW 32
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase
domains, sensor 1, sensor 2, transferase; HET: DNA;
2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Length = 250
Score = 26.8 bits (60), Expect = 1.2
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 10 SNIISWNRVV---LLHGPPGTGKTSLCKAVAQKL 40
+N +S R+ L G G GKTS+ + +A+ L
Sbjct: 36 ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis,
phosphoprotein, feedback inhibition,
deoxyribonucleoside kinase, salvage pathway; HET: DCP;
2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB:
1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A*
2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Length = 230
Score = 27.0 bits (59), Expect = 1.2
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 7 KVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKL 40
K + VL+ G G+GKT+ +
Sbjct: 11 GTKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKYK 44
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding
HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens}
SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A*
1xrj_A*
Length = 252
Score = 26.7 bits (59), Expect = 1.2
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQ 48
++ + G +GK+S+C + Q L +
Sbjct: 24 LIGVSGGTASGKSSVCAKIVQLLGQNEVDYR 54
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 26.7 bits (58), Expect = 1.2
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAI 50
++ GTGKT+L K + L R P I
Sbjct: 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLI 40
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 26.9 bits (59), Expect = 1.2
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAI 50
++ + G +GKT+L + L R +
Sbjct: 4 ILSIVGTSDSGKTTLITRMMPILRERGLRVAVV 36
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase;
HET: AMP; 2.3A {Homo sapiens}
Length = 199
Score = 26.7 bits (60), Expect = 1.3
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42
+++ + G PG+GK + C+ + +K
Sbjct: 13 KIIFIIGGPGSGKGTQCEKLVEKYGF 38
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism,
ATP-binding, nucleotide biosynthesis,
nucleotide-binding, transferase; HET: ADP; 1.9A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Length = 201
Score = 26.8 bits (60), Expect = 1.3
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 7/33 (21%)
Query: 17 RVVLLHGPPGTGK-TSLCKAVAQKLSIRLQTPQ 48
RV+LL GPPG GK T A KL+ +L PQ
Sbjct: 22 RVLLL-GPPGAGKGTQ-----AVKLAEKLGIPQ 48
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase,
transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens}
PDB: 1z83_A* 3adk_A
Length = 196
Score = 26.7 bits (60), Expect = 1.3
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42
++ + G PG+GK + C+ + QK
Sbjct: 10 NIIFVVGGPGSGKGTQCEKIVQKYGY 35
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 26.7 bits (58), Expect = 1.4
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 18 VVLLHGPPGTGKTSLCK 34
V++ G TGKTSL +
Sbjct: 140 RVVIVGGSQTGKTSLSR 156
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic
region; yeast protein, ATP binding protein; 2.25A
{Saccharomyces cerevisiae} SCOP: c.37.1.6
Length = 290
Score = 26.9 bits (58), Expect = 1.4
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIR 43
+ GP G+GK+ + L +
Sbjct: 33 FIFFSGPQGSGKSFTSIQIYNHLMEK 58
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP;
1.80A {Debaryomyces hansenii}
Length = 348
Score = 26.8 bits (59), Expect = 1.6
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLS 41
+ + + G G GKT+ +VA +L+
Sbjct: 19 KWIFVGGKGGVGKTTTSSSVAVQLA 43
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3
(6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...;
bifunctional enzyme, EDTA complex; HET: F6P EDT ADP;
2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B*
3qpu_A* 3qpv_A* 3qpw_A*
Length = 520
Score = 26.6 bits (58), Expect = 1.7
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIF 51
V+++ G P GKT + K + + L+ + P +F
Sbjct: 37 VIVMVGLPARGKTYISKKLTRYLNW-IGVPTKVF 69
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella
burnetii}
Length = 181
Score = 26.2 bits (57), Expect = 1.8
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTS-NLTGAIDLAF 74
VL+ G GK+ L A+ + +L I K+ N LI + G I +
Sbjct: 16 KMGVLITGEANIGKSELSLALIDR-GHQLVCDDVIDLKQENNQLIGSCPSVANGYILITG 74
Query: 75 LDRADIKQYIGFPSA 89
+ D+ + G +
Sbjct: 75 IGIIDVPKLFGLDAV 89
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 26.5 bits (59), Expect = 1.8
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKL 40
V+ L G G GK++ K +A K
Sbjct: 105 VLGLVGTNGIGKSTALKILAGKQ 127
Score = 25.8 bits (57), Expect = 3.4
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 14/47 (29%)
Query: 18 VVLLHGPPGTGKTSLCKAVA-------------QKLSIRLQTPQAIF 51
+V++ G GTGKT+L K +A +S++ Q F
Sbjct: 381 LVMM-GENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKF 426
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 26.4 bits (58), Expect = 1.8
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 19 VLLHGPPGTGKTSL 32
+L++G GTGK+ L
Sbjct: 56 LLVNGATGTGKSVL 69
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor,
endoplasmic reticulum, TRC40, ATP-binding, golgi
apparatus; 3.01A {Schizosaccharomyces pombe}
Length = 329
Score = 26.3 bits (58), Expect = 1.9
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLS 41
+ + + G G GKT+ ++A ++S
Sbjct: 20 KWIFVGGKGGVGKTTTSCSLAIQMS 44
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp
loader, sliding clamp, primer-TEM DNA, DNA binding
protein-DNA complex; HET: DNA ADP 08T; 3.20A
{Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Length = 324
Score = 26.1 bits (58), Expect = 1.9
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 19 VLLHGP-PGTGKTSLCKAVAQKL 40
++LH P PGTGKT++ KA+ +
Sbjct: 50 IILHSPSPGTGKTTVAKALCHDV 72
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC,
cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo
sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B*
2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A*
2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A*
2zi7_B* 2zia_A* 3kfx_A* ...
Length = 263
Score = 26.3 bits (57), Expect = 2.0
Identities = 4/18 (22%), Positives = 7/18 (38%)
Query: 23 GPPGTGKTSLCKAVAQKL 40
G GK++ + Q
Sbjct: 31 GNIAAGKSTFVNILKQLC 48
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity
clamp, clamp loader, AAA+ ATPase, transferase; HET:
DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20
PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Length = 373
Score = 26.4 bits (59), Expect = 2.1
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 10 SNIISWNRVV---LLHGPPGTGKTSLCKAVA 37
+N +S R+ L G G GKTS+ + +A
Sbjct: 29 ANGLSLGRIHHAYLFSGTRGVGKTSIARLLA 59
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA
binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A
{Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A*
2zuc_A* 2zud_A*
Length = 324
Score = 26.2 bits (58), Expect = 2.2
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 17 RVVLLHGPPGTGKTSLCKAVA 37
+ G G+GKT LC ++
Sbjct: 108 TMTEFFGEFGSGKTQLCHQLS 128
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM:
PF02562, ST genomics, PSI-2, protein structure
initiative; 2.35A {Corynebacterium glutamicum atcc
13032}
Length = 208
Score = 26.0 bits (58), Expect = 2.3
Identities = 9/15 (60%), Positives = 11/15 (73%), Gaps = 2/15 (13%)
Query: 23 GPPGTGKTSLCKAVA 37
GP G+GKT L A+A
Sbjct: 29 GPAGSGKTYL--AMA 41
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug
gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes
simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A*
1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B*
1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A*
1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Length = 331
Score = 26.3 bits (57), Expect = 2.3
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQ 38
V + GP G GKT+ + +
Sbjct: 6 RVYIDGPHGMGKTTTTQLLVA 26
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase,
DPOR, (bacterio)chlorophyll biosynthesis,
photosynthesis; 2.40A {Thermosynechococcus elongatus}
Length = 460
Score = 26.3 bits (57), Expect = 2.4
Identities = 10/87 (11%), Positives = 25/87 (28%), Gaps = 14/87 (16%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAID-LAFLD 76
L+ G C ++ IF + + +++ ++ L
Sbjct: 38 FFLVIGTKT------CGY-----FLQNAMGVMIFAEPRYAMAELEEGDISAQLNDYEELK 86
Query: 77 RADIKQYIGFPSAAAIFNIFSSCVEEL 103
R + + + I +C E+
Sbjct: 87 RL-CLEIKRDRNPSVIV-WIGTCTTEI 111
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM
CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Length = 533
Score = 26.1 bits (57), Expect = 2.5
Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 16/91 (17%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAF--- 74
V + HGP G C + R ++ N +F+T ++ D+ F
Sbjct: 69 VHITHGPIG------C-SFYTWGGRRFKSKPENGTGLNFNEYVFST-DMQ-ESDIVFGGV 119
Query: 75 --LDRADIKQYIGFPSAAAIFNIFSSCVEEL 103
L A I + AAI ++++C L
Sbjct: 120 NKLKDA-IHEAYEMFHPAAIG-VYATCPVGL 148
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural
genomics, structural genomics consortium, SGC, unknown
function; 1.70A {Plasmodium falciparum}
Length = 187
Score = 25.8 bits (57), Expect = 2.7
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40
N +LL G PG GKT++ + +A K+
Sbjct: 44 NNPILL-GDPGVGKTAIVEGLAIKI 67
>2yys_A Proline iminopeptidase-related protein; TTHA1809, structural
genomics, unknown function; 2.20A {Thermus
thermophilus}
Length = 286
Score = 25.9 bits (57), Expect = 2.8
Identities = 5/11 (45%), Positives = 7/11 (63%)
Query: 18 VVLLHGPPGTG 28
+ +LHG PG
Sbjct: 28 LFVLHGGPGGN 38
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family;
helicase, MCM homolog, DNA replication, ATP-binding,
DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Length = 506
Score = 26.0 bits (57), Expect = 2.9
Identities = 8/25 (32%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIR 43
VLL G P L + L+ R
Sbjct: 242 VLLAGYPVVCSEILHHVLD-HLAPR 265
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A
{Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A*
1p73_A* 1p75_A*
Length = 334
Score = 25.8 bits (56), Expect = 3.0
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIR 43
+ L G G GK++ + +A S
Sbjct: 10 IYLDGVYGIGKSTTGRVMASAASGG 34
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric
ring, heptamer, ring, oligomer, RAD51 polymerizat motif;
HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1
c.37.1.11
Length = 349
Score = 25.7 bits (56), Expect = 3.0
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 17 RVVLLHGPPGTGKTSLCKAVA 37
+ + G G+GKT L +A
Sbjct: 132 AITEVFGEFGSGKTQLAHTLA 152
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 25.5 bits (56), Expect = 3.2
Identities = 7/19 (36%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 16 NRVVLLHGPPGTGKTSLCK 34
+++ GP +GKTSL
Sbjct: 13 PSIIIA-GPQNSGKTSLLT 30
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural
genomics, center for structural genomics; 2.80A
{Escherichia coli}
Length = 145
Score = 25.2 bits (56), Expect = 3.6
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 19 VLLHGPPGTGKT 30
V L+G PGTG+
Sbjct: 27 VWLYGAPGTGRM 38
>3ice_A Transcription termination factor RHO; transcription, ATPase,
hexamer, helicase, RNA, RECA, OB fold ATP-binding,
hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli
k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Length = 422
Score = 25.6 bits (57), Expect = 3.6
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 24 PPGTGKTSLCKAVAQ 38
PP GKT L + +AQ
Sbjct: 182 PPKAGKTMLLQNIAQ 196
>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant
staphylococcus aureus, oxidor thioredoxin fold,
structural genomics, PSI-2; HET: MSE; 1.50A
{Staphylococcus aureus subsp}
Length = 112
Score = 25.1 bits (55), Expect = 3.6
Identities = 10/44 (22%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 35 AVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAFLDRA 78
+A+K +++ ++PQA +F +++ + G I+++ L +A
Sbjct: 71 YIAKKTNVKHESPQAFYFVN--GEMVWNRDH--GDINVSSLAQA 110
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET:
BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Length = 341
Score = 25.5 bits (55), Expect = 3.6
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIR 43
+ L G G GKT+ + +I
Sbjct: 14 RIYLDGAYGIGKTTAAEEFLHHFAIT 39
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA
capture mechanism, ATP-binding, hydrolase,
nucleotide-binding, RN binding; 2.35A {Thermotoga
maritima}
Length = 427
Score = 25.7 bits (57), Expect = 3.8
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 24 PPGTGKTSLCKAVAQ 38
PP GKT++ K +A
Sbjct: 183 PPKAGKTTILKEIAN 197
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase,
helicase, mRNA-export, nuclear pore, hydrolase-RNA
complex; HET: ADP; 1.40A {Saccharomyces cerevisiae}
PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A
3gfp_A 2kbf_A 3pev_A* 3peu_A*
Length = 395
Score = 25.6 bits (57), Expect = 3.8
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 14/44 (31%)
Query: 19 VLLHGPP---------GTGKT---SLCKAVAQKLSIRLQTPQAI 50
+LLH PP GTGKT SL + +++ +PQAI
Sbjct: 38 LLLHNPPRNMIAQSQSGTGKTAAFSL--TMLTRVNPEDASPQAI 79
>3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A,
alternative splicing, hydrolase, phosphoprotein, serine
esterase; 2.00A {Homo sapiens} PDB: 3c5w_P
Length = 316
Score = 25.6 bits (56), Expect = 3.9
Identities = 6/28 (21%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 18 VVLLHGPPGTGKT--SLCKAVAQKLSIR 43
++LLHG + + A+ ++ R
Sbjct: 41 LLLLHGGGHSALSWAVFTAAIISRVQCR 68
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli}
SCOP: c.37.1.20
Length = 195
Score = 25.4 bits (56), Expect = 3.9
Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40
N VL+ G PG GKT++ + +AQ++
Sbjct: 44 NNPVLI-GEPGVGKTAIVEGLAQRI 67
>2ged_A SR-beta, signal recognition particle receptor beta subunit;
protein transport, G protein, proline isomerization,
circular permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 25.1 bits (55), Expect = 4.4
Identities = 7/19 (36%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 16 NRVVLLHGPPGTGKTSLCK 34
+++ GP +GKTSL
Sbjct: 49 PSIIIA-GPQNSGKTSLLT 66
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 25.2 bits (56), Expect = 4.6
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 17 RVVLLHGPPGTGKTSLCKAVA 37
++ L GP G GK++L +A
Sbjct: 27 EILHLVGPNGAGKSTLLARMA 47
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase
(phospho), phosphatase, hydrolase (phosp glycolysis,
bifunctional enzyme; HET: AGS; 2.00A {Rattus
norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A*
2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Length = 469
Score = 25.4 bits (55), Expect = 4.9
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIF 51
++++ G P GKT + K + + L+ + P F
Sbjct: 41 LIVMVGLPARGKTYISKKLTRYLN-FIGVPTREF 73
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants,
DNA-repair, ATP-binding, DNA DA recombination, DNA
repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium
smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A*
1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A
2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A*
2zrp_A* 2zre_A* ...
Length = 349
Score = 25.0 bits (55), Expect = 5.6
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 17 RVVLLHGPPGTGKTSLCK---AVAQKL 40
RV+ ++GP +GKT++ A AQ
Sbjct: 62 RVIEIYGPESSGKTTVALHAVANAQAA 88
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding,
carbohydrate metabolism, magnesium, metal-binding,
multifunctional enzyme; 2.60A {Lactobacillus casei}
PDB: 1jb1_A 1kkl_A 1kkm_A*
Length = 205
Score = 25.0 bits (54), Expect = 5.7
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQK 39
VL+ G G GK+ + Q+
Sbjct: 35 LGVLITGDSGVGKSETALELVQR 57
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase,
DNA repair, DNA binding protein; 1.90A {Escherichia
coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A
1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Length = 356
Score = 25.0 bits (55), Expect = 5.8
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 17 RVVLLHGPPGTGKTSLCK---AVAQKL 40
R+V ++GP +GKT+L A AQ+
Sbjct: 64 RIVEIYGPESSGKTTLTLQVIAAAQRE 90
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase,
DPOR, (bacterio)chlorophyll biosynthesis,
photosynthesis; 2.40A {Thermosynechococcus elongatus}
Length = 511
Score = 25.2 bits (55), Expect = 5.8
Identities = 11/91 (12%), Positives = 22/91 (24%), Gaps = 23/91 (25%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAF--- 74
++H P G + L+ + T S + LA
Sbjct: 30 HGIMHAPLG------D-DYFNVMRSMLERE--------RDFTPVTASIVDRH-VLARGSQ 73
Query: 75 --LDRADIKQYIGFPSAAAIFNIFSSCVEEL 103
+ I + I + +C +
Sbjct: 74 EKVVDN-IIRKDTEEHPDLIV-LTPTCTSSI 102
>1xp8_A RECA protein, recombinase A; recombination, radioresistance,
DNA-repair, ATPase, DNA-BIND protein, DNA binding
protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP:
c.37.1.11 d.48.1.1
Length = 366
Score = 25.0 bits (55), Expect = 5.9
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 17 RVVLLHGPPGTGKTSL---CKAVAQKL 40
R+ ++GP GKT+L A AQK
Sbjct: 75 RITEIYGPESGGKTTLALAIVAQAQKA 101
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA
dependent ATPase, mRNA export, nucleocytoplasmic
transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens}
PDB: 3ews_A* 3g0h_A* 3fhc_B
Length = 412
Score = 24.8 bits (55), Expect = 5.9
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 10/42 (23%)
Query: 19 VLLHGPP---------GTGKTS-LCKAVAQKLSIRLQTPQAI 50
++L PP GTGKT+ A+ ++ + PQ +
Sbjct: 58 LMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCL 99
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding,
cytoplasm, damage, DNA recombination, DNA repair,
DNA-binding; 1.95A {Thermotoga maritima}
Length = 356
Score = 25.0 bits (55), Expect = 5.9
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 17 RVVLLHGPPGTGKTSL---CKAVAQKL 40
R+V + G +GKT+L A AQK+
Sbjct: 62 RIVEIFGQESSGKTTLALHAIAEAQKM 88
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 24.7 bits (54), Expect = 6.1
Identities = 6/19 (31%), Positives = 9/19 (47%), Gaps = 1/19 (5%)
Query: 16 NRVVLLHGPPGTGKTSLCK 34
V+ + G +GKT L
Sbjct: 8 RAVLFV-GLCDSGKTLLFV 25
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A
{Bacillus phage SPP1}
Length = 315
Score = 24.8 bits (55), Expect = 6.3
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIF 51
VL+ P GKT+ A+ +S +
Sbjct: 71 VLIAARPSMGKTAFALKQAKNMSDN-DDVVNLH 102
>3cmw_A Protein RECA, recombinase A; homologous recombination,
recombination/DNA complex; HET: DNA ADP; 2.80A
{Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Length = 1706
Score = 25.0 bits (55), Expect = 6.4
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 17 RVVLLHGPPGTGKTSLCK---AVAQKL 40
R+V ++GP +GKT+L A AQ+
Sbjct: 35 RIVEIYGPESSGKTTLTLQVIAAAQRE 61
Score = 25.0 bits (55), Expect = 6.7
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 17 RVVLLHGPPGTGKTSLCK---AVAQKL 40
R+V ++GP +GKT+L A AQ+
Sbjct: 733 RIVEIYGPESSGKTTLTLQVIAAAQRE 759
Score = 25.0 bits (55), Expect = 6.7
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 17 RVVLLHGPPGTGKTSLCK---AVAQKL 40
R+V ++GP +GKT+L A AQ+
Sbjct: 1432 RIVEIYGPESSGKTTLTLQVIAAAQRE 1458
Score = 25.0 bits (55), Expect = 6.8
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 17 RVVLLHGPPGTGKTSLCK---AVAQKL 40
R+V ++GP +GKT+L A AQ+
Sbjct: 384 RIVEIYGPESSGKTTLTLQVIAAAQRE 410
Score = 25.0 bits (55), Expect = 6.8
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 17 RVVLLHGPPGTGKTSLCK---AVAQKL 40
R+V ++GP +GKT+L A AQ+
Sbjct: 1083 RIVEIYGPESSGKTTLTLQVIAAAQRE 1109
>3cmu_A Protein RECA, recombinase A; homologous recombination,
recombination/DNA complex; HET: DNA ADP; 4.20A
{Escherichia coli}
Length = 2050
Score = 25.0 bits (55), Expect = 6.8
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 17 RVVLLHGPPGTGKTSLCK---AVAQKL 40
R+V ++GP +GKT+L A AQ+
Sbjct: 35 RIVEIYGPESSGKTTLTLQVIAAAQRE 61
Score = 25.0 bits (55), Expect = 7.0
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 17 RVVLLHGPPGTGKTSLCK---AVAQKL 40
R+V ++GP +GKT+L A AQ+
Sbjct: 1776 RIVEIYGPESSGKTTLTLQVIAAAQRE 1802
Score = 25.0 bits (55), Expect = 7.0
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 17 RVVLLHGPPGTGKTSLCK---AVAQKL 40
R+V ++GP +GKT+L A AQ+
Sbjct: 384 RIVEIYGPESSGKTTLTLQVIAAAQRE 410
Score = 25.0 bits (55), Expect = 7.0
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 17 RVVLLHGPPGTGKTSLCK---AVAQKL 40
R+V ++GP +GKT+L A AQ+
Sbjct: 733 RIVEIYGPESSGKTTLTLQVIAAAQRE 759
Score = 25.0 bits (55), Expect = 7.0
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 17 RVVLLHGPPGTGKTSLCK---AVAQKL 40
R+V ++GP +GKT+L A AQ+
Sbjct: 1428 RIVEIYGPESSGKTTLTLQVIAAAQRE 1454
Score = 25.0 bits (55), Expect = 7.0
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 17 RVVLLHGPPGTGKTSLCK---AVAQKL 40
R+V ++GP +GKT+L A AQ+
Sbjct: 1082 RIVEIYGPESSGKTTLTLQVIAAAQRE 1108
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 24.7 bits (55), Expect = 6.9
Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 18 VVLLHGPPGTGKTSLCKAVA 37
V L+ G G GKT+ A+A
Sbjct: 35 VTLI-GANGAGKTTTLSAIA 53
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding
enzyme, lysine biosynthesis, aminotransferase, S
genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Length = 411
Score = 24.9 bits (55), Expect = 7.2
Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 8/53 (15%)
Query: 24 PPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKY-PNVLIFTTSNLTGAIDLAFL 75
PPG G L +A+A + Y P + T T AI A L
Sbjct: 59 PPGPGSAPLRRAIAAQRRRHFGV-------DYDPETEVLVTVGATEAIAAAVL 104
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 24.6 bits (53), Expect = 7.8
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAVA 37
+ R + GP G GK++L +A+A
Sbjct: 458 LKRARRYGICGPNGCGKSTLMRAIA 482
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A
{Bacillus phage SPP1}
Length = 444
Score = 24.8 bits (55), Expect = 7.9
Identities = 6/27 (22%), Positives = 10/27 (37%), Gaps = 1/27 (3%)
Query: 25 PGTGKTSLCKAVAQKLSIRLQTPQAIF 51
P GKT+ A+ +S +
Sbjct: 206 PSMGKTAFALKQAKNMSDN-DDVVNLH 231
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 24.4 bits (53), Expect = 8.1
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 23 GPPGTGKTSLCKAVAQKL 40
G PG GK++ +A+ L
Sbjct: 86 GVPGVGKSTAIEALGMHL 103
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP;
2.35A {Escherichia coli} SCOP: c.67.1.1
Length = 386
Score = 24.5 bits (54), Expect = 8.2
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 8/53 (15%)
Query: 24 PPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKY-PNVLIFTTSNLTGAIDLAFL 75
P TG +L +A+AQK + + I T+ T A+ A
Sbjct: 64 APMTGVQALREAIAQKTERLYGY-------QPDADSDITVTAGATEALYAAIT 109
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon;
HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB:
3bb1_A*
Length = 270
Score = 24.5 bits (53), Expect = 8.2
Identities = 5/16 (31%), Positives = 10/16 (62%), Gaps = 1/16 (6%)
Query: 17 RVVLLHGPPGTGKTSL 32
++++ G G GK+S
Sbjct: 41 TILVM-GKGGVGKSST 55
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET:
GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 24.4 bits (53), Expect = 8.3
Identities = 7/17 (41%), Positives = 10/17 (58%), Gaps = 1/17 (5%)
Query: 17 RVVLLHGPPGTGKTSLC 33
V++L G G GK+S
Sbjct: 38 TVLVL-GKGGVGKSSTV 53
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein
transport, biosynthetic protein; HET: GNP; 3.00A
{Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Length = 296
Score = 24.7 bits (54), Expect = 8.4
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 17 RVVLLHGPPGTGKT 30
+ ++L G G GKT
Sbjct: 106 KYIVLFGSTGAGKT 119
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase,
nuclease, double strand DNA repair, protein-DNA CO
hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus
subtilis} PDB: 3u44_B*
Length = 1166
Score = 24.7 bits (53), Expect = 8.5
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 23 GPPGTGKTSLC-KAVAQKLSIRLQTPQAIF 51
G G+GKT L ++ +L IF
Sbjct: 8 GRSGSGKTKLIINSIQDELRRAPFGKPIIF 37
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA
replication, MCM complex, AAA+ Pro ATP-binding,
DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Length = 595
Score = 24.5 bits (54), Expect = 8.6
Identities = 7/25 (28%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIR 43
+L+ G PGT K+ + + ++ +++ R
Sbjct: 330 ILIIGDPGTAKSQMLQFIS-RVAPR 353
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2,
protein structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 24.4 bits (53), Expect = 9.2
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 23 GPPGTGKTSLCKAVAQKL 40
G PG GK++ +A L
Sbjct: 63 GTPGAGKSTFLEAFGMLL 80
>1v2d_A Glutamine aminotransferase; PLP, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1
PDB: 1v2e_A* 1v2f_A*
Length = 381
Score = 24.4 bits (54), Expect = 9.3
Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 13/52 (25%)
Query: 24 PPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAFL 75
P G +L +A+A++ ++ P+ +V++ TS T A+ +
Sbjct: 58 APPAGLPALREALAEEFAV---EPE--------SVVV--TSGATEALYVLLQ 96
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP:
c.37.1.10 PDB: 2qm7_A*
Length = 337
Score = 24.3 bits (53), Expect = 9.4
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 23 GPPGTGKTSLCKAVAQKL 40
G PG GK++ A+ L
Sbjct: 62 GVPGVGKSTTIDALGSLL 79
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.136 0.401
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,604,122
Number of extensions: 82989
Number of successful extensions: 706
Number of sequences better than 10.0: 1
Number of HSP's gapped: 706
Number of HSP's successfully gapped: 314
Length of query: 105
Length of database: 6,701,793
Length adjustment: 70
Effective length of query: 35
Effective length of database: 4,747,323
Effective search space: 166156305
Effective search space used: 166156305
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.3 bits)