BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4925
(160 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FUG|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|P Chain P, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|Y Chain Y, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|3I9V|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3I9V|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3IAM|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAM|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAS|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|P Chain P, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|Y Chain Y, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3M9S|9 Chain 9, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|3M9S|G Chain G, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|2YBB|8 Chain 8, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|4HEA|9 Chain 9, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
pdb|4HEA|O Chain O, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
Length = 182
Score = 115 bits (289), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 79/137 (57%), Gaps = 6/137 (4%)
Query: 11 LTEIFRGFFVATGHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAI 70
L + + + ++F +P T+ YP L PRF G H L R+P+G E+CI C LC A
Sbjct: 3 LKALAQSLGITLKYLFSKPVTVPYPDAPVALKPRFHGRHVLTRHPNGLEKCIGCSLCAAA 62
Query: 71 CPAQAITIEAEER------ADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFS 124
CPA AI +E E + G R Y+I+M +CI+CG C+EACP AIV G +FE +
Sbjct: 63 CPAYAIYVEPAENDPENPVSAGERYAKVYEINMLRCIFCGLCEEACPTGAIVLGYDFEMA 122
Query: 125 TESHEELLYNKEKLLSN 141
+ +L+Y KE +L +
Sbjct: 123 DYEYSDLVYGKEDMLVD 139
>pdb|1FCA|A Chain A, Structure Of The Ferredoxin From Clostridium Acidurici:
Model At 1.8 Angstroms Resolution
Length = 55
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 30/59 (50%), Gaps = 10/59 (16%)
Query: 59 ERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVE 117
E CI+C CE CP AI S+ +RY ID CI CG C CPVDA V+
Sbjct: 6 EACISCGACEPECPVDAI----------SQGGSRYVIDADTCIDCGACAGVCPVDAPVQ 54
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 99 KCIYCGFCQEACPVDAIVEG 118
CI CG C+ CPVDAI +G
Sbjct: 7 ACISCGACEPECPVDAISQG 26
>pdb|1FDN|A Chain A, Refined Crystal Structure Of The 2[4fe-4s] Ferredoxin From
Clostridium Acidurici At 1.84 Angstroms Resolution
pdb|2FDN|A Chain A, 2[4fe-4s] Ferredoxin From Clostridium Acidi-Urici
Length = 55
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 28/60 (46%), Gaps = 10/60 (16%)
Query: 58 EERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVE 117
E CI+C CE CP AI S RY ID CI CG C CPVDA V+
Sbjct: 5 NEACISCGACEPECPVNAI----------SSGDDRYVIDADTCIDCGACAGVCPVDAPVQ 54
>pdb|3EUN|A Chain A, Crystal Structure Of The 2[4fe-4s] C57a Ferredoxin Variant
From Allochromatium Vinosum
Length = 82
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 19/90 (21%)
Query: 59 ERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYC------GFCQEACPV 112
+ CI C +CE CP AI S+ Y I+ + C C C E CPV
Sbjct: 6 DECINCDVCEPECPNGAI----------SQGDETYVIEPSLCTECVGHYETSQCVEVCPV 55
Query: 113 DAIVEGPNFEFSTESHEELLYNKEKLLSNG 142
DAI++ P+ E E+ +EL E++ G
Sbjct: 56 DAIIKDPSHE---ETEDELRAKYERITGEG 82
>pdb|1BLU|A Chain A, Structure Of The 2[4fe-4s] Ferredoxin From Chromatium
Vinosum
Length = 82
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 19/90 (21%)
Query: 59 ERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYC------GFCQEACPV 112
+ CI C +CE CP AI S+ Y I+ + C C C E CPV
Sbjct: 6 DECINCDVCEPECPNGAI----------SQGDETYVIEPSLCTECVGHYETSQCVEVCPV 55
Query: 113 DAIVEGPNFEFSTESHEELLYNKEKLLSNG 142
D I++ P+ E E+ +EL E++ G
Sbjct: 56 DCIIKDPSHE---ETEDELRAKYERITGEG 82
>pdb|2ZVS|A Chain A, Crystal Structure Of The 2[4fe-4s] Ferredoxin From
Escherichia Coli
pdb|2ZVS|B Chain B, Crystal Structure Of The 2[4fe-4s] Ferredoxin From
Escherichia Coli
pdb|2ZVS|C Chain C, Crystal Structure Of The 2[4fe-4s] Ferredoxin From
Escherichia Coli
Length = 85
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 21/93 (22%)
Query: 59 ERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYC------GFCQEACPV 112
++CI C +CE CP +AI S Y+I+ KC C CQ+ CP+
Sbjct: 6 KKCINCDMCEPECPNEAI----------SMGDHIYEINSDKCTECVGHYETPTCQKVCPI 55
Query: 113 -DAIVEGPNFEFSTESHEELLYNKEKLLSNGDK 144
+ IV+ P + EE L++K L+ + DK
Sbjct: 56 PNTIVKDPAHVET----EEQLWDKFVLMHHADK 84
>pdb|3EXY|A Chain A, Crystal Structure Of The 2[4fe-4s] Ferredoxin V13g Variant
From Allochromatium Vinosum
Length = 82
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 19/90 (21%)
Query: 59 ERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYC------GFCQEACPV 112
+ CI C CE CP AI S+ Y I+ + C C C E CPV
Sbjct: 6 DECINCDGCEPECPNGAI----------SQGDETYVIEPSLCTECVGHYETSQCVEVCPV 55
Query: 113 DAIVEGPNFEFSTESHEELLYNKEKLLSNG 142
D I++ P+ E E+ +EL E++ G
Sbjct: 56 DCIIKDPSHE---ETEDELRAKYERITGEG 82
>pdb|1CLF|A Chain A, Clostridium Pasteurianum Ferredoxin
Length = 55
Score = 34.7 bits (78), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 59 ERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVE 117
+ C++C C + CP AI S+ + + ID CI CG C CPV A V+
Sbjct: 6 DSCVSCGACASECPVNAI----------SQGDSIFVIDADTCIDCGNCANVCPVGAPVQ 54
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 99 KCIYCGFCQEACPVDAIVEG 118
C+ CG C CPV+AI +G
Sbjct: 7 SCVSCGACASECPVNAISQG 26
>pdb|1B0P|A Chain A, Crystal Structure Of Pyruvate-ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|1B0P|B Chain B, Crystal Structure Of Pyruvate-ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2PDA|A Chain A, Crystal Structure Of The Complex Between
Pyruvate-Ferredoxin Oxidoreductase From Desulfovibrio
Africanus And Pyruvate.
pdb|2PDA|B Chain B, Crystal Structure Of The Complex Between
Pyruvate-Ferredoxin Oxidoreductase From Desulfovibrio
Africanus And Pyruvate.
pdb|1KEK|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase
pdb|1KEK|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase
pdb|2C3M|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2C3M|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2C3O|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C3O|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C3P|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C3P|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C3U|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus, Oxygen Inhibited Form
pdb|2C3U|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus, Oxygen Inhibited Form
pdb|2C3Y|A Chain A, Crystal Structure Of The Radical Form Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C3Y|B Chain B, Crystal Structure Of The Radical Form Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C42|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2C42|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2UZA|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2UZA|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
Length = 1231
Score = 34.3 bits (77), Expect = 0.031, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 17/70 (24%)
Query: 59 ERCIACKLCEAICPAQAI--TIEAEERADGSRRT---------------TRYDIDMTKCI 101
E CI C C +CP AI + EE G+ R I+ C+
Sbjct: 686 ENCIQCNQCAFVCPHSAILPVLAKEEELVGAPANFTALEAKGKELKGYKFRIQINTLDCM 745
Query: 102 YCGFCQEACP 111
CG C + CP
Sbjct: 746 GCGNCADICP 755
>pdb|1DUR|A Chain A, Replacement For 1fdx 2(4fe4s) Ferredoxin From (Now)
Peptostreptococcus Asaccharolyticus
Length = 55
Score = 33.9 bits (76), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 15/65 (23%)
Query: 58 EERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVE 117
+ CIAC C+ CP I + + Y ID CI CG C CPV A
Sbjct: 5 NDSCIACGACKPECPVNCI-----------QEGSIYAIDADSCIDCGSCASVCPVGA--- 50
Query: 118 GPNFE 122
PN E
Sbjct: 51 -PNPE 54
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 99 KCIYCGFCQEACPVDAIVEGPNFEFSTES 127
CI CG C+ CPV+ I EG + +S
Sbjct: 7 SCIACGACKPECPVNCIQEGSIYAIDADS 35
>pdb|1HFE|L Chain L, 1.6 A Resolution Structure Of The Fe-Only Hydrogenase From
Desulfovibrio Desulfuricans
pdb|1HFE|M Chain M, 1.6 A Resolution Structure Of The Fe-Only Hydrogenase From
Desulfovibrio Desulfuricans
Length = 421
Score = 33.5 bits (75), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
Query: 58 EERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVE 117
E +CI C C CP AI E E + CI CG C CP +AI E
Sbjct: 32 EAKCIGCDTCSQYCPTAAIFGEMGEPHSIPH--------IEACINCGQCLTHCPENAIYE 83
Query: 118 GPNF 121
++
Sbjct: 84 AQSW 87
Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 95 IDMTKCIYCGFCQEACPVDAI 115
ID KCI C C + CP AI
Sbjct: 30 IDEAKCIGCDTCSQYCPTAAI 50
>pdb|1E08|A Chain A, Structural Model Of The [fe]-HydrogenaseCYTOCHROME C553
Complex Combining Nmr And Soft-Docking
pdb|1GX7|A Chain A, Best Model Of The Electron Transfer Complex Between
Cytochrome C3 And [fe]-Hydrogenase
Length = 371
Score = 33.1 bits (74), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
Query: 58 EERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVE 117
E +CI C C CP AI E E + CI CG C CP +AI E
Sbjct: 6 EAKCIGCDTCSQYCPTAAIFGEMGEPHSIPH--------IEACINCGQCLTHCPENAIYE 57
Query: 118 GPNF 121
++
Sbjct: 58 AQSW 61
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 7/66 (10%)
Query: 95 IDMTKCIYCGFCQEACPVDAIV-------EGPNFEFSTESHEELLYNKEKLLSNGDKWES 147
ID KCI C C + CP AI P+ E + L + E + W
Sbjct: 4 IDEAKCIGCDTCSQYCPTAAIFGEMGEPHSIPHIEACINCGQCLTHCPENAIYEAQSWVP 63
Query: 148 EIASNI 153
E+ +
Sbjct: 64 EVEKKL 69
>pdb|2FGO|A Chain A, Structure Of The 2[4fe-4s] Ferredoxin From Pseudomonas
Aeruginosa
Length = 82
Score = 32.7 bits (73), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 19/86 (22%)
Query: 59 ERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYC------GFCQEACPV 112
+ CI C +CE CP AI S+ Y ID C C CQ+ CPV
Sbjct: 6 DDCINCDVCEPECPNGAI----------SQGEEIYVIDPNLCTECVGHYDEPQCQQVCPV 55
Query: 113 DAIVEGPNFEFSTESHEELLYNKEKL 138
D I P + + ES ++L+ K+
Sbjct: 56 DCI---PLDDANVESKDQLMEKYRKI 78
>pdb|1FD2|A Chain A, Site-Directed Mutagenesis Of Azotobacter Vinelandii
Ferredoxin I. (Fe-S) Cluster-Driven Protein
Rearrangement
Length = 106
Score = 32.7 bits (73), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 37 EKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERAD 85
E P+ + G + L +P + CI C LCE CPAQAI E E D
Sbjct: 18 EVAPVDCFYEGPNFLVIHP---DECIDCALCEPECPAQAIFSEDEVPED 63
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 99 KCIYCGF--CQEACPVDAIVEGPNF 121
CI C + C E PVD EGPNF
Sbjct: 7 NCIKCKYTDCVEVAPVDCFYEGPNF 31
>pdb|1FRX|A Chain A, Structure And Properties Of C20s Fdi Mutant
Length = 106
Score = 32.7 bits (73), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 37 EKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERAD 85
E P+ + G + L +P + CI C LCE CPAQAI E E D
Sbjct: 18 EVSPVDCFYEGPNFLVIHP---DECIDCALCEPECPAQAIFSEDEVPED 63
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 99 KCIYCGF--CQEACPVDAIVEGPNF 121
CI C + C E PVD EGPNF
Sbjct: 7 NCIKCKYTDCVEVSPVDCFYEGPNF 31
>pdb|1F5C|A Chain A, Crystal Structure Of F25h Ferredoxin 1 Mutant From
Azotobacter Vinelandii At 1.75 Angstrom Resolution
Length = 106
Score = 32.7 bits (73), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 36 FEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERAD 85
E P+ + G + L +P + CI C LCE CPAQAI E E D
Sbjct: 17 VEVCPVDCHYEGPNFLVIHP---DECIDCALCEPECPAQAIFSEDEVPED 63
Score = 29.3 bits (64), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 99 KCIYCGF--CQEACPVDAIVEGPNF 121
CI C + C E CPVD EGPNF
Sbjct: 7 NCIKCKYTDCVEVCPVDCHYEGPNF 31
>pdb|1G3O|A Chain A, Crystal Structure Of V19e Mutant Of Ferredoxin I
Length = 106
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 37 EKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERAD 85
E+ P+ + G + L +P + CI C LCE CPAQAI E E D
Sbjct: 18 EECPVDCFYEGPNFLVIHP---DECIDCALCEPECPAQAIFSEDEVPED 63
Score = 30.0 bits (66), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 99 KCIYCGF--CQEACPVDAIVEGPNF 121
CI C + C E CPVD EGPNF
Sbjct: 7 NCIKCKYTDCVEECPVDCFYEGPNF 31
>pdb|1FRJ|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
Individual Surface Charges And The [4fe-4s] Cluster
Reduction Potential
Length = 106
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 99 KCIYCGF--CQEACPVDAIVEGPNF 121
CI C + C E CPVD I EGPNF
Sbjct: 7 NCIKCKYTDCVEVCPVDCIYEGPNF 31
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 36 FEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERAD 85
E P+ + G + L +P + CI C LCE CPAQAI E E D
Sbjct: 17 VEVCPVDCIYEGPNFLVIHP---DECIDCALCEPECPAQAIFSEDEVPED 63
>pdb|1G6B|A Chain A, Crystal Structure Of P47s Mutant Of Ferredoxin I
Length = 106
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 37 EKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERAD 85
E P+ + G + L +P + CI C LCE+ CPAQAI E E D
Sbjct: 18 EVCPVDCFYEGPNFLVIHP---DECIDCALCESECPAQAIFSEDEVPED 63
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 99 KCIYCGF--CQEACPVDAIVEGPNF 121
CI C + C E CPVD EGPNF
Sbjct: 7 NCIKCKYTDCVEVCPVDCFYEGPNF 31
>pdb|2FD2|A Chain A, Crystallographic Analysis Of Two Site-Directed Mutants
Of Azotobacter Vinelandii Ferredoxin
Length = 106
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 37 EKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERAD 85
E P+ + G + L +P + CI C LCE CPAQAI E E D
Sbjct: 18 EVCPVDAFYEGPNFLVIHP---DECIDCALCEPECPAQAIFSEDEVPED 63
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 99 KCIYCGF--CQEACPVDAIVEGPNF 121
CI C + C E CPVDA EGPNF
Sbjct: 7 NCIKCKYTDCVEVCPVDAFYEGPNF 31
>pdb|2V4J|B Chain B, The Crystal Structure Of Desulfovibrio Vulgaris
Dissimilatory Sulfite Reductase Bound To Dsrc Provides
Novel Insights Into The Mechanism Of Sulfate Respiration
pdb|2V4J|E Chain E, The Crystal Structure Of Desulfovibrio Vulgaris
Dissimilatory Sulfite Reductase Bound To Dsrc Provides
Novel Insights Into The Mechanism Of Sulfate Respiration
Length = 381
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 47 GEHALRRYPSGEERCIACKLCE-----AICPAQAITIEAEERADGSRRTTRYDIDMTKCI 101
G + R P + +LCE A CP A+ E D ++ I +C+
Sbjct: 202 GVVGIHRKPPMIDHEWTDQLCEIPLAVASCPTAAVRPTKLEIGD--KKVNTIAIKNERCM 259
Query: 102 YCGFCQEACPVDAIVEG 118
YCG C CP I +G
Sbjct: 260 YCGNCYTMCPALPISDG 276
>pdb|1FRI|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
Individual Surface Charges And The [4fe-4s] Cluster
Reduction Potential
Length = 106
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 37 EKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERAD 85
E P++ + G + L +P + CI C LCE CPAQAI E E D
Sbjct: 18 EVCPVNCFYEGPNFLVIHP---DECIDCALCEPECPAQAIFSEDEVPED 63
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 99 KCIYCGF--CQEACPVDAIVEGPNF 121
CI C + C E CPV+ EGPNF
Sbjct: 7 NCIKCKYTDCVEVCPVNCFYEGPNF 31
>pdb|1A6L|A Chain A, T14c Mutant Of Azotobacter Vinelandii Fdi
Length = 106
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 99 KCIYCGFCQEACPVDAIVEGPNF 121
KC YC C E CPVD EGPNF
Sbjct: 10 KCKYCD-CVEVCPVDCFYEGPNF 31
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 37 EKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERAD 85
E P+ + G + L +P + CI C LCE CPAQAI E E D
Sbjct: 18 EVCPVDCFYEGPNFLVIHP---DECIDCALCEPECPAQAIFSEDEVPED 63
>pdb|1FTC|A Chain A, Y13c Mutant Of Azotobacter Vinelandii Fdi
pdb|1FTC|B Chain B, Y13c Mutant Of Azotobacter Vinelandii Fdi
Length = 106
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 19 FVATGHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITI 78
FV T + K T E P+ + G + L +P + CI C LCE CPAQAI
Sbjct: 2 FVVTDNCIKCKXTDCV--EVCPVDCFYEGPNFLVIHP---DECIDCALCEPECPAQAIFS 56
Query: 79 EAEERAD 85
E E D
Sbjct: 57 EDEVPED 63
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 99 KCIYCGF--CQEACPVDAIVEGPNF 121
CI C C E CPVD EGPNF
Sbjct: 7 NCIKCKXTDCVEVCPVDCFYEGPNF 31
>pdb|1B0T|A Chain A, D15kK84D MUTANT OF AZOTOBACTER VINELANDII FDI
Length = 106
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 19 FVATGHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITI 78
FV T + K E P+ + G + L +P + CI C LCE CPAQAI
Sbjct: 2 FVVTDNCIK--CKYTKCVEVCPVDCFYEGPNFLVIHP---DECIDCALCEPECPAQAIFS 56
Query: 79 EAEERAD 85
E E D
Sbjct: 57 EDEVPED 63
Score = 30.4 bits (67), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 99 KCIYCGF--CQEACPVDAIVEGPNF 121
CI C + C E CPVD EGPNF
Sbjct: 7 NCIKCKYTKCVEVCPVDCFYEGPNF 31
>pdb|1FDD|A Chain A, Azotobacter Vinelandii Ferredoxin I: Aspartate 15
Facilitates Proton Transfer To The Reduced [3fe-4s]
Cluster
Length = 106
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 19 FVATGHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITI 78
FV T + K E P+ + G + L +P + CI C LCE CPAQAI
Sbjct: 2 FVVTDNCIK--CKYTNCVEVCPVDCFYEGPNFLVIHP---DECIDCALCEPECPAQAIFS 56
Query: 79 EAEERAD 85
E E D
Sbjct: 57 EDEVPED 63
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 99 KCIYCGF--CQEACPVDAIVEGPNF 121
CI C + C E CPVD EGPNF
Sbjct: 7 NCIKCKYTNCVEVCPVDCFYEGPNF 31
>pdb|1D3W|A Chain A, Crystal Structure Of Ferredoxin 1 D15e Mutant From
Azotobacter Vinelandii At 1.7 Angstrom Resolution
Length = 106
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 37 EKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERAD 85
E P+ + G + L +P + CI C LCE CPAQAI E E D
Sbjct: 18 EVCPVDCFYEGPNFLVIHP---DECIDCALCEPECPAQAIFSEDEVPED 63
Score = 30.4 bits (67), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 99 KCIYCGF--CQEACPVDAIVEGPNF 121
CI C + C E CPVD EGPNF
Sbjct: 7 NCIKCKYTECVEVCPVDCFYEGPNF 31
>pdb|1AXQ|A Chain A, Ferricyanide Oxidized Fdi
pdb|1FDA|A Chain A, Crystal Structures Of Oxidized And Reduced Azotobacter
Vinelandii Ferredoxin At Ph 8 And Ph 6
pdb|1FDB|A Chain A, Crystal Structures Of Oxidized And Reduced Azotobacter
Vinelandii Ferredoxin At Ph 8 And Ph 6
pdb|1FER|A Chain A, Structure At Ph 6.5 Of Ferredoxin I From Azotobacter
Vinelandii At 2.3 Angstroms Resolution
pdb|5FD1|A Chain A, Crystal Structures Of Oxidized And Reduced Azotobacter
Vinelandii Ferredoxin At Ph 8 And Ph 6
pdb|6FD1|A Chain A, 7-Fe Ferredoxin From Azotobacter Vinelandii Low
Temperature, 1.35 A
pdb|7FD1|A Chain A, 7-Fe Ferredoxin From Azotobacter Vinelandii At Ph 8.5,
100 K, 1.35 A
pdb|7FDR|A Chain A, 7-Fe Ferredoxin From Azotobacter Vinelandii, Na
Dithionite Reduced, Ph 8.5, 1.4a Resolution, 100 K
pdb|6FDR|A Chain A, 7-Fe Ferredoxin From Azotobacter Vinelandii At 100k, Na
Dithionite Reduced At Ph 8.5, Resolution 1.4 A
Length = 106
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 37 EKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERAD 85
E P+ + G + L +P + CI C LCE CPAQAI E E D
Sbjct: 18 EVCPVDCFYEGPNFLVIHP---DECIDCALCEPECPAQAIFSEDEVPED 63
Score = 30.4 bits (67), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 99 KCIYCGF--CQEACPVDAIVEGPNF 121
CI C + C E CPVD EGPNF
Sbjct: 7 NCIKCKYTDCVEVCPVDCFYEGPNF 31
>pdb|1FRL|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
Individual Surface Charges And The [4fe-4s] Cluster
Reduction Potential
Length = 106
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 37 EKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERAD 85
E P+ + G + L +P + CI C LCE CPAQAI E E D
Sbjct: 18 EVCPVDCFYEGPNFLVIHP---DSCIDCALCEPECPAQAIFSEDEVPED 63
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 99 KCIYCGF--CQEACPVDAIVEGPNF 121
CI C + C E CPVD EGPNF
Sbjct: 7 NCIKCKYTDCVEVCPVDCFYEGPNF 31
>pdb|1FRH|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
Individual Surface Charges And The [4fe-4s] Cluster
Reduction Potential
Length = 106
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 37 EKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERAD 85
E P+ + G + L +P + CI C LCE CPAQAI E E D
Sbjct: 18 EVCPVDCFYEGPNFLVIHP---DECIDCALCEPECPAQAIFSEDEVPED 63
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 99 KCIYCGF--CQEACPVDAIVEGPNF 121
CI C + C E CPVD EGPNF
Sbjct: 7 NCIKCKYTDCVEVCPVDCFYEGPNF 31
>pdb|1F5B|A Chain A, Crystal Structure Of F2h Ferredoxin 1 Mutant From
Azotobacter Vinelandii At 1.75 Angstrom Resolution
Length = 106
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 36 FEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERAD 85
E P+ + G + L +P + CI C LCE CPAQAI E E D
Sbjct: 17 VEVCPVDCFYEGPNFLVIHP---DECIDCALCEPECPAQAIFSEDEVPED 63
Score = 30.4 bits (67), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 99 KCIYCGF--CQEACPVDAIVEGPNF 121
CI C + C E CPVD EGPNF
Sbjct: 7 NCIKCKYTDCVEVCPVDCFYEGPNF 31
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 31.6 bits (70), Expect = 0.21, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 13/55 (23%)
Query: 66 LCEAICP-----AQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 115
LCE +CP +AI I+ E + I C CG C CP +AI
Sbjct: 24 LCERVCPVNRMGGEAIIIDEE--------NYKPIIQEASCTGCGICVHKCPFNAI 70
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 31.6 bits (70), Expect = 0.21, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 13/55 (23%)
Query: 66 LCEAICP-----AQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 115
LCE +CP +AI I+ E + I C CG C CP +AI
Sbjct: 38 LCERVCPVNRMGGEAIIIDEE--------NYKPIIQEASCTGCGICVHKCPFNAI 84
>pdb|1RGV|A Chain A, Crystal Structure Of The Ferredoxin From Thauera Aromatica
Length = 80
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 19/86 (22%)
Query: 59 ERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYC------GFCQEACPV 112
+ C AC C CP +AIT Y ID TKC C C+ CP
Sbjct: 6 DDCTACDACVEECPNEAIT----------PGDPIYVIDPTKCSECVGAFDEPQCRLVCPA 55
Query: 113 DAIVEGPNFEFSTESHEELLYNKEKL 138
D I + P++ E+ EEL ++L
Sbjct: 56 DCIPDNPDYR---ETREELQEKYDRL 78
>pdb|3MMC|B Chain B, Structure Of The Dissimilatory Sulfite Reductase From
Archaeoglobus Fulgidus
pdb|3MMC|E Chain E, Structure Of The Dissimilatory Sulfite Reductase From
Archaeoglobus Fulgidus
pdb|3MM5|B Chain B, Dissimilatory Sulfite Reductase In Complex With The
Substrate Sulfite
pdb|3MM5|E Chain E, Dissimilatory Sulfite Reductase In Complex With The
Substrate Sulfite
pdb|3MM6|B Chain B, Dissimilatory Sulfite Reductase Cyanide Complex
pdb|3MM6|E Chain E, Dissimilatory Sulfite Reductase Cyanide Complex
pdb|3MM7|B Chain B, Dissimilatory Sulfite Reductase Carbon Monoxide Complex
pdb|3MM7|E Chain E, Dissimilatory Sulfite Reductase Carbon Monoxide Complex
pdb|3MM8|B Chain B, Dissimilatory Sulfite Reductase Nitrate Complex
pdb|3MM8|E Chain E, Dissimilatory Sulfite Reductase Nitrate Complex
pdb|3MM9|B Chain B, Dissimilatory Sulfite Reductase Nitrite Complex
pdb|3MM9|E Chain E, Dissimilatory Sulfite Reductase Nitrite Complex
pdb|3MMA|B Chain B, Dissimilatory Sulfite Reductase Phosphate Complex
pdb|3MMA|E Chain E, Dissimilatory Sulfite Reductase Phosphate Complex
pdb|3MMB|B Chain B, Dissimilatory Sulfite Reductase In Complex With The
Endproduct Sulfide
pdb|3MMB|E Chain E, Dissimilatory Sulfite Reductase In Complex With The
Endproduct Sulfide
Length = 366
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 13/52 (25%)
Query: 65 KLCE-----AICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACP 111
K CE A CP A+ + D +T + D++ KC+YCG C CP
Sbjct: 209 KTCEIPSTVAACPTGAL------KPDMKNKTIKVDVE--KCMYCGNCYTMCP 252
>pdb|1FF2|A Chain A, Crystal Structure Of The C42d Mutant Of Azotobacter
Vinelandii 7fe Ferredoxin (Fdi)
Length = 106
Score = 30.8 bits (68), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 99 KCIYCGF--CQEACPVDAIVEGPNF 121
CI C + C E CPVD EGPNF
Sbjct: 7 NCIKCKYTDCVEVCPVDCFYEGPNF 31
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 37 EKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERAD 85
E P+ + G + L +P + CI LCE CPAQAI E E D
Sbjct: 18 EVCPVDCFYEGPNFLVIHP---DECIDDALCEPECPAQAIFSEDEVPED 63
>pdb|1PC4|A Chain A, Crystal Structure Of The P50a Mutant Of Ferredoxin I At
1.65 A Resolution
Length = 107
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 99 KCIYCGF--CQEACPVDAIVEGPNF 121
CI C + C E CPVD EGPNF
Sbjct: 8 NCIKCKYTDCVEVCPVDCFYEGPNF 32
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 37 EKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERAD 85
E P+ + G + L +P + CI C LCE C AQAI E E D
Sbjct: 19 EVCPVDCFYEGPNFLVIHP---DECIDCALCEPECAAQAIFSEDEVPED 64
>pdb|1FEH|A Chain A, Fe-Only Hydrogenase From Clostridium Pasteurianum
pdb|1C4A|A Chain A, Binding Of Exogenously Added Carbon Monoxide At The Active
Site Of The Fe-Only Hydrogenase (Cpi) From Clostridium
Pasteurianum
pdb|1C4C|A Chain A, Binding Of Exogenously Added Carbon Monoxide At The Active
Site Of The Fe-Only Hydrogenase (Cpi) From Clostridium
Pasteurianum
pdb|3C8Y|A Chain A, 1.39 Angstrom Crystal Structure Of Fe-Only Hydrogenase
Length = 574
Score = 30.8 bits (68), Expect = 0.37, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 7/85 (8%)
Query: 40 PLSPRFRGEHALRRYPS---GEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYD-- 94
P P+ + E+ R S +C+ C C C T + + +
Sbjct: 123 PFLPKDKTEYVDERSKSLTVDRTKCLLCGRCVNACGKNTETYAMKFLNKNGKTIIGAEDE 182
Query: 95 --IDMTKCIYCGFCQEACPVDAIVE 117
D T C+ CG C ACPV A+ E
Sbjct: 183 KCFDDTNCLLCGQCIIACPVAALSE 207
>pdb|1PC5|A Chain A, Crystal Structure Of The P50g Mutant Of Ferredoxin I At
1.8 A Resolution
Length = 107
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 99 KCIYCGF--CQEACPVDAIVEGPNF 121
CI C + C E CPVD EGPNF
Sbjct: 8 NCIKCKYTDCVEVCPVDCFYEGPNF 32
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 37 EKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERAD 85
E P+ + G + L +P + CI C LCE C AQAI E E D
Sbjct: 19 EVCPVDCFYEGPNFLVIHP---DECIDCALCEPECGAQAIFSEDEVPED 64
>pdb|1FRM|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
Individual Surface Charges And The [4fe-4s] Cluster
Reduction Potential
Length = 106
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 99 KCIYCGF--CQEACPVDAIVEGPNF 121
CI C + C E CPVD EGPNF
Sbjct: 7 NCIKCKYTDCVEVCPVDCFYEGPNF 31
Score = 29.6 bits (65), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 37 EKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERAD 85
E P+ + G + L +P + CI C LC CPAQAI E E D
Sbjct: 18 EVCPVDCFYEGPNFLVIHP---DECIDCALCAPECPAQAIFSEDEVPED 63
>pdb|1B0V|A Chain A, I40n Mutant Of Azotobacter Vinelandii Fdi
pdb|1B0V|B Chain B, I40n Mutant Of Azotobacter Vinelandii Fdi
pdb|1B0V|C Chain C, I40n Mutant Of Azotobacter Vinelandii Fdi
pdb|1B0V|D Chain D, I40n Mutant Of Azotobacter Vinelandii Fdi
Length = 106
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 99 KCIYCGF--CQEACPVDAIVEGPNF 121
CI C + C E CPVD EGPNF
Sbjct: 7 NCIKCKYTDCVEVCPVDCFYEGPNF 31
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 37 EKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERAD 85
E P+ + G + L +P + C C LCE CPAQAI E E D
Sbjct: 18 EVCPVDCFYEGPNFLVIHP---DECNDCALCEPECPAQAIFSEDEVPED 63
>pdb|1FRK|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
Individual Surface Charges And The [4fe-4s] Cluster
Reduction Potential
Length = 106
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 99 KCIYCGF--CQEACPVDAIVEGPNF 121
CI C + C E CPVD EGPNF
Sbjct: 7 NCIKCKYTDCVEVCPVDCFYEGPNF 31
Score = 30.4 bits (67), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 37 EKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERAD 85
E P+ + G + L P + CI C LCE CPAQAI E E D
Sbjct: 18 EVCPVDCFYEGPNFLVIDP---DECIDCALCEPECPAQAIFSEDEVPED 63
>pdb|1GAO|A Chain A, Crystal Structure Of The L44s Mutant Of Ferredoxin I
pdb|1GAO|B Chain B, Crystal Structure Of The L44s Mutant Of Ferredoxin I
pdb|1GAO|C Chain C, Crystal Structure Of The L44s Mutant Of Ferredoxin I
pdb|1GAO|D Chain D, Crystal Structure Of The L44s Mutant Of Ferredoxin I
Length = 106
Score = 30.4 bits (67), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 99 KCIYCGF--CQEACPVDAIVEGPNF 121
CI C + C E CPVD EGPNF
Sbjct: 7 NCIKCKYTDCVEVCPVDCFYEGPNF 31
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 37 EKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERAD 85
E P+ + G + L +P + CI C CE CPAQAI E E D
Sbjct: 18 EVCPVDCFYEGPNFLVIHP---DECIDCASCEPECPAQAIFSEDEVPED 63
>pdb|3OR2|B Chain B, Crystal Structure Of Dissimilatory Sulfite Reductase Ii
(Dsrii)
pdb|3OR2|E Chain E, Crystal Structure Of Dissimilatory Sulfite Reductase Ii
(Dsrii)
Length = 385
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 66 LCEAICPAQAIT-IEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 118
L A CP A+ I AE ++ I+ +C+YCG C CP + +G
Sbjct: 225 LAVAACPTAAVKPITAEVNG---QKVKSVAINNDRCMYCGNCYTMCPALPLSDG 275
>pdb|3OR1|B Chain B, Crystal Structure Of Dissimilatory Sulfite Reductase I
(Dsri)
pdb|3OR1|E Chain E, Crystal Structure Of Dissimilatory Sulfite Reductase I
(Dsri)
Length = 386
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 66 LCEAICPAQAIT-IEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 118
L A CP A+ I AE ++ I+ +C+YCG C CP + +G
Sbjct: 226 LAVAACPTAAVKPITAEVNG---QKVKSVAINNDRCMYCGNCYTMCPALPLSDG 276
>pdb|1BQX|A Chain A, Artificial Fe8s8 Ferredoxin: The D13c Variant Of Bacillus
Schlegelii Fe7s8 Ferredoxin
pdb|1BWE|A Chain A, Artificial Fe8s8 Ferredoxin: The D13c Variant Of Bacillus
Schlegelii Fe7s8 Ferredoxin
Length = 77
Score = 30.0 bits (66), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 12/59 (20%)
Query: 59 ERCIA--CKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 115
E CI C C +CP I E E++ Y ID CI CG C+ CPV AI
Sbjct: 6 EPCIGTKCASCVEVCPVDCIH-EGEDQ---------YYIDPDVCIDCGACEAVCPVSAI 54
>pdb|2VPW|B Chain B, Polysulfide Reductase With Bound Menaquinone
pdb|2VPW|F Chain F, Polysulfide Reductase With Bound Menaquinone
pdb|2VPX|B Chain B, Polysulfide Reductase With Bound Quinone (uq1)
pdb|2VPX|F Chain F, Polysulfide Reductase With Bound Quinone (uq1)
pdb|2VPY|B Chain B, Polysulfide Reductase With Bound Quinone Inhibitor,
Pentachlorophenol (Pcp)
pdb|2VPY|F Chain F, Polysulfide Reductase With Bound Quinone Inhibitor,
Pentachlorophenol (Pcp)
pdb|2VPZ|B Chain B, Polysulfide Reductase Native Structure
pdb|2VPZ|F Chain F, Polysulfide Reductase Native Structure
Length = 195
Score = 29.6 bits (65), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 11/58 (18%)
Query: 59 ERCIACK--LCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDA 114
E+C+ C+ C +CP A + + DG +D KCI CG C ACP DA
Sbjct: 56 EQCLHCENPPCVPVCPTGA----SYQTKDG-----LVLVDPKKCIACGACIAACPYDA 104
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 29.3 bits (64), Expect = 1.1, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 100 CIYCGFCQEACPVDAIVEGPNFEFSTESH 128
CI CG C + CP DAI + N + E+H
Sbjct: 55 CIGCGICVKKCPFDAI-QIINLPTNLEAH 82
>pdb|1BD6|A Chain A, 7-Fe Ferredoxin From Bacillus Schlegelii, Nmr, Minimized
Average Structure
Length = 77
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 12/59 (20%)
Query: 59 ERCIACK--LCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 115
E CI K C +CP I E E++ Y ID CI CG C+ CPV AI
Sbjct: 6 EPCIGTKDASCVEVCPVDCIH-EGEDQ---------YYIDPDVCIDCGACEAVCPVSAI 54
>pdb|1BC6|A Chain A, 7-Fe Ferredoxin From Bacillus Schlegelii, Nmr, 20
Structures
Length = 77
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 12/59 (20%)
Query: 59 ERCIACK--LCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 115
E CI K C +CP I E E++ Y ID CI CG C+ CPV AI
Sbjct: 6 EPCIGTKDASCVEVCPVDCIH-EGEDQ---------YYIDPDVCIDCGACEAVCPVSAI 54
>pdb|1JNR|B Chain B, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNR|D Chain D, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNZ|B Chain B, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNZ|D Chain D, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|2FJA|B Chain B, Adenosine 5'-Phosphosulfate Reductase In Complex With
Substrate
pdb|2FJA|D Chain D, Adenosine 5'-Phosphosulfate Reductase In Complex With
Substrate
pdb|2FJB|B Chain B, Adenosine-5'-Phosphosulfate Reductase Im Complex With
Products
pdb|2FJB|D Chain D, Adenosine-5'-Phosphosulfate Reductase Im Complex With
Products
pdb|2FJD|B Chain B, Adenosine-5-Phosphosulfate Reductase In Complex With
Sulfite (Covalent Adduct)
pdb|2FJD|D Chain D, Adenosine-5-Phosphosulfate Reductase In Complex With
Sulfite (Covalent Adduct)
pdb|2FJE|B Chain B, Adenosine-5-Phosphosulfate Reductase Oxidized State
pdb|2FJE|D Chain D, Adenosine-5-Phosphosulfate Reductase Oxidized State
Length = 150
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 12/62 (19%)
Query: 59 ERCIACKL-----CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVD 113
E+C CK CE ICP +T++ E + Y+ + C C C + CP
Sbjct: 8 EKCDGCKALERTACEYICPNDLMTLDKE-------KMKAYNREPDMCWECYSCVKMCPQG 60
Query: 114 AI 115
AI
Sbjct: 61 AI 62
>pdb|1KF6|B Chain B, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1KF6|N Chain N, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1KFY|B Chain B, Quinol-fumarate Reductase With Quinol Inhibitor
2-[1-(4-chloro- Phenyl)-ethyl]-4,6-dinitro-phenol
pdb|1KFY|N Chain N, Quinol-fumarate Reductase With Quinol Inhibitor
2-[1-(4-chloro- Phenyl)-ethyl]-4,6-dinitro-phenol
pdb|1L0V|B Chain B, Quinol-Fumarate Reductase With Menaquinol Molecules
pdb|1L0V|N Chain N, Quinol-Fumarate Reductase With Menaquinol Molecules
pdb|2B76|B Chain B, E. Coli Quinol Fumarate Reductase Frda E49q Mutation
pdb|2B76|N Chain N, E. Coli Quinol Fumarate Reductase Frda E49q Mutation
pdb|3CIR|B Chain B, E. Coli Quinol Fumarate Reductase Frda T234a Mutation
pdb|3CIR|N Chain N, E. Coli Quinol Fumarate Reductase Frda T234a Mutation
pdb|3P4R|B Chain B, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Glutarate
pdb|3P4R|N Chain N, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Glutarate
pdb|3P4P|B Chain B, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Fumarate
pdb|3P4P|N Chain N, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Fumarate
pdb|3P4Q|B Chain B, Crystal Structure Of Menaquinol:oxidoreductase In Complex
With Oxaloacetate
pdb|3P4Q|N Chain N, Crystal Structure Of Menaquinol:oxidoreductase In Complex
With Oxaloacetate
pdb|3P4S|B Chain B, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With A 3-Nitropropionate Adduct
pdb|3P4S|N Chain N, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With A 3-Nitropropionate Adduct
Length = 243
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 17/68 (25%)
Query: 61 CIACKLCEAICPA----------QAITIE---AEERADGSRRTTRYDID----MTKCIYC 103
CI C LC A CP AIT+ E+ D ++ ++ + C +
Sbjct: 148 CINCGLCYAACPQFGLNPEFIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTFV 207
Query: 104 GFCQEACP 111
G+C E CP
Sbjct: 208 GYCSEVCP 215
>pdb|1H98|A Chain A, New Insights Into Thermostability Of Bacterial
Ferredoxins: High Resolution Crystal Structure Of The
Seven-Iron Ferredoxin From Thermus Thermophilus
Length = 78
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 12/59 (20%)
Query: 59 ERCIACK--LCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 115
E CI K C +CP + I DG ++ I +CI CG C ACPV+AI
Sbjct: 6 EPCIGVKDQSCVEVCPVECIY-------DGG---DQFYIHPEECIDCGACVPACPVNAI 54
>pdb|1VYT|A Chain A, Beta3 Subunit Complexed With Aid
pdb|1VYT|B Chain B, Beta3 Subunit Complexed With Aid
Length = 351
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 9/48 (18%)
Query: 98 TKCIYCGFCQEACPVDAIVEGPNFEFSTESHEELLYNKEKLLSNGDKW 145
T YCG E CPV G NFE ++ L+ KEK + D W
Sbjct: 51 TNVSYCGVLDEECPVQG--SGVNFE-----AKDFLHIKEKY--SNDWW 89
>pdb|1VYU|A Chain A, Beta3 Subunit Of Voltage-Gated Ca2+-Channel
pdb|1VYU|B Chain B, Beta3 Subunit Of Voltage-Gated Ca2+-Channel
Length = 351
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 9/48 (18%)
Query: 98 TKCIYCGFCQEACPVDAIVEGPNFEFSTESHEELLYNKEKLLSNGDKW 145
T YCG E CPV G NFE ++ L+ KEK + D W
Sbjct: 51 TNVSYCGVLDEECPVQG--SGVNFEA-----KDFLHIKEKY--SNDWW 89
>pdb|1XER|A Chain A, Structure Of Ferredoxin
Length = 103
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 55 PSGEERCIACKLCEAICPAQAITIE 79
P E+ CI C C +CP AI ++
Sbjct: 77 PVNEQACIFCMACVNVCPVAAIDVK 101
>pdb|1DWL|A Chain A, The Ferredoxin-Cytochrome Complex Using Heteronuclear Nmr
And Docking Simulation
Length = 59
Score = 26.2 bits (56), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 17/62 (27%)
Query: 59 ERCIACKLCEAICPAQAITIEAEERA-----DGSRRTTRYDIDMTKCIYCGFCQEACPVD 113
E CI C+ C +CP I+ EE+A D + + ID ACPV+
Sbjct: 7 EECIGCESCVELCPEVFAMIDGEEKAMVTAPDSTAECAQDAID------------ACPVE 54
Query: 114 AI 115
AI
Sbjct: 55 AI 56
>pdb|2VKR|A Chain A, 3fe-4s, 4fe-4s Plus Zn Acidianus Ambivalens Ferredoxin
pdb|2VKR|B Chain B, 3fe-4s, 4fe-4s Plus Zn Acidianus Ambivalens Ferredoxin
pdb|2VKR|C Chain C, 3fe-4s, 4fe-4s Plus Zn Acidianus Ambivalens Ferredoxin
pdb|2VKR|D Chain D, 3fe-4s, 4fe-4s Plus Zn Acidianus Ambivalens Ferredoxin
pdb|2VKR|E Chain E, 3fe-4s, 4fe-4s Plus Zn Acidianus Ambivalens Ferredoxin
pdb|2VKR|F Chain F, 3fe-4s, 4fe-4s Plus Zn Acidianus Ambivalens Ferredoxin
pdb|2VKR|G Chain G, 3fe-4s, 4fe-4s Plus Zn Acidianus Ambivalens Ferredoxin
Length = 103
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 55 PSGEERCIACKLCEAICPAQAITIE 79
P E+ CI C C +CP AI ++
Sbjct: 77 PINEQACIFCMACVNVCPVAAIDVK 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,146,262
Number of Sequences: 62578
Number of extensions: 205528
Number of successful extensions: 500
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 325
Number of HSP's gapped (non-prelim): 160
length of query: 160
length of database: 14,973,337
effective HSP length: 91
effective length of query: 69
effective length of database: 9,278,739
effective search space: 640232991
effective search space used: 640232991
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)