RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4924
(105 letters)
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 42.7 bits (99), Expect = 1e-06
Identities = 10/77 (12%), Positives = 24/77 (31%), Gaps = 1/77 (1%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIR-LQTPQAIFFKKYPNVLIFTTSNLTGAIDLAF 74
R+++L+G GK+ + + + L L + P + + D
Sbjct: 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGV 62
Query: 75 LDRADIKQYIGFPSAAA 91
+ + G +
Sbjct: 63 SIGPEFRALEGAWAEGV 79
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 42.2 bits (98), Expect = 1e-06
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIR 43
++LL G PG+GK+++ +A+A +
Sbjct: 5 NILLLSGHPGSGKSTIAEALANLPGVP 31
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 42.7 bits (100), Expect = 2e-06
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 1 MKFSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKL 40
+ + K I R L GP +GKT+L A+ +
Sbjct: 139 VVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 178
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 41.1 bits (95), Expect = 6e-06
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKL 40
LL G PG+GKTSL A+ ++
Sbjct: 33 TAFLLGGQPGSGKTSLRSAIFEET 56
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 40.9 bits (94), Expect = 6e-06
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 15 WNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43
+ L+ G TGK+S+ K +L++
Sbjct: 28 RAPITLVLGLRRTGKSSIIKIGINELNLP 56
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 40.4 bits (93), Expect = 7e-06
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIR 43
+ + +L G G+GK+++ VA +L
Sbjct: 6 HHIYVLMGVSGSGKSAVASEVAHQLHAA 33
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 40.0 bits (92), Expect = 8e-06
Identities = 10/46 (21%), Positives = 18/46 (39%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIF 61
++ ++ GP G GK++ CK +A +L I
Sbjct: 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRP 47
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 39.9 bits (92), Expect = 1e-05
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 8 VKSNIISWNRVVLLHGPPGTGKTSLCKAV 36
K++ + VLL GPP +GKT+L +
Sbjct: 32 TKNSDRTPLVSVLLEGPPHSGKTALAAKI 60
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 39.6 bits (91), Expect = 1e-05
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40
N+VV++ G PG G T+ + L
Sbjct: 1 NKVVVVTGVPGVGSTTSSQLAMDNL 25
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 39.0 bits (91), Expect = 2e-05
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 16/78 (20%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLS---IRLQTPQAIFFKKYPNVLIFTTSNLTGA 69
+ VL+ GPPGTGKT L KA+A + + F + + V S +
Sbjct: 42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSD--FVEMFVGV---GASRVRDM 96
Query: 70 IDLA--------FLDRAD 79
+ A F+D D
Sbjct: 97 FEQAKKAAPCIIFIDEID 114
Score = 32.1 bits (73), Expect = 0.006
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 52 FKKYPNVLIFTTSNLTGAIDLAFL--DRADIKQYIGFPSAAAIFNIF 96
F+ +++ +N +D A L R D + +G P I
Sbjct: 145 FEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQIL 191
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 39.4 bits (90), Expect = 2e-05
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40
N + G G GKT+L K +++
Sbjct: 46 NMIYGSIGRVGIGKTTLAKFTVKRV 70
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 38.9 bits (90), Expect = 3e-05
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKL 40
+V++ G +GKT L A+ + L
Sbjct: 125 MVIVTGKGNSGKTPLVHALGEAL 147
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 38.6 bits (88), Expect = 4e-05
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKL 40
L G PGTGKT + + +
Sbjct: 46 ATLLGRPGTGKTVTLRKLWELY 67
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 38.1 bits (87), Expect = 5e-05
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKL 40
R V L GPPG GKT+L ++ L
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVL 25
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 38.3 bits (89), Expect = 5e-05
Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 16/78 (20%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLS---IRLQTPQAIFFKKYPNVLIFTTSNLTGA 69
+ VLL GPPG GKT L +AVA + I F + + V + +
Sbjct: 39 ARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSD--FVEMFVGV---GAARVRDL 93
Query: 70 IDLA--------FLDRAD 79
+ A F+D D
Sbjct: 94 FETAKRHAPCIVFIDEID 111
Score = 33.7 bits (77), Expect = 0.002
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 52 FKKYPNVLIFTTSNLTGAIDLAFL--DRADIKQYIGFPSAAAIFNIFSSC 99
F+K +++ +N +D A L R D + I P I
Sbjct: 142 FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIH 191
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 37.4 bits (85), Expect = 8e-05
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 15 WNRVVLLHGPPGTGKTSLCKAVAQKL 40
+ + V + G +GK+ L +A
Sbjct: 6 FAKTVAILGGESSGKSVLVNKLAAVF 31
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 37.3 bits (85), Expect = 8e-05
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 8/52 (15%)
Query: 2 KFSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFK 53
FS +V V+ + G PG GK + C+ + + S + +
Sbjct: 2 AFSPDQVS--------VIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRA 45
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 36.8 bits (84), Expect = 1e-04
Identities = 15/94 (15%), Positives = 26/94 (27%), Gaps = 5/94 (5%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFT--TSNLTGAIDLAF 74
VV+ G PG GK++ + + + ID
Sbjct: 15 EVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQAALRQGKRVVIDNTN 74
Query: 75 LDRADIKQYIGFPSAAA---IFNIFSSCVEELKR 105
D +YI A F + +E+ +
Sbjct: 75 PDVPSRARYIQCAKDAGVPCRCFNFCATIEQARH 108
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 37.1 bits (85), Expect = 1e-04
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 17 RVVLLHGPPGTGKTSLCKAVA 37
+ +L+ GP G GKT + + +A
Sbjct: 50 KNILMIGPTGVGKTEIARRLA 70
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 36.8 bits (84), Expect = 1e-04
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 8 VKSNIISWNRVVLLHGPPGTGKT 30
++ +I R+ ++ PG GKT
Sbjct: 1 IEDDIFRKKRLTIMDLHPGAGKT 23
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 36.2 bits (82), Expect = 2e-04
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40
+++L G PG+GK++ + K
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIAKN 26
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 36.5 bits (83), Expect = 2e-04
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAFLDRA 78
+LL GPPG GKT+L +A +L + L+ +K P L +N D+ F+D
Sbjct: 38 LLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK-PGDLAAILANSLEEGDILFIDEI 96
Query: 79 D 79
Sbjct: 97 H 97
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 36.1 bits (82), Expect = 2e-04
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIR 43
+LL G PG GKT+L K +A K ++
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLK 31
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 36.3 bits (83), Expect = 2e-04
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 7/32 (21%)
Query: 9 KSNIISWNRVVLLHGPPGTGKTSLCKAVAQKL 40
NI L+ GP G GKT + + +A+
Sbjct: 49 PKNI-------LMIGPTGVGKTEIARRLAKLA 73
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 35.9 bits (81), Expect = 3e-04
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 7/35 (20%)
Query: 9 KSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIR 43
K NI L GP G GK+++ + +AQ+L++
Sbjct: 2 KRNIF-------LVGPMGAGKSTIGRQLAQQLNME 29
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 35.7 bits (81), Expect = 3e-04
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTP 47
+R +++ GP GTGK++L K + +
Sbjct: 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFS 32
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase,
BchI {Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 36.1 bits (82), Expect = 3e-04
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKL 40
VL+ G GTGK++ +A+A L
Sbjct: 31 VLVFGDRGTGKSTAVRALAALL 52
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 35.8 bits (81), Expect = 3e-04
Identities = 7/37 (18%), Positives = 9/37 (24%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFF 52
V G G+GKT + L
Sbjct: 34 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEA 70
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 35.4 bits (80), Expect = 4e-04
Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRL 44
+ VL+ G PG+GK+++ + +A+ L + L
Sbjct: 3 KAVLV-GLPGSGKSTIGRRLAKALGVGL 29
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 35.4 bits (80), Expect = 4e-04
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSI 42
V+ + GP G GK +LCKA+A+ L
Sbjct: 5 VITIDGPSGAGKGTLCKAMAEALQW 29
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 35.3 bits (80), Expect = 5e-04
Identities = 8/41 (19%), Positives = 18/41 (43%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPN 57
VV + G PG+GK + C + + + + ++ +
Sbjct: 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQS 47
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania
major [TaxId: 5664]}
Length = 174
Score = 35.0 bits (79), Expect = 5e-04
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLS 41
+++ G PGTGKTS+ + +A +L
Sbjct: 7 NILIT-GTPGTGKTSMAEMIAAELD 30
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 34.8 bits (79), Expect = 6e-04
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTP 47
+ ++L G G G+ + + K R P
Sbjct: 4 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYP 34
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 35.0 bits (80), Expect = 6e-04
Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 8/53 (15%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAID 71
+L++G + + + + + F K +VL ID
Sbjct: 18 ILINGEDLSYPREVSLELPEYVE--------KFPPKASDVLEIDPEGENIGID 62
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 34.9 bits (79), Expect = 6e-04
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTP 47
R V+L GP G GK++L K + Q+ S
Sbjct: 1 RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFS 31
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 35.1 bits (79), Expect = 7e-04
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKY 55
R +L+GPPG GKT+ VAQ+L + A +
Sbjct: 53 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSK 91
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 34.9 bits (79), Expect = 7e-04
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSI 42
+ ++++ + G PG+GK + C+ + QK
Sbjct: 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKYGY 34
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 34.5 bits (78), Expect = 8e-04
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42
R+VL+ GPPG GK + + ++
Sbjct: 4 RMVLI-GPPGAGKGTQAPNLQERFHA 28
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 34.7 bits (78), Expect = 9e-04
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIR 43
+ L G +GK ++ +A+ L+ +
Sbjct: 8 TIFLTGYMNSGKDAIARALQVTLNQQ 33
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 34.6 bits (78), Expect = 0.001
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKL 40
++++ G P GKT + K + + L
Sbjct: 4 LIVMVGLPARGKTYISKKLTRYL 26
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia
chrysanthemi [TaxId: 556]}
Length = 170
Score = 34.2 bits (77), Expect = 0.001
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44
+ + G G G T++ + +A+ L
Sbjct: 2 TEPIFMVGARGCGMTTVGRELARALGYEF 30
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 34.2 bits (77), Expect = 0.001
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIR 43
++ GTGKT+L K + L R
Sbjct: 4 LLAFAAWSGTGKTTLLKKLIPALCAR 29
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 34.2 bits (77), Expect = 0.001
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIR 43
++ ++ G PG GK+++ V + L +
Sbjct: 2 KIGIVTGIPGVGKSTVLAKVKEILDNQ 28
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 194
Score = 34.2 bits (77), Expect = 0.001
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSI 42
VV + G PG GK + C + +K
Sbjct: 3 VVFVLGGPGAGKGTQCARIVEKYGY 27
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 223
Score = 34.2 bits (77), Expect = 0.001
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIF 51
+ + GP +GK+++ K +A+ A++
Sbjct: 5 QIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMY 38
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 34.1 bits (77), Expect = 0.001
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42
R VLL GPPG GK + +A+ +
Sbjct: 5 RAVLL-GPPGAGKGTQAPKLAKNFCV 29
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 34.2 bits (77), Expect = 0.001
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKL 40
RVV+L GP GK+++ + + +++
Sbjct: 3 RVVVLSGPSAVGKSTVVRCLRERI 26
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 34.1 bits (77), Expect = 0.001
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42
RV+LL GPPG GK + +A+KL I
Sbjct: 2 RVLLL-GPPGAGKGTQAVKLAEKLGI 26
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 34.0 bits (76), Expect = 0.001
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIF 51
+ + G TGKT +C +A + +
Sbjct: 23 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEG 58
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 34.1 bits (77), Expect = 0.001
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSI 42
V++ G P +GK + C+ + K +
Sbjct: 5 KVMISGAPASGKGTQCELIKTKYQL 29
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 251
Score = 33.9 bits (76), Expect = 0.002
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45
+ + L G TGK+ LC +A I L
Sbjct: 31 VETGSITELFGEFRTGKSQLCHTLAVTCQIPLD 63
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 34.0 bits (76), Expect = 0.002
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 10 SNIISWNRV---VLLHGPPGTGKTSLCKAVAQKL 40
++ R +LL+GP GTGK + C A+ + +
Sbjct: 24 KSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 57
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 33.7 bits (76), Expect = 0.002
Identities = 6/26 (23%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42
R ++ G PG+GK ++ + + +
Sbjct: 8 RAAIM-GAPGSGKGTVSSRITKHFEL 32
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 33.4 bits (75), Expect = 0.002
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIR 43
R++LL G P GK + + + +K I
Sbjct: 2 RIILL-GAPVAGKGTQAQFIMEKYGIP 27
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 33.4 bits (75), Expect = 0.002
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42
+VL+ G PG GK + + + I
Sbjct: 2 NLVLM-GLPGAGKGTQAEKIVAAYGI 26
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 32.7 bits (73), Expect = 0.003
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 10 SNIISWNRVVLLHGPPGTGKT 30
S+++ +L PG GKT
Sbjct: 1 SHMLKKGMTTVLDFHPGAGKT 21
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 33.0 bits (74), Expect = 0.003
Identities = 9/44 (20%), Positives = 17/44 (38%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLI 60
++L G GTGKT L + + +++ L+
Sbjct: 27 SIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLL 70
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 33.1 bits (74), Expect = 0.003
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 10 SNIISWNRV--VLLHGPPGTGKTSLCKAVAQKL 40
+ + +L +GPPGTGKTS A+ ++L
Sbjct: 25 KKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 57
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 32.9 bits (74), Expect = 0.004
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42
+VL+ G PG GK + + +K
Sbjct: 2 NIVLM-GLPGAGKGTQADRIVEKYGT 26
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase
(APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 32.7 bits (73), Expect = 0.004
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKL 40
V L G G GKT++ A+ + L
Sbjct: 21 TVWLTGLSGAGKTTVSMALEEYL 43
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 32.7 bits (73), Expect = 0.004
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 16 NRVVLLHGPPGTGKTSLC 33
+ + G G+GKT L
Sbjct: 36 QAITEVFGEFGSGKTQLA 53
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 32.7 bits (73), Expect = 0.004
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 2/46 (4%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTT 63
V L P G GK+ L +A I + +I+
Sbjct: 31 VGALVSPGGAGKSMLALQLA--AQIAGGPDLLEVGELPTGPVIYLP 74
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 258
Score = 32.7 bits (73), Expect = 0.004
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44
+ R +LL+GPPGTGKT + +AVA +
Sbjct: 35 VKPPRGILLYGPPGTGKTLIARAVANETGAFF 66
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 32.7 bits (73), Expect = 0.005
Identities = 15/87 (17%), Positives = 22/87 (25%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAFLD 76
R L+ G GTGKT I P + I + G +D
Sbjct: 27 RSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVD 86
Query: 77 RADIKQYIGFPSAAAIFNIFSSCVEEL 103
+ P + + L
Sbjct: 87 EGKLFILDASPDPEGQEVVGGFDLSAL 113
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 32.4 bits (72), Expect = 0.005
Identities = 7/43 (16%), Positives = 11/43 (25%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKY 55
I + G TGKT L + + +
Sbjct: 34 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIF 76
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 32.3 bits (72), Expect = 0.006
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKL 40
+V+ G G+GKT+L + L
Sbjct: 2 IVVFVGTAGSGKTTLTGEFGRYL 24
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter
jejuni [TaxId: 197]}
Length = 161
Score = 32.2 bits (72), Expect = 0.006
Identities = 9/26 (34%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIR 43
+V + G G+GK++L +A+A+ L +
Sbjct: 3 IVFI-GFMGSGKSTLARALAKDLDLV 27
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 32.2 bits (73), Expect = 0.006
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAFLDRA 78
VL+ G G GK + + + + LS R + + L G AF
Sbjct: 26 VLITGESGVGKEVVARLIHK-LSDR-SKEPFVALNVASIPRDIFEAELFGYEKGAFTGAV 83
Query: 79 DIKQ 82
K+
Sbjct: 84 SSKE 87
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 32.2 bits (72), Expect = 0.007
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 19 VLLHGPPGTGKTSLCKAVAQ 38
VLL GPPG GKT+L +A
Sbjct: 38 VLLAGPPGLGKTTLAHIIAS 57
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 31.9 bits (71), Expect = 0.008
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLS 41
+++ G PG GKT+L K + ++L
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLG 25
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 32.0 bits (71), Expect = 0.008
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 20 LLHGPPGTGKTSLCKAVAQK 39
L+ PG G +L A+++
Sbjct: 28 LIQALPGMGDDALIYALSRY 47
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain
{Caenorhabditis elegans [TaxId: 6239]}
Length = 277
Score = 31.7 bits (71), Expect = 0.009
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQ 45
+ + LHG G+GK+ + K +
Sbjct: 44 SFFLFLHGRAGSGKSVIASQALSKSDQLIG 73
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 31.3 bits (70), Expect = 0.010
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQK 39
+ ++ P G GK+SL +A+ +
Sbjct: 3 TLYIVSAPSGAGKSSLIQALLKT 25
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 265
Score = 31.7 bits (71), Expect = 0.011
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRL 44
++ ++ VL +GPPG GKT L KA+A +
Sbjct: 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQANF 69
Score = 27.5 bits (60), Expect = 0.25
Identities = 11/36 (30%), Positives = 13/36 (36%)
Query: 52 FKKYPNVLIFTTSNLTGAIDLAFLDRADIKQYIGFP 87
NV I +N ID A L + Q I P
Sbjct: 141 MSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIP 176
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 31.3 bits (69), Expect = 0.014
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLS 41
V+ + G +GKT+L ++Q L
Sbjct: 24 VLGIDGLSRSGKTTLANQLSQTLR 47
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
influenzae [TaxId: 727]}
Length = 158
Score = 30.8 bits (69), Expect = 0.015
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIF 51
+V L+G G GKT+L + + Q + + +
Sbjct: 35 MVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTY 68
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 31.2 bits (70), Expect = 0.016
Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40
N VL+ G PG GKT++ + +AQ++
Sbjct: 44 NNPVLI-GEPGVGKTAIVEGLAQRI 67
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 268
Score = 30.7 bits (69), Expect = 0.018
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 19 VLLHGPPGTGKTSLCKAVAQK 39
LL G G GKT++ + +A +
Sbjct: 42 PLLVGESGVGKTAIAEGLAWR 62
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 318
Score = 30.4 bits (67), Expect = 0.026
Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 1/76 (1%)
Query: 12 IISWNRVVLLHGPPGTGKTS-LCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAI 70
+ + +L+ G+GKT L +A ++ + P I + N ++
Sbjct: 20 VRTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSL 79
Query: 71 DLAFLDRADIKQYIGF 86
+ I +
Sbjct: 80 LGGAAEDVWISTFHSM 95
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli
[TaxId: 562]}
Length = 222
Score = 30.4 bits (67), Expect = 0.027
Identities = 13/77 (16%), Positives = 19/77 (24%), Gaps = 7/77 (9%)
Query: 16 NRVVLLHGPPGTGKTSLCKAV-------AQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTG 68
V L G G GK++ A L R T L
Sbjct: 24 ELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVC 83
Query: 69 AIDLAFLDRADIKQYIG 85
L ++ + +G
Sbjct: 84 YSMLDTINSRHQRVVVG 100
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 30.2 bits (67), Expect = 0.030
Identities = 6/34 (17%), Positives = 11/34 (32%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAI 50
V + G +GKT+L + +
Sbjct: 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTV 35
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 29.9 bits (66), Expect = 0.038
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIR 43
++ + G +GK+S+C + Q L
Sbjct: 4 LIGVSGGTASGKSSVCAKIVQLLGQN 29
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli
[TaxId: 562]}
Length = 308
Score = 30.1 bits (67), Expect = 0.038
Identities = 5/33 (15%), Positives = 14/33 (42%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAI 50
++ + G GK++ + + LS + +
Sbjct: 82 IISIAGSVAVGKSTTARVLQALLSRWPEHRRVE 114
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain
{Adeno-associated virus 2, AAV2 [TaxId: 10804]}
Length = 267
Score = 29.5 bits (66), Expect = 0.054
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 6 SKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKL 40
+ + L GP TGKT++ +A+A +
Sbjct: 94 LGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human
hepatitis C virus (HCV), different isolates [TaxId:
11103]}
Length = 136
Score = 29.1 bits (64), Expect = 0.059
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 13/52 (25%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLT 67
+V LH P G+GK+ + P A + Y +++ + T
Sbjct: 8 FQVAHLHAPTGSGKS-------------TKVPAAYAAQGYKVLVLNPSVAAT 46
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 29.4 bits (65), Expect = 0.062
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLS 41
+ GP G+GK+ + L
Sbjct: 29 FIFFSGPQGSGKSFTSIQIYNHLM 52
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 29.3 bits (64), Expect = 0.069
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 9/49 (18%)
Query: 1 MKFSHSKVKSNIISWNRVVL--------LHGPPGTGKTSLCKAVAQKLS 41
MK VK N S + V+ + G G+GK+SL A+ L
Sbjct: 1 MKLERVTVK-NFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLY 48
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 28.8 bits (64), Expect = 0.077
Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 1/75 (1%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTT-SNLTGAIDLAF 74
VL+ G G GK+ + ++ + + + LI + +++
Sbjct: 15 GVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREISKDELIGRAPKLIEHLLEIRG 74
Query: 75 LDRADIKQYIGFPSA 89
L ++ G S
Sbjct: 75 LGIINVMTLFGAGSI 89
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain
(RecD) {Escherichia coli [TaxId: 562]}
Length = 359
Score = 29.1 bits (64), Expect = 0.095
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKL 40
R+ ++ G PGTGKT+ + L
Sbjct: 163 RRISVISGGPGTGKTTTVAKLLAAL 187
>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 279
Score = 28.8 bits (63), Expect = 0.097
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIR 43
+ +++L G G GKT++ A+A +L+
Sbjct: 20 HGLIMLMGKGGVGKTTMAAAIAVRLADM 47
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 28.6 bits (64), Expect = 0.12
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKL 40
++ GP TGK+ + +
Sbjct: 54 NCLVFCGPANTGKSYFGMSFIHFI 77
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB
{Methylobacterium extorquens [TaxId: 408]}
Length = 323
Score = 28.3 bits (62), Expect = 0.14
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 23 GPPGTGKTSLCKAVAQKL 40
G PG GK++ A+ L
Sbjct: 58 GVPGVGKSTTIDALGSLL 75
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 28.2 bits (62), Expect = 0.17
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLS 41
RVVL+ G G GKT+ + +
Sbjct: 7 RVVLVVGVNGVGKTTTIAKLGRYYQ 31
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 296
Score = 28.0 bits (61), Expect = 0.17
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 8/41 (19%)
Query: 1 MKFSHSKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLS 41
M+F + + G G GKTS+ A A +L+
Sbjct: 1 MQFLQNI--------PPYLFFTGKGGVGKTSISCATAIRLA 33
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides
[TaxId: 1063]}
Length = 288
Score = 28.0 bits (62), Expect = 0.19
Identities = 10/88 (11%), Positives = 21/88 (23%), Gaps = 5/88 (5%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAFLDR 77
++ + G G G +++ Q +I + + +L
Sbjct: 6 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF-----HRFNRADMKAELDRRYA 60
Query: 78 ADIKQYIGFPSAAAIFNIFSSCVEELKR 105
A + F A E
Sbjct: 61 AGDATFSHFSYEANELKELERVFREYGE 88
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase),
helicase domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 28.1 bits (61), Expect = 0.19
Identities = 5/34 (14%), Positives = 14/34 (41%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIF 51
V+++ G GK++ + A + + +
Sbjct: 37 VIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLA 70
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 27.9 bits (61), Expect = 0.21
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 23 GPPGTGKTSLCKAVAQKL 40
G PG GK++ +A L
Sbjct: 61 GTPGAGKSTFLEAFGMLL 78
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 27.6 bits (61), Expect = 0.22
Identities = 7/45 (15%), Positives = 18/45 (40%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLI 60
VL+ G G GK+ + Q+ + + +++ ++
Sbjct: 14 GLGVLITGDSGVGKSETALELVQRGHRLIADDRVDVYQQDEQTIV 58
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 27.7 bits (61), Expect = 0.24
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKL-----SIRLQTPQAIFFKKYPNVLIFTTSN 65
V+L+ G G GKT+ +A++ S+ L + ++ N
Sbjct: 11 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRN 63
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 27.7 bits (60), Expect = 0.26
Identities = 11/39 (28%), Positives = 13/39 (33%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKY 55
R VL G +GKT L + QT Y
Sbjct: 1 RAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIY 39
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId:
271]}
Length = 207
Score = 27.4 bits (60), Expect = 0.28
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLS 41
+ L G G+GKT+ +A
Sbjct: 11 NLWFLVGLQGSGKTTTAAKLALYYK 35
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein
TrwB {Escherichia coli [TaxId: 562]}
Length = 433
Score = 27.6 bits (60), Expect = 0.29
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIR 43
R +L++G GTGK+ L + +A +R
Sbjct: 50 PRHLLVNGATGTGKSVLLRELAYTGLLR 77
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Length = 364
Score = 27.5 bits (60), Expect = 0.29
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 19 VLLHGPPGTGKTSLCKAVAQKLSIRL 44
+LL GP G+GKT + + +A+ L I +
Sbjct: 71 ILLIGPTGSGKTLMAQTLAKHLDIPI 96
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 27.2 bits (60), Expect = 0.32
Identities = 10/70 (14%), Positives = 25/70 (35%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAFL 75
VLL G G GK+ + K + + ++ + +++ L
Sbjct: 15 GVGVLLTGRSGIGKSECALDLINKNHLFVGDDAIEIYRLGNRLFGRAQEVAKKFMEIRGL 74
Query: 76 DRADIKQYIG 85
+++++ G
Sbjct: 75 GIINVERFYG 84
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId:
5076]}
Length = 208
Score = 27.1 bits (59), Expect = 0.33
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKL 40
+ L G +GK++L + +L
Sbjct: 26 TIWLTGLSASGKSTLAVELEHQL 48
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 208
Score = 27.3 bits (59), Expect = 0.34
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 23 GPPGTGKTSLCKAVAQKL 40
G G GK +L + ++
Sbjct: 7 GVDGAGKRTLVEKLSGAF 24
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 27.0 bits (59), Expect = 0.35
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKL 40
V++L G GTGK + +A
Sbjct: 14 VIMLVGVQGTGKATTAGKLAYFY 36
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 209
Score = 27.2 bits (59), Expect = 0.36
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 23 GPPGTGKTSLCKAVAQKL 40
G GK++ + + + L
Sbjct: 10 GVDRAGKSTQSRKLVEAL 27
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia
coli, RepD [TaxId: 562]}
Length = 306
Score = 27.0 bits (58), Expect = 0.38
Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 9/48 (18%)
Query: 19 VLLHGPPGTGKTS-LCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSN 65
L+ G+GKT + +A + + ++ T +N
Sbjct: 17 CLVLAGAGSGKTRVITNKIAHLIRGCGYQAR--------HIAAVTFTN 56
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 224
Score = 26.9 bits (58), Expect = 0.44
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 10 SNIISWNRV--VLLHGPPGTGKTSLCKAVAQKL 40
I + +++ G PG GKT+ +A +L
Sbjct: 28 QQIAKDGNMPHMIISGMPGIGKTTSVHCLAHEL 60
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 241
Score = 26.9 bits (58), Expect = 0.46
Identities = 5/37 (13%), Positives = 13/37 (35%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFK 53
R + + G GK++ K + + + +
Sbjct: 3 RRLSIEGNIAVGKSTFVKLLTKTYPEWHVATEPVATW 39
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 26.7 bits (59), Expect = 0.47
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 9/74 (12%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA--IFFKKYPNVLIFTTSNLTGAI--DLA 73
++L GP G GKT+ + +A L+ P I+F + + A
Sbjct: 34 FLVLLGPSGCGKTTTLRMIA-----GLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYA 88
Query: 74 FLDRADIKQYIGFP 87
+ + I FP
Sbjct: 89 VWPHMTVYENIAFP 102
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 241
Score = 26.9 bits (58), Expect = 0.47
Identities = 4/24 (16%), Positives = 10/24 (41%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKL 40
+ + + G GK++ + Q
Sbjct: 3 KKISIEGNIAAGKSTFVNILKQLC 26
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 26.6 bits (58), Expect = 0.48
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKL 40
V+++ G GTGKT+ C +A+
Sbjct: 13 VIMVVGVNGTGKTTSCGKLAKMF 35
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli
[TaxId: 562]}
Length = 210
Score = 26.8 bits (58), Expect = 0.51
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 23 GPPGTGKTSLCKAVAQKLS 41
G G GKT+ V + L
Sbjct: 9 GLEGAGKTTARNVVVETLE 27
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 197
Score = 26.5 bits (57), Expect = 0.59
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKL 40
VL+ G G+GKT+ +
Sbjct: 11 TVLIEGNIGSGKTTYLNHFEKYK 33
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 26.5 bits (57), Expect = 0.66
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPN 57
R+ +L G +GK+SL L+ ++ +KK
Sbjct: 7 RLGVL-GDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEML 46
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 26.1 bits (56), Expect = 0.74
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPN 57
R++LL G GKT+L K +A + + Q K +
Sbjct: 18 RILLL-GLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQS 57
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4
[TaxId: 10331]}
Length = 333
Score = 26.5 bits (58), Expect = 0.74
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 23 GPPGTGKTSLCKAVAQKLSIRL 44
G G GK++ + +A S
Sbjct: 13 GVYGIGKSTTGRVMASAASGGS 34
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 214
Score = 26.0 bits (56), Expect = 0.77
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 23 GPPGTGKTSLCKAVAQKL 40
G TGKT+ C + +KL
Sbjct: 10 GLDRTGKTTQCNILYKKL 27
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
1, different strains [TaxId: 10298]}
Length = 329
Score = 26.1 bits (57), Expect = 0.81
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 23 GPPGTGKTSLCKAVAQKLS 41
GP G GKT+ + + S
Sbjct: 11 GPHGMGKTTTTQLLVALGS 29
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895
{Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 26.0 bits (57), Expect = 0.88
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 18 VVLLHGPPGTGKTSLCKAVA 37
VV HGP G GKT+L K ++
Sbjct: 29 VVNFHGPNGIGKTTLLKTIS 48
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 26.1 bits (57), Expect = 0.94
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 23 GPPGTGKTSLCKAVAQKLSIRL 44
G G GKT+ + +I
Sbjct: 12 GAYGIGKTTAAEEFLHHFAITP 33
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 315
Score = 25.9 bits (56), Expect = 1.0
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 18 VVLLHGPPGTGKTSLCKAVA 37
L GP G GKT + ++
Sbjct: 54 SFLFAGPTGVGKTEVTVQLS 73
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 25.8 bits (55), Expect = 1.0
Identities = 6/23 (26%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQK 39
+++ L G GKT+L +
Sbjct: 2 KLLFL-GLDNAGKTTLLHMLKND 23
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 26.0 bits (55), Expect = 1.1
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 16 NRVVLLHGPPGTGKTSLCKAV 36
+ L+ G G+GK+SL A+
Sbjct: 23 EGINLIIGQNGSGKSSLLDAI 43
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation
factor DnaA {Aquifex aeolicus [TaxId: 63363]}
Length = 213
Score = 26.0 bits (56), Expect = 1.1
Identities = 11/54 (20%), Positives = 21/54 (38%)
Query: 7 KVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLI 60
+ N+ S + ++G GTGKT L +A + R + ++
Sbjct: 27 EALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMV 80
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 25.7 bits (55), Expect = 1.1
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 14 SWNRVVLLHGPPGTGKTSL 32
S+ +++ GP +GKTSL
Sbjct: 1 SYQPSIIIAGPQNSGKTSL 19
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 25.8 bits (55), Expect = 1.1
Identities = 6/16 (37%), Positives = 11/16 (68%), Gaps = 1/16 (6%)
Query: 17 RVVLLHGPPGTGKTSL 32
R+++L G GKT++
Sbjct: 4 RLLML-GLDNAGKTTI 18
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 25.6 bits (55), Expect = 1.2
Identities = 13/86 (15%), Positives = 23/86 (26%), Gaps = 1/86 (1%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAFLD 76
+++++ G GKTS A K + D A +
Sbjct: 7 KILII-GNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 77 RADIKQYIGFPSAAAIFNIFSSCVEE 102
R + A ++ EE
Sbjct: 66 RYRTITTAYYRGAMGFILMYDITNEE 91
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 231
Score = 25.7 bits (55), Expect = 1.2
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 10 SNIISWNRV--VLLHGPPGTGKTSLCKAVAQKL 40
+ + + +L GPPG GKT+ A+A++L
Sbjct: 37 KHYVKTGSMPHLLFAGPPGVGKTTAALALAREL 69
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/16 (43%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
Query: 17 RVVLLHGPPGTGKTSL 32
R+++L G G GKT++
Sbjct: 7 RILIL-GLDGAGKTTI 21
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 25.4 bits (54), Expect = 1.3
Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 2/79 (2%)
Query: 17 RVVLLHGPPGTGKTSLCKA-VAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAFL 75
R++++ G GKT++ ++ + T + FT ++ G + L
Sbjct: 2 RILMV-GLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 60
Query: 76 DRADIKQYIGFPSAAAIFN 94
R + G +
Sbjct: 61 WRHYFQNTQGLIFVVDSND 79
>g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 623
Score = 25.7 bits (55), Expect = 1.3
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 19 VLLHGPPGTGKTS-LCKAVAQKLSIRLQTPQAI 50
+L+ G+GKT L +A ++ + P I
Sbjct: 27 LLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNI 59
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle
domain {Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 25.3 bits (54), Expect = 1.4
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 19 VLLHGPPGTGKTSLCKAVA-QKLSIR----LQTPQAIFFKKYPNVLIFTTSNLTGAIDLA 73
V L G P GK++L V+ K I + + + F ++L G I+ A
Sbjct: 4 VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGA 63
Query: 74 FLDRADIKQYI 84
Q++
Sbjct: 64 HQGVGLGHQFL 74
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 25.3 bits (54), Expect = 1.6
Identities = 13/86 (15%), Positives = 25/86 (29%), Gaps = 1/86 (1%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAFLD 76
+ +++ G GTGK+ L +K + + D A +
Sbjct: 7 KFLVI-GNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 65
Query: 77 RADIKQYIGFPSAAAIFNIFSSCVEE 102
R + AA ++ E
Sbjct: 66 RFRSVTRSYYRGAAGALLVYDITSRE 91
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 25.0 bits (53), Expect = 1.6
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKY 55
+ L+ G +GKT+ +A P F +
Sbjct: 4 ELTLV-GLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK 41
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 25.2 bits (55), Expect = 1.8
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49
I V + GP G+GK+++ + L P
Sbjct: 28 IKEGEFVSIMGPSGSGKSTMLNIIG-----CLDKPTE 59
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 24.9 bits (54), Expect = 1.9
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 18/69 (26%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAFLDR 77
V+ + G G+GK++L K + R P+ VLI DLA D
Sbjct: 31 VIGIVGRSGSGKSTLTKLIQ-----RFYIPENG------QVLI-------DGHDLALADP 72
Query: 78 ADIKQYIGF 86
+++ +G
Sbjct: 73 NWLRRQVGV 81
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 24.8 bits (53), Expect = 2.0
Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 2/87 (2%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAI-DLAFL 75
+V+L+ G G GKT L + + VL + + D A
Sbjct: 8 KVMLV-GDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 66
Query: 76 DRADIKQYIGFPSAAAIFNIFSSCVEE 102
+R + + A A+ ++ +
Sbjct: 67 ERFRSVTHAYYRDAHALLLLYDVTNKA 93
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 25.0 bits (53), Expect = 2.1
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 8/37 (21%)
Query: 10 SNIISW-------NRVVLLHGPPGTGKTSLCKAVAQK 39
S+++ + ++V L G GKT+L +
Sbjct: 1 SSVLQFLGLYKKTGKLVFL-GLDNAGKTTLLHMLKDD 36
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 24.8 bits (53), Expect = 2.2
Identities = 6/34 (17%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 6 SKVKSNIISWNRVVLLHGPPGTGKTSLCKAVAQK 39
+K ++ ++++ G G GK+S ++ +
Sbjct: 23 GNLKQEDVNSLTILVM-GKGGVGKSSTVNSIIGE 55
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import
ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 240
Score = 25.0 bits (54), Expect = 2.2
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 6/32 (18%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49
VLL GP G GK+ + +A + P
Sbjct: 27 CVLL-GPTGAGKSVFLELIA-----GIVKPDR 52
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 184
Score = 24.7 bits (52), Expect = 2.3
Identities = 9/18 (50%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 17 RVVLLHGPPGTGKTSLCK 34
+V++L G G GKTSL
Sbjct: 4 KVIIL-GDSGVGKTSLMN 20
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 24.7 bits (53), Expect = 2.3
Identities = 14/83 (16%), Positives = 24/83 (28%), Gaps = 1/83 (1%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAFLD 76
+++L+ G G GK+ L + K V I D A +
Sbjct: 4 KILLI-GDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62
Query: 77 RADIKQYIGFPSAAAIFNIFSSC 99
R + A I ++
Sbjct: 63 RFRTITTAYYRGAMGIILVYDIT 85
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 227
Score = 24.7 bits (52), Expect = 2.3
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 10 SNIISWNRV--VLLHGPPGTGKTSLCKAVAQKL 40
+ ++ +L +GPPGTGKTS A+A+++
Sbjct: 27 RKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 59
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 24.7 bits (53), Expect = 2.4
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49
+ GP G GKT+ + +A L P
Sbjct: 33 RFGILGPSGAGKTTFMRIIA-----GLDVPST 59
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 24.9 bits (54), Expect = 2.4
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49
++ + G G+GKTSL +
Sbjct: 64 MLAITGSTGSGKTSLLMLIL-----GELEASE 90
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 24.6 bits (52), Expect = 2.4
Identities = 6/16 (37%), Positives = 10/16 (62%), Gaps = 1/16 (6%)
Query: 17 RVVLLHGPPGTGKTSL 32
++V++ G GKT L
Sbjct: 4 KLVIV-GDGACGKTCL 18
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 24.6 bits (53), Expect = 2.4
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 5/33 (15%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAI 50
++ GP G GKT + +A P +
Sbjct: 28 YFVILGPTGAGKTLFLELIA-----GFHVPDSG 55
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase
TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 24.7 bits (52), Expect = 2.4
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQK 39
+VV+ G P GK+SL A+A +
Sbjct: 3 KVVIA-GRPNAGKSSLLNALAGR 24
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 24.7 bits (53), Expect = 2.4
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 11 NIISWNRV---VLLHGPPGTGKTSLCKAVAQKL 40
N +S R+ L G G GKTS+ + +A+ L
Sbjct: 26 NGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 58
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 24.9 bits (54), Expect = 2.5
Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 18/74 (24%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDL 72
+ V L GP G+GK+++ + L P +L+ L
Sbjct: 37 LRPGEVTALVGPNGSGKSTVAALLQ-----NLYQPTG------GQLLL-------DGKPL 78
Query: 73 AFLDRADIKQYIGF 86
+ + + +
Sbjct: 79 PQYEHRYLHRQVAA 92
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 24.7 bits (52), Expect = 2.6
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 19 VLLHGPPGTGKTSLCKAVA-QKLSIRLQTPQAIFFKKYPN 57
VL+ G P GK++L + +K +I
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDT 42
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 24.7 bits (52), Expect = 2.6
Identities = 9/18 (50%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Query: 17 RVVLLHGPPGTGKTSLCK 34
+V+LL G PG GK++L +
Sbjct: 3 KVLLL-GAPGVGKSALAR 19
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 24.7 bits (52), Expect = 2.6
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 18 VVLLHGPPGTGKTSLCKA-VAQKLSIRLQTPQAIFFKKYPNVLIF 61
V + G P GK++L + K++ PQ + +
Sbjct: 7 FVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG 51
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 24.4 bits (52), Expect = 2.7
Identities = 11/82 (13%), Positives = 24/82 (29%), Gaps = 1/82 (1%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAFLD 76
+++++ G G GK+SL K + + D A +
Sbjct: 9 KILII-GESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 67
Query: 77 RADIKQYIGFPSAAAIFNIFSS 98
R + A + ++
Sbjct: 68 RFRTLTPSYYRGAQGVILVYDV 89
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 24.5 bits (53), Expect = 2.8
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 18 VVLLHGPPGTGKTSLCKAVA 37
V+ GP G GK++L + +A
Sbjct: 28 FVVFVGPSGCGKSTLLRMIA 47
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC
transporter MsbA, C-terminal domain {Salmonella
typhimurium [TaxId: 90371]}
Length = 253
Score = 24.4 bits (53), Expect = 2.8
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAVA 37
I + V L G G+GK+++ +
Sbjct: 38 IPAGKTVALVGRSGSGKSTIASLIT 62
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 24.5 bits (53), Expect = 2.8
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 18 VVLLHGPPGTGKTSLCKAVA 37
V L+ GP G+GK++L +
Sbjct: 32 VTLIIGPNGSGKSTLINVIT 51
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 24.6 bits (52), Expect = 2.9
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 4/24 (16%)
Query: 11 NIISWNRVVLLHGPPGTGKTSLCK 34
NI+ +V++L G G GKTSL
Sbjct: 1 NIL---KVIIL-GDSGVGKTSLMH 20
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 24.3 bits (51), Expect = 3.1
Identities = 5/18 (27%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 17 RVVLLHGPPGTGKTSLCK 34
++V++ G GK+S+ +
Sbjct: 4 KMVVV-GNGAVGKSSMIQ 20
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 24.5 bits (52), Expect = 3.4
Identities = 6/18 (33%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 17 RVVLLHGPPGTGKTSLCK 34
+++ L G G GKT+
Sbjct: 7 KLLAL-GDSGVGKTTFLY 23
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 24.2 bits (51), Expect = 3.4
Identities = 5/18 (27%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 17 RVVLLHGPPGTGKTSLCK 34
++ + G G GK++L
Sbjct: 4 KLAIF-GRAGVGKSALVV 20
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 222
Score = 24.5 bits (52), Expect = 3.4
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 18 VVLLHGPPGTGKTSL 32
V LL G G GKT+L
Sbjct: 5 VTLLTGFLGAGKTTL 19
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 24.2 bits (51), Expect = 3.5
Identities = 6/18 (33%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 17 RVVLLHGPPGTGKTSLCK 34
++V++ G G GK++L
Sbjct: 8 KLVVV-GGGGVGKSALTI 24
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 24.3 bits (51), Expect = 3.6
Identities = 9/18 (50%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 17 RVVLLHGPPGTGKTSLCK 34
RVVL+ G G GK++L
Sbjct: 5 RVVLI-GEQGVGKSTLAN 21
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 24.1 bits (52), Expect = 3.6
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 18 VVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAI 50
++L GP G GKT+ + +A L+ P
Sbjct: 31 FMILLGPSGCGKTTTLRMIA-----GLEEPSRG 58
>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase
{Bacteriophage T4 [TaxId: 10665]}
Length = 241
Score = 24.1 bits (51), Expect = 3.6
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSI 42
+++ L G +GK + + S
Sbjct: 2 KLIFLSGVKRSGKDTTADFIMSNYSA 27
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 24.2 bits (51), Expect = 3.8
Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 1/83 (1%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAFLD 76
RV + G G GK+SL + P + + L
Sbjct: 4 RVAVF-GAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQ 62
Query: 77 RADIKQYIGFPSAAAIFNIFSSC 99
+++ A I +
Sbjct: 63 FPAMQRLSISKGHAFILVYSITS 85
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top
tamarin (Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 24.1 bits (51), Expect = 3.8
Identities = 6/18 (33%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 17 RVVLLHGPPGTGKTSLCK 34
+V+++ G G GK++L
Sbjct: 6 KVIMV-GSGGVGKSALTL 22
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 24.1 bits (52), Expect = 4.0
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 18 VVLLHGPPGTGKTSLCKAVA 37
+V L G G GKT+ A+A
Sbjct: 34 IVTLIGANGAGKTTTLSAIA 53
>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase)
{Trypanosoma cruzi [TaxId: 5693]}
Length = 323
Score = 24.1 bits (52), Expect = 4.0
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 18 VVLLHGPPGTGKTSLC 33
V + G GTGKT+L
Sbjct: 16 VTVFFGLSGTGKTTLS 31
>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus
thermophilus [TaxId: 274]}
Length = 318
Score = 24.2 bits (52), Expect = 4.1
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 18 VVLLHGPPGTGKTSL 32
V + G GTGKT+L
Sbjct: 16 VAVFFGLSGTGKTTL 30
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 23.9 bits (50), Expect = 4.2
Identities = 6/18 (33%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 17 RVVLLHGPPGTGKTSLCK 34
++ +L G GK+SL
Sbjct: 6 KIAIL-GYRSVGKSSLTI 22
>d1uxoa_ c.69.1.31 (A:) Hypothetical protein YdeN {Bacillus
subtilis [TaxId: 1423]}
Length = 186
Score = 23.9 bits (50), Expect = 4.2
Identities = 4/24 (16%), Positives = 11/24 (45%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKL 40
+V ++HG + + ++L
Sbjct: 3 QVYIIHGYRASSTNHWFPWLKKRL 26
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor
Rho, ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 24.2 bits (52), Expect = 4.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 19 VLLHGPPGTGKTSLCKAVAQ 38
L+ PP GKT L + +AQ
Sbjct: 46 GLIVAPPKAGKTMLLQNIAQ 65
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 24.0 bits (51), Expect = 4.2
Identities = 8/16 (50%), Positives = 11/16 (68%), Gaps = 1/16 (6%)
Query: 17 RVVLLHGPPGTGKTSL 32
++VL+ G G GKT L
Sbjct: 7 KIVLI-GNAGVGKTCL 21
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 23.8 bits (50), Expect = 4.3
Identities = 6/18 (33%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 17 RVVLLHGPPGTGKTSLCK 34
++V++ G G GK++L
Sbjct: 5 KLVVV-GAGGVGKSALTI 21
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 23.8 bits (50), Expect = 4.4
Identities = 8/18 (44%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 17 RVVLLHGPPGTGKTSLCK 34
++V L G GKTSL
Sbjct: 2 KLVFL-GEQSVGKTSLIT 18
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 24.1 bits (52), Expect = 4.4
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49
N ++ GP G GK+++ + R P A
Sbjct: 25 AQPNSIIAFAGPSGGGKSTIFSLLE-----RFYQPTA 56
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 23.8 bits (50), Expect = 4.5
Identities = 7/18 (38%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 17 RVVLLHGPPGTGKTSLCK 34
R+V++ G G GK++L
Sbjct: 7 RLVVV-GGGGVGKSALTI 23
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 23.8 bits (50), Expect = 4.6
Identities = 6/18 (33%), Positives = 9/18 (50%), Gaps = 1/18 (5%)
Query: 17 RVVLLHGPPGTGKTSLCK 34
+ V++ G GKT L
Sbjct: 5 KCVVV-GDGAVGKTCLLI 21
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 23.8 bits (50), Expect = 4.6
Identities = 7/23 (30%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQK 39
R+V++ G P GK++L + +
Sbjct: 2 RMVIV-GKPNVGKSTLLNRLLNE 23
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 23.8 bits (50), Expect = 4.7
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 19 VLLHGPPGTGKTSL 32
V++ G GKT++
Sbjct: 18 VIIVGLDNAGKTTI 31
>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase)
{Escherichia coli [TaxId: 562]}
Length = 313
Score = 23.8 bits (51), Expect = 4.7
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 18 VVLLHGPPGTGKTSL 32
V + G GTGKT+L
Sbjct: 16 VAVFFGLSGTGKTTL 30
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 169
Score = 23.8 bits (50), Expect = 4.7
Identities = 6/18 (33%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 17 RVVLLHGPPGTGKTSLCK 34
++V++ G G GK++L
Sbjct: 6 KLVVV-GDGGVGKSALTI 22
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 23.8 bits (50), Expect = 4.9
Identities = 9/18 (50%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Query: 17 RVVLLHGPPGTGKTSLCK 34
++VL+ G GTGKT+ K
Sbjct: 5 KLVLV-GDGGTGKTTFVK 21
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 23.8 bits (51), Expect = 5.0
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 18 VVLLHGPPGTGKTSLCKAVA 37
+ L GP G GKT+ + ++
Sbjct: 30 IFGLIGPNGAGKTTTLRIIS 49
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 23.8 bits (50), Expect = 5.1
Identities = 6/18 (33%), Positives = 9/18 (50%), Gaps = 1/18 (5%)
Query: 17 RVVLLHGPPGTGKTSLCK 34
+ V++ G GKT L
Sbjct: 7 KCVVV-GDGAVGKTCLLI 23
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 23.7 bits (51), Expect = 5.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 18 VVLLHGPPGTGKTSLCKAVA 37
++ L GP G GK++L +A
Sbjct: 27 ILHLVGPNGAGKSTLLARMA 46
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 23.7 bits (50), Expect = 5.2
Identities = 8/18 (44%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 17 RVVLLHGPPGTGKTSLCK 34
+VV+L G G GK++L
Sbjct: 5 KVVVL-GSGGVGKSALTV 21
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 23.6 bits (50), Expect = 5.2
Identities = 6/16 (37%), Positives = 11/16 (68%), Gaps = 1/16 (6%)
Query: 17 RVVLLHGPPGTGKTSL 32
+++L+ G G GKT +
Sbjct: 8 KLLLI-GDSGVGKTCV 22
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 23.7 bits (50), Expect = 5.2
Identities = 8/16 (50%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
Query: 17 RVVLLHGPPGTGKTSL 32
+VVL+ G G GK++L
Sbjct: 6 KVVLI-GDSGVGKSNL 20
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 23.6 bits (51), Expect = 5.3
Identities = 7/34 (20%), Positives = 15/34 (44%), Gaps = 5/34 (14%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49
V+ + G G+GK++ + + L+ P
Sbjct: 28 GDVISIIGSSGSGKSTFLRCIN-----FLEKPSE 56
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 23.8 bits (50), Expect = 5.6
Identities = 7/18 (38%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 17 RVVLLHGPPGTGKTSLCK 34
++V+L G G GK++L
Sbjct: 5 KLVVL-GSGGVGKSALTV 21
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 23.5 bits (49), Expect = 5.7
Identities = 7/18 (38%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 17 RVVLLHGPPGTGKTSLCK 34
++VLL G GK+S+
Sbjct: 5 KLVLL-GEAAVGKSSIVL 21
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 23.7 bits (50), Expect = 5.8
Identities = 13/86 (15%), Positives = 27/86 (31%), Gaps = 1/86 (1%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQAIFFKKYPNVLIFTTSNLTGAIDLAFLD 76
+++L+ G G GK+ L + K V + + D A +
Sbjct: 8 KLLLI-GNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 66
Query: 77 RADIKQYIGFPSAAAIFNIFSSCVEE 102
R + + I ++ +E
Sbjct: 67 RFRTITSSYYRGSHGIIIVYDVTDQE 92
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 23.7 bits (50), Expect = 6.0
Identities = 5/16 (31%), Positives = 10/16 (62%), Gaps = 1/16 (6%)
Query: 17 RVVLLHGPPGTGKTSL 32
+ +++ G G GK+ L
Sbjct: 6 KYIII-GDMGVGKSCL 20
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 23.5 bits (49), Expect = 6.1
Identities = 6/18 (33%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 17 RVVLLHGPPGTGKTSLCK 34
++V++ G GKT+L
Sbjct: 4 KIVVV-GDSQCGKTALLH 20
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 23.4 bits (49), Expect = 6.1
Identities = 8/18 (44%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 17 RVVLLHGPPGTGKTSLCK 34
+V LL G G GK+S+
Sbjct: 6 KVCLL-GDTGVGKSSIMW 22
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 23.6 bits (51), Expect = 6.2
Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 5/37 (13%)
Query: 13 ISWNRVVLLHGPPGTGKTSLCKAVAQKLSIRLQTPQA 49
I V G G GK++L + R +
Sbjct: 41 IEKGETVAFVGMSGGGKSTLINLIP-----RFYDVTS 72
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 23.4 bits (49), Expect = 6.3
Identities = 6/18 (33%), Positives = 9/18 (50%), Gaps = 1/18 (5%)
Query: 17 RVVLLHGPPGTGKTSLCK 34
+ V++ G GKT L
Sbjct: 11 KCVVV-GDGAVGKTCLLM 27
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 23.5 bits (49), Expect = 6.7
Identities = 8/23 (34%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 17 RVVLLHGPPGTGKTSLCKAVAQK 39
+V ++ G P GK++L A+ K
Sbjct: 10 KVAIV-GRPNVGKSTLFNAILNK 31
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima
[TaxId: 2336]}
Length = 308
Score = 23.5 bits (49), Expect = 7.1
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 16 NRVVLLHGPPGTGKTSLCKAVAQKLSIR 43
+RV + GP G+GK+++ A+ +
Sbjct: 24 DRVTAIVGPNGSGKSNIIDAIKWVFGEQ 51
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 23.6 bits (51), Expect = 7.3
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 19 VLLHGPPGTGKTSLCKAVAQ 38
+ L G G GKT L +
Sbjct: 71 IGLFGGAGVGKTVLIMELIN 90
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 23.5 bits (49), Expect = 7.5
Identities = 5/18 (27%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 17 RVVLLHGPPGTGKTSLCK 34
+++++ G GKT L
Sbjct: 4 KIIVI-GDSNVGKTCLTY 20
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 23.3 bits (49), Expect = 7.6
Identities = 5/18 (27%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 17 RVVLLHGPPGTGKTSLCK 34
+ +++ G G GK+ L
Sbjct: 5 KYIII-GDTGVGKSCLLL 21
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 23.4 bits (49), Expect = 7.6
Identities = 8/18 (44%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 17 RVVLLHGPPGTGKTSLCK 34
++VLL G GK+SL
Sbjct: 8 KLVLL-GESAVGKSSLVL 24
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 23.4 bits (49), Expect = 7.6
Identities = 9/16 (56%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
Query: 17 RVVLLHGPPGTGKTSL 32
+V+LL G G GK+SL
Sbjct: 8 KVILL-GDGGVGKSSL 22
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 23.4 bits (49), Expect = 7.6
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 19 VLLHGPPGTGKTSL 32
+L+ G GKT++
Sbjct: 15 ILMLGLDAAGKTTI 28
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 23.4 bits (49), Expect = 7.8
Identities = 10/16 (62%), Positives = 11/16 (68%), Gaps = 1/16 (6%)
Query: 17 RVVLLHGPPGTGKTSL 32
+VVLL G GKTSL
Sbjct: 5 KVVLL-GEGCVGKTSL 19
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle
domain {Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 23.1 bits (48), Expect = 7.9
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 19 VLLHGPPGTGKTSLCKAVA-QKLSIRLQTP----QAIFFKKYPNVLIFTTSNLTGAIDLA 73
V L G P GK+SL A+ I + + FT +++ G I+ A
Sbjct: 4 VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGA 63
Query: 74 FLDRADIKQYI 84
+ +++
Sbjct: 64 SEGKGLGLEFL 74
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 23.4 bits (49), Expect = 7.9
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 19 VLLHGPPGTGKTSLCK 34
+L+ G G GKT++
Sbjct: 20 ILILGLDGAGKTTILY 35
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 23.1 bits (48), Expect = 8.3
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 19 VLLHGPPGTGKTSLCKAVAQK 39
++ G GK++L + K
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGK 23
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.136 0.401
Gapped
Lambda K H
0.267 0.0443 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 387,122
Number of extensions: 15283
Number of successful extensions: 319
Number of sequences better than 10.0: 1
Number of HSP's gapped: 318
Number of HSP's successfully gapped: 224
Length of query: 105
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 40
Effective length of database: 1,515,146
Effective search space: 60605840
Effective search space used: 60605840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.6 bits)