Query psy4925
Match_columns 160
No_of_seqs 119 out of 1484
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 21:21:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4925.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4925hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3256|consensus 100.0 6.7E-38 1.5E-42 220.4 8.2 157 4-160 56-212 (212)
2 COG1143 NuoI Formate hydrogenl 100.0 7.9E-29 1.7E-33 179.3 8.7 140 3-147 4-144 (172)
3 PRK05888 NADH dehydrogenase su 99.9 1.7E-22 3.6E-27 146.6 10.0 156 5-160 4-159 (164)
4 TIGR00403 ndhI NADH-plastoquin 99.8 5.4E-20 1.2E-24 135.4 8.6 125 10-139 18-143 (183)
5 TIGR01971 NuoI NADH-quinone ox 99.8 1.1E-19 2.3E-24 125.7 3.6 121 17-137 1-121 (122)
6 CHL00014 ndhI NADH dehydrogena 99.7 7.2E-17 1.6E-21 117.3 10.1 125 9-138 14-139 (167)
7 PRK08348 NADH-plastoquinone ox 99.6 5E-16 1.1E-20 107.1 4.8 99 17-128 4-103 (120)
8 PRK08222 hydrogenase 4 subunit 99.6 3.1E-15 6.7E-20 110.0 5.3 90 27-125 11-100 (181)
9 PRK12387 formate hydrogenlyase 99.5 9.6E-15 2.1E-19 107.4 5.2 96 27-131 11-106 (180)
10 PF14697 Fer4_21: 4Fe-4S diclu 99.4 2.9E-14 6.3E-19 86.2 0.7 56 56-117 3-59 (59)
11 PF13187 Fer4_9: 4Fe-4S diclus 99.4 4.1E-14 8.9E-19 84.3 1.0 55 60-115 1-55 (55)
12 PF12838 Fer4_7: 4Fe-4S diclus 99.4 1.6E-13 3.4E-18 81.0 0.8 52 60-114 1-52 (52)
13 PRK13984 putative oxidoreducta 99.3 2.4E-12 5.2E-17 110.3 4.3 110 21-135 12-123 (604)
14 PRK06273 ferredoxin; Provision 99.3 4E-12 8.6E-17 92.0 3.5 84 56-140 46-133 (165)
15 TIGR02936 fdxN_nitrog ferredox 99.3 1.4E-12 2.9E-17 85.6 0.9 64 55-118 17-90 (91)
16 COG1144 Pyruvate:ferredoxin ox 99.2 1.4E-12 3E-17 83.7 0.2 64 47-119 23-87 (91)
17 TIGR02179 PorD_KorD 2-oxoacid: 99.2 4.7E-12 1E-16 80.7 2.2 56 55-119 21-76 (78)
18 PF13237 Fer4_10: 4Fe-4S diclu 99.2 4E-12 8.7E-17 74.8 0.7 50 54-111 2-52 (52)
19 PRK09624 porD pyuvate ferredox 99.2 5.5E-12 1.2E-16 85.0 1.1 57 55-120 47-103 (105)
20 PRK09623 vorD 2-ketoisovalerat 99.2 1E-11 2.2E-16 83.7 2.2 58 54-120 46-103 (105)
21 CHL00065 psaC photosystem I su 99.2 1.3E-11 2.8E-16 79.3 2.5 61 56-118 6-66 (81)
22 COG3383 Uncharacterized anaero 99.2 1.4E-11 3E-16 105.1 2.8 97 50-146 140-243 (978)
23 PRK09626 oorD 2-oxoglutarate-a 99.1 1.5E-11 3.2E-16 82.6 1.8 65 54-120 11-75 (103)
24 PRK09625 porD pyruvate flavodo 99.1 1.2E-11 2.5E-16 86.8 1.1 56 53-117 53-108 (133)
25 PLN00071 photosystem I subunit 99.1 2.4E-11 5.1E-16 78.1 2.2 62 56-119 6-67 (81)
26 PRK06991 ferredoxin; Provision 99.1 1.8E-11 4E-16 95.0 1.0 58 55-121 81-138 (270)
27 PRK02651 photosystem I subunit 99.1 3.9E-11 8.4E-16 77.0 2.3 61 57-119 7-67 (81)
28 TIGR03048 PS_I_psaC photosyste 99.1 3.6E-11 7.9E-16 77.0 2.1 60 56-117 5-64 (80)
29 TIGR02060 aprB adenosine phosp 99.1 2.4E-11 5.1E-16 84.9 1.0 61 56-123 5-70 (132)
30 TIGR01944 rnfB electron transp 99.1 3.1E-11 6.7E-16 87.6 1.2 56 55-119 109-164 (165)
31 TIGR00397 mauM_napG MauM/NapG 99.1 1.5E-10 3.3E-15 87.2 4.9 58 59-117 53-112 (213)
32 PRK05113 electron transport co 99.1 2.7E-11 5.9E-16 89.8 0.9 57 54-119 109-165 (191)
33 TIGR02494 PFLE_PFLC glycyl-rad 99.1 3.3E-11 7.1E-16 94.8 1.3 63 53-120 42-104 (295)
34 TIGR02163 napH_ ferredoxin-typ 99.1 9.6E-11 2.1E-15 90.6 3.1 87 24-118 166-254 (255)
35 COG1145 NapF Ferredoxin [Energ 99.0 5.1E-11 1.1E-15 78.7 1.3 61 55-120 25-85 (99)
36 PRK09477 napH quinol dehydroge 99.0 8.8E-11 1.9E-15 91.6 2.3 90 25-120 174-264 (271)
37 COG1146 Ferredoxin [Energy pro 99.0 4E-11 8.7E-16 74.5 0.3 59 56-120 5-63 (68)
38 COG1149 MinD superfamily P-loo 99.0 1.2E-10 2.7E-15 89.4 1.7 58 54-120 64-121 (284)
39 PRK08764 ferredoxin; Provision 99.0 1.3E-10 2.9E-15 81.7 1.6 52 57-117 83-134 (135)
40 TIGR00402 napF ferredoxin-type 99.0 2E-10 4.4E-15 76.8 2.3 57 57-120 32-88 (101)
41 PRK07569 bidirectional hydroge 99.0 1.9E-10 4E-15 87.9 2.2 81 52-138 139-224 (234)
42 PF13247 Fer4_11: 4Fe-4S diclu 99.0 7.1E-11 1.5E-15 78.4 -0.5 55 58-120 6-62 (98)
43 PF13247 Fer4_11: 4Fe-4S diclu 99.0 1E-10 2.3E-15 77.6 -0.1 56 52-119 33-97 (98)
44 PF13484 Fer4_16: 4Fe-4S doubl 99.0 1.9E-10 4.2E-15 71.1 1.0 54 60-113 1-67 (67)
45 PRK09476 napG quinol dehydroge 99.0 7.1E-10 1.5E-14 85.6 4.3 61 58-119 58-120 (254)
46 TIGR02700 flavo_MJ0208 archaeo 98.9 2E-10 4.3E-15 87.8 1.2 60 55-124 144-203 (234)
47 PRK14028 pyruvate ferredoxin o 98.9 3.5E-10 7.7E-15 89.8 1.9 66 54-119 242-310 (312)
48 COG0437 HybA Fe-S-cluster-cont 98.9 4.9E-10 1.1E-14 83.2 2.3 60 54-125 95-163 (203)
49 PRK05035 electron transport co 98.9 6.9E-11 1.5E-15 102.2 -3.0 121 2-124 307-434 (695)
50 TIGR02512 Fe_only_hydrog hydro 98.9 4.8E-10 1E-14 91.1 1.5 65 56-120 4-72 (374)
51 PRK00783 DNA-directed RNA poly 98.9 4.9E-10 1.1E-14 87.0 1.2 73 51-133 162-237 (263)
52 TIGR01660 narH nitrate reducta 98.9 3.8E-10 8.3E-15 92.2 0.6 57 56-120 178-236 (492)
53 PRK10194 ferredoxin-type prote 98.9 5.1E-10 1.1E-14 81.0 1.1 55 58-119 33-87 (163)
54 PRK08493 NADH dehydrogenase su 98.9 9.4E-10 2E-14 96.7 2.6 67 51-119 133-225 (819)
55 cd07030 RNAP_D D subunit of Ar 98.9 4.9E-10 1.1E-14 86.9 0.5 65 59-132 169-236 (259)
56 COG1142 HycB Fe-S-cluster-cont 98.9 6.7E-10 1.5E-14 79.9 1.0 51 60-120 52-104 (165)
57 TIGR03478 DMSO_red_II_bet DMSO 98.8 5.5E-10 1.2E-14 87.8 0.3 54 57-118 127-182 (321)
58 TIGR02912 sulfite_red_C sulfit 98.8 1.2E-09 2.5E-14 87.0 2.1 57 54-120 164-223 (314)
59 PRK09898 hypothetical protein; 98.8 6.7E-10 1.5E-14 83.5 0.5 57 56-120 118-176 (208)
60 COG4656 RnfC Predicted NADH:ub 98.8 1.5E-10 3.3E-15 95.5 -3.4 150 2-153 302-458 (529)
61 COG0437 HybA Fe-S-cluster-cont 98.8 1E-09 2.2E-14 81.5 1.1 54 58-120 66-122 (203)
62 TIGR03149 cyt_nit_nrfC cytochr 98.8 1.5E-09 3.2E-14 82.5 1.9 24 56-79 89-114 (225)
63 COG1142 HycB Fe-S-cluster-cont 98.8 6.4E-10 1.4E-14 80.0 -0.1 61 54-122 77-143 (165)
64 TIGR03224 benzo_boxA benzoyl-C 98.8 1.3E-09 2.7E-14 89.7 1.6 55 54-118 5-59 (411)
65 COG2768 Uncharacterized Fe-S c 98.8 1.3E-09 2.9E-14 84.6 1.5 56 54-120 188-243 (354)
66 PRK14993 tetrathionate reducta 98.8 7.7E-10 1.7E-14 85.0 0.2 21 58-78 97-119 (244)
67 PRK10194 ferredoxin-type prote 98.8 2E-09 4.4E-14 77.9 1.4 24 56-79 63-86 (163)
68 PRK10882 hydrogenase 2 protein 98.8 1.2E-09 2.6E-14 87.0 0.3 23 57-79 108-132 (328)
69 TIGR03149 cyt_nit_nrfC cytochr 98.8 1.8E-09 4E-14 82.0 1.1 56 54-121 120-185 (225)
70 COG2878 Predicted NADH:ubiquin 98.8 1.2E-09 2.6E-14 79.0 0.0 56 56-120 112-167 (198)
71 PRK07118 ferredoxin; Validated 98.8 2.3E-09 5E-14 83.9 1.5 53 58-120 212-264 (280)
72 TIGR02176 pyruv_ox_red pyruvat 98.7 3.7E-09 8E-14 96.2 2.4 67 54-120 678-763 (1165)
73 PRK10330 formate dehydrogenase 98.7 2E-09 4.4E-14 79.2 0.5 66 55-120 83-157 (181)
74 TIGR01973 NuoG NADH-quinone ox 98.7 4.5E-09 9.7E-14 90.3 2.6 68 52-120 135-204 (603)
75 TIGR03478 DMSO_red_II_bet DMSO 98.7 2.6E-09 5.6E-14 84.0 0.5 55 54-120 157-220 (321)
76 PF13183 Fer4_8: 4Fe-4S diclus 98.7 7.7E-10 1.7E-14 66.1 -2.2 55 58-113 2-56 (57)
77 PRK09129 NADH dehydrogenase su 98.7 6.5E-09 1.4E-13 91.6 2.1 67 52-119 137-205 (776)
78 COG2221 DsrA Dissimilatory sul 98.7 5.8E-09 1.3E-13 81.7 1.5 49 53-111 166-214 (317)
79 TIGR01582 FDH-beta formate deh 98.7 3.1E-09 6.7E-14 83.2 -0.2 52 58-118 90-144 (283)
80 COG1148 HdrA Heterodisulfide r 98.7 4.6E-09 1E-13 86.5 0.6 51 56-119 558-608 (622)
81 TIGR02951 DMSO_dmsB DMSO reduc 98.7 5.2E-09 1.1E-13 75.6 0.6 55 58-120 61-117 (161)
82 PRK14993 tetrathionate reducta 98.7 4.5E-09 9.7E-14 80.8 0.1 58 55-124 126-192 (244)
83 PRK09898 hypothetical protein; 98.7 8.6E-09 1.9E-13 77.5 1.5 55 54-120 149-203 (208)
84 TIGR01582 FDH-beta formate deh 98.6 2.8E-09 6E-14 83.4 -1.4 59 54-124 119-186 (283)
85 PRK15449 ferredoxin-like prote 98.6 1.2E-08 2.5E-13 67.1 1.6 43 65-116 37-79 (95)
86 PRK07118 ferredoxin; Validated 98.6 9.3E-09 2E-13 80.5 1.2 52 59-120 139-190 (280)
87 PRK08166 NADH dehydrogenase su 98.6 9.5E-09 2.1E-13 91.4 1.3 67 52-119 142-210 (847)
88 TIGR03294 FrhG coenzyme F420 h 98.6 7.5E-09 1.6E-13 78.8 0.6 55 55-119 170-224 (228)
89 PRK07860 NADH dehydrogenase su 98.6 1.5E-08 3.2E-13 89.6 2.1 66 53-119 144-211 (797)
90 PRK12576 succinate dehydrogena 98.6 8.6E-09 1.9E-13 80.7 0.5 106 9-114 102-222 (279)
91 COG1148 HdrA Heterodisulfide r 98.6 7.3E-09 1.6E-13 85.3 -0.1 84 59-142 224-315 (622)
92 PRK09130 NADH dehydrogenase su 98.6 1.4E-08 3.1E-13 88.3 1.6 65 54-119 140-206 (687)
93 TIGR00397 mauM_napG MauM/NapG 98.6 1.5E-08 3.3E-13 76.4 1.5 62 56-119 128-198 (213)
94 PRK09476 napG quinol dehydroge 98.6 1.4E-08 3E-13 78.5 1.2 62 56-117 134-205 (254)
95 PRK08318 dihydropyrimidine deh 98.6 1E-08 2.2E-13 84.6 0.3 58 55-119 338-399 (420)
96 TIGR02951 DMSO_dmsB DMSO reduc 98.6 1.7E-08 3.7E-13 72.9 1.4 56 53-120 89-153 (161)
97 PTZ00305 NADH:ubiquinone oxido 98.6 2.2E-08 4.8E-13 77.9 2.0 67 52-120 205-275 (297)
98 TIGR03287 methan_mark_16 putat 98.6 7.9E-09 1.7E-13 83.6 -0.5 55 55-122 298-354 (391)
99 PRK10882 hydrogenase 2 protein 98.6 1.9E-08 4.1E-13 80.2 1.6 22 95-116 140-161 (328)
100 PRK10330 formate dehydrogenase 98.6 1.8E-08 3.9E-13 74.1 1.3 52 58-119 55-108 (181)
101 COG1034 NuoG NADH dehydrogenas 98.6 2.7E-08 5.9E-13 85.8 2.4 64 56-120 141-206 (693)
102 PRK12771 putative glutamate sy 98.5 2.1E-08 4.6E-13 85.5 1.2 56 56-119 501-562 (564)
103 PRK13795 hypothetical protein; 98.5 2E-08 4.3E-13 86.7 1.0 55 55-117 577-631 (636)
104 PF12837 Fer4_6: 4Fe-4S bindin 98.5 1.9E-08 4.1E-13 49.6 0.4 21 56-76 4-24 (24)
105 PRK07570 succinate dehydrogena 98.5 1.2E-08 2.5E-13 78.6 -0.5 60 55-114 153-228 (250)
106 TIGR00384 dhsB succinate dehyd 98.5 1.2E-08 2.6E-13 77.3 -0.8 58 57-114 136-210 (220)
107 PRK09326 F420H2 dehydrogenase 98.5 4.2E-08 9E-13 78.9 2.2 61 56-116 9-71 (341)
108 PRK12769 putative oxidoreducta 98.5 2.9E-08 6.2E-13 86.1 1.0 64 54-122 80-149 (654)
109 TIGR01660 narH nitrate reducta 98.4 5.3E-08 1.1E-12 79.9 1.0 54 55-120 210-272 (492)
110 TIGR01945 rnfC electron transp 98.4 1.5E-07 3.2E-12 78.1 2.1 58 56-113 360-417 (435)
111 PRK13552 frdB fumarate reducta 98.4 1E-07 2.2E-12 73.1 1.0 106 9-114 98-222 (239)
112 COG0479 FrdB Succinate dehydro 98.4 3E-08 6.4E-13 75.3 -2.0 103 10-114 95-214 (234)
113 PF12837 Fer4_6: 4Fe-4S bindin 98.4 7.8E-08 1.7E-12 47.4 0.1 22 94-115 3-24 (24)
114 PRK12809 putative oxidoreducta 98.4 1.5E-07 3.2E-12 81.5 1.8 24 54-77 80-103 (639)
115 TIGR03315 Se_ygfK putative sel 98.4 1.3E-07 2.8E-12 85.0 1.4 60 57-120 879-943 (1012)
116 PRK12575 succinate dehydrogena 98.4 3E-08 6.5E-13 75.8 -2.3 104 9-114 96-217 (235)
117 PRK08640 sdhB succinate dehydr 98.3 4E-08 8.7E-13 75.7 -1.9 59 56-114 149-225 (249)
118 TIGR02486 RDH reductive dehalo 98.3 1.9E-07 4.1E-12 74.2 1.8 56 59-114 205-280 (314)
119 PRK12769 putative oxidoreducta 98.3 2E-07 4.4E-12 80.8 1.8 54 57-120 52-107 (654)
120 PRK09853 putative selenate red 98.3 2.3E-07 4.9E-12 83.3 2.0 61 56-120 883-948 (1019)
121 PF00037 Fer4: 4Fe-4S binding 98.3 1.5E-07 3.4E-12 46.3 0.5 20 96-115 4-23 (24)
122 PF00037 Fer4: 4Fe-4S binding 98.3 1.3E-07 2.9E-12 46.6 0.2 22 56-77 3-24 (24)
123 TIGR02066 dsrB sulfite reducta 98.3 1.3E-07 2.8E-12 76.0 0.2 52 61-118 183-234 (341)
124 TIGR02745 ccoG_rdxA_fixG cytoc 98.3 4.9E-07 1.1E-11 74.7 3.5 43 58-116 230-272 (434)
125 PLN00129 succinate dehydrogena 98.3 6.4E-08 1.4E-12 75.4 -1.7 105 10-114 138-260 (276)
126 PRK12809 putative oxidoreducta 98.3 2.5E-07 5.3E-12 80.1 1.5 54 57-120 52-107 (639)
127 COG2440 FixX Ferredoxin-like p 98.3 2.3E-07 5.1E-12 60.5 0.5 60 48-116 21-84 (99)
128 TIGR03336 IOR_alpha indolepyru 98.3 2.4E-07 5.2E-12 79.6 0.6 51 52-115 543-595 (595)
129 PRK05950 sdhB succinate dehydr 98.2 8.4E-08 1.8E-12 73.2 -2.0 103 10-114 94-214 (232)
130 PRK12385 fumarate reductase ir 98.2 6.8E-08 1.5E-12 74.3 -2.6 57 57-113 145-218 (244)
131 PRK12577 succinate dehydrogena 98.2 1.3E-07 2.7E-12 75.8 -1.6 105 9-114 103-225 (329)
132 TIGR00276 iron-sulfur cluster 98.2 7.4E-07 1.6E-11 69.9 2.7 60 58-117 158-228 (282)
133 TIGR03290 CoB_CoM_SS_C CoB--Co 98.2 4.5E-07 9.8E-12 64.3 0.9 56 59-114 2-62 (144)
134 PRK12386 fumarate reductase ir 98.2 2.1E-07 4.6E-12 71.7 -1.6 59 56-114 139-216 (251)
135 TIGR00314 cdhA CO dehydrogenas 98.1 5.4E-07 1.2E-11 78.5 0.3 58 56-114 396-453 (784)
136 PF13534 Fer4_17: 4Fe-4S diclu 98.1 4E-07 8.6E-12 55.0 -0.5 54 60-113 1-59 (61)
137 PRK00941 acetyl-CoA decarbonyl 98.1 5.7E-07 1.2E-11 78.4 0.1 58 56-114 401-458 (781)
138 cd01916 ACS_1 Acetyl-CoA synth 98.1 5E-07 1.1E-11 78.5 -1.0 57 56-114 362-419 (731)
139 COG4231 Indolepyruvate ferredo 98.0 1.7E-06 3.7E-11 73.3 1.5 59 52-120 570-630 (640)
140 COG1245 Predicted ATPase, RNas 98.0 1.7E-06 3.6E-11 71.4 0.3 56 57-120 9-72 (591)
141 PRK11168 glpC sn-glycerol-3-ph 98.0 2.1E-06 4.6E-11 70.1 0.7 57 58-114 6-70 (396)
142 TIGR01936 nqrA NADH:ubiquinone 97.9 3.1E-06 6.7E-11 70.3 0.9 57 57-113 371-429 (447)
143 PF12798 Fer4_3: 4Fe-4S bindin 97.9 3E-06 6.4E-11 36.9 0.4 14 61-74 1-14 (15)
144 PF12797 Fer4_2: 4Fe-4S bindin 97.9 2.9E-06 6.4E-11 40.5 0.4 18 56-73 5-22 (22)
145 PRK05352 Na(+)-translocating N 97.9 3.9E-06 8.4E-11 69.8 1.0 60 57-117 372-433 (448)
146 PF12798 Fer4_3: 4Fe-4S bindin 97.9 4.9E-06 1.1E-10 36.2 0.7 15 100-114 1-15 (15)
147 TIGR00273 iron-sulfur cluster- 97.8 4.4E-06 9.4E-11 69.2 0.6 59 56-114 290-359 (432)
148 PRK13409 putative ATPase RIL; 97.8 5.2E-06 1.1E-10 71.4 0.8 55 57-119 8-70 (590)
149 TIGR03379 glycerol3P_GlpC glyc 97.7 8.9E-06 1.9E-10 66.6 0.8 57 58-114 4-68 (397)
150 PRK06259 succinate dehydrogena 97.7 8E-06 1.7E-10 68.6 0.2 58 56-114 130-201 (486)
151 PRK11274 glcF glycolate oxidas 97.7 6.4E-06 1.4E-10 67.6 -1.0 57 58-114 22-89 (407)
152 COG1139 Uncharacterized conser 97.6 2.1E-05 4.5E-10 64.3 1.1 56 59-114 308-374 (459)
153 PRK15055 anaerobic sulfite red 97.6 1.4E-05 2.9E-10 64.3 0.0 20 97-117 306-325 (344)
154 PF12797 Fer4_2: 4Fe-4S bindin 97.6 2.1E-05 4.5E-10 37.6 0.6 20 93-112 3-22 (22)
155 COG1600 Uncharacterized Fe-S p 97.6 2.9E-05 6.3E-10 62.1 1.7 56 58-113 184-249 (337)
156 PF13370 Fer4_13: 4Fe-4S singl 97.6 5.8E-06 1.3E-10 49.6 -1.9 52 57-116 2-57 (58)
157 PRK13984 putative oxidoreducta 97.5 3.3E-05 7.1E-10 66.5 1.3 27 54-80 81-107 (604)
158 COG1150 HdrC Heterodisulfide r 97.5 2E-05 4.4E-10 58.0 -0.2 58 58-116 38-101 (195)
159 COG1152 CdhA CO dehydrogenase/ 97.5 2E-05 4.4E-10 66.4 -0.7 57 58-115 399-455 (772)
160 PF12800 Fer4_4: 4Fe-4S bindin 97.5 3E-05 6.5E-10 34.9 0.1 14 60-73 3-16 (17)
161 PF13187 Fer4_9: 4Fe-4S diclus 97.5 4.3E-05 9.2E-10 44.9 0.9 20 57-76 36-55 (55)
162 PF14697 Fer4_21: 4Fe-4S diclu 97.5 2E-05 4.4E-10 47.4 -0.7 23 56-78 36-59 (59)
163 TIGR02910 sulfite_red_A sulfit 97.5 4.3E-05 9.3E-10 61.2 1.0 21 96-117 299-319 (334)
164 TIGR02064 dsrA sulfite reducta 97.4 5.9E-05 1.3E-09 62.0 1.5 44 65-118 248-291 (402)
165 COG1143 NuoI Formate hydrogenl 97.4 5.1E-05 1.1E-09 55.3 0.7 33 50-82 86-118 (172)
166 PF13459 Fer4_15: 4Fe-4S singl 97.3 2.3E-05 5E-10 48.0 -1.3 61 56-117 3-65 (65)
167 PF12800 Fer4_4: 4Fe-4S bindin 97.3 0.00012 2.7E-09 32.8 1.1 16 98-113 2-17 (17)
168 COG1140 NarY Nitrate reductase 97.2 0.00011 2.4E-09 59.2 0.7 54 59-120 181-236 (513)
169 COG0247 GlpC Fe-S oxidoreducta 97.2 3.9E-05 8.3E-10 62.3 -2.1 55 58-114 8-74 (388)
170 PRK08222 hydrogenase 4 subunit 97.2 0.00013 2.9E-09 53.7 0.7 26 55-80 69-94 (181)
171 PRK09477 napH quinol dehydroge 97.1 0.00013 2.8E-09 57.0 0.5 49 63-116 177-226 (271)
172 PRK12387 formate hydrogenlyase 97.1 0.00012 2.5E-09 53.9 0.2 52 61-119 8-59 (180)
173 PF13484 Fer4_16: 4Fe-4S doubl 97.1 0.00014 3.1E-09 44.5 0.4 21 100-120 2-22 (67)
174 COG1141 Fer Ferredoxin [Energy 97.1 7.8E-05 1.7E-09 46.0 -0.8 61 56-117 5-66 (68)
175 COG1453 Predicted oxidoreducta 97.1 0.00022 4.8E-09 57.4 1.4 52 60-113 294-366 (391)
176 PRK15033 tricarballylate utili 97.1 0.00025 5.4E-09 57.7 1.4 83 58-151 32-114 (389)
177 PF12838 Fer4_7: 4Fe-4S diclus 97.0 0.00021 4.6E-09 41.6 0.5 21 55-75 32-52 (52)
178 TIGR02484 CitB CitB domain pro 97.0 0.00021 4.5E-09 57.8 0.6 54 58-116 13-66 (372)
179 KOG3256|consensus 97.0 0.00026 5.7E-09 50.8 1.0 37 44-80 135-171 (212)
180 TIGR02163 napH_ ferredoxin-typ 97.0 0.00024 5.1E-09 55.1 0.7 49 62-115 169-218 (255)
181 TIGR02936 fdxN_nitrog ferredox 96.9 0.00037 8.1E-09 45.2 0.8 23 56-78 67-89 (91)
182 PF13746 Fer4_18: 4Fe-4S diclu 96.8 0.00044 9.6E-09 42.9 0.9 18 57-74 48-65 (69)
183 TIGR02745 ccoG_rdxA_fixG cytoc 96.8 0.0005 1.1E-08 57.1 0.9 54 61-114 178-247 (434)
184 COG1146 Ferredoxin [Energy pro 96.7 0.00041 8.9E-09 42.7 0.3 26 55-80 37-62 (68)
185 COG1144 Pyruvate:ferredoxin ox 96.7 0.0004 8.8E-09 44.9 0.1 25 56-80 63-87 (91)
186 PF13746 Fer4_18: 4Fe-4S diclu 96.7 0.00075 1.6E-08 41.8 1.2 19 95-113 47-65 (69)
187 COG1145 NapF Ferredoxin [Energ 96.7 0.00055 1.2E-08 44.6 0.6 24 94-117 25-48 (99)
188 CHL00065 psaC photosystem I su 96.5 0.0012 2.7E-08 42.0 1.1 25 57-81 44-68 (81)
189 PRK09626 oorD 2-oxoglutarate-a 96.4 0.0012 2.7E-08 44.0 0.9 28 92-119 10-37 (103)
190 PRK08348 NADH-plastoquinone ox 96.4 0.0015 3.2E-08 44.8 1.2 28 92-119 36-63 (120)
191 TIGR00403 ndhI NADH-plastoquin 96.4 0.0012 2.7E-08 48.6 0.8 27 54-80 97-123 (183)
192 PRK09623 vorD 2-ketoisovalerat 96.4 0.0019 4.1E-08 43.3 1.6 51 68-118 20-71 (105)
193 PLN00071 photosystem I subunit 96.3 0.0015 3.2E-08 41.6 0.9 25 57-81 44-68 (81)
194 PRK13030 2-oxoacid ferredoxin 96.3 0.0012 2.6E-08 60.7 0.5 53 53-113 623-678 (1159)
195 CHL00014 ndhI NADH dehydrogena 96.2 0.002 4.3E-08 46.8 1.1 27 54-80 94-120 (167)
196 PF13237 Fer4_10: 4Fe-4S diclu 96.2 0.002 4.4E-08 37.2 0.9 20 93-112 2-21 (52)
197 COG1035 FrhB Coenzyme F420-red 96.2 0.0019 4.2E-08 51.7 0.9 46 57-112 3-48 (332)
198 TIGR03048 PS_I_psaC photosyste 96.1 0.0026 5.6E-08 40.3 1.3 25 56-80 42-66 (80)
199 COG0348 NapH Polyferredoxin [E 96.1 0.0017 3.6E-08 53.3 0.5 82 28-120 181-267 (386)
200 PRK09193 indolepyruvate ferred 96.1 0.0018 4E-08 59.4 0.5 53 53-113 637-692 (1165)
201 TIGR02060 aprB adenosine phosp 96.0 0.0023 5E-08 44.7 0.7 25 56-80 42-66 (132)
202 PRK06273 ferredoxin; Provision 96.0 0.0021 4.5E-08 46.6 0.4 27 93-119 44-70 (165)
203 PRK13029 2-oxoacid ferredoxin 96.0 0.0021 4.5E-08 59.1 0.5 53 53-113 651-706 (1186)
204 PRK09624 porD pyuvate ferredox 96.0 0.0023 4.9E-08 43.0 0.4 24 56-79 78-101 (105)
205 PRK09625 porD pyruvate flavodo 96.0 0.0028 6.1E-08 44.3 0.9 24 56-79 86-109 (133)
206 PRK12814 putative NADPH-depend 95.9 0.0027 5.9E-08 55.4 0.9 20 53-72 610-629 (652)
207 PRK05888 NADH dehydrogenase su 95.9 0.0027 5.8E-08 45.9 0.7 27 55-81 93-119 (164)
208 TIGR01971 NuoI NADH-quinone ox 95.9 0.003 6.4E-08 43.2 0.8 26 55-80 78-103 (122)
209 PRK02651 photosystem I subunit 95.8 0.0043 9.3E-08 39.3 1.2 25 57-81 44-68 (81)
210 PRK05113 electron transport co 95.8 0.0038 8.3E-08 46.3 0.9 25 56-80 141-165 (191)
211 TIGR02179 PorD_KorD 2-oxoacid: 95.7 0.0044 9.6E-08 38.9 1.0 28 92-119 19-46 (78)
212 PRK08493 NADH dehydrogenase su 95.7 0.0061 1.3E-07 54.4 2.0 23 58-80 203-225 (819)
213 COG3383 Uncharacterized anaero 95.7 0.0034 7.3E-08 55.0 0.4 25 55-79 188-212 (978)
214 TIGR01944 rnfB electron transp 95.6 0.0042 9E-08 45.0 0.7 24 56-79 140-163 (165)
215 TIGR02494 PFLE_PFLC glycyl-rad 95.6 0.0045 9.8E-08 48.6 0.9 25 92-116 42-66 (295)
216 PRK08764 ferredoxin; Provision 95.5 0.0053 1.2E-07 43.0 0.7 23 56-78 112-134 (135)
217 KOG0063|consensus 95.4 0.0045 9.8E-08 51.3 0.2 23 95-117 47-69 (592)
218 COG1245 Predicted ATPase, RNas 95.4 0.0041 8.9E-08 51.9 -0.1 26 55-80 46-71 (591)
219 PRK13409 putative ATPase RIL; 95.4 0.0038 8.3E-08 53.9 -0.3 26 55-80 45-70 (590)
220 TIGR02066 dsrB sulfite reducta 95.3 0.0056 1.2E-07 49.4 0.6 26 52-77 207-232 (341)
221 COG2221 DsrA Dissimilatory sul 95.3 0.0042 9E-08 49.2 -0.2 27 93-119 167-193 (317)
222 TIGR00402 napF ferredoxin-type 95.3 0.0066 1.4E-07 40.3 0.6 24 55-78 62-85 (101)
223 TIGR02912 sulfite_red_C sulfit 95.0 0.009 2E-07 47.6 0.8 27 54-80 196-222 (314)
224 PRK06991 ferredoxin; Provision 95.0 0.0098 2.1E-07 46.5 1.0 27 93-119 80-106 (270)
225 PRK15449 ferredoxin-like prote 94.9 0.0083 1.8E-07 39.5 0.4 25 52-76 54-78 (95)
226 cd07032 RNAP_I_II_AC40 AC40 su 94.9 0.009 1.9E-07 47.2 0.5 68 63-135 201-272 (291)
227 PRK14028 pyruvate ferredoxin o 94.7 0.011 2.5E-07 47.0 0.7 24 56-79 286-309 (312)
228 PRK07569 bidirectional hydroge 94.6 0.015 3.2E-07 44.5 1.0 24 58-81 189-212 (234)
229 COG1941 FrhG Coenzyme F420-red 94.5 0.011 2.3E-07 45.1 0.1 46 57-114 187-233 (247)
230 TIGR02512 Fe_only_hydrog hydro 94.4 0.013 2.8E-07 47.9 0.4 23 94-116 3-25 (374)
231 PRK09326 F420H2 dehydrogenase 94.4 0.014 3.1E-07 47.1 0.6 27 94-120 8-34 (341)
232 TIGR03287 methan_mark_16 putat 94.2 0.014 3.1E-07 47.7 0.2 25 56-80 327-351 (391)
233 KOG0063|consensus 94.2 0.014 2.9E-07 48.6 0.0 55 57-120 48-102 (592)
234 PF13183 Fer4_8: 4Fe-4S diclus 94.1 0.019 4.2E-07 33.5 0.6 16 59-74 41-56 (57)
235 TIGR02486 RDH reductive dehalo 94.0 0.02 4.4E-07 45.7 0.7 23 98-120 205-227 (314)
236 PRK08318 dihydropyrimidine deh 93.8 0.021 4.5E-07 47.3 0.5 27 55-81 373-400 (420)
237 TIGR02700 flavo_MJ0208 archaeo 93.6 0.026 5.6E-07 43.2 0.6 26 94-119 144-169 (234)
238 PRK12771 putative glutamate sy 93.5 0.027 5.8E-07 48.4 0.6 25 55-79 537-561 (564)
239 COG1149 MinD superfamily P-loo 93.3 0.028 6.2E-07 43.8 0.4 25 93-117 64-88 (284)
240 PF13534 Fer4_17: 4Fe-4S diclu 93.2 0.038 8.2E-07 32.8 0.8 18 58-75 43-60 (61)
241 TIGR00276 iron-sulfur cluster 93.0 0.032 7E-07 43.9 0.4 21 97-117 158-178 (282)
242 TIGR03294 FrhG coenzyme F420 h 93.0 0.029 6.3E-07 42.8 0.1 28 93-120 169-196 (228)
243 TIGR01973 NuoG NADH-quinone ox 92.9 0.051 1.1E-06 47.1 1.5 20 60-79 183-202 (603)
244 TIGR03224 benzo_boxA benzoyl-C 92.7 0.052 1.1E-06 44.9 1.2 28 93-120 5-32 (411)
245 COG4231 Indolepyruvate ferredo 92.6 0.041 8.8E-07 47.4 0.4 29 52-80 601-629 (640)
246 COG2768 Uncharacterized Fe-S c 92.4 0.063 1.4E-06 42.5 1.3 59 94-152 189-249 (354)
247 PF13459 Fer4_15: 4Fe-4S singl 92.4 0.047 1E-06 33.1 0.5 20 94-113 2-21 (65)
248 PRK07860 NADH dehydrogenase su 92.3 0.066 1.4E-06 48.0 1.4 20 60-79 191-210 (797)
249 COG1141 Fer Ferredoxin [Energy 91.9 0.056 1.2E-06 33.3 0.4 21 93-113 3-23 (68)
250 TIGR02176 pyruv_ox_red pyruvat 91.8 0.068 1.5E-06 49.8 0.9 25 93-117 678-702 (1165)
251 PRK13795 hypothetical protein; 91.2 0.075 1.6E-06 46.4 0.5 27 94-120 577-603 (636)
252 TIGR03336 IOR_alpha indolepyru 91.1 0.086 1.9E-06 45.7 0.8 20 56-76 576-595 (595)
253 COG2878 Predicted NADH:ubiquin 90.7 0.08 1.7E-06 38.9 0.2 30 93-122 110-139 (198)
254 COG1600 Uncharacterized Fe-S p 90.6 0.084 1.8E-06 42.5 0.3 23 98-120 185-207 (337)
255 cd07030 RNAP_D D subunit of Ar 90.3 0.1 2.2E-06 40.5 0.5 25 56-80 196-220 (259)
256 PRK00783 DNA-directed RNA poly 90.1 0.12 2.6E-06 40.2 0.7 24 97-120 168-191 (263)
257 PRK09130 NADH dehydrogenase su 90.0 0.17 3.7E-06 44.6 1.7 20 60-79 186-205 (687)
258 TIGR02910 sulfite_red_A sulfit 89.9 0.13 2.7E-06 41.5 0.8 22 56-78 298-319 (334)
259 PRK08166 NADH dehydrogenase su 89.9 0.14 3.1E-06 46.1 1.1 20 60-79 190-209 (847)
260 PRK09129 NADH dehydrogenase su 89.7 0.19 4.1E-06 44.9 1.7 20 60-79 185-204 (776)
261 PF13370 Fer4_13: 4Fe-4S singl 89.5 0.12 2.6E-06 30.7 0.2 18 96-113 2-19 (58)
262 PRK07570 succinate dehydrogena 88.8 0.19 4.1E-06 38.9 0.9 21 95-115 154-174 (250)
263 TIGR03315 Se_ygfK putative sel 88.5 0.18 3.8E-06 46.4 0.7 21 60-80 922-942 (1012)
264 TIGR03290 CoB_CoM_SS_C CoB--Co 88.4 0.2 4.3E-06 35.3 0.8 16 98-113 2-17 (144)
265 COG1035 FrhB Coenzyme F420-red 88.1 0.21 4.6E-06 40.2 0.9 24 96-120 3-26 (332)
266 PF06902 Fer4_19: Divergent 4F 87.9 0.11 2.5E-06 31.5 -0.6 56 54-119 8-63 (64)
267 PRK15055 anaerobic sulfite red 87.8 0.17 3.6E-06 41.0 0.1 18 57-74 305-322 (344)
268 TIGR00384 dhsB succinate dehyd 86.5 0.22 4.7E-06 37.7 0.1 18 58-75 193-210 (220)
269 PRK05035 electron transport co 86.0 0.28 6.1E-06 43.4 0.6 21 96-116 368-388 (695)
270 PRK08640 sdhB succinate dehydr 86.0 0.29 6.4E-06 37.8 0.6 19 96-114 150-168 (249)
271 COG1140 NarY Nitrate reductase 85.8 0.3 6.4E-06 40.0 0.5 55 45-111 200-263 (513)
272 PRK12576 succinate dehydrogena 85.5 0.34 7.4E-06 38.1 0.8 20 96-115 150-169 (279)
273 PRK12386 fumarate reductase ir 85.2 0.34 7.4E-06 37.5 0.6 20 96-115 140-159 (251)
274 PRK12575 succinate dehydrogena 84.3 1 2.2E-05 34.6 2.8 20 96-115 142-161 (235)
275 PRK12814 putative NADPH-depend 83.4 0.59 1.3E-05 41.0 1.4 19 93-111 611-629 (652)
276 TIGR01945 rnfC electron transp 83.4 0.51 1.1E-05 39.4 0.9 21 95-115 360-380 (435)
277 PRK11168 glpC sn-glycerol-3-ph 82.7 0.52 1.1E-05 38.5 0.7 22 95-116 4-25 (396)
278 PRK09853 putative selenate red 82.6 0.57 1.2E-05 43.1 1.0 20 95-114 883-906 (1019)
279 PRK12385 fumarate reductase ir 82.6 0.4 8.7E-06 36.9 0.0 17 59-75 203-219 (244)
280 PRK13552 frdB fumarate reducta 82.4 0.48 1E-05 36.4 0.4 19 96-114 147-165 (239)
281 TIGR00273 iron-sulfur cluster- 82.4 0.47 1E-05 39.6 0.4 19 95-113 290-308 (432)
282 PLN00129 succinate dehydrogena 81.9 0.54 1.2E-05 37.0 0.5 17 98-114 187-203 (276)
283 PRK05950 sdhB succinate dehydr 81.2 0.48 1E-05 36.1 0.0 17 59-75 198-214 (232)
284 PTZ00305 NADH:ubiquinone oxido 81.1 0.55 1.2E-05 37.1 0.3 20 93-112 207-226 (297)
285 TIGR02064 dsrA sulfite reducta 81.0 0.44 9.6E-06 39.4 -0.3 26 53-79 266-291 (402)
286 COG1941 FrhG Coenzyme F420-red 80.7 0.81 1.8E-05 35.1 1.1 25 95-119 186-211 (247)
287 COG1150 HdrC Heterodisulfide r 80.2 0.99 2.1E-05 33.5 1.3 20 96-115 37-56 (195)
288 PRK12577 succinate dehydrogena 80.2 0.6 1.3E-05 37.6 0.2 19 97-115 151-169 (329)
289 COG0479 FrdB Succinate dehydro 79.5 0.66 1.4E-05 35.6 0.3 20 96-115 140-159 (234)
290 COG1453 Predicted oxidoreducta 77.6 1.2 2.6E-05 36.3 1.3 21 57-78 349-369 (391)
291 TIGR03379 glycerol3P_GlpC glyc 76.5 1.1 2.3E-05 36.8 0.7 18 97-114 4-21 (397)
292 PRK11274 glcF glycolate oxidas 75.7 1.1 2.4E-05 36.8 0.5 18 58-75 72-89 (407)
293 COG4656 RnfC Predicted NADH:ub 75.2 0.94 2E-05 38.5 0.0 18 57-74 402-419 (529)
294 TIGR01318 gltD_gamma_fam gluta 75.1 0.55 1.2E-05 39.5 -1.4 18 57-74 38-57 (467)
295 cd01916 ACS_1 Acetyl-CoA synth 74.7 1.1 2.3E-05 40.0 0.2 18 58-75 402-419 (731)
296 PRK00941 acetyl-CoA decarbonyl 74.3 1.2 2.6E-05 39.9 0.4 18 58-75 441-458 (781)
297 TIGR00314 cdhA CO dehydrogenas 74.2 0.98 2.1E-05 40.4 -0.1 17 58-74 436-452 (784)
298 PRK12779 putative bifunctional 74.0 1.2 2.6E-05 40.9 0.4 20 57-76 186-219 (944)
299 PRK05352 Na(+)-translocating N 73.4 1.4 3E-05 37.1 0.6 19 96-114 372-390 (448)
300 KOG3049|consensus 73.4 0.31 6.7E-06 36.8 -2.9 54 60-113 193-264 (288)
301 PRK06259 succinate dehydrogena 73.3 1.4 3.1E-05 37.1 0.7 20 96-115 131-150 (486)
302 PRK12810 gltD glutamate syntha 73.1 0.54 1.2E-05 39.5 -1.9 21 57-77 42-64 (471)
303 TIGR01936 nqrA NADH:ubiquinone 73.1 1.4 3E-05 37.0 0.6 21 95-115 370-390 (447)
304 COG1034 NuoG NADH dehydrogenas 72.7 1 2.2E-05 39.9 -0.4 19 62-80 187-205 (693)
305 COG0247 GlpC Fe-S oxidoreducta 71.5 1.6 3.4E-05 35.4 0.5 22 95-116 6-27 (388)
306 KOG2282|consensus 71.3 1 2.2E-05 38.4 -0.6 63 58-120 174-237 (708)
307 COG1152 CdhA CO dehydrogenase/ 69.5 1.6 3.6E-05 37.7 0.2 18 57-74 436-453 (772)
308 COG2440 FixX Ferredoxin-like p 68.0 1.1 2.3E-05 29.6 -1.0 28 52-79 58-86 (99)
309 COG4624 Iron only hydrogenase 66.0 1.6 3.4E-05 35.9 -0.6 53 59-120 2-56 (411)
310 PRK15033 tricarballylate utili 63.5 2.1 4.6E-05 35.2 -0.2 16 58-73 66-81 (389)
311 COG0348 NapH Polyferredoxin [E 60.5 3.3 7.1E-05 34.1 0.4 17 60-76 246-262 (386)
312 COG1139 Uncharacterized conser 59.5 3.1 6.6E-05 34.8 0.0 15 98-112 308-322 (459)
313 PRK11749 dihydropyrimidine deh 58.7 1.6 3.5E-05 36.4 -1.8 19 57-75 38-58 (457)
314 KOG4258|consensus 52.9 5 0.00011 36.4 0.3 21 57-77 248-274 (1025)
315 PRK12831 putative oxidoreducta 52.6 2.9 6.3E-05 35.1 -1.2 19 57-75 38-58 (464)
316 PF14691 Fer4_20: Dihydroprymi 52.6 1.2 2.7E-05 30.0 -2.8 18 57-74 20-39 (111)
317 cd07031 RNAP_II_RPB3 RPB3 subu 50.2 5 0.00011 31.3 -0.1 39 96-134 198-241 (265)
318 TIGR01316 gltA glutamate synth 50.0 3.7 8E-05 34.3 -1.0 17 58-74 25-45 (449)
319 KOG2415|consensus 48.9 9.4 0.0002 32.2 1.2 49 65-116 558-606 (621)
320 PRK12778 putative bifunctional 48.8 3 6.5E-05 37.2 -1.8 18 57-74 327-346 (752)
321 PF04885 Stig1: Stigma-specifi 46.3 9.3 0.0002 26.8 0.7 41 63-114 86-126 (136)
322 TIGR02484 CitB CitB domain pro 45.5 6.4 0.00014 32.3 -0.2 18 58-75 47-64 (372)
323 COG0493 GltD NADPH-dependent g 43.8 5.8 0.00013 33.5 -0.7 17 58-74 22-39 (457)
324 PRK13030 2-oxoacid ferredoxin 42.8 6.8 0.00015 36.9 -0.5 20 54-73 657-677 (1159)
325 PRK12775 putative trifunctiona 40.5 5.1 0.00011 37.2 -1.6 19 57-75 329-349 (1006)
326 PRK09193 indolepyruvate ferred 40.1 8 0.00017 36.4 -0.4 20 54-73 671-691 (1165)
327 KOG1025|consensus 38.9 9.9 0.00021 34.8 -0.1 34 65-112 295-329 (1177)
328 PRK13029 2-oxoacid ferredoxin 38.0 9.2 0.0002 36.1 -0.4 20 54-73 685-705 (1186)
329 KOG4258|consensus 32.3 23 0.0005 32.4 1.1 41 63-119 302-343 (1025)
330 PF03860 DUF326: Domain of Unk 32.0 11 0.00024 17.9 -0.5 13 60-72 7-20 (23)
331 TIGR01317 GOGAT_sm_gam glutama 31.7 7.4 0.00016 32.9 -1.9 19 57-75 40-62 (485)
332 COG3592 Uncharacterized conser 26.5 26 0.00057 21.6 0.4 55 54-118 18-72 (74)
333 PRK10076 pyruvate formate lyas 25.2 27 0.00059 26.3 0.3 15 107-121 4-18 (213)
334 KOG1025|consensus 23.0 33 0.00072 31.6 0.5 16 58-73 236-257 (1177)
335 PF09947 DUF2180: Uncharacteri 21.9 30 0.00066 21.3 0.0 13 97-109 53-65 (68)
No 1
>KOG3256|consensus
Probab=100.00 E-value=6.7e-38 Score=220.41 Aligned_cols=157 Identities=84% Similarity=1.453 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCccCCCCCCccCccccccCCCccccccchhhcHHhchhccccchhhhh
Q psy4925 4 RGIHAAFLTEIFRGFFVATGHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEER 83 (160)
Q Consensus 4 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~ 83 (160)
.+.+.+++..+++|+.+++.|.|+.+.+++||.++++.+++|+|.+++.+++...++||.|..|+.+||.++|.++...+
T Consensus 56 ~~~~tl~~te~~rGf~itLsh~f~~p~TInYPfEKgplS~RFRGehalrRyp~geerCIACklCeavCPaqaitieae~r 135 (212)
T KOG3256|consen 56 RGQQTLFATELIRGFMITLSHTFREPVTINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEER 135 (212)
T ss_pred HHHHHHHHHHHHHHHHhhHHhhcCCCeeecCccccCCCCcccccchhhhcCCCcchhhhhHHHHHHhCCcccceeeceec
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccccccCccCCcCcccchhcccccccccCCcccccccchhhhhccHHHHhccCCcchHHHhhhhhhhhccC
Q psy4925 84 ADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTESHEELLYNKEKLLSNGDKWESEIASNIHADHLYR 160 (160)
Q Consensus 84 ~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (160)
.+++++...+.+|+..|+.||.|+++||++||.++++|+|+++++.|+.|+..+++.+|..|++++.++..++..||
T Consensus 136 ~dgsrRttrYdIDmtkCIyCG~CqEaCPvdaivegpnfEfsTetheELlYnkekLl~ngd~Wese~a~N~~~~~lyr 212 (212)
T KOG3256|consen 136 TDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTETHEELLYNKEKLLTNGDRWESEIAKNLQAELLYR 212 (212)
T ss_pred CCccccceeecccceeeeeecchhhhCCccceeccCCceeccccHHHHhhhHHHHhhccccccchhhhcccchhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998
No 2
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=99.96 E-value=7.9e-29 Score=179.34 Aligned_cols=140 Identities=46% Similarity=0.964 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCccCCCCCCccCccccccCCCccccccchhhcHHhchhccccchhhh
Q psy4925 3 DRGIHAAFLTEIFRGFFVATGHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEE 82 (160)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~ 82 (160)
+..+...++.+++.|+..+++++|+++.+..||.+....+++|+|.+.+. ..+||+|+.|+.+||++||.+....
T Consensus 4 ~~~~~~~~~~~~~~~l~~~~K~~fk~~vT~~YP~e~~~~~~rfRG~~~l~-----~~~CIgC~lCa~iCP~~aI~m~~~~ 78 (172)
T COG1143 4 KEAAKVKFLLDFLKGLWTTLKNLFKKPVTIEYPEEKIPLSPRFRGRHVLD-----RDKCIGCGLCANICPANAITMETAE 78 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCchhhCccccCCCCCCccceeecc-----ccCCcchhHHHhhCCcCceEEEEcc
Confidence 44554555559999999999999999999999999999999999988774 5569999999999999999988776
Q ss_pred hc-CCCccccccccCccCCcCcccchhcccccccccCCcccccccchhhhhccHHHHhccCCcchH
Q psy4925 83 RA-DGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTESHEELLYNKEKLLSNGDKWES 147 (160)
Q Consensus 83 ~~-~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (160)
.. ++++....+.+|.+.|+.||.|+++||++||.++..|+++.++++++.++...++..+..|++
T Consensus 79 ~~~~g~~~~~~~~In~grCIfCg~C~e~CPt~Al~~t~~~e~a~~~~~dl~~~~~~ll~~~~~~~~ 144 (172)
T COG1143 79 RKVDGRKKPKRPDINLGRCIFCGLCVEVCPTGALVLTPEFELASYKREDLVYDKERLLAPPDKKEE 144 (172)
T ss_pred cCCCCccccccceeccccccccCchhhhCchhhhcCCcceeecccchHhhhccHHHhccCcccccc
Confidence 55 577777888999999999999999999999999999999999999999999999999999987
No 3
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=99.88 E-value=1.7e-22 Score=146.58 Aligned_cols=156 Identities=64% Similarity=1.105 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCccCCCCCCccCccccccCCCccccccchhhcHHhchhccccchhhhhc
Q psy4925 5 GIHAAFLTEIFRGFFVATGHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERA 84 (160)
Q Consensus 5 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~ 84 (160)
..++.++..+++|+.+++.++|+.+.+..||........++++...+.....+.++|++|+.|+.+||.+++.+......
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~yp~~~~~~~~~~~g~~~l~~~~~~~~~Ci~C~~C~~~CP~~ai~~~~~~~~ 83 (164)
T PRK05888 4 YLKSMLLKELLKGLGVTLKYFFKKKVTIQYPEEKLPLSPRFRGRHALRRDPNGEERCIACKLCAAICPADAITIEAAERE 83 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCCCCCCCcCCEEeecCCCCCCccCCcccChHHHcCccccccccccCC
Confidence 46778888999999999999999999999998887777777766555433334559999999999999998876543222
Q ss_pred CCCccccccccCccCCcCcccchhcccccccccCCcccccccchhhhhccHHHHhccCCcchHHHhhhhhhhhccC
Q psy4925 85 DGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTESHEELLYNKEKLLSNGDKWESEIASNIHADHLYR 160 (160)
Q Consensus 85 ~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (160)
.+......+.++...|++||.|+++||++||.+...+.....++.++.++...+...+..|......-...+..|+
T Consensus 84 ~g~~~~~~~~i~~~~C~~Cg~Cv~~CP~~Ai~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (164)
T PRK05888 84 DGRRRTTRYDINFGRCIFCGFCEEACPTDAIVETPDFELATETREELIYDKEKLLANGDRVEREIAPGKAADANYR 159 (164)
T ss_pred CCcccceeeecCCCcCcccCcchhhcCcCcceecCcceeccCCHHHHccCHHHHhccccccccccccccccccccc
Confidence 2222222345788899999999999999999999999999999999999999999988888777766666666654
No 4
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=99.82 E-value=5.4e-20 Score=135.39 Aligned_cols=125 Identities=34% Similarity=0.638 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcccCCCccCCCCCCccCccccccCCCccccccchhhcHHhchhccccchhhhhcC-CCc
Q psy4925 10 FLTEIFRGFFVATGHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERAD-GSR 88 (160)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~-~~~ 88 (160)
....++.|+.++++++++.+.+.+||.+.....+++++... ++.++|++|+.|+.+||.+++......... ...
T Consensus 18 ~~~~i~~g~~vt~~~~~~~p~T~~YP~~~~~~~~~~rG~i~-----~~~~kCi~Cg~C~~aCP~~ai~~~~~~~~~~~~~ 92 (183)
T TIGR00403 18 AARYIGQGFAVTLDHMNRLPITIQYPYEKLIPSERFRGRIH-----FEFDKCIACEVCVRVCPINLPVVDWEFNKAIKKK 92 (183)
T ss_pred HHHHHHHHHHHHHHHhcCCCccccCCCCCCCCCccccceEE-----eCcccCcCcCChhhhCCCCccccccccccccccc
Confidence 34567789999999999999999999999888888887543 357899999999999999876543221111 111
Q ss_pred cccccccCccCCcCcccchhcccccccccCCcccccccchhhhhccHHHHh
Q psy4925 89 RTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTESHEELLYNKEKLL 139 (160)
Q Consensus 89 ~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~~ 139 (160)
....+.++...|+.||.|+++||++||.++..++....++..+.++...+.
T Consensus 93 ~~~~~~id~~~Ci~Cg~Cv~aCP~~AI~~~~~~e~~~~~r~~l~~~~~~l~ 143 (183)
T TIGR00403 93 QLKNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELNYDQIALG 143 (183)
T ss_pred ccceeecCcccccCcCchhhhcCCCCeecccccccccccHHHHhccHHHhc
Confidence 112345788899999999999999999999999999999999999887663
No 5
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=99.78 E-value=1.1e-19 Score=125.71 Aligned_cols=121 Identities=49% Similarity=0.972 Sum_probs=95.1
Q ss_pred HHHHHHHhhcCCCCcccCCCccCCCCCCccCccccccCCCccccccchhhcHHhchhccccchhhhhcCCCccccccccC
Q psy4925 17 GFFVATGHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDID 96 (160)
Q Consensus 17 g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~ 96 (160)
|++++++++|+++.+..||........++++...+.......++|++|+.|+.+||.+++.+.......+......+..+
T Consensus 1 ~~~~~~~~~~~~~~t~~~p~~~~~~~~~~~g~~~~~~~~~~~~~Ci~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~ 80 (122)
T TIGR01971 1 GLGLTLKYFFSKPVTVQYPEEKLYLPPRFRGRIVLTRDPNGEEKCIGCTLCAAVCPADAIRVVPAEGEDGKRRLKFYQIN 80 (122)
T ss_pred CcEeeHHHHcCCCceeECCCcCCCCCcccCCeEeeccCCCCcCcCcCcchhhhhcCHhHeeeeeeccCCCceecccceEC
Confidence 45678899999999999998887788888887666554445689999999999999988875432211122222234567
Q ss_pred ccCCcCcccchhcccccccccCCcccccccchhhhhccHHH
Q psy4925 97 MTKCIYCGFCQEACPVDAIVEGPNFEFSTESHEELLYNKEK 137 (160)
Q Consensus 97 ~~~C~~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~ 137 (160)
...|+.||.|+++||++||.+...+......+.++.+..++
T Consensus 81 ~~~C~~Cg~Cv~~CP~~al~~~~~~~~~~~~~~~~~~~~~~ 121 (122)
T TIGR01971 81 FGRCIFCGLCEEACPTDAIVLTPEFELATYTRSDLVYGKED 121 (122)
T ss_pred cccCCCCCchhhhCCCccccccceeeeccccHHHheechhh
Confidence 88999999999999999999999999999999888887654
No 6
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=99.71 E-value=7.2e-17 Score=117.32 Aligned_cols=125 Identities=35% Similarity=0.678 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcccCCCccCCCCCCccCccccccCCCccccccchhhcHHhchhccccchhhhhcC-CC
Q psy4925 9 AFLTEIFRGFFVATGHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERAD-GS 87 (160)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~-~~ 87 (160)
.+...++.|+.+++.++++.+.+..||.........+++... ++.++|++|+.|+.+||.+++.+....... ..
T Consensus 14 ~~~~~i~~~~~~~~~~~~~~~~t~~yp~~~~~~~~~~rg~i~-----~~~~~Ci~Cg~C~~aCP~~~~~~~~~~~~~~~~ 88 (167)
T CHL00014 14 RAARYIGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIH-----FEFDKCIACEVCVRVCPIDLPVVDWKLETDIRK 88 (167)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcceeCCCCCCCCCcCcCCeEE-----eccccCCCcCcHHHhCCCCCccccccccccccc
Confidence 345667889999999999999999999877666667765433 356889999999999999876543221100 11
Q ss_pred ccccccccCccCCcCcccchhcccccccccCCcccccccchhhhhccHHHH
Q psy4925 88 RRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTESHEELLYNKEKL 138 (160)
Q Consensus 88 ~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~ 138 (160)
.....+.++...|+.||.|+++||++||.+...+++....+..+.++...+
T Consensus 89 ~~~~~~~id~~~C~~Cg~C~~~CP~~AI~~~~~~~~~~~~r~~l~~~~~~~ 139 (167)
T CHL00014 89 KRLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELNYNQIAL 139 (167)
T ss_pred cccccccCCCCcCcCccchHhhcCcCceecCCccccccccHHHHhcCHHHH
Confidence 111234567788999999999999999999999999999999999988766
No 7
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=99.62 E-value=5e-16 Score=107.15 Aligned_cols=99 Identities=26% Similarity=0.655 Sum_probs=75.0
Q ss_pred HHHHHHHhhcCCCCcccCCCc-cCCCCCCccCccccccCCCccccccchhhcHHhchhccccchhhhhcCCCcccccccc
Q psy4925 17 GFFVATGHIFKEPATINYPFE-KGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDI 95 (160)
Q Consensus 17 g~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~ 95 (160)
.++..++++|+.+.+..||.. .......+++. +.++.++|++|+.|+.+||.+++....... ...+
T Consensus 4 ~~~~~~k~~~~~~~t~~~p~~~~~~~~~~~~g~-----i~i~~~~Ci~C~~C~~~CP~~ai~~~~~~~--------~~~i 70 (120)
T PRK08348 4 LLPTVLRNLFKKPATNLFPATEPVPVPEDFRGK-----ILYDVDKCVGCRMCVTVCPAGVFVYLPEIR--------KVAL 70 (120)
T ss_pred hHHHHHHHhcCCCccccCCccCCCCCCccccce-----EEECcccCcCcccHHHHCCccceEcccccc--------ceEe
Confidence 456778899999999999975 34445555543 345688999999999999999886543210 2346
Q ss_pred CccCCcCcccchhcccccccccCCcccccccch
Q psy4925 96 DMTKCIYCGFCQEACPVDAIVEGPNFEFSTESH 128 (160)
Q Consensus 96 ~~~~C~~Cg~C~~~CP~~ai~~~~~~~~~~~~~ 128 (160)
+...|+.||.|+++||++||.+...+.+....+
T Consensus 71 ~~~~C~~Cg~Cv~~CP~~Ai~~~~~~~~~~~~r 103 (120)
T PRK08348 71 WTGRCVFCGQCVDVCPTGALQMSDDFLLASYDR 103 (120)
T ss_pred cCCcCcChhhhHHhCCcCcEEeccceeeehhhh
Confidence 678899999999999999999988766554444
No 8
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=99.57 E-value=3.1e-15 Score=110.00 Aligned_cols=90 Identities=40% Similarity=0.890 Sum_probs=70.5
Q ss_pred CCCCcccCCCccCCCCCCccCccccccCCCccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccc
Q psy4925 27 KEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFC 106 (160)
Q Consensus 27 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C 106 (160)
..+.+..||.......+.++|...+ +.++|++|+.|+.+||++++.+..... .....+.++...|+.||.|
T Consensus 11 ~g~~T~~yP~~~~~~p~~~rG~~~~-----d~~~Ci~Cg~Cv~aCP~~Ai~~~~~~~----~~~~~~~~~~~~C~~Cg~C 81 (181)
T PRK08222 11 AGTATVKYPFAPLEVSPGFRGKPDL-----MPSQCIACGACTCACPANALTIQTDDQ----QNSRTWQLYLGRCIYCGRC 81 (181)
T ss_pred CCCccccCCCcccCCCCCccCceEe-----ChhhCcchhHHHHhCCccceEcccccc----cCccceeeccCcCcCCCCc
Confidence 5678999999888888888876543 688999999999999999987654321 0112345677899999999
Q ss_pred hhcccccccccCCcccccc
Q psy4925 107 QEACPVDAIVEGPNFEFST 125 (160)
Q Consensus 107 ~~~CP~~ai~~~~~~~~~~ 125 (160)
+++||++||.+...++...
T Consensus 82 ~~~CPt~AI~~~~~~~~~~ 100 (181)
T PRK08222 82 EEVCPTRAIQLTNNFELTV 100 (181)
T ss_pred ccccCcCeEEeccceeeec
Confidence 9999999999988766544
No 9
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=99.53 E-value=9.6e-15 Score=107.39 Aligned_cols=96 Identities=32% Similarity=0.755 Sum_probs=71.9
Q ss_pred CCCCcccCCCccCCCCCCccCccccccCCCccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccc
Q psy4925 27 KEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFC 106 (160)
Q Consensus 27 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C 106 (160)
.++.+..||.+....++.+++... ++.++|++|+.|+.+||++++.+...... ....+.++...|++||.|
T Consensus 11 ~g~~T~~yP~~~~~~~~~~rg~p~-----~d~~~C~~C~~Cv~~CP~~ai~~~~~~~~----~~~~~~i~~~~C~~Cg~C 81 (180)
T PRK12387 11 TGTATSSYPLEPIAVDKNFRGKPE-----YNPQQCIGCAACVNACPSNALTVETDLAT----GELAWEFNLGRCIFCGRC 81 (180)
T ss_pred cCCccccCCCCCCCCCCCCCCceE-----EChhhCcChhHHHHhcCccCeEeeccccC----CcccceeccccCcCccch
Confidence 457899999887777777776543 46889999999999999999876543211 111345788899999999
Q ss_pred hhcccccccccCCcccccccchhhh
Q psy4925 107 QEACPVDAIVEGPNFEFSTESHEEL 131 (160)
Q Consensus 107 ~~~CP~~ai~~~~~~~~~~~~~~~~ 131 (160)
+++||++||.++..++.......++
T Consensus 82 ~~vCP~~AI~~~~~~~~~~~~~~~l 106 (180)
T PRK12387 82 EEVCPTAAIKLSQEFELAVWKKEDL 106 (180)
T ss_pred hhhcCcCceEccCccchhhccHHHh
Confidence 9999999999988776554444333
No 10
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=99.42 E-value=2.9e-14 Score=86.22 Aligned_cols=56 Identities=38% Similarity=0.856 Sum_probs=32.4
Q ss_pred CccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccc-ccccc
Q psy4925 56 SGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPV-DAIVE 117 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~-~ai~~ 117 (160)
+|.++||+||+|+.+||.+++........ . .+.++.+.|++||.|+.+||+ +||++
T Consensus 3 Id~~~Ci~Cg~C~~~Cp~~~~~~i~~~~~--~----~~~v~~~~C~GCg~C~~~CPv~~AI~m 59 (59)
T PF14697_consen 3 IDEDKCIGCGKCVRACPDGAIDAIEVDEG--K----KVPVNPDKCIGCGLCVKVCPVKDAITM 59 (59)
T ss_dssp E-TTT----SCCCHHCCCCS-S-ECCTTT--T----SSECE-TT--S-SCCCCCSSSTTSEEE
T ss_pred ECcccccChhhHHhHcCccceeeEEecCC--e----eEEeccccCcCcCcccccCCCccCCCC
Confidence 46789999999999999865543221110 0 234557899999999999996 99975
No 11
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=99.42 E-value=4.1e-14 Score=84.33 Aligned_cols=55 Identities=33% Similarity=0.752 Sum_probs=34.0
Q ss_pred cccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhccccccc
Q psy4925 60 RCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 115 (160)
Q Consensus 60 ~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai 115 (160)
+||+||.|+.+||++++.+.......... ......+...|++||.|+++||++||
T Consensus 1 kCi~Cg~C~~~CP~~~~~~~~~~~~~~~~-~~~~~~~~~~C~~Cg~C~~~CP~~AI 55 (55)
T PF13187_consen 1 KCIGCGRCVEACPVGVIEFDEDGGKKVVD-KDNERRNAEKCIGCGACVKACPTGAI 55 (55)
T ss_dssp C--TTTHHHHHSTTT-EEEETTTTCEECS-ECCESTTGGG--TTCHHHHHSTTT-E
T ss_pred CCCCcchHHHHCCccCeEccCcccccccc-ccccCCCCCccccHhHHHHHcchhhC
Confidence 69999999999999998776544221110 00111245689999999999999997
No 12
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=99.36 E-value=1.6e-13 Score=80.98 Aligned_cols=52 Identities=42% Similarity=0.968 Sum_probs=33.6
Q ss_pred cccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccc
Q psy4925 60 RCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDA 114 (160)
Q Consensus 60 ~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~a 114 (160)
+|++||.|+.+||+++|.+.......+. ..+.++.+.|++||.|+.+||++|
T Consensus 1 ~C~~C~~C~~~CP~~~i~~~~~~~~~~~---~~~~~~~~~C~~C~~C~~~CP~~A 52 (52)
T PF12838_consen 1 KCIGCGACVEACPTGAIRLDEEENEEGK---PKMVIDPDKCTGCGACVEVCPTGA 52 (52)
T ss_dssp C-SS--HHHHH-TTHHCEEEETTT-SSS---TTSEETGGG----SHHHHHTTTS-
T ss_pred CCCCcCchHHhcCccccCcccccccCCc---eEEEEechhCcCcChhhhhCcCcC
Confidence 5999999999999999988765432222 345678999999999999999986
No 13
>PRK13984 putative oxidoreductase; Provisional
Probab=99.28 E-value=2.4e-12 Score=110.25 Aligned_cols=110 Identities=27% Similarity=0.606 Sum_probs=83.1
Q ss_pred HHHhhcCCCCcccCCCccCCCCCCccCccccccCCCccccccchhhcHHhchhccccchhhhhcCC--CccccccccCcc
Q psy4925 21 ATGHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERADG--SRRTTRYDIDMT 98 (160)
Q Consensus 21 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~--~~~~~~~~~~~~ 98 (160)
.+..+++.+.++.||..+..+.++|++... +|.++|++|+.|+.+||.+++.......... ........++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~Ci~C~~C~~~Cp~~ai~~~~~~~~~~~~g~~~~~~~i~~~ 86 (604)
T PRK13984 12 AWKFLFRKPVTIKVPNVKREAAERYRGFHI-----NDWEKCIGCGTCSKICPTDAITMVEVPDLPQEYGKKPQRPVIDYG 86 (604)
T ss_pred HHHHhcCCCcceECCCCCCCCCccccCccc-----cChhhCcCccchhhhCCccceEeeccccccccccccccccccCcc
Confidence 456788999999999999999999987533 4788999999999999999876543311100 001112456778
Q ss_pred CCcCcccchhcccccccccCCcccccccchhhhhccH
Q psy4925 99 KCIYCGFCQEACPVDAIVEGPNFEFSTESHEELLYNK 135 (160)
Q Consensus 99 ~C~~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~ 135 (160)
.|..|+.|+++||++||.+...+......++.+++.+
T Consensus 87 ~c~~c~~c~~~Cp~~Ai~~~~~~~~~~~~~~~~~~~~ 123 (604)
T PRK13984 87 RCSFCALCVDICTTGSLKMTREYIHISPDPEDFIFMP 123 (604)
T ss_pred cCcCcchHHhhCCcCcEEecceEEEeecChhhEEEec
Confidence 8999999999999999999888777666777666654
No 14
>PRK06273 ferredoxin; Provisional
Probab=99.25 E-value=4e-12 Score=92.04 Aligned_cols=84 Identities=32% Similarity=0.587 Sum_probs=55.3
Q ss_pred CccccccchhhcHHhchhccccchhhhhcCCC-c--cccccccCccCCcCcccchhcccccccccCCcccccccchhh-h
Q psy4925 56 SGEERCIACKLCEAICPAQAITIEAEERADGS-R--RTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTESHEE-L 131 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~-~--~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~-~ 131 (160)
++.+.|++|+.|+.+||.+++.+......... . ....+.++...|+.|+.|+++||++||......... ..+++ +
T Consensus 46 id~~~CigCg~C~~aCP~~AI~~~~~ep~~~~~~~~~~~~~~Id~~kCi~Cg~C~~aCP~~AI~~~~~~~~~-~~~~~~~ 124 (165)
T PRK06273 46 VFEELCIGCGGCANVCPTKAIEMIPVEPVKITEGYVKTKIPKIDYEKCVYCLYCHDFCPVFALFNEISPIHP-RDVGEDI 124 (165)
T ss_pred ECchhCcChhHHHHhcCccceeeecccccchhcccccccceecccccCcCCCCcchhCCHhheecccccCCh-hhhhhHh
Confidence 46789999999999999999876532111000 0 012345788899999999999999998553332222 33444 5
Q ss_pred hccHHHHhc
Q psy4925 132 LYNKEKLLS 140 (160)
Q Consensus 132 ~~~~~~~~~ 140 (160)
.++...++.
T Consensus 125 ~~~~~~ll~ 133 (165)
T PRK06273 125 EVDVSKLLE 133 (165)
T ss_pred hccHHHHhh
Confidence 665555554
No 15
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=99.25 E-value=1.4e-12 Score=85.58 Aligned_cols=64 Identities=23% Similarity=0.591 Sum_probs=45.9
Q ss_pred CCccccccchhhcHHhchhccccchhhhhcC---------CCc-cccccccCccCCcCcccchhcccccccccC
Q psy4925 55 PSGEERCIACKLCEAICPAQAITIEAEERAD---------GSR-RTTRYDIDMTKCIYCGFCQEACPVDAIVEG 118 (160)
Q Consensus 55 ~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~---------~~~-~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~ 118 (160)
.++.++|++|+.|+.+||.+++.+....... +.. ......++...|++||.|+++||++||.+.
T Consensus 17 ~i~~~~Ci~C~~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~C~~Cg~C~~~CP~~AI~~~ 90 (91)
T TIGR02936 17 SIDQEKCIGCGRCYKVCGRDVLTLKGINEEGELVASDDDDDEIERKVMVVANPGNCIGCGACARVCPKKCQTHA 90 (91)
T ss_pred EECHhHCCCcchHHHHcChhhceeeccccccccccccccccccccceeeecCCccCcChhhhhhhCCHhHEecC
Confidence 3578899999999999999988765311000 000 011124678899999999999999999863
No 16
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=99.23 E-value=1.4e-12 Score=83.69 Aligned_cols=64 Identities=39% Similarity=0.688 Sum_probs=52.0
Q ss_pred CccccccCCCccccccchhhcHHhchhccccchhhhhcCCCccccccc-cCccCCcCcccchhcccccccccCC
Q psy4925 47 GEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYD-IDMTKCIYCGFCQEACPVDAIVEGP 119 (160)
Q Consensus 47 ~~~~~~~~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~-~~~~~C~~Cg~C~~~CP~~ai~~~~ 119 (160)
+.....+..++.++|+.|+.|...||.++|...+++ ... +|.+.|.+||.|+++||++||.+-.
T Consensus 23 g~Wrv~rPv~d~~kCi~C~~C~~yCPe~~i~~~~~~---------~~~~idYdyCKGCGICa~vCP~kaI~Mv~ 87 (91)
T COG1144 23 GSWRVFRPVVDEDKCINCKLCWLYCPEPAILEEEGG---------YKVRIDYDYCKGCGICANVCPVKAIEMVR 87 (91)
T ss_pred ceeEEEeeEEcccccccCceeEEECCchheeeccCC---------ccceeEcccccCceechhhCChhheEeEe
Confidence 444555666788999999999999999988776654 222 7889999999999999999998744
No 17
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=99.22 E-value=4.7e-12 Score=80.71 Aligned_cols=56 Identities=38% Similarity=0.715 Sum_probs=45.7
Q ss_pred CCccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCC
Q psy4925 55 PSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 119 (160)
Q Consensus 55 ~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 119 (160)
.++.++|++|+.|+.+||.+++.....+ ...++...|..|+.|+.+||++||.+..
T Consensus 21 ~i~~~~C~~C~~C~~~Cp~~ai~~~~~~---------~~~i~~~~C~~C~~C~~~CP~~Ai~~~~ 76 (78)
T TIGR02179 21 VVDKEKCIKCKNCWLYCPEGAIQEDEGG---------FVGIDYDYCKGCGICANVCPVKAIEMVR 76 (78)
T ss_pred EEcCCcCcChhHHHhhcCccceEecCCC---------cEEecCccCcCccchhhhCCccccEecc
Confidence 4567899999999999999988764321 2346677899999999999999998754
No 18
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=99.19 E-value=4e-12 Score=74.84 Aligned_cols=50 Identities=44% Similarity=1.020 Sum_probs=23.4
Q ss_pred CCCccccccchhhcHHhchh-ccccchhhhhcCCCccccccccCccCCcCcccchhccc
Q psy4925 54 YPSGEERCIACKLCEAICPA-QAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACP 111 (160)
Q Consensus 54 ~~~~~~~Ci~Cg~Cv~~CP~-~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP 111 (160)
+.+|.++|++||.|+++||+ .+....... ..+.++...|++||.|+++||
T Consensus 2 i~id~~~C~~C~~C~~~CP~~~~~~~~~~~--------~~~~~~~~~C~~Cg~C~~~CP 52 (52)
T PF13237_consen 2 IVIDEDKCIGCGRCVKVCPADNAIAIDDGE--------KKVEIDPERCIGCGACVEVCP 52 (52)
T ss_dssp ----TT------TTGGG-TT-----EEE-S--------SSEEE-TTT--TTSHHHHH-T
T ss_pred CccCcccCcCCcChHHHccchhHHHhhccC--------CCeEeCcccccccChhhhhCc
Confidence 45678999999999999998 222222111 145678899999999999998
No 19
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=99.18 E-value=5.5e-12 Score=84.96 Aligned_cols=57 Identities=32% Similarity=0.704 Sum_probs=46.6
Q ss_pred CCccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCc
Q psy4925 55 PSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 55 ~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
.++.++|++|+.|+.+||.+++..+..+ ...++...|+.|+.|+.+||++||.+..+
T Consensus 47 ~~d~~~Ci~C~~C~~~CP~~ai~~~~~~---------~~~id~~~C~~Cg~Cv~~CP~~AI~~~~~ 103 (105)
T PRK09624 47 EFNRDKCVRCYLCYIYCPEPAIYLDEEG---------YPVFDYDYCKGCGICANECPTKAIEMVRE 103 (105)
T ss_pred EEChhHCcChhhHHhhCCHhhEEecCCC---------cEEECchhCCCcCchhhhcCcCcEEEecc
Confidence 4578899999999999999988765322 23467789999999999999999987654
No 20
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=99.18 E-value=1e-11 Score=83.71 Aligned_cols=58 Identities=33% Similarity=0.726 Sum_probs=47.0
Q ss_pred CCCccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCc
Q psy4925 54 YPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 54 ~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
..++.++|++|+.|+.+||.+++.....+ ...++...|..||.|+.+||++||.+...
T Consensus 46 p~i~~~~Ci~C~~C~~~CP~~ai~~~~~~---------~~~id~~~C~~Cg~Cv~~CP~~AI~~~~~ 103 (105)
T PRK09623 46 PVVDESKCVKCYICWKFCPEPAIYIKEDG---------YVAIDYDYCKGCGICANECPTKAITMVKE 103 (105)
T ss_pred EEECcccCccccchhhhCCHhheEecCCC---------cEEeCchhCcCcchhhhhcCcCcEEeccc
Confidence 44678899999999999999887654321 23577888999999999999999987653
No 21
>CHL00065 psaC photosystem I subunit VII
Probab=99.17 E-value=1.3e-11 Score=79.31 Aligned_cols=61 Identities=21% Similarity=0.545 Sum_probs=43.9
Q ss_pred CccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccC
Q psy4925 56 SGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 118 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~ 118 (160)
.+.++|++|+.|+.+||.+++.+......... ......+...|+.|+.|+.+||++||.+.
T Consensus 6 ~~~~~Ci~Cg~C~~~CP~~~i~~~~~~~~~~~--~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~ 66 (81)
T CHL00065 6 KIYDTCIGCTQCVRACPTDVLEMIPWDGCKAK--QIASAPRTEDCVGCKRCESACPTDFLSVR 66 (81)
T ss_pred CccccCCChhHHHHHCCccchhheeccccccc--cccccCCCCcCCChhhhhhhcCccccEEE
Confidence 34678999999999999998876532110000 01123456789999999999999999863
No 22
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=99.16 E-value=1.4e-11 Score=105.05 Aligned_cols=97 Identities=24% Similarity=0.420 Sum_probs=61.7
Q ss_pred ccccCCCccccccchhhcHHhch----hccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCccccc-
Q psy4925 50 ALRRYPSGEERCIACKLCEAICP----AQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFS- 124 (160)
Q Consensus 50 ~~~~~~~~~~~Ci~Cg~Cv~~CP----~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~~~~~- 124 (160)
..+.+.+|.++||.||+||++|. +.++.++..+..-.........++.++|++||+|+.+||.+|+..++....+
T Consensus 140 s~Pfy~ydp~qCIlCgRCVeaCqevqv~eaL~i~w~~~~pRV~wd~~~~i~~SSCVsCG~CvtVCP~nALmek~m~g~ag 219 (978)
T COG3383 140 SNPFYIYDPNQCILCGRCVEACQEVQVNEALTIDWRGEDPRVIWDNDVPINESSCVSCGACVTVCPVNALMEKSMLGEAG 219 (978)
T ss_pred CCCeEEecchheeehhHHHHHHHhhhceeEEEeecccCCcceecCCCCccccccccccCccceecchhhhhhhhhhcccc
Confidence 34556678999999999999998 2455555443222222222334677899999999999999999887764211
Q ss_pred --ccchhhhhccHHHHhccCCcch
Q psy4925 125 --TESHEELLYNKEKLLSNGDKWE 146 (160)
Q Consensus 125 --~~~~~~~~~~~~~~~~~~~~~~ 146 (160)
+-...+.......+-+.-++|-
T Consensus 220 ~~t~~~~~~~~~mid~~k~~eP~~ 243 (978)
T COG3383 220 YLTGINEDTLEPMIDLVKKVEPEY 243 (978)
T ss_pred ccccccchhhhhhhhhhhccCCCc
Confidence 1222333344444555555655
No 23
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=99.14 E-value=1.5e-11 Score=82.62 Aligned_cols=65 Identities=28% Similarity=0.519 Sum_probs=47.7
Q ss_pred CCCccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCc
Q psy4925 54 YPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 54 ~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
+.++.++|++|+.|+.+||++++.+........ ......++...|+.|+.|+.+||++||.+...
T Consensus 11 v~id~~~Ci~C~~Cv~aCP~~ai~~~~~~~~~~--~~~~~~i~~~~C~~C~~C~~~CP~~AI~~~~~ 75 (103)
T PRK09626 11 VWVDESRCKACDICVSVCPAGVLAMRIDPHAVL--GKMIKVVHPESCIGCRECELHCPDFAIYVADR 75 (103)
T ss_pred eEECcccccCCcchhhhcChhhhcccccccccc--CceeeEeCCccCCCcCcchhhCChhhEEEecc
Confidence 445788999999999999999886543221110 01122456778999999999999999998664
No 24
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=99.14 E-value=1.2e-11 Score=86.78 Aligned_cols=56 Identities=30% Similarity=0.655 Sum_probs=44.3
Q ss_pred cCCCccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhccccccccc
Q psy4925 53 RYPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVE 117 (160)
Q Consensus 53 ~~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~ 117 (160)
...++.++|++|+.|+.+||.+++...... ...++...|+.||.|+++||++|+.+
T Consensus 53 ~p~~d~~~Ci~C~~C~~~CP~~ai~~~~~~---------~~~i~~~~C~~Cg~Cv~vCP~~a~~l 108 (133)
T PRK09625 53 KPVHNNEICINCFNCWVYCPDAAILSRDKK---------LKGVDYSHCKGCGVCVEVCPTNPKSL 108 (133)
T ss_pred eEEEehhHCcChhhHHHhCCHhheEecCCc---------eEEeCcCcCcChhHHHHHCCcCceEE
Confidence 344678999999999999999987643221 23467788999999999999999654
No 25
>PLN00071 photosystem I subunit VII; Provisional
Probab=99.13 E-value=2.4e-11 Score=78.06 Aligned_cols=62 Identities=21% Similarity=0.527 Sum_probs=44.4
Q ss_pred CccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCC
Q psy4925 56 SGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 119 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 119 (160)
++.++|++|+.|+.+||.+++.+......... ......+...|+.|+.|+++||++||.+..
T Consensus 6 ~~~~~C~~C~~C~~~CP~~~i~~~~~~~~~~~--~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~~ 67 (81)
T PLN00071 6 KIYDTCIGCTQCVRACPTDVLEMIPWDGCKAK--QIASAPRTEDCVGCKRCESACPTDFLSVRV 67 (81)
T ss_pred EcCCcCcChhHHHHHCCccceeeecccccccc--cccCcCCCCcCcChhhHHhhcCCccceEee
Confidence 35679999999999999998876532110000 011234667899999999999999998743
No 26
>PRK06991 ferredoxin; Provisional
Probab=99.10 E-value=1.8e-11 Score=94.96 Aligned_cols=58 Identities=33% Similarity=0.657 Sum_probs=46.6
Q ss_pred CCccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCcc
Q psy4925 55 PSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNF 121 (160)
Q Consensus 55 ~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~~ 121 (160)
.++.+.|++|+.|+.+||+++|.+.... ...++...|++||.|+.+||+++|.+....
T Consensus 81 ~id~~~CigCg~Cv~aCP~~AI~~~~~~---------~~~v~~~~CigCg~Cv~vCP~~AI~~~~~~ 138 (270)
T PRK06991 81 VIDEQLCIGCTLCMQACPVDAIVGAPKQ---------MHTVLADLCTGCDLCVPPCPVDCIDMVPVT 138 (270)
T ss_pred EEccccCCCCcHHHHhCCHhheeccccc---------ceeeCHhhCCCchHHHhhCCcCCeEeecCc
Confidence 3567899999999999999998654321 234567789999999999999999886543
No 27
>PRK02651 photosystem I subunit VII; Provisional
Probab=99.10 E-value=3.9e-11 Score=77.00 Aligned_cols=61 Identities=21% Similarity=0.513 Sum_probs=44.0
Q ss_pred ccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCC
Q psy4925 57 GEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 119 (160)
Q Consensus 57 ~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 119 (160)
..++|++|+.|+.+||.+++........ .........+...|+.|+.|+.+||++||.+..
T Consensus 7 ~~~~Ci~C~~C~~~CP~~~i~~~~~~~~--~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 67 (81)
T PRK02651 7 IYDTCIGCTQCVRACPLDVLEMVPWDGC--KAGQIASSPRTEDCVGCKRCETACPTDFLSIRV 67 (81)
T ss_pred ccccCCCcchHHHHCCccceeccccccc--ccCcccccCCCCcCCChhhhhhhcCCCceEEEE
Confidence 3588999999999999988765432111 101111234667899999999999999999744
No 28
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=99.10 E-value=3.6e-11 Score=77.05 Aligned_cols=60 Identities=22% Similarity=0.550 Sum_probs=43.6
Q ss_pred CccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhccccccccc
Q psy4925 56 SGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVE 117 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~ 117 (160)
.+.++|++|+.|+.+||.+++.+...... .........+...|++||.|+++||++||.+
T Consensus 5 ~~~~~Ci~C~~Cv~~CP~~~i~~~~~~~~--~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~ 64 (80)
T TIGR03048 5 KIYDTCIGCTQCVRACPTDVLEMVPWDGC--KAGQIASAPRTEDCVGCKRCESACPTDFLSV 64 (80)
T ss_pred ecCCcCcCcchHHHHCCccceeeeccccc--ccccccCcCCCCcCcChhHHHHhcCcccCEE
Confidence 45688999999999999998876532110 0000112346678999999999999999986
No 29
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=99.09 E-value=2.4e-11 Score=84.93 Aligned_cols=61 Identities=31% Similarity=0.643 Sum_probs=48.6
Q ss_pred Cccccccchh-----hcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCcccc
Q psy4925 56 SGEERCIACK-----LCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEF 123 (160)
Q Consensus 56 ~~~~~Ci~Cg-----~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~~~~ 123 (160)
++.++|++|+ .|+.+||.+++.++... ...+.++...|++|+.|+.+||++||.+....++
T Consensus 5 v~~~~C~gC~~~~~~~Cv~~CP~~ai~~~~~~-------~~~~~id~~~C~~Cg~Cv~~CP~~AI~~~~~~~~ 70 (132)
T TIGR02060 5 VYPTKCDGCKAGEKTACVYICPNDLMHLDTEI-------MKAYNIEPDMCWECYSCVKACPQGAIDVRGYADF 70 (132)
T ss_pred EccccccCccCCchhcCHhhcCccceEecCCC-------ceeeecCchhCccHHHHHHhCCcCceEEECcccc
Confidence 4678999999 99999999998765321 0123467889999999999999999998776443
No 30
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=99.08 E-value=3.1e-11 Score=87.60 Aligned_cols=56 Identities=34% Similarity=0.710 Sum_probs=45.1
Q ss_pred CCccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCC
Q psy4925 55 PSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 119 (160)
Q Consensus 55 ~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 119 (160)
.++.++|++|+.|+++||.+++...... ...++...|+.||.|+.+||++||.+..
T Consensus 109 ~id~~~Ci~Cg~C~~aCp~~ai~~~~~~---------~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~ 164 (165)
T TIGR01944 109 LIDEDNCIGCTKCIQACPVDAIVGAAKA---------MHTVIADECTGCDLCVEPCPTDCIEMIP 164 (165)
T ss_pred EEECCcCCChhHHHHhCCccceEecCCC---------ceEeecccccChhHHHHhcCcCceEeeC
Confidence 3578899999999999999987654321 2345678899999999999999998753
No 31
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=99.08 E-value=1.5e-10 Score=87.23 Aligned_cols=58 Identities=24% Similarity=0.604 Sum_probs=42.7
Q ss_pred ccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcc--cchhccccccccc
Q psy4925 59 ERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCG--FCQEACPVDAIVE 117 (160)
Q Consensus 59 ~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg--~C~~~CP~~ai~~ 117 (160)
++|++||.|+.+||++++.+...... .....+.+..+...|++|+ .|+.+||++||..
T Consensus 53 ~~Ci~Cg~Cv~aCP~~ai~~~~~~~~-~~~g~p~~~~~~~~C~~C~d~~Cv~~CP~~Ai~~ 112 (213)
T TIGR00397 53 AACVRCGLCVEACPYDILSLASWSDP-APLGTPFFTPREVPCRMCKDIPCARACPTGALDP 112 (213)
T ss_pred ccccchhHHHHhCCcccccccccccc-cccCCccccccCCcCCCCCCchHHhHcCHhhhch
Confidence 78999999999999999976532211 1112223345567899998 6999999999974
No 32
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=99.08 E-value=2.7e-11 Score=89.79 Aligned_cols=57 Identities=30% Similarity=0.621 Sum_probs=45.7
Q ss_pred CCCccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCC
Q psy4925 54 YPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 119 (160)
Q Consensus 54 ~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 119 (160)
..++.++|++|+.|+++||.+++.....+ ....+...|+.||.|+.+||++||.+.+
T Consensus 109 ~~id~~~Ci~Cg~Cv~aCp~~ai~~~~~~---------~~~v~~~~C~~Cg~Cv~vCP~~AI~~~~ 165 (191)
T PRK05113 109 AFIDEDNCIGCTKCIQACPVDAIVGATKA---------MHTVISDLCTGCDLCVAPCPTDCIEMIP 165 (191)
T ss_pred eEEeCCcCCCCChhhhhCCHhhhecccCC---------ceeecCCcCCchHHHHHHcCcCceEEee
Confidence 34578899999999999999987654321 2245678899999999999999999855
No 33
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=99.07 E-value=3.3e-11 Score=94.80 Aligned_cols=63 Identities=33% Similarity=0.678 Sum_probs=48.2
Q ss_pred cCCCccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCc
Q psy4925 53 RYPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 53 ~~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
.+.++.++|++||.|+.+||.+++.+..... + ......+...|.+||.|+.+||++||.+...
T Consensus 42 ~~~~~~~~C~~C~~C~~~Cp~~a~~~~~~~~--~---~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~g~ 104 (295)
T TIGR02494 42 ELLFKENRCLGCGKCVEVCPAGTARLSELAD--G---RNRIIIRREKCTHCGKCTEACPSGALSIVGE 104 (295)
T ss_pred eEEEccccCCCCchhhhhCcccccccccccC--C---CcceeechhhcCchhHhhccCcHhHHhhhcc
Confidence 3456789999999999999999986321110 0 1134678889999999999999999998654
No 34
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=99.05 E-value=9.6e-11 Score=90.59 Aligned_cols=87 Identities=18% Similarity=0.395 Sum_probs=55.7
Q ss_pred hhcCCCCcccCCCccCCCCCCccCccccccCCC-ccccccchhhcHHhchhccc-cchhhhhcCCCccccccccCccCCc
Q psy4925 24 HIFKEPATINYPFEKGPLSPRFRGEHALRRYPS-GEERCIACKLCEAICPAQAI-TIEAEERADGSRRTTRYDIDMTKCI 101 (160)
Q Consensus 24 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~Ci~Cg~Cv~~CP~~~i-~~~~~~~~~~~~~~~~~~~~~~~C~ 101 (160)
.++..+.+..+-.+.+.....+. .....++.. +.++|++|+.|+++||++++ ...... ......+...|+
T Consensus 166 ~~~~~r~~C~~~CP~Ga~~~~~~-~~~~~~i~~~~~~~C~~C~~C~~vCP~~~vl~~~~~~-------~~~~~i~~~~C~ 237 (255)
T TIGR02163 166 LLFSERGWCGHLCPLGAFYGLIG-RKSLIKIAASDREKCTNCMDCFNVCPEPQVLRMPLKK-------GGSTLVLSGDCT 237 (255)
T ss_pred HHhcCCchhhCcCCCcchhhhhh-ccCceEEEeeccccCeEcCCccCcCCCCceeeccccC-------CCceEecccccc
Confidence 45566677776655554432221 111222333 37899999999999998753 221110 002345777899
Q ss_pred CcccchhcccccccccC
Q psy4925 102 YCGFCQEACPVDAIVEG 118 (160)
Q Consensus 102 ~Cg~C~~~CP~~ai~~~ 118 (160)
.||+|+++||++|+.++
T Consensus 238 ~Cg~Cv~~CP~~Ai~f~ 254 (255)
T TIGR02163 238 LCGRCIDVCHEDVLGFT 254 (255)
T ss_pred chhHHHHhCCccccccc
Confidence 99999999999999874
No 35
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=99.05 E-value=5.1e-11 Score=78.69 Aligned_cols=61 Identities=36% Similarity=0.768 Sum_probs=46.8
Q ss_pred CCccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCc
Q psy4925 55 PSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 55 ~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
..+.++|++||.|+.+||+++|........ .....++...|+.|+.|+.+||.+|+.+...
T Consensus 25 ~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~-----~~~~~~~~~~C~~C~~C~~~Cp~~a~~~~~~ 85 (99)
T COG1145 25 VIDAEKCIGCGLCVKVCPTGAIELIEEGLL-----LPEVVIDPDLCVLCGACLKVCPVDALSIAEE 85 (99)
T ss_pred EeCccccCCCCCchhhCCHHHhhcccccCc-----cceEEEccccCccccchHhhCCcCCeehhhc
Confidence 345778999999999999999876322100 1245678889999999999999999776443
No 36
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=99.04 E-value=8.8e-11 Score=91.57 Aligned_cols=90 Identities=19% Similarity=0.386 Sum_probs=56.4
Q ss_pred hcCCCCcccCCCccCCCCCCccCccccccCC-CccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCc
Q psy4925 25 IFKEPATINYPFEKGPLSPRFRGEHALRRYP-SGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYC 103 (160)
Q Consensus 25 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~C 103 (160)
++.++.+..|-.+.+.....+ +.....++. ++.++|++|+.|+++||.+++...... +.. .....+...|+.|
T Consensus 174 ~~~~r~wC~~lCP~Ga~~~~~-~~~~~~~i~~~d~~~C~~C~~C~~~CP~~~i~~~~~~-~~~----~~~~i~~~~C~~C 247 (271)
T PRK09477 174 FVVEHGWCGHLCPLGAFYGLI-GKKSLIRVKAHDRQKCTRCMDCFHVCPEPQVLRPPLK-GKQ----SPSQVTSGDCITC 247 (271)
T ss_pred HHcCCchhhccCCHHHHHHhc-ccccccccccCCcccCcccCCcCCcCCCcceeccccc-CCC----ccceeCcccCcCh
Confidence 345556666655444332221 122233344 678999999999999998764321000 000 0112566789999
Q ss_pred ccchhcccccccccCCc
Q psy4925 104 GFCQEACPVDAIVEGPN 120 (160)
Q Consensus 104 g~C~~~CP~~ai~~~~~ 120 (160)
|.|+++||++||.++..
T Consensus 248 g~Cv~~CP~~Ai~~~~r 264 (271)
T PRK09477 248 GRCIDVCSEDVFNFTIR 264 (271)
T ss_pred hHHHhhcCccceeeccc
Confidence 99999999999998765
No 37
>COG1146 Ferredoxin [Energy production and conversion]
Probab=99.04 E-value=4e-11 Score=74.53 Aligned_cols=59 Identities=32% Similarity=0.729 Sum_probs=47.3
Q ss_pred CccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCc
Q psy4925 56 SGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
++.++|++|+.|+.+||.+.+...... ....+..+.+.|+.||.|+.+||.+||.+...
T Consensus 5 Id~~~C~~c~~C~~~CP~~~~~~~~~~------~~~~~~~~~e~C~~C~~C~~~CP~~aI~~~~~ 63 (68)
T COG1146 5 IDYDKCIGCGICVEVCPAGVFDLGEDE------GGKPVVARPEECIDCGLCELACPVGAIKVDIL 63 (68)
T ss_pred ECchhcCCCChheeccChhhEEecccc------CcceeEeccccCccchhhhhhCCcceEEEecc
Confidence 467789999999999999988765431 11145678899999999999999999987554
No 38
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=99.00 E-value=1.2e-10 Score=89.40 Aligned_cols=58 Identities=31% Similarity=0.616 Sum_probs=49.5
Q ss_pred CCCccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCc
Q psy4925 54 YPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 54 ~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
..++.++|+.||.|..+|+.+|+.....+ .+.++...|.+||.|.-+||.+||.+.+.
T Consensus 64 p~i~~e~C~~CG~C~~vC~f~Ai~~~~~~---------~~~~~~~lC~GCgaC~~~CP~~AI~~~~~ 121 (284)
T COG1149 64 PEIDPEKCIRCGKCAEVCRFGAIVVLPGG---------KPVLNPDLCEGCGACSIVCPEPAIEEEPV 121 (284)
T ss_pred cccChhhccccCcHHHhCCCCeEEEcCCC---------ceecCcccccCcccceeeCCCcccccccc
Confidence 34678889999999999999999764433 56788899999999999999999998765
No 39
>PRK08764 ferredoxin; Provisional
Probab=99.00 E-value=1.3e-10 Score=81.65 Aligned_cols=52 Identities=37% Similarity=0.703 Sum_probs=41.8
Q ss_pred ccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhccccccccc
Q psy4925 57 GEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVE 117 (160)
Q Consensus 57 ~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~ 117 (160)
..++|++|++|+++||.++|...... ...++...|+.||.|+.+||++||.+
T Consensus 83 ~~~~Ci~C~~Cv~aCp~~ai~~~~~~---------~~~v~~~~C~~Cg~Cv~~CP~~Ai~~ 134 (135)
T PRK08764 83 VEADCIGCTKCIQACPVDAIVGGAKH---------MHTVIAPLCTGCELCVPACPVDCIEL 134 (135)
T ss_pred CcccCcCcchHHHhCChhhcCccCCC---------ceeecCCcCcCccchhhhcCccceEe
Confidence 35789999999999999988653221 12356678999999999999999875
No 40
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=98.99 E-value=2e-10 Score=76.80 Aligned_cols=57 Identities=25% Similarity=0.626 Sum_probs=44.4
Q ss_pred ccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCc
Q psy4925 57 GEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 57 ~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
..++|++|+.|+.+||.+++.+...+ ...+.++...|+.||.|+.+||++||.....
T Consensus 32 ~~~~C~~C~~C~~~CP~~~i~~~~~g-------~~~~~i~~~~C~~Cg~C~~~CP~~Ai~~~~~ 88 (101)
T TIGR00402 32 FSAVCTRCGECASACENNILQLGQQG-------QPTVEFDNAECDFCGKCAEACPTNAFHPRFP 88 (101)
T ss_pred CcCcCcChhHHHHHcCcccceeccCC-------ceeeEecCccCcCccChhhHCCccccCcCCC
Confidence 45789999999999999988765321 0124567788999999999999999976443
No 41
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=98.98 E-value=1.9e-10 Score=87.94 Aligned_cols=81 Identities=30% Similarity=0.546 Sum_probs=51.3
Q ss_pred ccCCCccccccchhhcHHhchh--ccccchhhhhcCCCccccc---cccCccCCcCcccchhcccccccccCCccccccc
Q psy4925 52 RRYPSGEERCIACKLCEAICPA--QAITIEAEERADGSRRTTR---YDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTE 126 (160)
Q Consensus 52 ~~~~~~~~~Ci~Cg~Cv~~CP~--~~i~~~~~~~~~~~~~~~~---~~~~~~~C~~Cg~C~~~CP~~ai~~~~~~~~~~~ 126 (160)
+.+.++.++||+|++|+.+||. ++..+.....+........ ...+...|++||.|+++||++||.....
T Consensus 139 ~~i~~d~~kCi~Cg~Cv~aC~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~C~~Cg~Cv~vCP~gAL~~~~~------ 212 (234)
T PRK07569 139 PRFGIDHNRCVLCTRCVRVCDEIEGAHTWDVAGRGAKSRVITDLNQPWGTSETCTSCGKCVQACPTGAIFRKGS------ 212 (234)
T ss_pred CcEEeehhhCcCccHHHHHHHHhcCCceeeecccCCcceEeecCCccccccccccchHHHHHhCCCCcEEecCC------
Confidence 4445678999999999999994 3333222211111100000 1123458999999999999999988754
Q ss_pred chhhhhccHHHH
Q psy4925 127 SHEELLYNKEKL 138 (160)
Q Consensus 127 ~~~~~~~~~~~~ 138 (160)
..+++.++...+
T Consensus 213 ~~~~~~~~~~~~ 224 (234)
T PRK07569 213 TVGEMEKDRDKL 224 (234)
T ss_pred cHHHhhcCcccc
Confidence 566666665544
No 42
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=98.97 E-value=7.1e-11 Score=78.42 Aligned_cols=55 Identities=42% Similarity=0.840 Sum_probs=31.8
Q ss_pred cccccchh--hcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCc
Q psy4925 58 EERCIACK--LCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 58 ~~~Ci~Cg--~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
...|.+|. .|+++||++||..+...+ .+.++...|++|+.|+.+||+++|.+...
T Consensus 6 ~~~C~hC~~ppC~~~CP~~Ai~~~~~~G--------~V~id~~~CigC~~C~~aCP~~ai~~~~~ 62 (98)
T PF13247_consen 6 PVQCRHCEDPPCVEACPTGAIYKDPEDG--------IVVIDEDKCIGCGYCVEACPYGAIRFDPD 62 (98)
T ss_dssp EEC---BSS-HHHHHCTTTSEEEETTTS---------EEE-TTTCCTHHHHHHH-TTS-EEEETT
T ss_pred CCcCcCcCCCchhhhCCccceEEEcCCC--------eEEechhhccCchhhhhhhccCcceeecc
Confidence 34577776 677777777776554211 45667777777777777777777776554
No 43
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=98.96 E-value=1e-10 Score=77.62 Aligned_cols=56 Identities=34% Similarity=0.720 Sum_probs=37.9
Q ss_pred ccCCCccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCc---------ccchhcccccccccCC
Q psy4925 52 RRYPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYC---------GFCQEACPVDAIVEGP 119 (160)
Q Consensus 52 ~~~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~C---------g~C~~~CP~~ai~~~~ 119 (160)
..+.++.++|++|+.|+.+||.+++.++... ....+|.+| .+|+++||++||.+.+
T Consensus 33 G~V~id~~~CigC~~C~~aCP~~ai~~~~~~------------~~~~KCdlC~~r~~~G~~PaCv~~Cp~~Al~~g~ 97 (98)
T PF13247_consen 33 GIVVIDEDKCIGCGYCVEACPYGAIRFDPDT------------GKARKCDLCIDRIEEGEEPACVEACPTGALTFGD 97 (98)
T ss_dssp S-EEE-TTTCCTHHHHHHH-TTS-EEEETTT------------TCEEE--TTHHHHTTT-S-HHHHH-TTS-EEEEE
T ss_pred CeEEechhhccCchhhhhhhccCcceeeccc------------ccCCcCceehhhhhcCCCChhHHhccccceEEec
Confidence 3445678999999999999999999876532 244569898 5899999999998753
No 44
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=98.95 E-value=1.9e-10 Score=71.06 Aligned_cols=54 Identities=37% Similarity=0.863 Sum_probs=36.3
Q ss_pred cccchhhcHHhchhccccchhhhhcCCC-------ccccccccCccCCc------Ccccchhccccc
Q psy4925 60 RCIACKLCEAICPAQAITIEAEERADGS-------RRTTRYDIDMTKCI------YCGFCQEACPVD 113 (160)
Q Consensus 60 ~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~-------~~~~~~~~~~~~C~------~Cg~C~~~CP~~ 113 (160)
+|+.|++|+.+||++||..+.....+.. .....+..+...|. +||.|+.+||.+
T Consensus 1 ~C~~C~~C~~~CP~~AI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~C~~C~~vCP~N 67 (67)
T PF13484_consen 1 FCITCGKCAEACPTGAISGEDEPTWEPKGCWSYNNPGVKKWRIDWEKCVSYWDCYGCGICQKVCPFN 67 (67)
T ss_pred CCcchhHHHHhCcHhhccCCCcCeeecCcchhccCccccCccchHHhhhcCCCccccchhhccCCCC
Confidence 4999999999999999988722211110 11122334444555 999999999985
No 45
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=98.95 E-value=7.1e-10 Score=85.64 Aligned_cols=61 Identities=26% Similarity=0.537 Sum_probs=43.1
Q ss_pred cccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcc--cchhcccccccccCC
Q psy4925 58 EERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCG--FCQEACPVDAIVEGP 119 (160)
Q Consensus 58 ~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg--~C~~~CP~~ai~~~~ 119 (160)
.++|++|+.|+.+||+++|.+....... ....+.+..+...|..|+ .|+.+||++||.+..
T Consensus 58 ~~~Ci~Cg~Cv~aCP~~aI~~~~~~~~~-~~g~p~~~~~~~~C~~C~~~~Cv~aCPtgAL~~~~ 120 (254)
T PRK09476 58 LSACIRCGLCVQACPYDTLKLATLASGL-SAGTPYFVARDIPCEMCEDIPCVKACPSGALDREL 120 (254)
T ss_pred hhhCcCchHHHHhCCccccCcccccccc-ccCCceeeecCCcCcCCCCCchhhccCccceEeec
Confidence 3789999999999999999765322110 011122334446799999 599999999998643
No 46
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=98.95 E-value=2e-10 Score=87.80 Aligned_cols=60 Identities=37% Similarity=0.812 Sum_probs=49.3
Q ss_pred CCccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCccccc
Q psy4925 55 PSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFS 124 (160)
Q Consensus 55 ~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~~~~~ 124 (160)
.++.++|++|+.|+.+||.+++..... ...++...|..|+.|+++||++||.+..+++..
T Consensus 144 ~id~~~C~~C~~C~~~CP~~ai~~~~~----------~~~i~~~~C~~Cg~C~~~CP~~AI~~~~~~~~~ 203 (234)
T TIGR02700 144 MIDRKRCKGCGICVDACPRSAIDMVDG----------KAFIRLLKCVGCGKCKEACPYNAIHGGLEYEMR 203 (234)
T ss_pred EEChhHCcCcchHHHhCCcccEEecCC----------ceEEchhhCCccchHHhhCCCCceecCCceEEe
Confidence 356789999999999999998876432 235677889999999999999999998776644
No 47
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=98.93 E-value=3.5e-10 Score=89.81 Aligned_cols=66 Identities=33% Similarity=0.640 Sum_probs=46.0
Q ss_pred CCCccccccchhhcHHhchhccccchhhh--hcCCCc-cccccccCccCCcCcccchhcccccccccCC
Q psy4925 54 YPSGEERCIACKLCEAICPAQAITIEAEE--RADGSR-RTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 119 (160)
Q Consensus 54 ~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~--~~~~~~-~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 119 (160)
..++.++|++|+.|+.+||.+++...... ...+.. .......+...|.+|+.|+++||++||.+..
T Consensus 242 p~id~~~Ci~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~d~~~C~gCg~C~~~CP~~AI~~~~ 310 (312)
T PRK14028 242 PVIDHSKCIMCRKCWLYCPDDAIIEAWREAEGPRGRKFRMKMIDFDYQYCKGCGVCAEVCPTGAIQMVR 310 (312)
T ss_pred eEECcccCcCcccccccCChhhhhcccccccCcccccccceeecCCcccCcCcCchhhhCCHhheEecc
Confidence 34578899999999999999887532111 001110 1112345677899999999999999998754
No 48
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=98.92 E-value=4.9e-10 Score=83.20 Aligned_cols=60 Identities=32% Similarity=0.688 Sum_probs=41.2
Q ss_pred CCCccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCc------c---cchhcccccccccCCccccc
Q psy4925 54 YPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYC------G---FCQEACPVDAIVEGPNFEFS 124 (160)
Q Consensus 54 ~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~C------g---~C~~~CP~~ai~~~~~~~~~ 124 (160)
+.+|.+.||+|+.|+.+||.+|..+.... .....|++| | +|+++||++|+.+.+.-+..
T Consensus 95 V~vd~d~CIGC~yCi~ACPyga~~~~~~~------------~~~~KCt~C~~ri~~g~~PaCV~~CP~~A~~fG~~~d~~ 162 (203)
T COG0437 95 VLVDKDLCIGCGYCIAACPYGAPQFNPDK------------GVVDKCTFCVDRVAVGKLPACVEACPTGALIFGDIDDPK 162 (203)
T ss_pred EEecCCcccCchHHHhhCCCCCceeCccc------------CcccccCcchhhHhcCCCCcccccCCcccccccchhhcc
Confidence 34567778888888888888777655421 125677777 6 78888888888877765554
Q ss_pred c
Q psy4925 125 T 125 (160)
Q Consensus 125 ~ 125 (160)
+
T Consensus 163 ~ 163 (203)
T COG0437 163 S 163 (203)
T ss_pred h
Confidence 4
No 49
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=98.91 E-value=6.9e-11 Score=102.19 Aligned_cols=121 Identities=21% Similarity=0.323 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HhhcCCCCc------ccCCCccCCCCCCccCccccccCCCccccccchhhcHHhchhc
Q psy4925 2 VDRGIHAAFLTEIFRGFFVAT-GHIFKEPAT------INYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQ 74 (160)
Q Consensus 2 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg~Cv~~CP~~ 74 (160)
+|+|++...+++..++..... ..+...++. +..|.-+......+.....+. ...+...||.||.|+.+||.+
T Consensus 307 v~iGTpv~~Ll~~~G~~~~~~~rvI~GGPmmG~~~~~~d~pv~K~t~~il~~~~~~~~-~~~~e~~CI~CG~Cv~aCP~~ 385 (695)
T PRK05035 307 ARLGTPVRHLLNQAGFKPDADQRVIMGGPMMGFTLPSLDVPVVKTTNCLLAPSATELP-PPPPEQPCIRCGACADACPAS 385 (695)
T ss_pred EeCCCCHHHHHHhcCCCCCCCceEEECCCCcCcccccCCCCeecceeEEEeccccccc-CCCchhhcCCcccHHHHCCcc
Confidence 577888888887665443221 122233321 222222222111111111111 123567899999999999998
Q ss_pred cccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCccccc
Q psy4925 75 AITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFS 124 (160)
Q Consensus 75 ~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~~~~~ 124 (160)
++............+.....++...|+.||.|..+||.+ |.+...+...
T Consensus 386 llP~~l~~~~~~~d~~~~~~~~~~~CieCG~C~~vCPs~-Iplv~~~r~a 434 (695)
T PRK05035 386 LLPQQLYWFAKAEEHDKAQEYNLFDCIECGACAYVCPSN-IPLVQYYRQA 434 (695)
T ss_pred chhhhHHHhhhccccchhhhcChhhccccCcccccCCCC-CcHHHHHHHH
Confidence 875432211111111112235667899999999999999 5554444333
No 50
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=98.89 E-value=4.8e-10 Score=91.12 Aligned_cols=65 Identities=29% Similarity=0.561 Sum_probs=45.4
Q ss_pred CccccccchhhcHHhchhccccchhhhhcCCCc----cccccccCccCCcCcccchhcccccccccCCc
Q psy4925 56 SGEERCIACKLCEAICPAQAITIEAEERADGSR----RTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~----~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
++.++|++||.|+++||.+++.........+.. ......++...|+.||.|+.+||++||.....
T Consensus 4 id~~kCi~Cg~Cv~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~id~~~C~~Cg~Cv~~CP~~Ai~~~~~ 72 (374)
T TIGR02512 4 RDMSKCIGCGRCVRACTNVQIVGALGFLNRGGKTEVAPKFGRLLDESNCIGCGQCSLVCPVGAITEKDH 72 (374)
T ss_pred echhhCCcChHhhhhCCHhhccccccccccCCccccccccccccCcccCcCccCHHHhCCCChhhhhcc
Confidence 567899999999999999987632111000100 00113467789999999999999999987643
No 51
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=98.88 E-value=4.9e-10 Score=87.04 Aligned_cols=73 Identities=29% Similarity=0.616 Sum_probs=54.4
Q ss_pred cccCCCccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCc---ccccccc
Q psy4925 51 LRRYPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN---FEFSTES 127 (160)
Q Consensus 51 ~~~~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~---~~~~~~~ 127 (160)
.+.+.+ .++|++|+.|+.+||.+++.++... ....+...|+.|+.|+.+||.+||.+... +.+..++
T Consensus 162 ~p~I~i-~~~C~~C~~C~~~CP~~vi~~~~~~---------~~v~~~~~C~~C~~Ci~~CP~~AI~i~~~~~~~if~vEs 231 (263)
T PRK00783 162 YPRIEV-SEDCDECEKCVEACPRGVLELKEGK---------LVVTDLLNCSLCKLCERACPGKAIRVSDDENKFIFTVES 231 (263)
T ss_pred cccccc-cccCCchHHHHHhCCccccEecCCe---------EEEeChhhCCCchHHHHhCCCCceEEEEcCCeEEEEecc
Confidence 344555 6889999999999999998875421 22346678999999999999999987654 4566666
Q ss_pred hhhhhc
Q psy4925 128 HEELLY 133 (160)
Q Consensus 128 ~~~~~~ 133 (160)
.|.+..
T Consensus 232 ~G~l~p 237 (263)
T PRK00783 232 DGSLPV 237 (263)
T ss_pred CCCCCH
Confidence 554433
No 52
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=98.88 E-value=3.8e-10 Score=92.19 Aligned_cols=57 Identities=30% Similarity=0.450 Sum_probs=46.4
Q ss_pred Cccccccchh--hcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCc
Q psy4925 56 SGEERCIACK--LCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 56 ~~~~~Ci~Cg--~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
+....|++|+ .|+.+||++||....... .+.++.+.|++|+.|+.+||++||.+...
T Consensus 178 y~p~~C~HC~nP~CV~ACPtGAI~k~eedG--------iV~ID~dkCiGCg~CV~ACPygAI~~n~~ 236 (492)
T TIGR01660 178 YLPRLCEHCLNPACVASCPSGAIYKREEDG--------IVLIDQDKCRGWRMCISGCPYKKIYFNWK 236 (492)
T ss_pred ECCCcCcCCCcccchhhCccCCeEEecCCC--------eEEEehhhccChHHHHHhCCCCCcEecCC
Confidence 4567999998 999999999997543211 44578899999999999999999987754
No 53
>PRK10194 ferredoxin-type protein; Provisional
Probab=98.88 E-value=5.1e-10 Score=81.05 Aligned_cols=55 Identities=20% Similarity=0.527 Sum_probs=41.5
Q ss_pred cccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCC
Q psy4925 58 EERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 119 (160)
Q Consensus 58 ~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 119 (160)
.++|++||.|+.+||.+++.....+ ...+.++...|++|+.|+.+||++||....
T Consensus 33 ~~~C~~Cg~C~~aCp~~~i~~~~~~-------~~~~~~~~~~C~~C~~C~~~CP~~ai~~~~ 87 (163)
T PRK10194 33 LTHCTRCDACINACENNILQRGAGG-------YPSVNFKNNECSFCYACAQACPESLFSPRH 87 (163)
T ss_pred hhhCcChhHHHHHcChhhcccCCCC-------ceeeeecCCCCCCchhhHhhCcchheeccc
Confidence 5679999999999999888654321 113446677899999999999999887643
No 54
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=98.87 E-value=9.4e-10 Score=96.66 Aligned_cols=67 Identities=22% Similarity=0.555 Sum_probs=44.4
Q ss_pred cccCCCccccccchhhcHHhchh----ccccchhhhhcCCCcc------------------c-c---ccccCccCCcCcc
Q psy4925 51 LRRYPSGEERCIACKLCEAICPA----QAITIEAEERADGSRR------------------T-T---RYDIDMTKCIYCG 104 (160)
Q Consensus 51 ~~~~~~~~~~Ci~Cg~Cv~~CP~----~~i~~~~~~~~~~~~~------------------~-~---~~~~~~~~C~~Cg 104 (160)
.+.+.+|.++||.|++||++|+. +++.+.. ++..... . . ....+...|+.||
T Consensus 133 ~~~I~~D~~rCI~C~RCVr~C~ev~g~~al~~~~--RG~~~~~~~~~~~~~~da~~~~~~~~~~~i~~~~~~~~~C~~CG 210 (819)
T PRK08493 133 WGKINYDPSLCIVCERCVTVCKDKIGESALKTVP--RGLDAPDKSFKESMPKDAYAVWSKKQKSLIGPVGGETLDCSFCG 210 (819)
T ss_pred CCcEEechhhcccccHHHhhCcccccchhhhhcc--CCcccccccccccccccchhhhhhcccceecccCCCcccccccC
Confidence 35567899999999999999994 2332221 1111100 0 0 0011346899999
Q ss_pred cchhcccccccccCC
Q psy4925 105 FCQEACPVDAIVEGP 119 (160)
Q Consensus 105 ~C~~~CP~~ai~~~~ 119 (160)
+|+++||+|||..+.
T Consensus 211 ~Cv~VCPvGAL~~k~ 225 (819)
T PRK08493 211 ECIAVCPVGALSSSD 225 (819)
T ss_pred cHHHhCCCCccccCc
Confidence 999999999998864
No 55
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=98.86 E-value=4.9e-10 Score=86.85 Aligned_cols=65 Identities=32% Similarity=0.653 Sum_probs=50.0
Q ss_pred ccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCc---ccccccchhhhh
Q psy4925 59 ERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN---FEFSTESHEELL 132 (160)
Q Consensus 59 ~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~---~~~~~~~~~~~~ 132 (160)
++|++|+.|+.+||.+++.++... ....+...|+.|+.|+.+||.+||.+... +.+..++.|.+.
T Consensus 169 ~~C~~C~~C~~~CP~~vi~~d~~~---------~~v~~~~~C~~C~~C~~~Cp~~AI~~~~~~~~~if~vEs~Gsl~ 236 (259)
T cd07030 169 EDCDGCGKCVEECPRGVLELEEGK---------VVVEDLEDCSLCKLCERACDAGAIRVGWDEDRFIFEVESDGSLP 236 (259)
T ss_pred hhCCChHHHHHhCCccceEccCCe---------eEEeChhhCcCchHHHHhCCCCcEEEEecCCEEEEEEeCCCCCC
Confidence 789999999999999999775431 33456779999999999999999987654 445556654443
No 56
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=98.85 E-value=6.7e-10 Score=79.91 Aligned_cols=51 Identities=37% Similarity=0.782 Sum_probs=35.6
Q ss_pred cccchh--hcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCc
Q psy4925 60 RCIACK--LCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 60 ~Ci~Cg--~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
.|.+|. -|+.+||++||..+++ ....+.++|++||.|+.+||+|||.+.+.
T Consensus 52 ~C~qCedaPC~~vCP~~AI~~~~~----------~v~V~~ekCiGC~~C~~aCPfGai~~~~~ 104 (165)
T COG1142 52 VCHHCEDAPCAEVCPVGAITRDDG----------AVQVDEEKCIGCKLCVVACPFGAITMVSY 104 (165)
T ss_pred cCCCCCCcchhhhCchhheeecCC----------ceEEchhhccCcchhhhcCCcceEEEEee
Confidence 466654 6788888887776632 45667777888888888888887776553
No 57
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=98.85 E-value=5.5e-10 Score=87.79 Aligned_cols=54 Identities=30% Similarity=0.568 Sum_probs=27.8
Q ss_pred ccccccchh--hcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccC
Q psy4925 57 GEERCIACK--LCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 118 (160)
Q Consensus 57 ~~~~Ci~Cg--~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~ 118 (160)
....|++|+ .|+.+||++||....... .+.++...|++|+.|+.+||++|+.+.
T Consensus 127 ~p~~C~hC~nP~Cv~aCPtgAI~k~eedG--------iV~ID~ekCiGCg~Cv~ACPygAi~~n 182 (321)
T TIGR03478 127 LPRICNHCTNPACLAACPTGAIYKREEDG--------IVLVDQERCKGYRYCVEACPYKKVYFN 182 (321)
T ss_pred ecccCCCCCCccchhhCCcCcEEEecCCC--------eEEECHHHCcchHHHHHhCCCCCcEec
Confidence 345566666 566666666664321110 233455555555555555555555543
No 58
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=98.84 E-value=1.2e-09 Score=86.95 Aligned_cols=57 Identities=32% Similarity=0.690 Sum_probs=45.1
Q ss_pred CCCccccccchhhcHHhchhc---cccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCc
Q psy4925 54 YPSGEERCIACKLCEAICPAQ---AITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 54 ~~~~~~~Ci~Cg~Cv~~CP~~---~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
..++.++|++|+.|+++||.. ++...+. ...++...|+.||.|+.+||++|+.....
T Consensus 164 ~~~d~~~C~~Cg~C~~~Cp~~a~~ai~~~~~----------~~~id~~~C~~Cg~Cv~~CP~~Al~~~~~ 223 (314)
T TIGR02912 164 PQYDADRCIGCGACVKVCKKKAVGALSFENY----------KVVRDHSKCIGCGECVLKCPTGAWTRSEE 223 (314)
T ss_pred CceeCccCCcchHHHHhcChhhcCceeccCC----------eEEeCCCcCcCcchhhhhCCHhhcccCcC
Confidence 346788999999999999964 4443221 45678889999999999999999987654
No 59
>PRK09898 hypothetical protein; Provisional
Probab=98.83 E-value=6.7e-10 Score=83.45 Aligned_cols=57 Identities=33% Similarity=0.725 Sum_probs=43.8
Q ss_pred Cccccccchh--hcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCc
Q psy4925 56 SGEERCIACK--LCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 56 ~~~~~Ci~Cg--~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
++...|++|+ .|+.+||++++...... + .+.++...|++|+.|+.+||++++.+...
T Consensus 118 ~~~~~C~~C~~~~C~~~CP~gAi~~~~~~---g-----~v~vd~~~CigC~~C~~aCP~~ai~~~~~ 176 (208)
T PRK09898 118 YTADTCRQCKEPQCMNVCPIGAITWQQKE---G-----CITVDHKRCIGCSACTTACPWMMATVNTE 176 (208)
T ss_pred EeCccCCCccCcchhhhCCcceEEeeccC---C-----eEEeccccCCCcCcccccCCCCCCEecCC
Confidence 4577899998 89999999998754321 1 34567788999999999999998876543
No 60
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=98.83 E-value=1.5e-10 Score=95.46 Aligned_cols=150 Identities=21% Similarity=0.299 Sum_probs=85.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhc-CCC------CcccCCCccCCCCCCccCccccccCCCccccccchhhcHHhchhc
Q psy4925 2 VDRGIHAAFLTEIFRGFFVATGHIF-KEP------ATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQ 74 (160)
Q Consensus 2 ~~~~~~~~~~~~~~~g~~~~~~~~~-~~~------~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg~Cv~~CP~~ 74 (160)
+++|++...+++..+|......+++ ..+ .+++.|.-+....-......+.... .....||.|+.|+.+||++
T Consensus 302 VrIGTP~~~lL~~~G~~~~~~~~vi~gGPmmG~~l~~ld~PVtK~t~~Ll~~~~~e~~~~-~~~~sCi~C~~C~d~CP~~ 380 (529)
T COG4656 302 VRIGTPVSQLLNEAGGIDTKPYRVIMGGPMMGFKLPTLDAPVTKTTNGLLALTKKELLEP-IKEQSCIRCSLCADACPVN 380 (529)
T ss_pred EECCCcHHHHHHHcCCCCCCCceEEeCCCcccccccccCCceecccceEEecCccccccc-hhhhccccHHHHHHhCccc
Confidence 5677788887777766555544443 222 2344443333333222222222111 1123799999999999998
Q ss_pred cccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCcccccccchhhhhccHHHHhccCCcchHHHhhhh
Q psy4925 75 AITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTESHEELLYNKEKLLSNGDKWESEIASNI 153 (160)
Q Consensus 75 ~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (160)
.+...-.....+..++.....+...|++||.|..+||.+ |.+...+.........+.....+.+....+++....++.
T Consensus 381 Llp~ql~~~a~~~~~~e~~~~~l~dCIECg~Ca~vCPs~-iplvq~~r~~Ka~i~~~~~~~~~~~~~~~rf~~~~~rl~ 458 (529)
T COG4656 381 LLPQQLYWFAKGEQHDEEEEHNLLDCIECGACAYVCPSN-IPLVQYFRQEKAEILAQRQELKKAEEAKTRFEARTARLE 458 (529)
T ss_pred cCHHHhhHHhhhhhhhHHHHHHhhhhhhhCcchhcCCCC-CCHHHHHHHHHHHHHHhchhhhccccccchhhhhhhhhh
Confidence 776655555455555555567778999999999999988 444333333333333334444444444444444444443
No 61
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=98.82 E-value=1e-09 Score=81.51 Aligned_cols=54 Identities=31% Similarity=0.749 Sum_probs=47.1
Q ss_pred cccccchh--hcHHhchhccccchh-hhhcCCCccccccccCccCCcCcccchhcccccccccCCc
Q psy4925 58 EERCIACK--LCEAICPAQAITIEA-EERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 58 ~~~Ci~Cg--~Cv~~CP~~~i~~~~-~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
...|.+|. -|+.+||++|+.... ++ .+.+|.+.|++|+.|+.+||++|..+...
T Consensus 66 ~~~C~HC~~ppCv~vCPtgA~~k~~~dG---------iV~vd~d~CIGC~yCi~ACPyga~~~~~~ 122 (203)
T COG0437 66 SISCMHCEDPPCVKVCPTGALFKREEDG---------IVLVDKDLCIGCGYCIAACPYGAPQFNPD 122 (203)
T ss_pred cccccCCCCCcccccCCCcceEEecCCC---------EEEecCCcccCchHHHhhCCCCCceeCcc
Confidence 46799998 799999999998774 43 67889999999999999999999998774
No 62
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=98.82 E-value=1.5e-09 Score=82.52 Aligned_cols=24 Identities=29% Similarity=0.611 Sum_probs=19.0
Q ss_pred Cccccccchhh--cHHhchhccccch
Q psy4925 56 SGEERCIACKL--CEAICPAQAITIE 79 (160)
Q Consensus 56 ~~~~~Ci~Cg~--Cv~~CP~~~i~~~ 79 (160)
++...|++|+. |+.+||++||...
T Consensus 89 ~~~~~C~~C~~~~Cv~~CP~gAi~~~ 114 (225)
T TIGR03149 89 FFRKSCQHCDNAPCVAVCPTGASFKD 114 (225)
T ss_pred ECchhccCCcCcChHhhCCCCcEEEe
Confidence 45678999985 9999999888654
No 63
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=98.82 E-value=6.4e-10 Score=80.02 Aligned_cols=61 Identities=36% Similarity=0.674 Sum_probs=43.8
Q ss_pred CCCccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCc------ccchhcccccccccCCccc
Q psy4925 54 YPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYC------GFCQEACPVDAIVEGPNFE 122 (160)
Q Consensus 54 ~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~C------g~C~~~CP~~ai~~~~~~~ 122 (160)
...+.++||+||.|+.+||.|+|.+... .... .-....|..| .+|+++||++|+.+.+..+
T Consensus 77 v~V~~ekCiGC~~C~~aCPfGai~~~~~-~~~~-------~~~a~KCdlC~~~e~gpaCVe~CP~~AL~lv~~~~ 143 (165)
T COG1142 77 VQVDEEKCIGCKLCVVACPFGAITMVSY-PVAA-------KAVAVKCDLCAGREVGPACVEACPTEALELVDEIV 143 (165)
T ss_pred eEEchhhccCcchhhhcCCcceEEEEee-cCcc-------hhhhhhcccccCccCCCceeeeCCHHHhhcccHHH
Confidence 3457899999999999999999987664 1111 1222345555 4699999999999866533
No 64
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=98.82 E-value=1.3e-09 Score=89.69 Aligned_cols=55 Identities=35% Similarity=0.670 Sum_probs=45.3
Q ss_pred CCCccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccC
Q psy4925 54 YPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 118 (160)
Q Consensus 54 ~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~ 118 (160)
..++.++|++|+.|+.+||.+++..+.. ...++...|..|+.|+.+||++||...
T Consensus 5 ~~id~~~Ci~C~~C~~~CP~~ai~~~~~----------~~~i~~~~C~~C~~C~~~CP~~AI~~~ 59 (411)
T TIGR03224 5 HLIDPEICIRCNTCEETCPIDAITHDDR----------NYVVKADVCNGCMACVSPCPTGAIDNW 59 (411)
T ss_pred eeeCcccCcCccchhhhCCcccEeccCC----------ceEeCcccCcCHHHHHhhcCcccceec
Confidence 3457889999999999999998865432 234677889999999999999999853
No 65
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=98.81 E-value=1.3e-09 Score=84.62 Aligned_cols=56 Identities=45% Similarity=0.829 Sum_probs=48.1
Q ss_pred CCCccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCc
Q psy4925 54 YPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 54 ~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
+...+.+|+.|+.|++.||.+|+...+ ...++...|++|++|.++||++|+...+.
T Consensus 188 p~v~e~kc~~c~~cv~~cp~~Ai~~~~-----------~~~I~~~~ci~c~~c~~ac~~gav~~~W~ 243 (354)
T COG2768 188 PVVVEEKCYDCGLCVKICPVGAITLTK-----------VVKIDYEKCIGCGQCMEACPYGAVDQNWE 243 (354)
T ss_pred ceeeeecccccchhhhhCCCcceeccc-----------ceeechhhccchhhhhhhccCcccccchh
Confidence 346678999999999999999997653 56799999999999999999999876553
No 66
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=98.81 E-value=7.7e-10 Score=84.99 Aligned_cols=21 Identities=33% Similarity=0.749 Sum_probs=13.4
Q ss_pred cccccchhh--cHHhchhccccc
Q psy4925 58 EERCIACKL--CEAICPAQAITI 78 (160)
Q Consensus 58 ~~~Ci~Cg~--Cv~~CP~~~i~~ 78 (160)
...|++|+. |+.+||++++..
T Consensus 97 ~~~C~~C~~p~Cv~~CP~~Ai~~ 119 (244)
T PRK14993 97 PRLCNHCDNPPCVPVCPVQATFQ 119 (244)
T ss_pred chhcCCcCCccCccccCCCCEEE
Confidence 456777774 777777666643
No 67
>PRK10194 ferredoxin-type protein; Provisional
Probab=98.78 E-value=2e-09 Score=77.89 Aligned_cols=24 Identities=21% Similarity=0.595 Sum_probs=16.9
Q ss_pred CccccccchhhcHHhchhccccch
Q psy4925 56 SGEERCIACKLCEAICPAQAITIE 79 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~~ 79 (160)
++.+.|+.|+.|+.+||++++...
T Consensus 63 ~~~~~C~~C~~C~~~CP~~ai~~~ 86 (163)
T PRK10194 63 FKNNECSFCYACAQACPESLFSPR 86 (163)
T ss_pred ecCCCCCCchhhHhhCcchheecc
Confidence 455678888888888887776543
No 68
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=98.78 E-value=1.2e-09 Score=86.99 Aligned_cols=23 Identities=30% Similarity=0.882 Sum_probs=15.3
Q ss_pred ccccccchh--hcHHhchhccccch
Q psy4925 57 GEERCIACK--LCEAICPAQAITIE 79 (160)
Q Consensus 57 ~~~~Ci~Cg--~Cv~~CP~~~i~~~ 79 (160)
....|++|+ .|+.+||.+++..+
T Consensus 108 ~~~~C~hC~~p~Cv~aCP~gAi~k~ 132 (328)
T PRK10882 108 IKKQCMHCVDPNCVSVCPVSALTKD 132 (328)
T ss_pred ccccCCCcCchhhHhhCCCCCEEec
Confidence 345677776 67777777776654
No 69
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=98.77 E-value=1.8e-09 Score=82.03 Aligned_cols=56 Identities=29% Similarity=0.661 Sum_probs=45.3
Q ss_pred CCCccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcc----------cchhcccccccccCCcc
Q psy4925 54 YPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCG----------FCQEACPVDAIVEGPNF 121 (160)
Q Consensus 54 ~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg----------~C~~~CP~~ai~~~~~~ 121 (160)
+.++.++|++|+.|+.+||.+++..... ..+...|++|+ +|+++||++||.+...-
T Consensus 120 v~id~~~C~~C~~C~~aCP~~A~~~~~~------------~~~~~kC~~C~~~~~~~g~~P~Cv~~Cp~~Ai~f~~~~ 185 (225)
T TIGR03149 120 VDVHKDLCVGCQYCIAACPYRVRFIHPV------------TKSADKCNFCRDTNLAEGKLPACVESCPTKALTFGDLN 185 (225)
T ss_pred EEechhhCCcchHHHHhCCCCCcEecCC------------CCccccCCCCCcchhhCCCCCcccccCccCCEEEeccc
Confidence 3467889999999999999999754321 23567899998 89999999999987653
No 70
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=98.77 E-value=1.2e-09 Score=78.95 Aligned_cols=56 Identities=30% Similarity=0.664 Sum_probs=45.8
Q ss_pred CccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCc
Q psy4925 56 SGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
++.+.||+|-+|+++||++||...... -.....+.|++|+.|+..||+++|.+...
T Consensus 112 i~e~~ciGCtkCiqaCpvdAivg~~~~---------mhtv~~dlCTGC~lCva~CPtdci~m~~~ 167 (198)
T COG2878 112 IDEANCIGCTKCIQACPVDAIVGATKA---------MHTVIADLCTGCDLCVAPCPTDCIEMQPV 167 (198)
T ss_pred ecchhccccHHHHHhCChhhhhccchh---------HHHHHHHHhcCCCcccCCCCCCceeeeec
Confidence 578899999999999999999754432 12345567999999999999999998765
No 71
>PRK07118 ferredoxin; Validated
Probab=98.77 E-value=2.3e-09 Score=83.88 Aligned_cols=53 Identities=45% Similarity=0.797 Sum_probs=46.1
Q ss_pred cccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCc
Q psy4925 58 EERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 58 ~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
...|++|+.|+++||.++|.+... ...++...|+.||.|+++||++||.+...
T Consensus 212 ~~~Ci~Cg~Cv~~CP~~AI~~~~~----------~~vId~~~C~~Cg~C~~~CP~~AI~~~~~ 264 (280)
T PRK07118 212 EVGCIGCGKCVKACPAGAITMENN----------LAVIDQEKCTSCGKCVEKCPTKAIRILNK 264 (280)
T ss_pred ccccccchHHHhhCCcCcEEEeCC----------cEEEcCCcCCCHHHHHHhCCccccEeecc
Confidence 567999999999999999987543 34678899999999999999999998655
No 72
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=98.75 E-value=3.7e-09 Score=96.24 Aligned_cols=67 Identities=30% Similarity=0.630 Sum_probs=47.2
Q ss_pred CCCccccccchhhcHHhchhccccchhhhhc--------------CC---CccccccccCccCCcCcccchhccccc--c
Q psy4925 54 YPSGEERCIACKLCEAICPAQAITIEAEERA--------------DG---SRRTTRYDIDMTKCIYCGFCQEACPVD--A 114 (160)
Q Consensus 54 ~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~--------------~~---~~~~~~~~~~~~~C~~Cg~C~~~CP~~--a 114 (160)
+.++.++|++|+.|+.+||+++|........ .+ ......+.++...|++||.|+++||.+ |
T Consensus 678 p~~~~~~Ci~Cg~C~~vCP~~ai~~~~~~~~~~~~ap~~~~~~~~~~~~~~~~~~~i~i~~~~C~gCg~Cv~~CP~~~~A 757 (1165)
T TIGR02176 678 PVWVPDNCIQCNQCAFVCPHAAIRPKLADEEELENAPAGFKSLDAKGKELEGMKFRIQISPLDCTGCGNCVDICPAKEKA 757 (1165)
T ss_pred ceeccccCCCccchHHhcChhhccccccchhhhhcCcccchhhhhhcccccccceeEEeccccCcCccchhhhcCCCCcc
Confidence 4467889999999999999999875311000 00 001112356788999999999999995 8
Q ss_pred cccCCc
Q psy4925 115 IVEGPN 120 (160)
Q Consensus 115 i~~~~~ 120 (160)
|.+...
T Consensus 758 l~m~~~ 763 (1165)
T TIGR02176 758 LVMQPL 763 (1165)
T ss_pred ccccch
Confidence 887654
No 73
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=98.74 E-value=2e-09 Score=79.15 Aligned_cols=66 Identities=29% Similarity=0.589 Sum_probs=44.7
Q ss_pred CCccccccchhhcHHhchhccccchhhhhcCCCc---cccccccCccCCcCcc------cchhcccccccccCCc
Q psy4925 55 PSGEERCIACKLCEAICPAQAITIEAEERADGSR---RTTRYDIDMTKCIYCG------FCQEACPVDAIVEGPN 120 (160)
Q Consensus 55 ~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~---~~~~~~~~~~~C~~Cg------~C~~~CP~~ai~~~~~ 120 (160)
.++.++|++|+.|+.+||.+++.+.......... .......+...|..|+ +|+++||++||.+.+.
T Consensus 83 ~i~~~~C~~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~~~kC~~C~~~~~~paCv~~CP~~Al~~~~~ 157 (181)
T PRK10330 83 HVMQERCIGCKTCVVACPYGAMEVVVRPVIRNSGAGLNVRAEKAEANKCDLCNHREDGPACMAACPTHALICVDR 157 (181)
T ss_pred EeChhhCCCcchhhhhCCccCeEeeccccccccccccccccCCceeeeCcCCCCCCCCccchhhCchhhEEEeCH
Confidence 3567889999999999999988765322110000 0001134556899998 8999999999997654
No 74
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=98.74 E-value=4.5e-09 Score=90.29 Aligned_cols=68 Identities=21% Similarity=0.355 Sum_probs=44.0
Q ss_pred ccCCCccccccchhhcHHhchh--ccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCc
Q psy4925 52 RRYPSGEERCIACKLCEAICPA--QAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 52 ~~~~~~~~~Ci~Cg~Cv~~CP~--~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
+.+..|.++||.|++||++|-. +.-.+...+++....... .......|..||+|+++||+|||..+..
T Consensus 135 p~i~~d~~rCI~C~rCvr~c~e~~g~~~l~~~~rg~~~~i~~-~~~~~~~~~~cg~cv~vCP~GAl~~k~~ 204 (603)
T TIGR01973 135 PLIKTEMTRCIHCTRCVRFANEVAGVEDLGVIGRGNNVEIGT-YEGKTLESELSGNLIDICPVGALTSKPY 204 (603)
T ss_pred CCeEecCCcCccccHHHHHHHHhhCCceEEEeccCCCCEEec-CCCCCCCCcccCChHhhCCccccccccc
Confidence 4456789999999999999973 222222222222221111 1123336889999999999999997653
No 75
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=98.72 E-value=2.6e-09 Score=84.02 Aligned_cols=55 Identities=25% Similarity=0.556 Sum_probs=46.1
Q ss_pred CCCccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCc---------ccchhcccccccccCCc
Q psy4925 54 YPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYC---------GFCQEACPVDAIVEGPN 120 (160)
Q Consensus 54 ~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~C---------g~C~~~CP~~ai~~~~~ 120 (160)
+.++.++|++|+.|+.+||.+|+.+... ......|++| .+|+++||++|+.+...
T Consensus 157 V~ID~ekCiGCg~Cv~ACPygAi~~n~~------------~~~~eKC~~C~~Rie~G~~PaCv~aCP~~A~~fGdl 220 (321)
T TIGR03478 157 VLVDQERCKGYRYCVEACPYKKVYFNPQ------------SQKSEKCIGCYPRIEKGIAPACVKQCPGRIRFVGYL 220 (321)
T ss_pred EEECHHHCcchHHHHHhCCCCCcEecCC------------CCchhhCCCchhhhccCCCCHHHhhcCcccEEEEeC
Confidence 3467889999999999999999876432 2566789999 79999999999998665
No 76
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=98.71 E-value=7.7e-10 Score=66.11 Aligned_cols=55 Identities=29% Similarity=0.684 Sum_probs=24.4
Q ss_pred cccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhccccc
Q psy4925 58 EERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVD 113 (160)
Q Consensus 58 ~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ 113 (160)
.++|++||.|+.+||+.............. .......+.+.|+.||+|..+||.+
T Consensus 2 ~~~Ci~Cg~C~~~CP~~~~~~~~~~~~~~~-~~~~~~~~~~~C~~C~~C~~~CP~~ 56 (57)
T PF13183_consen 2 LSKCIRCGACTSVCPVYRNTGRFSHPPRDR-RSAVLREEAWSCTTCGACSEVCPVG 56 (57)
T ss_dssp HHC--S-SHHHHCSHHHHHHHHHHTSTTS---HHHHHHHHGG-----HHHHH-TT-
T ss_pred HHHccCccChHHHChhhhcccccccCcchh-HHHhhcccccCCcCcCCccCcCccc
Confidence 467999999999999643221111111111 1111122237899999999999987
No 77
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=98.69 E-value=6.5e-09 Score=91.60 Aligned_cols=67 Identities=22% Similarity=0.353 Sum_probs=44.7
Q ss_pred ccCCCccccccchhhcHHhchh--ccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCC
Q psy4925 52 RRYPSGEERCIACKLCEAICPA--QAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 119 (160)
Q Consensus 52 ~~~~~~~~~Ci~Cg~Cv~~CP~--~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 119 (160)
+.+..|.++||.||+||++|-. +.-.+...+++......... .....|..||+|+++||+|||..+.
T Consensus 137 p~i~~d~~rCi~C~rCvr~c~ev~g~~~l~~~~rg~~~~i~~~~-~~~~~~~~cg~cv~~CP~GAl~~k~ 205 (776)
T PRK09129 137 PLISTEMTRCIHCTRCVRFGQEIAGVMELGMMGRGEHSEITTYV-GKTVDSELSGNMIDLCPVGALTSKP 205 (776)
T ss_pred cceeecccccccCcHHHHHHHHhcCCceeeeeccCCCCEEcCCC-CCCccCcccCCchhhCCcccccccc
Confidence 4456789999999999999973 33333333333333222211 2334688899999999999999764
No 78
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=98.68 E-value=5.8e-09 Score=81.66 Aligned_cols=49 Identities=43% Similarity=0.914 Sum_probs=43.5
Q ss_pred cCCCccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhccc
Q psy4925 53 RYPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACP 111 (160)
Q Consensus 53 ~~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP 111 (160)
.+.++++.|.+|++|+++||++|+..+.. ...++.+.|+.||.|+.+||
T Consensus 166 ~P~~~~E~c~gc~~cv~~C~~gAI~~~~~----------~l~id~~~Ci~Cg~Ci~~Cp 214 (317)
T COG2221 166 KPKVDEELCRGCGKCVKVCPTGAITWDGK----------KLKIDGSKCIGCGKCIRACP 214 (317)
T ss_pred cCccCHHHhchhHhHHHhCCCCceeeccc----------eEEEehhhccCccHHhhhCC
Confidence 35678899999999999999999987752 56789999999999999999
No 79
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=98.68 E-value=3.1e-09 Score=83.15 Aligned_cols=52 Identities=35% Similarity=0.790 Sum_probs=27.1
Q ss_pred cccccchhh--cHHhchh-ccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccC
Q psy4925 58 EERCIACKL--CEAICPA-QAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 118 (160)
Q Consensus 58 ~~~Ci~Cg~--Cv~~CP~-~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~ 118 (160)
..+|++|+. |+.+||+ +++.....+ .+.++.+.|++|+.|+.+||++|+.+.
T Consensus 90 ~~~C~hC~~p~Cv~aCP~~gA~~~~~~G---------~V~id~dkCigC~~Cv~aCP~~a~~~~ 144 (283)
T TIGR01582 90 KDGCMHCREPGCLKACPAPGAIIQYQNG---------IVDFDHSKCIGCGYCIVGCPFNIPRYD 144 (283)
T ss_pred CccCCCCCCccccCCCCcCCeEEEcCCC---------cEEEeHHHCCcchHHHhhCCCCCcEEc
Confidence 345666665 6666665 444333221 234455555555555555555555543
No 80
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.67 E-value=4.6e-09 Score=86.51 Aligned_cols=51 Identities=33% Similarity=0.879 Sum_probs=45.0
Q ss_pred CccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCC
Q psy4925 56 SGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 119 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 119 (160)
.|.+.|++|+.|++ ||.+||+++. ...+...|.+||.|..+||.+|+.+..
T Consensus 558 vde~~C~gC~~C~~-Cpf~ais~~k------------a~v~~~~C~gCG~C~~aCp~gai~~~~ 608 (622)
T COG1148 558 VDEDKCTGCGICAE-CPFGAISVDK------------AEVNPLRCKGCGICSAACPSGAIDLAG 608 (622)
T ss_pred cchhhhcCCcceee-CCCCceeccc------------cccChhhhCcccchhhhCCcccchhcc
Confidence 57889999999999 9999998762 357888999999999999999998754
No 81
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=98.66 E-value=5.2e-09 Score=75.58 Aligned_cols=55 Identities=33% Similarity=0.648 Sum_probs=33.4
Q ss_pred cccccchh--hcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCc
Q psy4925 58 EERCIACK--LCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 58 ~~~Ci~Cg--~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
...|++|+ .|+.+||+++|....... .+.++...|++|+.|+.+||++||.+...
T Consensus 61 ~~~C~~C~~~~C~~~CP~~ai~~~~~~~--------~~~i~~~~C~~C~~C~~aCP~~ai~~~~~ 117 (161)
T TIGR02951 61 SISCNHCADPACVKNCPTGAMYKREEDG--------LVLVDQDKCIGCRYCVWACPYGAPQYDPQ 117 (161)
T ss_pred CccCCCcCCcchHHhCCCCCEEeecCCC--------cEEECHHhCCCchHHHhhCCCCCcEEcCC
Confidence 45677777 777777777765431110 23455666777777777777776665443
No 82
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=98.66 E-value=4.5e-09 Score=80.79 Aligned_cols=58 Identities=29% Similarity=0.603 Sum_probs=47.5
Q ss_pred CCccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcc---------cchhcccccccccCCccccc
Q psy4925 55 PSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCG---------FCQEACPVDAIVEGPNFEFS 124 (160)
Q Consensus 55 ~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg---------~C~~~CP~~ai~~~~~~~~~ 124 (160)
.++.++|++|+.|+.+||.+++.+... ......|++|+ +|+++||++|+.+.+.-+..
T Consensus 126 ~id~~~CigC~~Cv~aCP~~Ai~~~~~------------~~~~~KC~~C~~r~~~G~~PaCv~~CP~~Al~~g~~~~~~ 192 (244)
T PRK14993 126 VVDNKRCVGCAYCVQACPYDARFINHE------------TQTADKCTFCVHRLEAGLLPACVESCVGGARIIGDIKDPH 192 (244)
T ss_pred EEcHHHCCCHHHHHHhcCCCCCEEeCC------------CCCcccCcCCcchhhCCCCcccchhcccCCEEEcccccch
Confidence 467889999999999999999986542 23567899997 89999999999987764433
No 83
>PRK09898 hypothetical protein; Provisional
Probab=98.65 E-value=8.6e-09 Score=77.46 Aligned_cols=55 Identities=33% Similarity=0.746 Sum_probs=44.8
Q ss_pred CCCccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCc
Q psy4925 54 YPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 54 ~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
+.++.++|++|+.|+.+||.+++.++.. ..+...|+.|+.|+++||++||.+.+.
T Consensus 149 v~vd~~~CigC~~C~~aCP~~ai~~~~~------------~~~~~kC~~Cg~Cv~~CP~~Ai~~~~~ 203 (208)
T PRK09898 149 ITVDHKRCIGCSACTTACPWMMATVNTE------------SKKSSKCVLCGECANACPTGALKIIEW 203 (208)
T ss_pred EEeccccCCCcCcccccCCCCCCEecCC------------CCcCCcCcChHHHHHhCCcccEEEecH
Confidence 3467889999999999999998875432 124568999999999999999987553
No 84
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=98.64 E-value=2.8e-09 Score=83.43 Aligned_cols=59 Identities=25% Similarity=0.543 Sum_probs=46.4
Q ss_pred CCCccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcc---------cchhcccccccccCCccccc
Q psy4925 54 YPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCG---------FCQEACPVDAIVEGPNFEFS 124 (160)
Q Consensus 54 ~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg---------~C~~~CP~~ai~~~~~~~~~ 124 (160)
+.++.++|++|+.|+.+||.+++.++... .....|.+|. +|+.+||++||.+....++.
T Consensus 119 V~id~dkCigC~~Cv~aCP~~a~~~~~~~------------~~~~KC~~C~dr~~~G~~PaCv~aCP~gAi~fg~~~~~~ 186 (283)
T TIGR01582 119 VDFDHSKCIGCGYCIVGCPFNIPRYDKVD------------NRPYKCTLCIDRVSVGQEPACVKTCPTNAISFGFKEDMK 186 (283)
T ss_pred EEEeHHHCCcchHHHhhCCCCCcEEcCCC------------CChhhhcccccccccCCCChHhCcccHhhEEECCHHHHH
Confidence 34678999999999999999998765421 2345788884 89999999999998764443
No 85
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=98.64 E-value=1.2e-08 Score=67.08 Aligned_cols=43 Identities=23% Similarity=0.441 Sum_probs=36.9
Q ss_pred hhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccc
Q psy4925 65 KLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 116 (160)
Q Consensus 65 g~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~ 116 (160)
..|+.+||++|+..+..+ .+.++.+.|++||.|+.+||.+++.
T Consensus 37 k~C~~aCPagA~~~~e~G---------~V~vd~e~CigCg~C~~~C~~~~~~ 79 (95)
T PRK15449 37 ELLVKACPAGLYKKQDDG---------SVRFDYAGCLECGTCRILGLGSALE 79 (95)
T ss_pred hHHHHHCCHhhcEeCCCC---------CEEEcCCCCCcchhhhhhcCCCCcc
Confidence 489999999999765433 6788999999999999999999764
No 86
>PRK07118 ferredoxin; Validated
Probab=98.63 E-value=9.3e-09 Score=80.50 Aligned_cols=52 Identities=38% Similarity=0.690 Sum_probs=44.4
Q ss_pred ccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCc
Q psy4925 59 ERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 59 ~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
..|++||.|+.+||+++|.+.+. ...++.+.|+.|+.|+.+||+++|.+...
T Consensus 139 ~~CigCg~C~~aCp~~AI~~~~g----------~~~id~~~C~~Cg~Cv~aCP~~ai~~~~~ 190 (280)
T PRK07118 139 YGCLGLGSCVAACPFDAIHIENG----------LPVVDEDKCTGCGACVKACPRNVIELIPK 190 (280)
T ss_pred CCCcChhHHHHhCCccCeEccCC----------eEEEChhhCcChhHHHHhcCccceeeecc
Confidence 36999999999999999876541 45678899999999999999999988654
No 87
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=98.63 E-value=9.5e-09 Score=91.36 Aligned_cols=67 Identities=18% Similarity=0.265 Sum_probs=42.6
Q ss_pred ccCCCccccccchhhcHHhchh--ccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCC
Q psy4925 52 RRYPSGEERCIACKLCEAICPA--QAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 119 (160)
Q Consensus 52 ~~~~~~~~~Ci~Cg~Cv~~CP~--~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 119 (160)
+.+..|.++||.|++||++|.. +.-.+...+++...... ........|.+||+|+++||+|||..+.
T Consensus 142 ~~i~~d~~rCi~C~rCVr~c~e~~g~~~l~~~~~~~~~~~~-~~~~~~~~~~~~G~cv~vCP~GAl~~k~ 210 (847)
T PRK08166 142 PFISHEMNRCIACYRCVRYYKDYAGGTDLGVYGAHDNVYFG-RPEDGTLESEFSGNLVEVCPTGVFTDKT 210 (847)
T ss_pred CceEecCCcCccccHHHHHHHhhcCcceEEEeecCceeEec-CCCCCcccChhhCChHhhCCchhccccc
Confidence 4456789999999999999983 21112111211111111 1122334688999999999999998765
No 88
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=98.63 E-value=7.5e-09 Score=78.80 Aligned_cols=55 Identities=33% Similarity=0.742 Sum_probs=45.1
Q ss_pred CCccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCC
Q psy4925 55 PSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 119 (160)
Q Consensus 55 ~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 119 (160)
.++.++|++|+.|+.+||.+++..... ...++...|+.|+.|+++||++.+....
T Consensus 170 ~id~~~C~~C~~C~~aCP~~ai~~~~~----------~~~i~~~~C~~C~~C~~~CP~~~~~~~~ 224 (228)
T TIGR03294 170 VVNQGLCMGCGTCAAACPTRAIEMEDG----------RPNVNRDRCIKCGACYVQCPRAFWPEYE 224 (228)
T ss_pred EEChhhCcChhHHHHhCCHhhEEEeCC----------cEEEChhhccCHHHHHHHcCCCCcchhh
Confidence 356789999999999999999876432 2346778899999999999999887644
No 89
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=98.61 E-value=1.5e-08 Score=89.60 Aligned_cols=66 Identities=21% Similarity=0.414 Sum_probs=42.3
Q ss_pred cCCCccccccchhhcHHhchh--ccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCC
Q psy4925 53 RYPSGEERCIACKLCEAICPA--QAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 119 (160)
Q Consensus 53 ~~~~~~~~Ci~Cg~Cv~~CP~--~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 119 (160)
.+..|.++||.|++||++|-. +.-.+...+++....... .......|..||+|+++||+|||..+.
T Consensus 144 ~i~~d~~rCI~C~rCvr~c~ev~g~~~l~~~~rg~~~~i~~-~~~~~~~~~~cG~cv~vCP~GAl~~k~ 211 (797)
T PRK07860 144 QVLLDRERCVLCARCTRFSDQIAGDPFIDLQERGALQQVGI-YEGEPFQSYFSGNTVQICPVGALTGAA 211 (797)
T ss_pred ceeecccccccCcHHHHHHHhhcCCcEEEeeecCCCCEEec-CCCCCcCccccCCchhhCCcccccccc
Confidence 355789999999999999973 221222222222221111 112334678999999999999998654
No 90
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=98.61 E-value=8.6e-09 Score=80.66 Aligned_cols=106 Identities=21% Similarity=0.284 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcccCCCccCCCCCCccCccccccCCCccccccchhhcHHhchhccccchhhhh-----
Q psy4925 9 AFLTEIFRGFFVATGHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEER----- 83 (160)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~----- 83 (160)
..+++|+.++...+..+-+...++....+.......+...++......+...||.||.|+.+||+.....+..+.
T Consensus 102 ~vikDLvvD~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~CI~CG~C~~~CP~~~~~~~flgP~~l~~ 181 (279)
T PRK12576 102 KVVKDLIVDFDEFYERMFKVKPRLYRAKEVLEGKAEHRLKPEDQKELWKFAQCIWCGLCVSACPVVAIDPEFLGPAAHAK 181 (279)
T ss_pred ceeecceechHHHHHHHHhccceeccCccCCCCccccccCHHHHHHhhcchhCcccCcccccCCCccccCCcCCHHHHHH
Confidence 345566666666655554444444321111111122332233333334678999999999999975432111100
Q ss_pred -------cCCCcc---ccccccCccCCcCcccchhcccccc
Q psy4925 84 -------ADGSRR---TTRYDIDMTKCIYCGFCQEACPVDA 114 (160)
Q Consensus 84 -------~~~~~~---~~~~~~~~~~C~~Cg~C~~~CP~~a 114 (160)
...... ........+.|+.||.|..+||.+.
T Consensus 182 a~r~~~d~rd~~~~~rl~~~~~~i~~C~~Cg~C~~~CP~~I 222 (279)
T PRK12576 182 GYRFLADPRDTITEERMKILIDSSWRCTYCYSCSNVCPRDI 222 (279)
T ss_pred HHHHhcCccccchHHHHHHHcCcCCcccCcccchhhCCCCC
Confidence 000000 0011234578999999999999874
No 91
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.60 E-value=7.3e-09 Score=85.35 Aligned_cols=84 Identities=23% Similarity=0.489 Sum_probs=64.2
Q ss_pred ccccchhhcHHhchhccccchhhhhcCCCcc--------ccccccCccCCcCcccchhcccccccccCCcccccccchhh
Q psy4925 59 ERCIACKLCEAICPAQAITIEAEERADGSRR--------TTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTESHEE 130 (160)
Q Consensus 59 ~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~--------~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~ 130 (160)
++|++||.|+.+||..+.+..+.+.+..+.. +....+|...|+.||.|..+||.+|+.++..-+.....++.
T Consensus 224 d~CtgCg~C~~vCPve~~nefn~Gl~~~kAiy~p~~qaVp~~~~Id~~~c~~c~~C~~ac~~~av~~~q~~e~ve~~vGa 303 (622)
T COG1148 224 DKCTGCGACSEVCPVEVPNEFNEGLGKRKAIYIPFPQAVPLNYNIDPKHCIECGLCEKACPNEAVDLNQEPEEVELEVGA 303 (622)
T ss_pred ccccccccccccCCcccCcccccccccceeeeccchhhcccccccChhhhccchhhhhcCCccccccCCCCcEEEEEece
Confidence 8999999999999987665444443333211 22345788899999999999999999999998888888898
Q ss_pred hhccHHHHhccC
Q psy4925 131 LLYNKEKLLSNG 142 (160)
Q Consensus 131 ~~~~~~~~~~~~ 142 (160)
|+..++.-..+.
T Consensus 304 IIvAtGy~~~Da 315 (622)
T COG1148 304 IIVATGYKPFDA 315 (622)
T ss_pred EEEEccccccCc
Confidence 888766554443
No 92
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=98.60 E-value=1.4e-08 Score=88.32 Aligned_cols=65 Identities=25% Similarity=0.390 Sum_probs=42.4
Q ss_pred CCCccccccchhhcHHhchh--ccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCC
Q psy4925 54 YPSGEERCIACKLCEAICPA--QAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 119 (160)
Q Consensus 54 ~~~~~~~Ci~Cg~Cv~~CP~--~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 119 (160)
+..+.++||+|++||++|-. |.-.+...+++....... +......|..||+|+++||+|||+.+.
T Consensus 140 i~~~~~rCI~C~rCvr~c~ev~g~~~l~~~~rg~~~~i~~-~~~~~~~~~~~G~cv~~CPvgAl~~k~ 206 (687)
T PRK09130 140 VKTVMTRCIHCTRCVRFATEVAGVPELGAIGRGEDMEITT-YLEQALTSELSGNVIDLCPVGALTSKP 206 (687)
T ss_pred EEEecccCCcccHHHHHHHhhcCCceEEeeecCCCCEEcc-CCCCCccccccccHHhhCCCccccccc
Confidence 45678999999999999973 222222222222222211 122333578999999999999999765
No 93
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=98.60 E-value=1.5e-08 Score=76.39 Aligned_cols=62 Identities=35% Similarity=0.816 Sum_probs=44.7
Q ss_pred Ccccccc-----chhhcHHhchh--ccccchhhhhcCCCccccccccCccCCcCcccchhccccc--ccccCC
Q psy4925 56 SGEERCI-----ACKLCEAICPA--QAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVD--AIVEGP 119 (160)
Q Consensus 56 ~~~~~Ci-----~Cg~Cv~~CP~--~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~--ai~~~~ 119 (160)
++.++|+ .|+.|+++||+ +||.+.......+ ......++.+.|++||.|+.+||++ ||.+..
T Consensus 128 id~~~C~~~~g~~C~~C~~~CP~~~~AI~~~~~~~~~~--~~~~p~Vd~~~C~gCG~C~~~CP~~~~AI~v~~ 198 (213)
T TIGR00397 128 VGHETCLNYKGLNCSICVRVCPIRGEAISLKPIENERG--RLQIPTVDSAKCTGCGTCEKHCVLSEAAIRVLP 198 (213)
T ss_pred ECCCCcccCCCCCcccchhhCCCCcceEEEecccccCC--cccceEEecccCCCcchhhHhCCCCCCeEEEee
Confidence 4677898 99999999998 6887654221111 1113456888999999999999987 776644
No 94
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=98.59 E-value=1.4e-08 Score=78.48 Aligned_cols=62 Identities=32% Similarity=0.727 Sum_probs=44.6
Q ss_pred Ccccccc-----chhhcHHhchh--ccccchhhhhcC-CCccccccccCccCCcCcccchhccccc--cccc
Q psy4925 56 SGEERCI-----ACKLCEAICPA--QAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQEACPVD--AIVE 117 (160)
Q Consensus 56 ~~~~~Ci-----~Cg~Cv~~CP~--~~i~~~~~~~~~-~~~~~~~~~~~~~~C~~Cg~C~~~CP~~--ai~~ 117 (160)
++.++|+ .|+.|+.+||. +||.++...... +........++.+.|++||.|+.+||++ ||.+
T Consensus 134 id~~~Ci~~~~~~C~~C~~~CP~~~~AI~~~~~~~~r~g~~~~~~p~Id~d~C~gCG~C~~aCP~~~~AI~v 205 (254)
T PRK09476 134 VDQENCLNFQGLRCDVCYRVCPLIDKAITLELERNERTGKHAFFLPTVHSDACTGCGKCEKACVLEKAAIKV 205 (254)
T ss_pred cchhhccccCCCchHHHhhhCCCccCeEEEEcccccccccccccceEEeHHHCcCcChhhHhcCCCcceEEE
Confidence 6778999 89999999996 788765432111 1111112356778999999999999998 7765
No 95
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=98.59 E-value=1e-08 Score=84.60 Aligned_cols=58 Identities=26% Similarity=0.693 Sum_probs=43.9
Q ss_pred CCccccccchhhcHHhchhc---cccchhhhhcCCCccccccccCccCCcCcccchhcccc-cccccCC
Q psy4925 55 PSGEERCIACKLCEAICPAQ---AITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPV-DAIVEGP 119 (160)
Q Consensus 55 ~~~~~~Ci~Cg~Cv~~CP~~---~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~-~ai~~~~ 119 (160)
.++.++|++|+.|+.+||.+ ++.+...+. ....++...|+.|+.|+.+||. +||.+..
T Consensus 338 ~~~~~~C~~C~~C~~~Cp~~~~~ai~~~~~~~-------~~~~i~~~~C~~Cg~C~~~CP~~~Ai~~~~ 399 (420)
T PRK08318 338 RIDQDKCIGCGRCYIACEDTSHQAIEWDEDGT-------RTPEVIEEECVGCNLCAHVCPVEGCITMGE 399 (420)
T ss_pred EECHHHCCCCCcccccCCCcchhheeeccCCC-------ceEEechhhCcccchHHhhCCCCCCEEEec
Confidence 35778999999999999964 454422110 1235677889999999999999 9998755
No 96
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=98.58 E-value=1.7e-08 Score=72.85 Aligned_cols=56 Identities=32% Similarity=0.654 Sum_probs=45.7
Q ss_pred cCCCccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcc---------cchhcccccccccCCc
Q psy4925 53 RYPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCG---------FCQEACPVDAIVEGPN 120 (160)
Q Consensus 53 ~~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg---------~C~~~CP~~ai~~~~~ 120 (160)
.+.++.++|++|+.|+.+||.+++.+... ......|++|+ +|+.+||++||.+.+.
T Consensus 89 ~~~i~~~~C~~C~~C~~aCP~~ai~~~~~------------~~~~~kC~~C~~r~~~g~~p~Cv~~Cp~~Ai~~~~~ 153 (161)
T TIGR02951 89 LVLVDQDKCIGCRYCVWACPYGAPQYDPQ------------QGVMGKCDGCYDRVEKGLRPACVDACPMRALDFGPI 153 (161)
T ss_pred cEEECHHhCCCchHHHhhCCCCCcEEcCC------------CCccccCCCCHHHHHCCCCCcchhhccccceEEecH
Confidence 44578899999999999999999876532 12356899997 8999999999998654
No 97
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=98.58 E-value=2.2e-08 Score=77.90 Aligned_cols=67 Identities=21% Similarity=0.253 Sum_probs=41.0
Q ss_pred ccCCCccccccchhhcHHhchh--ccccchhhhhcCCCccccccccCccCCc--CcccchhcccccccccCCc
Q psy4925 52 RRYPSGEERCIACKLCEAICPA--QAITIEAEERADGSRRTTRYDIDMTKCI--YCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 52 ~~~~~~~~~Ci~Cg~Cv~~CP~--~~i~~~~~~~~~~~~~~~~~~~~~~~C~--~Cg~C~~~CP~~ai~~~~~ 120 (160)
+.+.+|.++||.|++||++|-. +.-.+...+++....... ..+...|. +||+|+++||+|||..++.
T Consensus 205 p~i~~D~nKCIlCgRCVRaC~EVqg~~aL~~~~RG~~t~I~t--~~d~~~~~~~~~g~cvdvCPvGAL~~~d~ 275 (297)
T PTZ00305 205 PQTRVVLNRCIHCTRCVRFLNEHAQDFNLGMIGRGGLSEIST--FLDELEVKTDNNMPVSQLCPVGKLYLGDA 275 (297)
T ss_pred CceeecCCcCcCccHHHHHHHHhhCCcEEEEeecCCCCEEee--cCCCcccccCCCCceeeECCCcccccCCc
Confidence 3345678999999999999984 222222223332222211 12222243 4677999999999988765
No 98
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=98.58 E-value=7.9e-09 Score=83.58 Aligned_cols=55 Identities=31% Similarity=0.690 Sum_probs=44.9
Q ss_pred CCccccccchhhcH--HhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCccc
Q psy4925 55 PSGEERCIACKLCE--AICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 122 (160)
Q Consensus 55 ~~~~~~Ci~Cg~Cv--~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~~~ 122 (160)
.++.++|++|+.|. .+||++++..+ ..++...|+.|+.|+++||++|+.+.....
T Consensus 298 ~id~dkCi~Cg~C~~~~aCPt~AI~~~-------------~~Id~~~Ci~CGaCV~aCP~~AI~~~~~~i 354 (391)
T TIGR03287 298 KYNPERCENCDPCLVEEACPVPAIKKD-------------GTLNTEDCFGCGYCAEICPGGAFEVNLGSV 354 (391)
T ss_pred EEchhhCcCCCCCcCCcCCCHhhEecc-------------ceeChHhCcChHHHHhhCCccceEEeCCeE
Confidence 35678999999995 89999988632 136777899999999999999999876544
No 99
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=98.58 E-value=1.9e-08 Score=80.22 Aligned_cols=22 Identities=32% Similarity=0.782 Sum_probs=10.7
Q ss_pred cCccCCcCcccchhcccccccc
Q psy4925 95 IDMTKCIYCGFCQEACPVDAIV 116 (160)
Q Consensus 95 ~~~~~C~~Cg~C~~~CP~~ai~ 116 (160)
++...|++|+.|+.+||+++|.
T Consensus 140 id~dkCigCg~Cv~aCP~gai~ 161 (328)
T PRK10882 140 YDKDVCTGCRYCMVACPFNVPK 161 (328)
T ss_pred CCHHHcCcccHHHHhCCcccee
Confidence 3444455555555555555444
No 100
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=98.57 E-value=1.8e-08 Score=74.13 Aligned_cols=52 Identities=29% Similarity=0.631 Sum_probs=43.4
Q ss_pred cccccchh--hcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCC
Q psy4925 58 EERCIACK--LCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 119 (160)
Q Consensus 58 ~~~Ci~Cg--~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 119 (160)
...|++|+ .|+.+||++++..... ...++...|++|+.|+.+||++||.+..
T Consensus 55 ~~~C~~C~~~~C~~~Cp~~ai~~~~~----------~v~i~~~~C~~C~~C~~~CP~~ai~~~~ 108 (181)
T PRK10330 55 ATVCRQCEDAPCANVCPNGAISRDKG----------FVHVMQERCIGCKTCVVACPYGAMEVVV 108 (181)
T ss_pred CCcCcCcCCcHHHHHcCcccEEccCC----------eEEeChhhCCCcchhhhhCCccCeEeec
Confidence 45799999 8999999999876431 3456888999999999999999998754
No 101
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=98.57 E-value=2.7e-08 Score=85.84 Aligned_cols=64 Identities=28% Similarity=0.593 Sum_probs=42.7
Q ss_pred CccccccchhhcHHhchh--ccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCc
Q psy4925 56 SGEERCIACKLCEAICPA--QAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~--~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
.|+++||+|++||++|-. |.-.+...+++.+.........-... ..||+|+++||+|||+.++.
T Consensus 141 ~dm~RCI~C~RCVR~c~eiaG~~~l~~~~rg~~~~i~t~~~~~l~s-e~cGncv~vCPvGALt~K~~ 206 (693)
T COG1034 141 YDMNRCILCTRCVRFCKEIAGTHELGVIKRGENSEIGTYLDQPLES-ELCGNCVDVCPVGALTSKPF 206 (693)
T ss_pred cccccceechhhHHhhhhhcCccccceeecCCCceeeccccccccc-ccccceeeeccccccccChH
Confidence 689999999999999984 32233333333333332222222222 78999999999999998775
No 102
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.55 E-value=2.1e-08 Score=85.50 Aligned_cols=56 Identities=39% Similarity=0.899 Sum_probs=44.0
Q ss_pred Cccccccch------hhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCC
Q psy4925 56 SGEERCIAC------KLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 119 (160)
Q Consensus 56 ~~~~~Ci~C------g~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 119 (160)
.+..+|+.| +.|+.+||.+++.....+. ...++...|+.|+.|+.+||++||.+..
T Consensus 501 ~~~~rCl~C~~c~~C~~C~~~Cp~~ai~~~~~~~--------~~~i~~~~C~~Cg~C~~~CP~~Ai~~~~ 562 (564)
T PRK12771 501 QEAARCLSCGNCFECDNCYGACPQDAIIKLGPGR--------RYHFDYDKCTGCHICADVCPCGAIEMGP 562 (564)
T ss_pred hhcccCcccccccccchhhhhCChhheeeecCCc--------eEEEecccCcChhHHHhhcCcCceEecc
Confidence 356677777 8999999999887543211 2457888999999999999999998754
No 103
>PRK13795 hypothetical protein; Provisional
Probab=98.55 E-value=2e-08 Score=86.74 Aligned_cols=55 Identities=36% Similarity=0.850 Sum_probs=44.7
Q ss_pred CCccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhccccccccc
Q psy4925 55 PSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVE 117 (160)
Q Consensus 55 ~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~ 117 (160)
.++.+.|++|+.|+.+||.+++...... ..+.++...|+.|+.|+++||.+++..
T Consensus 577 v~~~~~C~~Cg~C~~~CP~~ai~~~~~~--------~~~~id~~~C~~Cg~C~~aCP~~a~~~ 631 (636)
T PRK13795 577 LRRAAECVGCGVCVGACPTGAIRIEEGK--------RKISVDEEKCIHCGKCTEVCPVVKYKD 631 (636)
T ss_pred EEccccCCCHhHHHHhCCcccEEeecCC--------ceEEechhhcCChhHHHhhcCCCeeEe
Confidence 3457899999999999999998765421 124567789999999999999999875
No 104
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=98.54 E-value=1.9e-08 Score=49.57 Aligned_cols=21 Identities=38% Similarity=0.986 Sum_probs=14.4
Q ss_pred CccccccchhhcHHhchhccc
Q psy4925 56 SGEERCIACKLCEAICPAQAI 76 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i 76 (160)
+|.++|++||.|+.+||.+||
T Consensus 4 id~~~C~~Cg~C~~~Cp~~ai 24 (24)
T PF12837_consen 4 IDPDKCIGCGDCVRVCPEGAI 24 (24)
T ss_pred EChhhCcChhHHHHhcchhcC
Confidence 456677777777777776654
No 105
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=98.54 E-value=1.2e-08 Score=78.64 Aligned_cols=60 Identities=25% Similarity=0.583 Sum_probs=36.8
Q ss_pred CCccccccchhhcHHhchhccccchh-------hhhcCCCc-cc-------cccc-cCccCCcCcccchhcccccc
Q psy4925 55 PSGEERCIACKLCEAICPAQAITIEA-------EERADGSR-RT-------TRYD-IDMTKCIYCGFCQEACPVDA 114 (160)
Q Consensus 55 ~~~~~~Ci~Cg~Cv~~CP~~~i~~~~-------~~~~~~~~-~~-------~~~~-~~~~~C~~Cg~C~~~CP~~a 114 (160)
..+...||.||.|+++||+....... ........ .. .... ...+.|+.||.|.++||.+.
T Consensus 153 ~~~~~~CI~CG~C~saCP~~~~~~f~Gp~~~~~~l~p~~~~~r~~~~~~~~~~~~~~gv~~C~~Cg~Cs~VCPk~I 228 (250)
T PRK07570 153 AFDAAACIGCGACVAACPNGSAMLFTGAKVSHLALLPQGQPERARRVRAMVAQMDEEGFGNCTNTGECEAVCPKGI 228 (250)
T ss_pred hhCccccCCCcccccccCCcccccccchhhhhhhhCcccchhHHHHHHHHHHHHhccCcccCcccCccccccCCCC
Confidence 45678999999999999986432000 00000000 00 0011 34568999999999999984
No 106
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=98.53 E-value=1.2e-08 Score=77.32 Aligned_cols=58 Identities=28% Similarity=0.491 Sum_probs=35.8
Q ss_pred ccccccchhhcHHhchhccccchhhh----------hcCCC-----cccccc--ccCccCCcCcccchhcccccc
Q psy4925 57 GEERCIACKLCEAICPAQAITIEAEE----------RADGS-----RRTTRY--DIDMTKCIYCGFCQEACPVDA 114 (160)
Q Consensus 57 ~~~~Ci~Cg~Cv~~CP~~~i~~~~~~----------~~~~~-----~~~~~~--~~~~~~C~~Cg~C~~~CP~~a 114 (160)
+..+||+||.|+.+||+.....+..+ ..+.. ...... ....+.|+.||.|.++||.+.
T Consensus 136 ~~~~Ci~CG~C~~~CP~~~~~~~~~gp~~~~~~~r~~~d~~~~~~~~r~~~~~~~~~~~~C~~Cg~C~~~CP~~I 210 (220)
T TIGR00384 136 QLSGCILCGCCYSSCPAFWWNPEFLGPAALTAAYRFLIDSRDHATKDRLEGLNDKNGVWRCTTCMNCSEVCPKGV 210 (220)
T ss_pred hhhhccccccccccCCCCccCCCCcCHHHHHHHHHHhcCCCccchHHHHHHhhccCCCccCccccccccccCCCC
Confidence 46789999999999997532211100 00000 000011 235678999999999999983
No 107
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=98.52 E-value=4.2e-08 Score=78.92 Aligned_cols=61 Identities=28% Similarity=0.531 Sum_probs=41.7
Q ss_pred CccccccchhhcHHhchhccccchhhhhcCCCc--cccccccCccCCcCcccchhcccccccc
Q psy4925 56 SGEERCIACKLCEAICPAQAITIEAEERADGSR--RTTRYDIDMTKCIYCGFCQEACPVDAIV 116 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~--~~~~~~~~~~~C~~Cg~C~~~CP~~ai~ 116 (160)
++.+.|++|+.|+.+||++++.+.......... .......+...|+.||.|..+||..++.
T Consensus 9 i~~~~C~gCg~C~~~CP~~aI~~~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~C~~vCP~~~~~ 71 (341)
T PRK09326 9 IEYDVCTACGACEAVCPIGAITVDKKAEIRDPNDLELYEKGAAPNVCEGCLTCSRICPVVDGY 71 (341)
T ss_pred ECcccCcChHHHHHhCCHhhhecccCcccccccchhhhccCCCcCcCcCcCchhhhCCCCccc
Confidence 467899999999999999998875432100000 0001124667899999999999986643
No 108
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.51 E-value=2.9e-08 Score=86.06 Aligned_cols=64 Identities=28% Similarity=0.601 Sum_probs=47.0
Q ss_pred CCCccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcc------cchhcccccccccCCccc
Q psy4925 54 YPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCG------FCQEACPVDAIVEGPNFE 122 (160)
Q Consensus 54 ~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg------~C~~~CP~~ai~~~~~~~ 122 (160)
+.++.++|++|+.|+.+||.+++.+...... ......+...|..|+ .|+++||++||.+.+..+
T Consensus 80 ~~id~~~C~~C~~C~~~CP~~ai~~~~~~~~-----~~~~~~~~~~C~~C~~~~~~p~Cv~~CP~~Ai~~~~~~~ 149 (654)
T PRK12769 80 IQVNQQKCIGCKSCVVACPFGTMQIVLTPVA-----AGKVKATAHKCDLCAGRENGPACVENCPADALQLVTEQA 149 (654)
T ss_pred EEEecccccCcChhcccCCccCeeecccCCc-----ccceeeecCcCcCCCCCCCCCceeccCCcCcEEEecHHH
Confidence 3457789999999999999998876533210 012234567899998 899999999999876533
No 109
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=98.44 E-value=5.3e-08 Score=79.86 Aligned_cols=54 Identities=24% Similarity=0.524 Sum_probs=43.6
Q ss_pred CCccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcc---------cchhcccccccccCCc
Q psy4925 55 PSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCG---------FCQEACPVDAIVEGPN 120 (160)
Q Consensus 55 ~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg---------~C~~~CP~~ai~~~~~ 120 (160)
.++.++|++|+.|+.+||.+++.+.... ....+|.+|. +|+++||++|+.+...
T Consensus 210 ~ID~dkCiGCg~CV~ACPygAI~~n~~~------------g~~~KCd~C~~Rie~G~pPaCVeaCP~~Ar~fG~l 272 (492)
T TIGR01660 210 LIDQDKCRGWRMCISGCPYKKIYFNWKT------------GKSEKCIFCYPRIEAGQPTVCSETCVGRIRYLGVL 272 (492)
T ss_pred EEehhhccChHHHHHhCCCCCcEecCCC------------CccccCCCChhHHhCCCCCcchhhcChhhhhhhhh
Confidence 4678999999999999999998765421 2456899994 6999999999887644
No 110
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=98.38 E-value=1.5e-07 Score=78.06 Aligned_cols=58 Identities=28% Similarity=0.645 Sum_probs=38.5
Q ss_pred CccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhccccc
Q psy4925 56 SGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVD 113 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ 113 (160)
.+...|+.||.|+.+||.+.+...................+...|+.||.|..+||.+
T Consensus 360 ~~~~~Ci~Cg~C~~vCP~~l~p~~l~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~~ 417 (435)
T TIGR01945 360 SPEKPCIRCGKCVQVCPMNLLPQQLNWLALADEFDEAEEHNLMDCIECGCCSYVCPSN 417 (435)
T ss_pred ccCCcCcCccchhhhCccchhhHHHHHHhhhcccchhhcCCCCcCCcCCCcccccCCC
Confidence 4567999999999999987553321110000111112245667899999999999998
No 111
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=98.38 E-value=1e-07 Score=73.11 Aligned_cols=106 Identities=17% Similarity=0.184 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHhh-cCCCCcccCCCccCCCCCCccCccccccCCCccccccchhhcHHhchhccccchhhhh----
Q psy4925 9 AFLTEIFRGFFVATGHI-FKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEER---- 83 (160)
Q Consensus 9 ~~~~~~~~g~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~---- 83 (160)
..+.+|+.++...+..+ -+-..++.-.....+........++..........||.||.|..+||+.....+..+.
T Consensus 98 pVirDLvVD~~~~~~~~~~~v~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~CI~Cg~C~saCP~~~~~~~f~GP~~~~ 177 (239)
T PRK13552 98 KLIGDLSVNTGKWFREMSERVESWIHTDKEFDIHRLEERMEPEEADEIYELDRCIECGCCVAACGTKQMREDFVGAVGLN 177 (239)
T ss_pred CcceeCccccHHHHHHHHHhhcCccccCCCCCCcccccCCCHHHHHHhhchhhccccchhHhhCCCCccCCCccChHHHH
Confidence 34566666766666655 3333343311011101011222222222334567899999999999964322111100
Q ss_pred ------cCCCc--ccccc------ccCccCCcCcccchhcccccc
Q psy4925 84 ------ADGSR--RTTRY------DIDMTKCIYCGFCQEACPVDA 114 (160)
Q Consensus 84 ------~~~~~--~~~~~------~~~~~~C~~Cg~C~~~CP~~a 114 (160)
.+.+. ..... ....+.|+.|+.|.++||.+.
T Consensus 178 ~a~r~~~d~rd~~~~~~~~~~l~~~~gi~~C~~C~~C~~vCPk~I 222 (239)
T PRK13552 178 RIARFELDPRDERTDEDFYELIGNDDGVFGCMSLLGCEDNCPKDL 222 (239)
T ss_pred HHHHHhhCCCcchhHHHHHHHhccCCCcCCCcCcCccchhCCCCC
Confidence 01110 00001 134679999999999999873
No 112
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=98.37 E-value=3e-08 Score=75.29 Aligned_cols=103 Identities=20% Similarity=0.323 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcccCCCccCCCCCCccCccccccCCCccccccchhhcHHhchhccccchhhh-------
Q psy4925 10 FLTEIFRGFFVATGHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEE------- 82 (160)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~------- 82 (160)
.+.+++.++...+..+-+.+.++....+..+.. +.+.++......+...||.||.|+.+||......+..+
T Consensus 95 VIkDLVVD~~~f~~~~~~ikp~~~~~~~~~~~~--~~q~pe~~~~~~~~~~CI~Cg~C~s~CP~~~~~~~f~GPa~l~~a 172 (234)
T COG0479 95 VIRDLVVDMEEFYEKLRKIKPYLIRDDEPDPGE--RLQSPEEREKLDELSECILCGCCTAACPSIWWNPDFLGPAALRQA 172 (234)
T ss_pred ceeeeeeccHHHHHhhhccccceecCCcCCCcc--ccCCHHHHHHHHhhhhccccchhhhhCCccccccCCcCHHHHHHH
Confidence 456667777777776655554544422222222 44334443344456789999999999996433321111
Q ss_pred -------hcCCC-ccccccc--cCccCCcCcccchhcccccc
Q psy4925 83 -------RADGS-RRTTRYD--IDMTKCIYCGFCQEACPVDA 114 (160)
Q Consensus 83 -------~~~~~-~~~~~~~--~~~~~C~~Cg~C~~~CP~~a 114 (160)
+..++ .+..... ...+.|..|++|.++||.+.
T Consensus 173 ~R~~~D~rd~~~~~R~~~~~~~~gv~~C~~~~~C~~vCPK~i 214 (234)
T COG0479 173 YRFLADSRDEGTAERLKILEDPDGVWRCTTCGNCTEVCPKGI 214 (234)
T ss_pred HHHhcCCcccchHHHHHhccCCCCEecccccccccccCCCCC
Confidence 10110 0000111 13478999999999999984
No 113
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=98.36 E-value=7.8e-08 Score=47.36 Aligned_cols=22 Identities=55% Similarity=0.997 Sum_probs=20.1
Q ss_pred ccCccCCcCcccchhccccccc
Q psy4925 94 DIDMTKCIYCGFCQEACPVDAI 115 (160)
Q Consensus 94 ~~~~~~C~~Cg~C~~~CP~~ai 115 (160)
.+|.+.|++||.|+.+||.+||
T Consensus 3 ~id~~~C~~Cg~C~~~Cp~~ai 24 (24)
T PF12837_consen 3 VIDPDKCIGCGDCVRVCPEGAI 24 (24)
T ss_pred EEChhhCcChhHHHHhcchhcC
Confidence 5788899999999999999986
No 114
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.36 E-value=1.5e-07 Score=81.50 Aligned_cols=24 Identities=33% Similarity=0.861 Sum_probs=12.7
Q ss_pred CCCccccccchhhcHHhchhcccc
Q psy4925 54 YPSGEERCIACKLCEAICPAQAIT 77 (160)
Q Consensus 54 ~~~~~~~Ci~Cg~Cv~~CP~~~i~ 77 (160)
+.++.++|++|+.|+.+||.+++.
T Consensus 80 v~~d~~~C~gC~~C~~~CP~~ai~ 103 (639)
T PRK12809 80 VQLDEQKCIGCKRCAIACPFGVVE 103 (639)
T ss_pred eecChhhCcchhhHhhhcCCCCEE
Confidence 334455555555555555555543
No 115
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.36 E-value=1.3e-07 Score=84.98 Aligned_cols=60 Identities=28% Similarity=0.605 Sum_probs=40.4
Q ss_pred ccccccc----hhhcHHhchhcccc-chhhhhcCCCccccccccCccCCcCcccchhcccccccccCCc
Q psy4925 57 GEERCIA----CKLCEAICPAQAIT-IEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 57 ~~~~Ci~----Cg~Cv~~CP~~~i~-~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
+.++|.+ ||.|+.+||.+|+. +...+.... ...+..+ ..|+.||.|+++||++|+.+...
T Consensus 879 ~~~rC~~c~~~Cg~Cv~vCP~~Aii~i~~~~~~~~---~~~i~~d-~~C~~CG~C~~vCP~~a~~~~gk 943 (1012)
T TIGR03315 879 ESQRCLECSYVCEKCVDVCPNRANIVIYVPGFRDQ---FQIVHLD-GMCNECGNCATFCPYDGAPYKDK 943 (1012)
T ss_pred ccccccCCCCCCCChhhhCChhhhhccccccccCC---ceeeecC-ccccccchHHHhCCCCcccceee
Confidence 4579996 99999999999752 221000000 0011222 24999999999999999998776
No 116
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=98.35 E-value=3e-08 Score=75.77 Aligned_cols=104 Identities=14% Similarity=0.228 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcccCCCccCCCCCCccCccccccCCCccccccchhhcHHhchhccccchhhhhc----
Q psy4925 9 AFLTEIFRGFFVATGHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERA---- 84 (160)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~---- 84 (160)
..+++++.++...+..+-+...++.-. .. .........++......+...||.||.|..+||+-....+....+
T Consensus 96 pvikDLvvD~~~~~~~~~~~~p~l~~~-~~-~~~~~~~~~p~~~~~~~~~~~CI~CG~C~s~CP~~~~~~~~f~GP~~~~ 173 (235)
T PRK12575 96 PVVRDLIVDMTDFFNQYHSIRPYLIND-TV-PPERERLQTPQEREQLDGLYECILCACCSTACPSYWWNPDKFVGPAGLL 173 (235)
T ss_pred CccccceecCHHHHHHHHhccCccccC-CC-CccccccCCHHHHHHHHhhhhCcccccccccccCccccCCCcCCHHHHH
Confidence 345566666666655554444444321 11 111122222222222235678999999999999743321111100
Q ss_pred -------CCCc--ccccc-----ccCccCCcCcccchhcccccc
Q psy4925 85 -------DGSR--RTTRY-----DIDMTKCIYCGFCQEACPVDA 114 (160)
Q Consensus 85 -------~~~~--~~~~~-----~~~~~~C~~Cg~C~~~CP~~a 114 (160)
+++. ..... ....+.|+.|++|.++||.+.
T Consensus 174 ~a~r~~~D~rd~~~~~rl~~l~~~~gl~~C~~C~~C~~vCPkgI 217 (235)
T PRK12575 174 QAYRFIADSRDDATAARLDDLEDPYRLFRCRTIMNCVDVCPKGL 217 (235)
T ss_pred HHHHHHhCCCCCCcHHHHHhhhcCCCcccccCcchhccccCCCC
Confidence 0110 00011 123578999999999999984
No 117
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=98.34 E-value=4e-08 Score=75.73 Aligned_cols=59 Identities=22% Similarity=0.490 Sum_probs=35.8
Q ss_pred CccccccchhhcHHhchhccccchhhh--------h--cC--CC-ccccc---c--ccCccCCcCcccchhcccccc
Q psy4925 56 SGEERCIACKLCEAICPAQAITIEAEE--------R--AD--GS-RRTTR---Y--DIDMTKCIYCGFCQEACPVDA 114 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~--------~--~~--~~-~~~~~---~--~~~~~~C~~Cg~C~~~CP~~a 114 (160)
.+...||.||.|+.+||+....-+..+ + .+ +. ..... . ....+.|+.||.|.++||.+.
T Consensus 149 ~~~~~CI~CG~C~saCP~~~~~~~f~GP~~l~ka~r~~~d~~rd~~~~~rl~~l~~~~g~~~C~~Cg~C~~vCPkgI 225 (249)
T PRK08640 149 YELSKCMTCGCCLEACPNVNEKSDFIGPAAISQVRLFNAHPTGEMHKEERLRALMGDGGIADCGNAQNCVRVCPKGI 225 (249)
T ss_pred hhhhhccCcCcccccCCCCccCCCccChHHHHHHHHHhcCcCcCccHHHHHHHhhcCCCeeCCcCcCcccccCCCCC
Confidence 346789999999999996543211111 0 00 00 00001 1 123478999999999999884
No 118
>TIGR02486 RDH reductive dehalogenase. This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene.
Probab=98.34 E-value=1.9e-07 Score=74.24 Aligned_cols=56 Identities=30% Similarity=0.696 Sum_probs=36.4
Q ss_pred ccccchhhcHHhchhccccchhhhhcCC----------CccccccccCcc-----CCc-----Ccccchhcccccc
Q psy4925 59 ERCIACKLCEAICPAQAITIEAEERADG----------SRRTTRYDIDMT-----KCI-----YCGFCQEACPVDA 114 (160)
Q Consensus 59 ~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~----------~~~~~~~~~~~~-----~C~-----~Cg~C~~~CP~~a 114 (160)
+.|..|++|+.+||++||..+.....+. ........++.. .|. .|+.|+.+||.+.
T Consensus 205 ~fC~~C~~C~~~CP~~Ai~~~~~psw~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~C~~C~~~CPf~~ 280 (314)
T TIGR02486 205 KFCETCGKCADECPSGAISKGGEPTWDPEDSNGDPPGENNPGLKWQYDGWRCLLFRCYNEGGGGCGVCQAVCPFNK 280 (314)
T ss_pred ccCcchhHHHhhCCccccCCCCCCcccccccccccccccCCCcccccchhhcccccccCCCCCCCCCCeeECCCCC
Confidence 5799999999999999998764321111 000011122333 354 5999999999984
No 119
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.33 E-value=2e-07 Score=80.85 Aligned_cols=54 Identities=28% Similarity=0.610 Sum_probs=44.8
Q ss_pred ccccccchhh--cHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCc
Q psy4925 57 GEERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 57 ~~~~Ci~Cg~--Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
....|++|+. |+.+||++++..... .+.++...|++|+.|+.+||++||.+...
T Consensus 52 ~~~~C~~C~~~~C~~~CP~~ai~~~~~----------~~~id~~~C~~C~~C~~~CP~~ai~~~~~ 107 (654)
T PRK12769 52 SAVTCHHCEDAPCARSCPNGAISHVDD----------SIQVNQQKCIGCKSCVVACPFGTMQIVLT 107 (654)
T ss_pred CCccCCCCCChhHhhhCCccceeccCC----------eEEEecccccCcChhcccCCccCeeeccc
Confidence 3578999996 999999999876432 35678889999999999999999987543
No 120
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.32 E-value=2.3e-07 Score=83.28 Aligned_cols=61 Identities=25% Similarity=0.561 Sum_probs=42.1
Q ss_pred Cccccccch----hhcHHhchhccc-cchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCc
Q psy4925 56 SGEERCIAC----KLCEAICPAQAI-TIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 56 ~~~~~Ci~C----g~Cv~~CP~~~i-~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
.+.++|.+| |.|+.+||.+|+ .+...+ .......+.+ ...|++||.|+.+||+++-.+.+.
T Consensus 883 ~~~~rC~~C~~~C~~C~~vCP~~A~~~i~~~g---~~~~~~~~~~-~~~C~~CG~C~~~CP~~~~py~dk 948 (1019)
T PRK09853 883 QEAARCLECNYVCEKCVDVCPNRANVSIAVPG---FQNRFQIVHL-DAMCNECGNCAQFCPWNGKPYKDK 948 (1019)
T ss_pred ccccccCCcccccchhhhhCCcccccccccCC---cccCCceEEc-CccCccccchhhhCCCCCCccccc
Confidence 356799999 999999999983 222111 0000112333 488999999999999998766665
No 121
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=98.32 E-value=1.5e-07 Score=46.35 Aligned_cols=20 Identities=70% Similarity=1.301 Sum_probs=9.3
Q ss_pred CccCCcCcccchhccccccc
Q psy4925 96 DMTKCIYCGFCQEACPVDAI 115 (160)
Q Consensus 96 ~~~~C~~Cg~C~~~CP~~ai 115 (160)
+.+.|++||.|+.+||++||
T Consensus 4 d~~~C~~Cg~C~~~CP~~ai 23 (24)
T PF00037_consen 4 DPDKCIGCGRCVEACPFDAI 23 (24)
T ss_dssp ETTTSSS-THHHHHSTTSSE
T ss_pred chHHCCCcchhhhhcccccC
Confidence 33445555555555555544
No 122
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=98.31 E-value=1.3e-07 Score=46.59 Aligned_cols=22 Identities=41% Similarity=0.951 Sum_probs=18.5
Q ss_pred CccccccchhhcHHhchhcccc
Q psy4925 56 SGEERCIACKLCEAICPAQAIT 77 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~ 77 (160)
++.++|++||.|+.+||.+||.
T Consensus 3 id~~~C~~Cg~C~~~CP~~ai~ 24 (24)
T PF00037_consen 3 IDPDKCIGCGRCVEACPFDAIT 24 (24)
T ss_dssp EETTTSSS-THHHHHSTTSSEE
T ss_pred EchHHCCCcchhhhhcccccCC
Confidence 4678999999999999999873
No 123
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=98.31 E-value=1.3e-07 Score=76.02 Aligned_cols=52 Identities=29% Similarity=0.655 Sum_probs=40.6
Q ss_pred ccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccC
Q psy4925 61 CIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 118 (160)
Q Consensus 61 Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~ 118 (160)
|..|+.|+.+||++|+.+.... . ...+.++...|+.||.|+.+||++|+...
T Consensus 183 ~c~~~~Cv~~CP~~Ai~~~~~~-~-----~~~~~id~~~Ci~Cg~Ci~~CP~~a~~~~ 234 (341)
T TIGR02066 183 VCEIPSVVAACPTGALKPRRDG-K-----NKSLEVDVEKCIYCGNCYTMCPAMPIFDP 234 (341)
T ss_pred hcCCCceEeeCchhhceecccC-C-----CCceeeccccCCcCCchHHhCchhhccCC
Confidence 4566899999999999874221 0 11467899999999999999999998633
No 124
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=98.30 E-value=4.9e-07 Score=74.74 Aligned_cols=43 Identities=37% Similarity=0.889 Sum_probs=33.2
Q ss_pred cccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccc
Q psy4925 58 EERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 116 (160)
Q Consensus 58 ~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~ 116 (160)
.++|++|+.|+.+||++ +...+ .....|+.|+.|+++||. ++.
T Consensus 230 ~~~Ci~C~~Cv~vCP~g-i~~~~--------------~~~~~Ci~Cg~CidaCp~-a~~ 272 (434)
T TIGR02745 230 LGDCIDCNLCVQVCPTG-IDIRD--------------GLQLECINCGLCIDACDD-VME 272 (434)
T ss_pred CCCCCChhhhHHhCCCC-CEeCC--------------CCchhChhhhHHHHhCCC-hHH
Confidence 46899999999999998 43221 123579999999999997 443
No 125
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=98.30 E-value=6.4e-08 Score=75.42 Aligned_cols=105 Identities=16% Similarity=0.224 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcccCCCccCCCCCCccCccccccCCCccccccchhhcHHhchhccccch-hhhhc----
Q psy4925 10 FLTEIFRGFFVATGHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIE-AEERA---- 84 (160)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg~Cv~~CP~~~i~~~-~~~~~---- 84 (160)
.+.+++.++...+..+-+...++.-..............++..........||.||.|..+||+-....+ ..+..
T Consensus 138 VirDLvVD~~~f~~klk~v~p~l~~~~~~~~~~~~~~q~pe~~~~~~~~~~CI~CG~C~saCPv~~~~~~~flGP~~l~~ 217 (276)
T PLN00129 138 VIKDLVVDMTNFYQQYKSIEPWLKTKKPPEDGQKEHLQSKEDRAKLDGMYECILCACCSTSCPSYWWNPEKFLGPAALLH 217 (276)
T ss_pred eeeecccccHHHHHHHHhccccccCCCCCCCCccccCCCHHHHHHHhhhhhCccccccccccCCCcccCcccccHHHHHH
Confidence 4556666666666555444444432111111101222222222222345689999999999995322111 00000
Q ss_pred ------C--CCcccccc-----ccCccCCcCcccchhcccccc
Q psy4925 85 ------D--GSRRTTRY-----DIDMTKCIYCGFCQEACPVDA 114 (160)
Q Consensus 85 ------~--~~~~~~~~-----~~~~~~C~~Cg~C~~~CP~~a 114 (160)
+ ......+. ....+.|+.|+.|.++||.+.
T Consensus 218 a~R~~~D~RD~~~~erl~~l~~~~gl~~C~~C~~C~~vCPkgI 260 (276)
T PLN00129 218 AYRWISDSRDEYTKERLEALDDEFKLYRCHTIRNCSNACPKGL 260 (276)
T ss_pred HHHhcCCccccchHHHHHHHHhcCCCCcCcChhhccccCCCCC
Confidence 0 00000011 124588999999999999984
No 126
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.29 E-value=2.5e-07 Score=80.12 Aligned_cols=54 Identities=30% Similarity=0.690 Sum_probs=40.8
Q ss_pred ccccccchhh--cHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCc
Q psy4925 57 GEERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 57 ~~~~Ci~Cg~--Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
....|++|+. |+.+||++++..... ...++...|++|+.|+.+||++||.+...
T Consensus 52 ~~~~C~~C~~~~C~~~CP~~ai~~~~~----------~v~~d~~~C~gC~~C~~~CP~~ai~~~~~ 107 (639)
T PRK12809 52 NPVACHHCNNAPCVTACPVNALTFQSD----------SVQLDEQKCIGCKRCAIACPFGVVEMVDT 107 (639)
T ss_pred cCCCCcCcCChhHHhhCCcCceecccc----------ceecChhhCcchhhHhhhcCCCCEEccCC
Confidence 4678999996 999999999876432 34566677888888888888877766543
No 127
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=98.26 E-value=2.3e-07 Score=60.52 Aligned_cols=60 Identities=22% Similarity=0.549 Sum_probs=46.5
Q ss_pred ccccccCC-Cccccccchh--hcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccc-cccc
Q psy4925 48 EHALRRYP-SGEERCIACK--LCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPV-DAIV 116 (160)
Q Consensus 48 ~~~~~~~~-~~~~~Ci~Cg--~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~-~ai~ 116 (160)
+...+.+. .+...|..|. .|+.+||++.....+.+ .+.++...|.+||.|--+||. +.|.
T Consensus 21 De~~pHI~v~~~~~~~~~~~~~l~~aCPA~~Y~~~~~g---------~l~~~yegClECGTCRvlc~~~~~i~ 84 (99)
T COG2440 21 DEDHPHIIVKDPDDCQECEDKPLIKACPAGCYKLIDDG---------KLRFDYEGCLECGTCRVLCPHSGLIQ 84 (99)
T ss_pred cCCCCcEecCCchhhhhccchhhhhcCCHHHeeECCCC---------cEEEeecCeeeccceeEecCCCcceE
Confidence 33334443 3477899999 99999999988876644 678899999999999999999 4443
No 128
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=98.25 E-value=2.4e-07 Score=79.60 Aligned_cols=51 Identities=41% Similarity=0.866 Sum_probs=38.7
Q ss_pred ccCCCccccccchhhcHH--hchhccccchhhhhcCCCccccccccCccCCcCcccchhccccccc
Q psy4925 52 RRYPSGEERCIACKLCEA--ICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 115 (160)
Q Consensus 52 ~~~~~~~~~Ci~Cg~Cv~--~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai 115 (160)
..+.++.++|++|+.|+. +||... .++. ...++. .|+.||.|+++||++||
T Consensus 543 ~~~~id~~~C~~C~~C~~~~~CP~~~--~~~~----------~~~i~~-~C~~Cg~C~~~CP~~Ai 595 (595)
T TIGR03336 543 GPYKVDQDKCIGCKKCIKELGCPAIE--PEDK----------EAVIDP-LCTGCGVCAQICPFDAI 595 (595)
T ss_pred ceEEEcCCcCCCccccccccCCCCcc--ccCC----------cceeCC-CCcCHHHHHhhCccccC
Confidence 345567889999999999 999532 2111 234555 69999999999999986
No 129
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=98.25 E-value=8.4e-08 Score=73.25 Aligned_cols=103 Identities=16% Similarity=0.191 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcccCCCccCCCCCCccCccccccCCCccccccchhhcHHhchhccccch-hhhhc----
Q psy4925 10 FLTEIFRGFFVATGHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIE-AEERA---- 84 (160)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg~Cv~~CP~~~i~~~-~~~~~---- 84 (160)
.+++|+.++...+..+-....++. +.... .........+......+...|+.||.|..+||+.....+ ..+..
T Consensus 94 vikDLvvD~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~CP~~~~~~~~~~gp~~l~~ 171 (232)
T PRK05950 94 VIKDLVVDMTQFYAQYRSIKPYLI-NDTPP-PARERLQSPEDREKLDGLYECILCACCSTSCPSFWWNPDKFLGPAALLQ 171 (232)
T ss_pred eeeeceeehHHHHHHHHhccCeec-CCCCC-CchhccCCHHHHHHHHhHHhccccccccccCCccccCCCCCCCHHHHHH
Confidence 345555555555555444433333 11111 111222222222222346789999999999996432211 00000
Q ss_pred ------CCCc--cccc---c--ccCccCCcCcccchhcccccc
Q psy4925 85 ------DGSR--RTTR---Y--DIDMTKCIYCGFCQEACPVDA 114 (160)
Q Consensus 85 ------~~~~--~~~~---~--~~~~~~C~~Cg~C~~~CP~~a 114 (160)
+... .... . ....+.|+.||.|..+||.+.
T Consensus 172 ~~r~~~d~rd~~~~~~~~~~~~~~~i~~C~~Cg~C~~~CP~gi 214 (232)
T PRK05950 172 AYRFIADSRDEATGERLDILDDPFGVFRCHTIMNCVEVCPKGL 214 (232)
T ss_pred HHHHhhCCccchhHHHHHHhhcccccccCcCcCCcCccccCCC
Confidence 0000 0000 0 114578999999999999873
No 130
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=98.24 E-value=6.8e-08 Score=74.28 Aligned_cols=57 Identities=32% Similarity=0.701 Sum_probs=34.5
Q ss_pred ccccccchhhcHHhchhccccchhhhhc--------------CCCc-cccc--cccCccCCcCcccchhccccc
Q psy4925 57 GEERCIACKLCEAICPAQAITIEAEERA--------------DGSR-RTTR--YDIDMTKCIYCGFCQEACPVD 113 (160)
Q Consensus 57 ~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~--------------~~~~-~~~~--~~~~~~~C~~Cg~C~~~CP~~ 113 (160)
....||+||.|+.+||+-....+..+.. .+.. .... .....+.|+.||.|..+||.+
T Consensus 145 ~~~~CI~Cg~C~saCP~~~~~~~y~GP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~gl~~C~~C~~C~~vCP~~ 218 (244)
T PRK12385 145 QFSGCINCGLCYAACPQFGLNPEFIGPAAITLAHRYNLDSRDHGKKERMKQLNGQNGVWSCTFVGYCSEVCPKH 218 (244)
T ss_pred HHHhcCcCccccCcCcCcccCCCCCCHHHHHHHHHHhhcCCccchHHHHHhhcccchhhhCcCcccccccCCCC
Confidence 3568999999999999743221111100 0000 0000 123446899999999999997
No 131
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=98.22 E-value=1.3e-07 Score=75.80 Aligned_cols=105 Identities=16% Similarity=0.317 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcccCCCccCCCCCCccCccccccCCCccccccchhhcHHhchhccccchhhhh-----
Q psy4925 9 AFLTEIFRGFFVATGHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEER----- 83 (160)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~----- 83 (160)
..+++++.++...+..+.+...++.-... ......+...++..........||.||.|+.+||+....-+..+.
T Consensus 103 pvikDLvVD~~~~~~k~~~v~p~~~~~~~-~~~~~e~~~~p~~~~~~~~~~~Ci~CG~C~s~CP~~~~~~~f~GP~~~~~ 181 (329)
T PRK12577 103 PVIKDLVVDMSSFWQNLEAVDPYVSTAAR-QVPEREFLQTPEERSKLDQTGNCILCGACYSECNAREVNPEFVGPHALAK 181 (329)
T ss_pred CccccceeccHHHHHHHHhccCccccCCC-CCCcccccCCHHHHHHHHHhhhCcccCcccccCCCCCcCcCcCCHHHHHH
Confidence 34566666776666666554434332111 111122222222222222356799999999999964322111100
Q ss_pred -----cCCCc--cccccc------cCccCCcCcccchhcccccc
Q psy4925 84 -----ADGSR--RTTRYD------IDMTKCIYCGFCQEACPVDA 114 (160)
Q Consensus 84 -----~~~~~--~~~~~~------~~~~~C~~Cg~C~~~CP~~a 114 (160)
.++.. ...... ...+.|+.|+.|..+||.+.
T Consensus 182 a~r~~~d~rd~~~~~~l~~~~~~~~giw~C~~C~~C~~~CPk~I 225 (329)
T PRK12577 182 AQRMVADSRDTATEQRLELYNQGTAGVWGCTRCYYCNSVCPMEV 225 (329)
T ss_pred HHHHhhCCcchhHHHHHHHHhcCCCccccCcChhhhhhhCCCCC
Confidence 00000 000111 12578999999999999874
No 132
>TIGR00276 iron-sulfur cluster binding protein, putative. This series of proteins contain the prosite signature for 4Fe-4S ferredoxins iron-sulfur binding proteins (C-x(2)-C-x(2)-C-x(3)-C-[PEG]) between residues 175-188 of the model.
Probab=98.22 E-value=7.4e-07 Score=69.91 Aligned_cols=60 Identities=27% Similarity=0.492 Sum_probs=38.0
Q ss_pred cccccchhhcHHhchhccccchhhhhc----------CCCccccccccCccCCc-Ccccchhccccccccc
Q psy4925 58 EERCIACKLCEAICPAQAITIEAEERA----------DGSRRTTRYDIDMTKCI-YCGFCQEACPVDAIVE 117 (160)
Q Consensus 58 ~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~----------~~~~~~~~~~~~~~~C~-~Cg~C~~~CP~~ai~~ 117 (160)
.+.|..|+.|+.+||++||........ .+......+..+...|+ +|+.|+.+||.+....
T Consensus 158 ~~~C~~C~~C~~aCPt~AI~~~~~~d~~~C~sy~ti~~~~~~~~~~~~~~~~~~~gCd~Cq~vCP~n~~~~ 228 (282)
T TIGR00276 158 EEYCGRCTKCIDACPTQALVEPEFVDAPRCISYLTIEKDAALPKEFASNCGGRSYGCDICQEVCPWNKKGQ 228 (282)
T ss_pred CCCCccHHHHHHhcCcccccCCCccCHHHHHHHhcccCCCcCCHHHHHHhcCcccCCCCccccCCCCCCCC
Confidence 568999999999999999863211000 00001111223345675 6999999999996433
No 133
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=98.19 E-value=4.5e-07 Score=64.31 Aligned_cols=56 Identities=32% Similarity=0.608 Sum_probs=33.2
Q ss_pred ccccchhhcHHhchhcccc---chhhhhc--CCCccccccccCccCCcCcccchhcccccc
Q psy4925 59 ERCIACKLCEAICPAQAIT---IEAEERA--DGSRRTTRYDIDMTKCIYCGFCQEACPVDA 114 (160)
Q Consensus 59 ~~Ci~Cg~Cv~~CP~~~i~---~~~~~~~--~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~a 114 (160)
+.|+.||.|..+||+.... ....... .+...........+.|+.||.|..+||.+.
T Consensus 2 ~~Ci~CG~C~~~CP~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~C~~Cg~C~~~CP~~i 62 (144)
T TIGR03290 2 KACYQCGTCTGSCPSGRRTSYRTRLIIRKALLGLKDEVISDDDLWMCTTCYTCQERCPRDV 62 (144)
T ss_pred ccccCCCCCcCcCCCccccCCCHHHHHHHHHccchhhhccCCCCCcCcCcCchhhhcCCCC
Confidence 4699999999999974211 0000000 000000011124568999999999999884
No 134
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=98.15 E-value=2.1e-07 Score=71.73 Aligned_cols=59 Identities=24% Similarity=0.452 Sum_probs=35.5
Q ss_pred CccccccchhhcHHhchhccccch---hhhhcCC-C-------------cc--ccccccCccCCcCcccchhcccccc
Q psy4925 56 SGEERCIACKLCEAICPAQAITIE---AEERADG-S-------------RR--TTRYDIDMTKCIYCGFCQEACPVDA 114 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~~---~~~~~~~-~-------------~~--~~~~~~~~~~C~~Cg~C~~~CP~~a 114 (160)
.....||.||.|+.+||+-..... +...+.+ . .+ ........+.|..|+.|.++||.+.
T Consensus 139 ~~~~~CI~CG~C~s~CPv~~~~~~~~~~f~GP~~~~~a~r~~~D~Rd~~~rl~~~~~~~gl~~C~~C~~C~~vCPkgI 216 (251)
T PRK12386 139 QEFRKCIECFLCQNVCHVVRDHEENKPAFAGPRFLMRIAELEMHPLDTADRRAEAQEEHGLGYCNITKCCTEVCPEHI 216 (251)
T ss_pred hchhhcccCCcccCcCCcccccCCCcccccCHHHHHHHHHhhcCccchHHHHHHhhcccCcccCcCCCCcCCcCCCCc
Confidence 356789999999999996432100 0000000 0 00 0011234677999999999999984
No 135
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=98.13 E-value=5.4e-07 Score=78.45 Aligned_cols=58 Identities=21% Similarity=0.557 Sum_probs=36.3
Q ss_pred CccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccc
Q psy4925 56 SGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDA 114 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~a 114 (160)
...++|++||.|+.+||.+... ..............+......|+.||.|+++||.+.
T Consensus 396 ~~~~kCI~CG~Cv~aCP~~l~i-~e~i~~a~~G~l~~l~~~~d~C~~CG~C~evCP~gI 453 (784)
T TIGR00314 396 ELANKCTQCGNCVRTCPNSLRV-DEAMAHAQKGDLSKLEQLEEQCYACGRCEQACPKNI 453 (784)
T ss_pred hhcccCCCcccchhhCCCCcch-HHHHHHHhcCCccccccCHhhhhhhhHHhccCCCCC
Confidence 3468999999999999986321 111000000000112234568999999999999983
No 136
>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B ....
Probab=98.12 E-value=4e-07 Score=55.00 Aligned_cols=54 Identities=26% Similarity=0.648 Sum_probs=24.4
Q ss_pred cccchhhcHHhchhccccchhhhhc-----CCCccccccccCccCCcCcccchhccccc
Q psy4925 60 RCIACKLCEAICPAQAITIEAEERA-----DGSRRTTRYDIDMTKCIYCGFCQEACPVD 113 (160)
Q Consensus 60 ~Ci~Cg~Cv~~CP~~~i~~~~~~~~-----~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ 113 (160)
+|+.||.|+.+||.+.......... .+...........+.|+.||.|..+||.+
T Consensus 1 ~C~~Cg~C~~~CP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ 59 (61)
T PF13534_consen 1 ACTQCGYCVPACPSYIATPDEPRSPMRAIYLGKIDEISESHAASLCIGCGLCESVCPQG 59 (61)
T ss_dssp T----STTGGGSHHHHHCTTTHHHHHHHHHHCHCHTTHHHTTTTT--S--HHHHH-TT-
T ss_pred CCCCCCcCcccCCCccccCccHHHHHHHHHHhcchhhhhCcccccCcCcCcCcccccCC
Confidence 4999999999999864421111000 00000111125667899999999999987
No 137
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=98.12 E-value=5.7e-07 Score=78.36 Aligned_cols=58 Identities=29% Similarity=0.660 Sum_probs=37.0
Q ss_pred CccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccc
Q psy4925 56 SGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDA 114 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~a 114 (160)
...++|++|+.|+.+||.+........... ...........+.|+.||.|.++||++.
T Consensus 401 ~eadrCI~CG~Cv~aCP~~l~i~~~I~~a~-~G~~~~l~~l~~~Ct~CG~CeeVCPtgI 458 (781)
T PRK00941 401 ELAKKCTECGWCVRVCPNELPIPEAMEAAA-KGDLSKLEDLYDKCIGCGRCEQVCPKNI 458 (781)
T ss_pred HhhhhCcCCCCccccCCCCcchhHHHHHHh-cCChhhhhhhhhhccchhHHhhhCCCCC
Confidence 356889999999999998642211110000 0000112234578999999999999984
No 138
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=98.08 E-value=5e-07 Score=78.52 Aligned_cols=57 Identities=26% Similarity=0.649 Sum_probs=36.7
Q ss_pred CccccccchhhcHHhchhccccchhhh-hcCCCccccccccCccCCcCcccchhcccccc
Q psy4925 56 SGEERCIACKLCEAICPAQAITIEAEE-RADGSRRTTRYDIDMTKCIYCGFCQEACPVDA 114 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~-~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~a 114 (160)
...++|++||.|+.+||++........ ...+. ..........|+.||.|+++||+++
T Consensus 362 ~~~~kCI~CG~Cv~aCP~~l~i~e~i~~~~~G~--~~~l~~~~~~Ct~CG~C~evCP~gI 419 (731)
T cd01916 362 ELAAKCTDCGWCTRACPNSLRIKEAMEAAKEGD--FSGLADLFDQCVGCGRCEQECPKEI 419 (731)
T ss_pred HhhhcCCCCCcccccCCCCCcHHHHHHHHhcCC--hhhhhhhHhhhhhhhHHhhhCCCCC
Confidence 346789999999999998733111110 00010 0112223578999999999999986
No 139
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=98.04 E-value=1.7e-06 Score=73.32 Aligned_cols=59 Identities=36% Similarity=0.706 Sum_probs=44.7
Q ss_pred ccCCCccccccchhhcH--HhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCc
Q psy4925 52 RRYPSGEERCIACKLCE--AICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 52 ~~~~~~~~~Ci~Cg~Cv--~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
..+.+|.++|.+|+.|. ..||.- ....... +..+|...|.+||.|+++||..||....+
T Consensus 570 ~~~~Vd~~~CtGC~~C~~~~~Cpsi--~~~~~~~--------k~~id~~~C~GCg~C~~iCP~~a~~~~~~ 630 (640)
T COG4231 570 PKYFVDEEKCTGCGDCIVLSGCPSI--EPDPTFK--------KARIDPSSCNGCGSCVEVCPSFAIKEGGE 630 (640)
T ss_pred CCceechhhcCCcHHHHhhcCCceE--eecCCCC--------ceeecccccccchhhhhcCchhheecccc
Confidence 33567899999999998 459963 3222111 56788888999999999999999887543
No 140
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=97.97 E-value=1.7e-06 Score=71.37 Aligned_cols=56 Identities=34% Similarity=0.719 Sum_probs=39.2
Q ss_pred cccccc--chh-hcHHhchh-----ccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCc
Q psy4925 57 GEERCI--ACK-LCEAICPA-----QAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 57 ~~~~Ci--~Cg-~Cv~~CP~-----~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
|.++|. .|+ .|.+.||. .+|.+++.. ....+....|++||.|+..||.+||.+-.-
T Consensus 9 d~D~C~PkkC~~eC~~yCP~vrtg~~~I~i~~~~--------gkpvIsE~lCiGCGICvkkCPF~AI~IvnL 72 (591)
T COG1245 9 DYDRCQPKKCGYECIKYCPVVRTGKETIEIDEDT--------GKPVISEELCIGCGICVKKCPFDAISIVNL 72 (591)
T ss_pred ehhccCccccchhhhhcCCCccCCCeeEEecCCC--------CCceeEhhhhccchhhhccCCcceEEEecC
Confidence 445565 455 89999995 244443321 134677788999999999999999986443
No 141
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=97.96 E-value=2.1e-06 Score=70.13 Aligned_cols=57 Identities=25% Similarity=0.624 Sum_probs=36.0
Q ss_pred cccccchhhcHHhchhccccchhhhhcCCCcc--------ccccccCccCCcCcccchhcccccc
Q psy4925 58 EERCIACKLCEAICPAQAITIEAEERADGSRR--------TTRYDIDMTKCIYCGFCQEACPVDA 114 (160)
Q Consensus 58 ~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~--------~~~~~~~~~~C~~Cg~C~~~CP~~a 114 (160)
...||+||.|..+||+........+....... ........+.|++|+.|..+||.+.
T Consensus 6 ~~~Ci~Cg~C~~~CP~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~i 70 (396)
T PRK11168 6 FDSCIKCTVCTTACPVARVNPLYPGPKQAGPDGERLRLKDGALYDESLKYCSNCKRCEVACPSGV 70 (396)
T ss_pred hhhcCCCCCCCccCCCcccCCCCCChhhhccHHHHHhccchhhcCCCCCcCcCcCccCcccCCCC
Confidence 46799999999999986543111000000000 0112235578999999999999984
No 142
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=97.92 E-value=3.1e-06 Score=70.26 Aligned_cols=57 Identities=12% Similarity=0.088 Sum_probs=39.6
Q ss_pred ccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcC--cccchhccccc
Q psy4925 57 GEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIY--CGFCQEACPVD 113 (160)
Q Consensus 57 ~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~--Cg~C~~~CP~~ 113 (160)
....||.||.|+++||.+.+...-...............+...|+. ||.|..+||.+
T Consensus 371 ~~~aCI~CG~C~~vCPm~L~P~~L~~a~~~~d~d~a~~lg~~ecieedCG~CsyVCPSk 429 (447)
T TIGR01936 371 GERAMIPIGIYERVMPLDIPPTLLLKALIAGDFDKAQRLGALEVDEEDFALCTFVDPSK 429 (447)
T ss_pred CccceeECChHhhcCCCCCCHHHHHHHHHcCCHHHHHHCCCcccCccccccCceECCCC
Confidence 3456999999999999986654432222222222233466678988 99999999998
No 143
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=97.91 E-value=3e-06 Score=36.93 Aligned_cols=14 Identities=36% Similarity=1.236 Sum_probs=6.8
Q ss_pred ccchhhcHHhchhc
Q psy4925 61 CIACKLCEAICPAQ 74 (160)
Q Consensus 61 Ci~Cg~Cv~~CP~~ 74 (160)
|++|+.|+.+||++
T Consensus 1 C~~C~~C~~~Cp~~ 14 (15)
T PF12798_consen 1 CTGCGACVEVCPTG 14 (15)
T ss_pred CCCchHHHHHhcCC
Confidence 44455555555544
No 144
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=97.91 E-value=2.9e-06 Score=40.49 Aligned_cols=18 Identities=50% Similarity=1.158 Sum_probs=13.6
Q ss_pred CccccccchhhcHHhchh
Q psy4925 56 SGEERCIACKLCEAICPA 73 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~ 73 (160)
+|.++||+|+.|+.+||+
T Consensus 5 iD~~rCiGC~~C~~AC~~ 22 (22)
T PF12797_consen 5 IDLERCIGCGACEVACPV 22 (22)
T ss_pred EccccccCchhHHHhhCc
Confidence 567778888888888873
No 145
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=97.89 E-value=3.9e-06 Score=69.77 Aligned_cols=60 Identities=10% Similarity=0.084 Sum_probs=40.2
Q ss_pred ccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcC--cccchhccccccccc
Q psy4925 57 GEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIY--CGFCQEACPVDAIVE 117 (160)
Q Consensus 57 ~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~--Cg~C~~~CP~~ai~~ 117 (160)
....||.||.|+.+||.+.....-...............+...|+. ||.|.-+||.+ |.+
T Consensus 372 ~~~~CI~Cg~C~~vCP~~L~P~~l~ra~~~~d~~~~e~~~~~~C~EedCG~CsyVCPsk-ipL 433 (448)
T PRK05352 372 SERAMVPIGNYERVMPLDILPTQLLRALIVGDTDEAQALGALELDEEDLALCTFVCPGK-YEY 433 (448)
T ss_pred CCcceeecCcHhhcCCCCCCHHHHHHHHHcCCHHHHHHcCchhcCccccCCCccCCCCC-chH
Confidence 3568999999999999875543322211111111123467778999 99999999998 443
No 146
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=97.87 E-value=4.9e-06 Score=36.24 Aligned_cols=15 Identities=53% Similarity=1.287 Sum_probs=14.0
Q ss_pred CcCcccchhcccccc
Q psy4925 100 CIYCGFCQEACPVDA 114 (160)
Q Consensus 100 C~~Cg~C~~~CP~~a 114 (160)
|++|+.|+++||++|
T Consensus 1 C~~C~~C~~~Cp~~A 15 (15)
T PF12798_consen 1 CTGCGACVEVCPTGA 15 (15)
T ss_pred CCCchHHHHHhcCCC
Confidence 789999999999987
No 147
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=97.85 E-value=4.4e-06 Score=69.20 Aligned_cols=59 Identities=27% Similarity=0.461 Sum_probs=35.1
Q ss_pred CccccccchhhcHHhchhccccchh-----hhhcCCCcc------ccccccCccCCcCcccchhcccccc
Q psy4925 56 SGEERCIACKLCEAICPAQAITIEA-----EERADGSRR------TTRYDIDMTKCIYCGFCQEACPVDA 114 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~~~-----~~~~~~~~~------~~~~~~~~~~C~~Cg~C~~~CP~~a 114 (160)
.+..+||.||.|..+||+-...-.. .....+... ..........|..||.|.++||.+.
T Consensus 290 ~e~~~CIrCG~C~~~CPvy~~~g~~~~~~~~~Gp~G~v~~~~~~g~~~~~~~~~~C~~Cg~C~~vCP~gI 359 (432)
T TIGR00273 290 REVLACIRCGACQNECPVYRHIGGHWYGSIYPGPIGAVWSPLLGGYTDYKHLPYLSSLCGACREVCPVKI 359 (432)
T ss_pred hhHhhCCCCCCccccCcchhccCccccccccCChHHHHHHHHhcccccccccCccchhhhhhhccCCCCC
Confidence 3567999999999999964221100 000000000 0011123468999999999999983
No 148
>PRK13409 putative ATPase RIL; Provisional
Probab=97.83 E-value=5.2e-06 Score=71.39 Aligned_cols=55 Identities=35% Similarity=0.759 Sum_probs=38.8
Q ss_pred cccccc--chh-hcHHhchhc-----cccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCC
Q psy4925 57 GEERCI--ACK-LCEAICPAQ-----AITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 119 (160)
Q Consensus 57 ~~~~Ci--~Cg-~Cv~~CP~~-----~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 119 (160)
+.++|. .|+ .|.+.||.. +|.++... ....+....|++||.|+..||.+||.+-.
T Consensus 8 ~~~~c~~~~c~~~c~~~cp~~~~~~~~~~~~~~~--------~~~~~~e~~c~~c~~c~~~cp~~a~~i~~ 70 (590)
T PRK13409 8 DYDRCQPKKCNYECIKYCPVVRTGEETIEIDEDD--------GKPVISEELCIGCGICVKKCPFDAISIVN 70 (590)
T ss_pred eccccCcchhhhhHHhhCCCcccCCeEEEEcCCC--------CCceeeHhhccccccccccCCcceEEEee
Confidence 456665 577 799999952 33332111 14567778899999999999999988644
No 149
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=97.74 E-value=8.9e-06 Score=66.62 Aligned_cols=57 Identities=33% Similarity=0.730 Sum_probs=34.7
Q ss_pred cccccchhhcHHhchhccccchhhhhc----CCCc----cccccccCccCCcCcccchhcccccc
Q psy4925 58 EERCIACKLCEAICPAQAITIEAEERA----DGSR----RTTRYDIDMTKCIYCGFCQEACPVDA 114 (160)
Q Consensus 58 ~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~----~~~~----~~~~~~~~~~~C~~Cg~C~~~CP~~a 114 (160)
.+.||.||.|..+||+-...-...+.. .+.. ....+....+.|..|+.|..+||.+.
T Consensus 4 ~~~Ci~Cg~C~~~Cp~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~C~~C~~C~~~CP~~i 68 (397)
T TIGR03379 4 FESCIKCTVCTVYCPVAKANPLYPGPKQAGPDGERLRLKSAELYDEALKYCTNCKRCEVACPSDV 68 (397)
T ss_pred hhhCCCCCCCcccCcCccccCCccCcccCCcHHHHHhcccchhcccccccCcCcCccchhcCCCC
Confidence 467999999999999743321100000 0000 00011234678999999999999984
No 150
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=97.72 E-value=8e-06 Score=68.62 Aligned_cols=58 Identities=28% Similarity=0.690 Sum_probs=35.6
Q ss_pred CccccccchhhcHHhchhccccchhhh----------hcCCCcc----ccccccCccCCcCcccchhcccccc
Q psy4925 56 SGEERCIACKLCEAICPAQAITIEAEE----------RADGSRR----TTRYDIDMTKCIYCGFCQEACPVDA 114 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~----------~~~~~~~----~~~~~~~~~~C~~Cg~C~~~CP~~a 114 (160)
.+...|+.||.|..+||+.... +..+ ....... ........+.|+.||.|..+||.+.
T Consensus 130 ~~~~~Ci~CG~C~~~CP~~~~~-~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~gi 201 (486)
T PRK06259 130 KKLRGCIECLSCVSTCPARKVS-DYPGPTFMRQLARFAFDPRDEGDREKEAFDEGLYNCTTCGKCVEVCPKEI 201 (486)
T ss_pred hCchhcccCccccccCCCCccc-cCcCHHHHHHHHHHhhCCcchhhHHHHHhcCCCcCCCCcCcccCcCCCCC
Confidence 3467899999999999975321 0000 0000000 0012234578999999999999873
No 151
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=97.67 E-value=6.4e-06 Score=67.63 Aligned_cols=57 Identities=23% Similarity=0.742 Sum_probs=34.3
Q ss_pred cccccchhhcHHhchhccccchhhhhcCC-----------CccccccccCccCCcCcccchhcccccc
Q psy4925 58 EERCIACKLCEAICPAQAITIEAEERADG-----------SRRTTRYDIDMTKCIYCGFCQEACPVDA 114 (160)
Q Consensus 58 ~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~-----------~~~~~~~~~~~~~C~~Cg~C~~~CP~~a 114 (160)
.+.|++||.|..+||+-...-.......+ ...........+.|+.|+.|..+||.+.
T Consensus 22 ~~~C~~Cg~C~~~CP~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~v 89 (407)
T PRK11274 22 LRKCVHCGFCTATCPTYQLLGDELDGPRGRIYLIKQVLEGAEVTEKTQLHLDRCLTCRNCETTCPSGV 89 (407)
T ss_pred HHhCccCCCccccCCcccccCCcccChhHHHHHHHHHhccCccchhhccccccCccccchhhhCCCCC
Confidence 35799999999999964222111111101 0000111223568999999999999973
No 152
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=97.61 E-value=2.1e-05 Score=64.26 Aligned_cols=56 Identities=29% Similarity=0.506 Sum_probs=33.1
Q ss_pred ccccchhhcHHhchhcccc-----chhhhhcCCCcccc------ccccCccCCcCcccchhcccccc
Q psy4925 59 ERCIACKLCEAICPAQAIT-----IEAEERADGSRRTT------RYDIDMTKCIYCGFCQEACPVDA 114 (160)
Q Consensus 59 ~~Ci~Cg~Cv~~CP~~~i~-----~~~~~~~~~~~~~~------~~~~~~~~C~~Cg~C~~~CP~~a 114 (160)
-.||.||.|..+||+-... ......+.+....+ ........|..||.|.++||.+.
T Consensus 308 L~CIRCGaC~n~CPvY~~iGgh~y~~~Y~GPiG~v~s~~~~g~~~~~~~~~~c~lcg~C~evCPv~I 374 (459)
T COG1139 308 LRCIRCGACLNHCPVYRHIGGHAYGSIYPGPIGVVWSPILGGYDAAGDLPYACSLCGACTEVCPVKI 374 (459)
T ss_pred HHhhcchHhhhcChhhhhccCeecccccCCcccceecchhcchhhccccchhhccccCCCCcCCCCC
Confidence 4799999999999963111 00011111111111 11223456999999999999883
No 153
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=97.60 E-value=1.4e-05 Score=64.32 Aligned_cols=20 Identities=35% Similarity=0.859 Sum_probs=16.8
Q ss_pred ccCCcCcccchhccccccccc
Q psy4925 97 MTKCIYCGFCQEACPVDAIVE 117 (160)
Q Consensus 97 ~~~C~~Cg~C~~~CP~~ai~~ 117 (160)
...|++||.|.++||.+ |.+
T Consensus 306 ~~~CvgCGrC~~~CP~~-I~i 325 (344)
T PRK15055 306 YHMCVGCGRCDDRCPEY-ISF 325 (344)
T ss_pred hhhCcCcCccccccCCC-CCH
Confidence 35799999999999998 444
No 154
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=97.60 E-value=2.1e-05 Score=37.56 Aligned_cols=20 Identities=55% Similarity=1.240 Sum_probs=17.6
Q ss_pred cccCccCCcCcccchhcccc
Q psy4925 93 YDIDMTKCIYCGFCQEACPV 112 (160)
Q Consensus 93 ~~~~~~~C~~Cg~C~~~CP~ 112 (160)
+.+|.+.|++|+.|+.+||.
T Consensus 3 ~~iD~~rCiGC~~C~~AC~~ 22 (22)
T PF12797_consen 3 MVIDLERCIGCGACEVACPV 22 (22)
T ss_pred eEEccccccCchhHHHhhCc
Confidence 35788999999999999984
No 155
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=97.59 E-value=2.9e-05 Score=62.11 Aligned_cols=56 Identities=23% Similarity=0.539 Sum_probs=34.7
Q ss_pred cccccchhhcHHhchhccccchhhhhcCC--------Cccc-cccccCccCC-cCcccchhccccc
Q psy4925 58 EERCIACKLCEAICPAQAITIEAEERADG--------SRRT-TRYDIDMTKC-IYCGFCQEACPVD 113 (160)
Q Consensus 58 ~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~--------~~~~-~~~~~~~~~C-~~Cg~C~~~CP~~ 113 (160)
.+.|-.|.+|+.+||++|++......... .... ..+-.....+ .+|+.|+.+||.+
T Consensus 184 ~~~Cg~C~~CldaCPt~Al~~~~~~~~~~cis~lt~~~~~~p~e~r~~~~n~iygCd~C~~vCPwn 249 (337)
T COG1600 184 EDHCGSCTRCLDACPTGALVAPYTVDARRCISYLTIEKGGAPEEFRPLIGNRIYGCDICQKVCPWN 249 (337)
T ss_pred CccChhhHHHHhhCCcccccCCCccchhHHhhhhhhhccCCcHHHHHhccCceecCchHHHhCCcc
Confidence 38899999999999999997543221100 0000 1111122223 3799999999998
No 156
>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A ....
Probab=97.57 E-value=5.8e-06 Score=49.60 Aligned_cols=52 Identities=25% Similarity=0.514 Sum_probs=26.6
Q ss_pred ccccccchhhcHHhchhccccchhhhhcCCCccccccccCcc----CCcCcccchhcccccccc
Q psy4925 57 GEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMT----KCIYCGFCQEACPVDAIV 116 (160)
Q Consensus 57 ~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~----~C~~Cg~C~~~CP~~ai~ 116 (160)
|.++||+||.|+..+|. .+.+++.+.. .+..+.. .=..+...++.||++||+
T Consensus 2 D~~~Ci~Cg~C~~~aP~-vF~~~d~~~~-------~~v~~~~~~~~~~~~~~~A~~~CP~~aI~ 57 (58)
T PF13370_consen 2 DRDKCIGCGLCVEIAPD-VFDYDDDGGK-------AVVLDQPVPEEEEEAAREAAESCPTAAIR 57 (58)
T ss_dssp -TTT--S-SHHHHH-TT-TEEEETTSTE-------EECTTCCCSHCHHHHHHHHHHHSTT--EE
T ss_pred ChhhCcCCChHHHhCcH-heeEcCCCCe-------EEEeCCCcChHHHHHHHHHHHcCCHhhcC
Confidence 46789999999999995 3554443211 1111111 112357899999999986
No 157
>PRK13984 putative oxidoreductase; Provisional
Probab=97.52 E-value=3.3e-05 Score=66.55 Aligned_cols=27 Identities=26% Similarity=0.586 Sum_probs=22.2
Q ss_pred CCCccccccchhhcHHhchhccccchh
Q psy4925 54 YPSGEERCIACKLCEAICPAQAITIEA 80 (160)
Q Consensus 54 ~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~ 80 (160)
..++...|+.|+.|+.+||++++.+..
T Consensus 81 ~~i~~~~c~~c~~c~~~Cp~~Ai~~~~ 107 (604)
T PRK13984 81 PVIDYGRCSFCALCVDICTTGSLKMTR 107 (604)
T ss_pred cccCcccCcCcchHHhhCCcCcEEecc
Confidence 345678899999999999999877643
No 158
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=97.51 E-value=2e-05 Score=57.98 Aligned_cols=58 Identities=24% Similarity=0.538 Sum_probs=37.6
Q ss_pred cccccchhhcHHhchhccccchhhhhcC------CCccccccccCccCCcCcccchhcccccccc
Q psy4925 58 EERCIACKLCEAICPAQAITIEAEERAD------GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 116 (160)
Q Consensus 58 ~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~------~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~ 116 (160)
...|.+||.|...||++-. .+...+.. +.........+.+.|+.|..|..-||.+...
T Consensus 38 l~~C~QCG~CT~sCPs~r~-t~y~pR~ii~~~~~g~~d~il~~~~lW~C~tCytC~eRCPr~v~i 101 (195)
T COG1150 38 LEGCYQCGTCTGSCPSGRF-TDYSPRKIIRKARLGLVDLILSSESLWACVTCYTCTERCPRGVKI 101 (195)
T ss_pred HhHhhccCcccCCCCCccc-CCCCHHHHHHHHHcccHHHHhcCCcceeeeechhhhhhCCCCCCH
Confidence 3459999999999998644 22211110 0000112345778999999999999988633
No 159
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=97.47 E-value=2e-05 Score=66.37 Aligned_cols=57 Identities=23% Similarity=0.590 Sum_probs=37.1
Q ss_pred cccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhccccccc
Q psy4925 58 EERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 115 (160)
Q Consensus 58 ~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai 115 (160)
..+|..||-|..+||.. +.+.+.-..........+..-.+.|++|+.|..+||.+..
T Consensus 399 a~kc~~cG~C~~~CP~~-l~i~eam~~A~~Gd~~~l~~l~d~C~~C~rCEq~Cpk~ip 455 (772)
T COG1152 399 ARKCTYCGNCMRACPNE-LDIPEAMEYAAKGDFSKLEDLHDVCIGCGRCEQVCPKNIP 455 (772)
T ss_pred HHhcccccchhccCCcc-cchHHHHHHhhcCChHHHHHHHHHhhhhhhhhhhCcccCc
Confidence 46899999999999975 3333211111111112333445689999999999999843
No 160
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=97.46 E-value=3e-05 Score=34.87 Aligned_cols=14 Identities=50% Similarity=1.452 Sum_probs=7.4
Q ss_pred cccchhhcHHhchh
Q psy4925 60 RCIACKLCEAICPA 73 (160)
Q Consensus 60 ~Ci~Cg~Cv~~CP~ 73 (160)
+|++|+.|+.+||+
T Consensus 3 ~C~~C~~C~~~Cp~ 16 (17)
T PF12800_consen 3 RCIGCGSCVDVCPT 16 (17)
T ss_dssp CCTTSSSSTTTSTT
T ss_pred cCCCCchHHhhccC
Confidence 45555555555553
No 161
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=97.46 E-value=4.3e-05 Score=44.94 Aligned_cols=20 Identities=45% Similarity=1.089 Sum_probs=15.1
Q ss_pred ccccccchhhcHHhchhccc
Q psy4925 57 GEERCIACKLCEAICPAQAI 76 (160)
Q Consensus 57 ~~~~Ci~Cg~Cv~~CP~~~i 76 (160)
+.++|++||.|+.+||++||
T Consensus 36 ~~~~C~~Cg~C~~~CP~~AI 55 (55)
T PF13187_consen 36 NAEKCIGCGACVKACPTGAI 55 (55)
T ss_dssp TGGG--TTCHHHHHSTTT-E
T ss_pred CCCccccHhHHHHHcchhhC
Confidence 45689999999999999986
No 162
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=97.45 E-value=2e-05 Score=47.41 Aligned_cols=23 Identities=43% Similarity=1.136 Sum_probs=16.1
Q ss_pred CccccccchhhcHHhchh-ccccc
Q psy4925 56 SGEERCIACKLCEAICPA-QAITI 78 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~-~~i~~ 78 (160)
++.+.|++||.|+.+||+ +||.+
T Consensus 36 v~~~~C~GCg~C~~~CPv~~AI~m 59 (59)
T PF14697_consen 36 VNPDKCIGCGLCVKVCPVKDAITM 59 (59)
T ss_dssp CE-TT--S-SCCCCCSSSTTSEEE
T ss_pred eccccCcCcCcccccCCCccCCCC
Confidence 456899999999999996 99864
No 163
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=97.45 E-value=4.3e-05 Score=61.20 Aligned_cols=21 Identities=33% Similarity=0.817 Sum_probs=17.4
Q ss_pred CccCCcCcccchhccccccccc
Q psy4925 96 DMTKCIYCGFCQEACPVDAIVE 117 (160)
Q Consensus 96 ~~~~C~~Cg~C~~~CP~~ai~~ 117 (160)
....|++||.|+++||.+ |.+
T Consensus 299 G~~~CvgCGrC~~~CP~~-idi 319 (334)
T TIGR02910 299 GYHMCVGCGRCDDICPEY-ISF 319 (334)
T ss_pred CccccCCcCchhhhCCCC-CCH
Confidence 455799999999999999 444
No 164
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=97.42 E-value=5.9e-05 Score=61.96 Aligned_cols=44 Identities=27% Similarity=0.597 Sum_probs=36.2
Q ss_pred hhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccC
Q psy4925 65 KLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 118 (160)
Q Consensus 65 g~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~ 118 (160)
..|+.+||++|+.++... ...++...|+.|+.|+.+||. |+...
T Consensus 248 ~~~v~~Cp~~ai~~~~~~---------~~~id~~~C~~Cm~Ci~~~p~-a~~~g 291 (402)
T TIGR02064 248 NEVVNRCPTKAISWDGSK---------ELSIDNRECVRCMHCINKMPK-ALHPG 291 (402)
T ss_pred hhHhhcCCccccccCCCc---------eEEEcchhcCcCccccccCcc-cccCC
Confidence 359999999999886421 467899999999999999997 66655
No 165
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=97.40 E-value=5.1e-05 Score=55.31 Aligned_cols=33 Identities=33% Similarity=0.682 Sum_probs=26.9
Q ss_pred ccccCCCccccccchhhcHHhchhccccchhhh
Q psy4925 50 ALRRYPSGEERCIACKLCEAICPAQAITIEAEE 82 (160)
Q Consensus 50 ~~~~~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~ 82 (160)
....+.+|..+||-||.|+.+||++||.+....
T Consensus 86 ~~~~~~In~grCIfCg~C~e~CPt~Al~~t~~~ 118 (172)
T COG1143 86 KPKRPDINLGRCIFCGLCVEVCPTGALVLTPEF 118 (172)
T ss_pred ccccceeccccccccCchhhhCchhhhcCCcce
Confidence 344556788999999999999999999876543
No 166
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=97.35 E-value=2.3e-05 Score=48.00 Aligned_cols=61 Identities=25% Similarity=0.417 Sum_probs=32.8
Q ss_pred CccccccchhhcHHhchhccccchhhhhcCCCcccc--ccccCccCCcCcccchhccccccccc
Q psy4925 56 SGEERCIACKLCEAICPAQAITIEAEERADGSRRTT--RYDIDMTKCIYCGFCQEACPVDAIVE 117 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~--~~~~~~~~C~~Cg~C~~~CP~~ai~~ 117 (160)
+|.++|++||.|+..||. ...++..+......... ........=..-...++.||++||+.
T Consensus 3 vD~~~C~gcg~C~~~aP~-vF~~d~~g~a~~~~~~~~~~~~v~~~~~~~~~~Aa~~CP~~aI~v 65 (65)
T PF13459_consen 3 VDRDRCIGCGLCVELAPE-VFELDDDGKAVVLVDGGEGEGEVPEEDEEDVREAAEACPVGAIHV 65 (65)
T ss_pred EecccCcCccHHHhhCCc-cEEECCCCCEEEEecCcccccCCCchhHHHHHHHHHhCCHhhEEC
Confidence 567899999999999994 24443332110000000 00011111112356799999999863
No 167
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=97.29 E-value=0.00012 Score=32.83 Aligned_cols=16 Identities=44% Similarity=1.294 Sum_probs=13.7
Q ss_pred cCCcCcccchhccccc
Q psy4925 98 TKCIYCGFCQEACPVD 113 (160)
Q Consensus 98 ~~C~~Cg~C~~~CP~~ 113 (160)
..|++|+.|+.+||++
T Consensus 2 ~~C~~C~~C~~~Cp~~ 17 (17)
T PF12800_consen 2 ERCIGCGSCVDVCPTQ 17 (17)
T ss_dssp CCCTTSSSSTTTSTT-
T ss_pred CcCCCCchHHhhccCC
Confidence 4699999999999974
No 168
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=97.20 E-value=0.00011 Score=59.19 Aligned_cols=54 Identities=30% Similarity=0.508 Sum_probs=44.4
Q ss_pred ccccchh--hcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCc
Q psy4925 59 ERCIACK--LCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 59 ~~Ci~Cg--~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
--|.+|- .||.+||.||+-..+... .+.+|.+.|.+...|+..||++.+.+...
T Consensus 181 RiCeHCLNPsCvasCPsgaiYKReEDG--------IVLiDQd~CRGwR~CvsgCPYKKvYfNwk 236 (513)
T COG1140 181 RLCEHCLNPSCVASCPSGAIYKREEDG--------IVLIDQDKCRGWRMCVSGCPYKKVYFNWK 236 (513)
T ss_pred HHHhhcCCcHHhhcCCcccccccccCc--------eEEeecccccchhhhhcCCCcceeEeecc
Confidence 3588885 899999999997654432 56789999999999999999999887665
No 169
>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion]
Probab=97.18 E-value=3.9e-05 Score=62.34 Aligned_cols=55 Identities=25% Similarity=0.708 Sum_probs=36.0
Q ss_pred cccccchhhcHHhchhccccchhhhhcCCCcc------------ccccccCccCCcCcccchhcccccc
Q psy4925 58 EERCIACKLCEAICPAQAITIEAEERADGSRR------------TTRYDIDMTKCIYCGFCQEACPVDA 114 (160)
Q Consensus 58 ~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~------------~~~~~~~~~~C~~Cg~C~~~CP~~a 114 (160)
...|++||.|..+||+-... ....+.+... ........+.|+.|+.|+.+||.+.
T Consensus 8 ~~~Cv~Cg~C~~~CP~~~~~--~~~sPrgr~~~~r~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~i 74 (388)
T COG0247 8 LDKCVHCGFCTNVCPSYRAT--EALSPRGRIVLVREVLRGKAPGDEEVYEALDTCLACGACATACPSGI 74 (388)
T ss_pred HHhcCCCCcccCcCCCcccc--CCCCCchHHHHHHHHHhCCCcchhhhHHHHHhCcCccchHhhCCCCC
Confidence 46799999999999975443 1111111100 1112234468999999999999985
No 170
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=97.15 E-value=0.00013 Score=53.68 Aligned_cols=26 Identities=38% Similarity=0.827 Sum_probs=22.3
Q ss_pred CCccccccchhhcHHhchhccccchh
Q psy4925 55 PSGEERCIACKLCEAICPAQAITIEA 80 (160)
Q Consensus 55 ~~~~~~Ci~Cg~Cv~~CP~~~i~~~~ 80 (160)
.++...|+.||.|+.+||++||.+..
T Consensus 69 ~~~~~~C~~Cg~C~~~CPt~AI~~~~ 94 (181)
T PRK08222 69 QLYLGRCIYCGRCEEVCPTRAIQLTN 94 (181)
T ss_pred eeccCcCcCCCCcccccCcCeEEecc
Confidence 34567899999999999999998764
No 171
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=97.13 E-value=0.00013 Score=56.98 Aligned_cols=49 Identities=24% Similarity=0.485 Sum_probs=34.5
Q ss_pred chhhcHHhchhccccchhhhhcCCCccccccc-cCccCCcCcccchhcccccccc
Q psy4925 63 ACKLCEAICPAQAITIEAEERADGSRRTTRYD-IDMTKCIYCGFCQEACPVDAIV 116 (160)
Q Consensus 63 ~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~-~~~~~C~~Cg~C~~~CP~~ai~ 116 (160)
..+-|...||.|++..... +....+.. .+.+.|+.|+.|+++||.+++.
T Consensus 177 ~r~wC~~lCP~Ga~~~~~~-----~~~~~~i~~~d~~~C~~C~~C~~~CP~~~i~ 226 (271)
T PRK09477 177 EHGWCGHLCPLGAFYGLIG-----KKSLIRVKAHDRQKCTRCMDCFHVCPEPQVL 226 (271)
T ss_pred CCchhhccCCHHHHHHhcc-----cccccccccCCcccCcccCCcCCcCCCccee
Confidence 4567899999998753221 11111334 7788999999999999998653
No 172
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=97.13 E-value=0.00012 Score=53.87 Aligned_cols=52 Identities=23% Similarity=0.508 Sum_probs=39.4
Q ss_pred ccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCC
Q psy4925 61 CIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 119 (160)
Q Consensus 61 Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 119 (160)
....|.+...+|...+......+ ....++...|+.|+.|+.+||++||.+..
T Consensus 8 ~~~~g~~T~~yP~~~~~~~~~~r-------g~p~~d~~~C~~C~~Cv~~CP~~ai~~~~ 59 (180)
T PRK12387 8 VIKTGTATSSYPLEPIAVDKNFR-------GKPEYNPQQCIGCAACVNACPSNALTVET 59 (180)
T ss_pred HHhcCCccccCCCCCCCCCCCCC-------CceEEChhhCcChhHHHHhcCccCeEeec
Confidence 44568888899987766544322 14567889999999999999999988653
No 173
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=97.11 E-value=0.00014 Score=44.50 Aligned_cols=21 Identities=52% Similarity=1.092 Sum_probs=19.1
Q ss_pred CcCcccchhcccccccccCCc
Q psy4925 100 CIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 100 C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
|..|+.|+++||++||.....
T Consensus 2 C~~C~~C~~~CP~~AI~~~~~ 22 (67)
T PF13484_consen 2 CITCGKCAEACPTGAISGEDE 22 (67)
T ss_pred CcchhHHHHhCcHhhccCCCc
Confidence 899999999999999998733
No 174
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=97.10 E-value=7.8e-05 Score=45.99 Aligned_cols=61 Identities=25% Similarity=0.331 Sum_probs=33.9
Q ss_pred CccccccchhhcHHhchhccccchhhhhcCC-CccccccccCccCCcCcccchhccccccccc
Q psy4925 56 SGEERCIACKLCEAICPAQAITIEAEERADG-SRRTTRYDIDMTKCIYCGFCQEACPVDAIVE 117 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~-~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~ 117 (160)
+|.++||+||.|..+||.- ...++.+.... ........+..+.=...-..+..||++||+.
T Consensus 5 vDrd~Cigcg~C~~~aPdv-F~~~d~G~a~~~~~~~~~~~~~~e~~~~~~~A~~~CP~~aI~v 66 (68)
T COG1141 5 VDRDTCIGCGACLAVAPDV-FDYDDEGIAFVLDGNIGEGEVPEELEEDAEDAAEACPTDAIKV 66 (68)
T ss_pred echhhccccchhhhcCCcc-eeeCCCcceEeccCccccccCChHHHHHHHHHHHhCCccceEe
Confidence 5678999999999999952 44443332200 0000001111111011256889999999986
No 175
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=97.09 E-value=0.00022 Score=57.37 Aligned_cols=52 Identities=35% Similarity=0.773 Sum_probs=32.7
Q ss_pred cccchhhcHHhchhccccchhhhh------c---------------CCCccccccccCccCCcCcccchhccccc
Q psy4925 60 RCIACKLCEAICPAQAITIEAEER------A---------------DGSRRTTRYDIDMTKCIYCGFCQEACPVD 113 (160)
Q Consensus 60 ~Ci~Cg~Cv~~CP~~~i~~~~~~~------~---------------~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ 113 (160)
.|+.|+.|+. ||.+ |.+..... . .+..+.+...-+...|++||+|.+.||.+
T Consensus 294 ~Ct~C~yC~P-CP~g-InIP~~f~lyN~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~g~as~CieCgqCl~~CPq~ 366 (391)
T COG1453 294 PCTGCRYCLP-CPSG-INIPEIFRLYNLAVAFDDVDYAKFRYNMLENGGHWFPGPKGKASDCIECGQCLEKCPQH 366 (391)
T ss_pred CCccccccCc-CCCC-CChHHHHHHHHHHHhhccchhhHHHHHHHhccCccCCCCcccccccchhhhhhhcCCCc
Confidence 4999999998 9976 33321110 0 00011111223467899999999999998
No 176
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=97.05 E-value=0.00025 Score=57.66 Aligned_cols=83 Identities=19% Similarity=0.419 Sum_probs=46.3
Q ss_pred cccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCcccccccchhhhhccHHH
Q psy4925 58 EERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTESHEELLYNKEK 137 (160)
Q Consensus 58 ~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~ 137 (160)
.+.|..|..|...||.- ..+.+.. +.....+..-.+.|..||.|...||+ +.. .++....+..+...+..
T Consensus 32 ~~iC~~Cr~C~~~Cpvf-P~l~~r~----~~~~~d~~~~a~~C~~Cg~C~~~CP~-apP----hef~i~ip~~l~~~r~~ 101 (389)
T PRK15033 32 MQICNACRYCEGFCAVF-PAMTRRL----EFGKADIHYLANLCHNCGACLHACQY-APP----HEFAVNVPKAMAQVRLE 101 (389)
T ss_pred hHhCCCCCCccccCCCc-hhhhhhh----cCChhhhHHHHHhCcCcccccccCcC-CCC----cccCCCHHHHHHHHHHH
Confidence 46899999999999963 2211110 00111122334589999999999999 322 23333444444444433
Q ss_pred HhccCCcchHHHhh
Q psy4925 138 LLSNGDKWESEIAS 151 (160)
Q Consensus 138 ~~~~~~~~~~~~~~ 151 (160)
+.. ...|..-..+
T Consensus 102 sy~-~yawP~~lgk 114 (389)
T PRK15033 102 TYQ-EYAWPAALGA 114 (389)
T ss_pred HHH-HccCcHHHHH
Confidence 333 4555554444
No 177
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=97.02 E-value=0.00021 Score=41.55 Aligned_cols=21 Identities=29% Similarity=0.885 Sum_probs=13.9
Q ss_pred CCccccccchhhcHHhchhcc
Q psy4925 55 PSGEERCIACKLCEAICPAQA 75 (160)
Q Consensus 55 ~~~~~~Ci~Cg~Cv~~CP~~~ 75 (160)
.++.++|++|+.|+.+||++|
T Consensus 32 ~~~~~~C~~C~~C~~~CP~~A 52 (52)
T PF12838_consen 32 VIDPDKCTGCGACVEVCPTGA 52 (52)
T ss_dssp EETGGG----SHHHHHTTTS-
T ss_pred EEechhCcCcChhhhhCcCcC
Confidence 456889999999999999985
No 178
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=97.01 E-value=0.00021 Score=57.81 Aligned_cols=54 Identities=17% Similarity=0.361 Sum_probs=35.3
Q ss_pred cccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccc
Q psy4925 58 EERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 116 (160)
Q Consensus 58 ~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~ 116 (160)
.+.|..|+.|..+||.- ..... . .+.....+..-.+.|..|+.|..+||+.+.+
T Consensus 13 l~iC~~C~~C~~~Cpvf-Pa~~~--~--~~~~~~d~~~la~lChnC~~C~~~CPy~pPH 66 (372)
T TIGR02484 13 LNLCNSCGYCTGLCAVF-PAAQG--R--PDLTRGDLRHLAHLCHDCQSCWHDCQYAPPH 66 (372)
T ss_pred hHhCcCcCCccccCCCc-ccccc--c--cccCHHHHHHHHHHCcCcccccccCcCCCCc
Confidence 46799999999999963 11110 0 0000111223456799999999999998864
No 179
>KOG3256|consensus
Probab=97.00 E-value=0.00026 Score=50.79 Aligned_cols=37 Identities=32% Similarity=0.717 Sum_probs=29.1
Q ss_pred CccCccccccCCCccccccchhhcHHhchhccccchh
Q psy4925 44 RFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEA 80 (160)
Q Consensus 44 ~~~~~~~~~~~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~ 80 (160)
+..+.....++.+|..+||-||-|+.+||+++|+...
T Consensus 135 r~dgsrRttrYdIDmtkCIyCG~CqEaCPvdaivegp 171 (212)
T KOG3256|consen 135 RTDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 171 (212)
T ss_pred cCCccccceeecccceeeeeecchhhhCCccceeccC
Confidence 3334445566778999999999999999999998654
No 180
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=96.99 E-value=0.00024 Score=55.09 Aligned_cols=49 Identities=22% Similarity=0.455 Sum_probs=33.8
Q ss_pred cchhhcHHhchhccccchhhhhcCCCcccccccc-CccCCcCcccchhccccccc
Q psy4925 62 IACKLCEAICPAQAITIEAEERADGSRRTTRYDI-DMTKCIYCGFCQEACPVDAI 115 (160)
Q Consensus 62 i~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~-~~~~C~~Cg~C~~~CP~~ai 115 (160)
+..+-|...||.|++...... ....+... +.++|+.|+.|+++||.+++
T Consensus 169 ~~r~~C~~~CP~Ga~~~~~~~-----~~~~~i~~~~~~~C~~C~~C~~vCP~~~v 218 (255)
T TIGR02163 169 SERGWCGHLCPLGAFYGLIGR-----KSLIKIAASDREKCTNCMDCFNVCPEPQV 218 (255)
T ss_pred cCCchhhCcCCCcchhhhhhc-----cCceEEEeeccccCeEcCCccCcCCCCce
Confidence 456778899999988533211 11112333 47899999999999999864
No 181
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=96.87 E-value=0.00037 Score=45.21 Aligned_cols=23 Identities=30% Similarity=0.852 Sum_probs=20.5
Q ss_pred CccccccchhhcHHhchhccccc
Q psy4925 56 SGEERCIACKLCEAICPAQAITI 78 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~ 78 (160)
++...|++||.|+.+||++||.+
T Consensus 67 i~~~~C~~Cg~C~~~CP~~AI~~ 89 (91)
T TIGR02936 67 ANPGNCIGCGACARVCPKKCQTH 89 (91)
T ss_pred cCCccCcChhhhhhhCCHhHEec
Confidence 56789999999999999999864
No 182
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=96.83 E-value=0.00044 Score=42.86 Aligned_cols=18 Identities=44% Similarity=1.202 Sum_probs=16.0
Q ss_pred ccccccchhhcHHhchhc
Q psy4925 57 GEERCIACKLCEAICPAQ 74 (160)
Q Consensus 57 ~~~~Ci~Cg~Cv~~CP~~ 74 (160)
....|++||+|+.+||++
T Consensus 48 ~~~~CVgCgrCv~~CP~~ 65 (69)
T PF13746_consen 48 GEGDCVGCGRCVRVCPAG 65 (69)
T ss_pred CCccCCCcChHhhhcCCC
Confidence 466899999999999987
No 183
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=96.75 E-value=0.0005 Score=57.09 Aligned_cols=54 Identities=24% Similarity=0.588 Sum_probs=32.1
Q ss_pred ccchhhcHHhchhccccc---hhhhh------cCCCccccc-----c--ccCccCCcCcccchhcccccc
Q psy4925 61 CIACKLCEAICPAQAITI---EAEER------ADGSRRTTR-----Y--DIDMTKCIYCGFCQEACPVDA 114 (160)
Q Consensus 61 Ci~Cg~Cv~~CP~~~i~~---~~~~~------~~~~~~~~~-----~--~~~~~~C~~Cg~C~~~CP~~a 114 (160)
...+.-|..+||.+++.- +.+.. ..++.+... . ..+...|+.|+.|+++||++.
T Consensus 178 ~~re~~C~~~CP~g~~qs~m~d~~tl~v~yd~~Rgepr~~~~~~~~~~~~~~~~~Ci~C~~Cv~vCP~gi 247 (434)
T TIGR02745 178 WMREQFCIYMCPYARIQSVMFDKDTLIVVYDEKRGEPRGPRKGKKDPKAPGPLGDCIDCNLCVQVCPTGI 247 (434)
T ss_pred eeccchhhhhCCHHHHHHHhccCCcceEecccccCCcCccccccccccCCCCCCCCCChhhhHHhCCCCC
Confidence 456779999999987752 21110 001100000 0 011468999999999999993
No 184
>COG1146 Ferredoxin [Energy production and conversion]
Probab=96.75 E-value=0.00041 Score=42.73 Aligned_cols=26 Identities=42% Similarity=0.951 Sum_probs=22.2
Q ss_pred CCccccccchhhcHHhchhccccchh
Q psy4925 55 PSGEERCIACKLCEAICPAQAITIEA 80 (160)
Q Consensus 55 ~~~~~~Ci~Cg~Cv~~CP~~~i~~~~ 80 (160)
..+.+.|++|+.|+.+||++||.+..
T Consensus 37 ~~~~e~C~~C~~C~~~CP~~aI~~~~ 62 (68)
T COG1146 37 VARPEECIDCGLCELACPVGAIKVDI 62 (68)
T ss_pred EeccccCccchhhhhhCCcceEEEec
Confidence 35678899999999999999987654
No 185
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=96.72 E-value=0.0004 Score=44.86 Aligned_cols=25 Identities=28% Similarity=0.812 Sum_probs=21.5
Q ss_pred CccccccchhhcHHhchhccccchh
Q psy4925 56 SGEERCIACKLCEAICPAQAITIEA 80 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~~~ 80 (160)
+|-+.|.+||.|+.+||+.||.+..
T Consensus 63 idYdyCKGCGICa~vCP~kaI~Mv~ 87 (91)
T COG1144 63 IDYDYCKGCGICANVCPVKAIEMVR 87 (91)
T ss_pred eEcccccCceechhhCChhheEeEe
Confidence 4567899999999999999998754
No 186
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=96.71 E-value=0.00075 Score=41.83 Aligned_cols=19 Identities=32% Similarity=0.913 Sum_probs=16.9
Q ss_pred cCccCCcCcccchhccccc
Q psy4925 95 IDMTKCIYCGFCQEACPVD 113 (160)
Q Consensus 95 ~~~~~C~~Cg~C~~~CP~~ 113 (160)
.....|++||.|+.+||++
T Consensus 47 ~~~~~CVgCgrCv~~CP~~ 65 (69)
T PF13746_consen 47 YGEGDCVGCGRCVRVCPAG 65 (69)
T ss_pred cCCccCCCcChHhhhcCCC
Confidence 4567899999999999998
No 187
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=96.69 E-value=0.00055 Score=44.65 Aligned_cols=24 Identities=50% Similarity=0.999 Sum_probs=21.8
Q ss_pred ccCccCCcCcccchhccccccccc
Q psy4925 94 DIDMTKCIYCGFCQEACPVDAIVE 117 (160)
Q Consensus 94 ~~~~~~C~~Cg~C~~~CP~~ai~~ 117 (160)
..+...|++||.|+.+||++||.+
T Consensus 25 ~~~~~~Ci~Cg~C~~~CP~~ai~~ 48 (99)
T COG1145 25 VIDAEKCIGCGLCVKVCPTGAIEL 48 (99)
T ss_pred EeCccccCCCCCchhhCCHHHhhc
Confidence 467778999999999999999998
No 188
>CHL00065 psaC photosystem I subunit VII
Probab=96.47 E-value=0.0012 Score=41.97 Aligned_cols=25 Identities=32% Similarity=0.915 Sum_probs=21.4
Q ss_pred ccccccchhhcHHhchhccccchhh
Q psy4925 57 GEERCIACKLCEAICPAQAITIEAE 81 (160)
Q Consensus 57 ~~~~Ci~Cg~Cv~~CP~~~i~~~~~ 81 (160)
+.+.|+.|+.|+.+||++||.+...
T Consensus 44 ~~~~C~~C~~C~~~CP~~Ai~~~~~ 68 (81)
T CHL00065 44 RTEDCVGCKRCESACPTDFLSVRVY 68 (81)
T ss_pred CCCcCCChhhhhhhcCccccEEEEE
Confidence 4578999999999999999987644
No 189
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=96.40 E-value=0.0012 Score=43.99 Aligned_cols=28 Identities=21% Similarity=0.591 Sum_probs=23.8
Q ss_pred ccccCccCCcCcccchhcccccccccCC
Q psy4925 92 RYDIDMTKCIYCGFCQEACPVDAIVEGP 119 (160)
Q Consensus 92 ~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 119 (160)
.+.++...|++|+.|+.+||.++|.+..
T Consensus 10 ~v~id~~~Ci~C~~Cv~aCP~~ai~~~~ 37 (103)
T PRK09626 10 PVWVDESRCKACDICVSVCPAGVLAMRI 37 (103)
T ss_pred CeEECcccccCCcchhhhcChhhhcccc
Confidence 4556888999999999999999987654
No 190
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=96.39 E-value=0.0015 Score=44.77 Aligned_cols=28 Identities=32% Similarity=0.759 Sum_probs=23.8
Q ss_pred ccccCccCCcCcccchhcccccccccCC
Q psy4925 92 RYDIDMTKCIYCGFCQEACPVDAIVEGP 119 (160)
Q Consensus 92 ~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 119 (160)
.+.++.+.|++|+.|+.+||.+|+.+..
T Consensus 36 ~i~i~~~~Ci~C~~C~~~CP~~ai~~~~ 63 (120)
T PRK08348 36 KILYDVDKCVGCRMCVTVCPAGVFVYLP 63 (120)
T ss_pred eEEECcccCcCcccHHHHCCccceEccc
Confidence 4567888999999999999999987653
No 191
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=96.38 E-value=0.0012 Score=48.64 Aligned_cols=27 Identities=26% Similarity=0.703 Sum_probs=23.1
Q ss_pred CCCccccccchhhcHHhchhccccchh
Q psy4925 54 YPSGEERCIACKLCEAICPAQAITIEA 80 (160)
Q Consensus 54 ~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~ 80 (160)
+.++...|+.||.|+.+||++|+.+..
T Consensus 97 ~~id~~~Ci~Cg~Cv~aCP~~AI~~~~ 123 (183)
T TIGR00403 97 YSIDFGVCIFCGNCVEYCPTNCLSMTE 123 (183)
T ss_pred eecCcccccCcCchhhhcCCCCeeccc
Confidence 346678899999999999999998754
No 192
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=96.37 E-value=0.0019 Score=43.32 Aligned_cols=51 Identities=27% Similarity=0.426 Sum_probs=32.4
Q ss_pred HHhchhccccchhhhh-cCCCccccccccCccCCcCcccchhcccccccccC
Q psy4925 68 EAICPAQAITIEAEER-ADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 118 (160)
Q Consensus 68 v~~CP~~~i~~~~~~~-~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~ 118 (160)
+..+|...+.+..... ..+........++...|+.|+.|+.+||.+++...
T Consensus 20 ~~~~p~~~~~~g~~~~n~e~~~~~~~p~i~~~~Ci~C~~C~~~CP~~ai~~~ 71 (105)
T PRK09623 20 VDEYPEAPISLGTTLSNFTGDWRTFMPVVDESKCVKCYICWKFCPEPAIYIK 71 (105)
T ss_pred hhcCCCccccccccccCccccccceeEEECcccCccccchhhhCCHhheEec
Confidence 3447876665543211 11111222445788899999999999999998653
No 193
>PLN00071 photosystem I subunit VII; Provisional
Probab=96.35 E-value=0.0015 Score=41.56 Aligned_cols=25 Identities=32% Similarity=0.915 Sum_probs=21.4
Q ss_pred ccccccchhhcHHhchhccccchhh
Q psy4925 57 GEERCIACKLCEAICPAQAITIEAE 81 (160)
Q Consensus 57 ~~~~Ci~Cg~Cv~~CP~~~i~~~~~ 81 (160)
+.+.|++|+.|+.+||+++|.+...
T Consensus 44 ~~~~C~~Cg~C~~~CP~~Ai~~~~~ 68 (81)
T PLN00071 44 RTEDCVGCKRCESACPTDFLSVRVY 68 (81)
T ss_pred CCCcCcChhhHHhhcCCccceEeee
Confidence 4578999999999999999987543
No 194
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=96.32 E-value=0.0012 Score=60.66 Aligned_cols=53 Identities=25% Similarity=0.394 Sum_probs=38.6
Q ss_pred cCCCccccccchhhcHH--hchhccccchhhhhcCCCccccccccCccCCcCcccchh-ccccc
Q psy4925 53 RYPSGEERCIACKLCEA--ICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQE-ACPVD 113 (160)
Q Consensus 53 ~~~~~~~~Ci~Cg~Cv~--~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~-~CP~~ 113 (160)
++.++.+.|++||.|.. -||. +...+.. .++ +..+|...|..|+.|++ .||.=
T Consensus 623 ~~~In~~vCegCg~C~~~s~C~a--i~~~~t~--~gr----K~~Id~s~Cn~~~~C~~G~CPsf 678 (1159)
T PRK13030 623 RLFINEAVCEGCGDCGVQSNCLS--VEPVETP--FGR----KRRIDQSSCNKDFSCVNGFCPSF 678 (1159)
T ss_pred eEEEcccccCCchhhhhccCCcc--eeecccc--CCc----cEEECHHHCCCccccccCCCCCC
Confidence 45578899999999987 4985 3222210 111 45789999999999999 99965
No 195
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=96.20 E-value=0.002 Score=46.79 Aligned_cols=27 Identities=26% Similarity=0.703 Sum_probs=22.8
Q ss_pred CCCccccccchhhcHHhchhccccchh
Q psy4925 54 YPSGEERCIACKLCEAICPAQAITIEA 80 (160)
Q Consensus 54 ~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~ 80 (160)
+.++...|+.|+.|+.+||.+|+.+..
T Consensus 94 ~~id~~~C~~Cg~C~~~CP~~AI~~~~ 120 (167)
T CHL00014 94 YSIDFGVCIFCGNCVEYCPTNCLSMTE 120 (167)
T ss_pred ccCCCCcCcCccchHhhcCcCceecCC
Confidence 445668899999999999999998754
No 196
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=96.17 E-value=0.002 Score=37.24 Aligned_cols=20 Identities=50% Similarity=1.052 Sum_probs=8.6
Q ss_pred cccCccCCcCcccchhcccc
Q psy4925 93 YDIDMTKCIYCGFCQEACPV 112 (160)
Q Consensus 93 ~~~~~~~C~~Cg~C~~~CP~ 112 (160)
+.+|.+.|++||.|+.+||.
T Consensus 2 i~id~~~C~~C~~C~~~CP~ 21 (52)
T PF13237_consen 2 IVIDEDKCIGCGRCVKVCPA 21 (52)
T ss_dssp ----TT------TTGGG-TT
T ss_pred CccCcccCcCCcChHHHccc
Confidence 35788899999999999999
No 197
>COG1035 FrhB Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]
Probab=96.15 E-value=0.0019 Score=51.68 Aligned_cols=46 Identities=33% Similarity=0.586 Sum_probs=32.8
Q ss_pred ccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccc
Q psy4925 57 GEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPV 112 (160)
Q Consensus 57 ~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~ 112 (160)
+..-|.+||.|+.+||. ++...+... .....-.+.+|+.|..+||.
T Consensus 3 ~~~~c~~Cg~C~a~cp~-~i~~~~~~~---------~~~~~c~~~~~~~~~~~cp~ 48 (332)
T COG1035 3 DAGLCTGCGTCAAVCPY-AITERDEAP---------LLIEECMDNGHGTCLKVCPE 48 (332)
T ss_pred cCcccccchhhHhhCCc-eEEEecccc---------hhhhhhhcccchHHhhhCcc
Confidence 45679999999999999 776554321 12333345577899999993
No 198
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=96.14 E-value=0.0026 Score=40.35 Aligned_cols=25 Identities=32% Similarity=0.957 Sum_probs=21.2
Q ss_pred CccccccchhhcHHhchhccccchh
Q psy4925 56 SGEERCIACKLCEAICPAQAITIEA 80 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~~~ 80 (160)
.+.+.|+.|+.|+.+||++++.+..
T Consensus 42 ~~~~~C~~Cg~C~~~CP~~ai~~~~ 66 (80)
T TIGR03048 42 PRTEDCVGCKRCESACPTDFLSVRV 66 (80)
T ss_pred CCCCcCcChhHHHHhcCcccCEEEE
Confidence 3457899999999999999998654
No 199
>COG0348 NapH Polyferredoxin [Energy production and conversion]
Probab=96.14 E-value=0.0017 Score=53.28 Aligned_cols=82 Identities=23% Similarity=0.417 Sum_probs=44.9
Q ss_pred CCCcccCCCccCCCCCCccCccccccCCCcccccc-chhhcHHhchhccc---cchhhhhcCCCccccccccCcc-CCcC
Q psy4925 28 EPATINYPFEKGPLSPRFRGEHALRRYPSGEERCI-ACKLCEAICPAQAI---TIEAEERADGSRRTTRYDIDMT-KCIY 102 (160)
Q Consensus 28 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~Ci-~Cg~Cv~~CP~~~i---~~~~~~~~~~~~~~~~~~~~~~-~C~~ 102 (160)
++.+..|-.+.+..-... .......+..+...|. .|..|.+.||.+.. .+... ....... .|+.
T Consensus 181 rr~~C~ylCP~g~~~~v~-~~~~~~~v~~~~~~~~~r~~~c~k~cp~~~~~~v~v~p~----------~~~~~~~~~CI~ 249 (386)
T COG0348 181 RRFWCRYLCPYGAFQGVL-FDKSLLKVNYDDKRGCPRCKRCKKVCPEPIPLWVQVCPA----------GIDIRDGLECIG 249 (386)
T ss_pred ccceeEEeCCHHHHHHHH-cccceEEEecccccCCcccccccccCCccccceeEeccc----------cccccccccccc
Confidence 456666654443221111 1222223333444444 68999999997642 11111 1111222 5999
Q ss_pred cccchhcccccccccCCc
Q psy4925 103 CGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 103 Cg~C~~~CP~~ai~~~~~ 120 (160)
|+.|+++|+.....+...
T Consensus 250 C~~CidaCd~~~~~~~~~ 267 (386)
T COG0348 250 CGRCIDACDDDMLKFNLP 267 (386)
T ss_pred HhhHhhhCCHHhheeccc
Confidence 999999999887776544
No 200
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=96.09 E-value=0.0018 Score=59.42 Aligned_cols=53 Identities=23% Similarity=0.322 Sum_probs=38.8
Q ss_pred cCCCccccccchhhcHH--hchhccccchhhhhcCCCccccccccCccCCcCcccchh-ccccc
Q psy4925 53 RYPSGEERCIACKLCEA--ICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQE-ACPVD 113 (160)
Q Consensus 53 ~~~~~~~~Ci~Cg~Cv~--~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~-~CP~~ 113 (160)
++.++.+.|.+||.|.. .||.-.....+.+ + +..+|...|..|+.|+. .||.=
T Consensus 637 r~~In~~vCegCgdC~~~s~C~ai~p~~t~~g----r----K~~Idqs~Cn~d~sC~~G~CPsF 692 (1165)
T PRK09193 637 RVFINEAVCEGCGDCSVKSNCLSVEPVETEFG----R----KRRIDQSSCNKDFSCLKGFCPSF 692 (1165)
T ss_pred eEEEcccccCCchhhhhccCCcceeeccccCC----c----cEEECHhHCCCccccccCCCCCc
Confidence 45578999999999987 4996322111111 1 45689999999999999 99975
No 201
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=96.01 E-value=0.0023 Score=44.72 Aligned_cols=25 Identities=28% Similarity=0.688 Sum_probs=22.0
Q ss_pred CccccccchhhcHHhchhccccchh
Q psy4925 56 SGEERCIACKLCEAICPAQAITIEA 80 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~~~ 80 (160)
++.+.|++|+.|+.+||.+||.+..
T Consensus 42 id~~~C~~Cg~Cv~~CP~~AI~~~~ 66 (132)
T TIGR02060 42 IEPDMCWECYSCVKACPQGAIDVRG 66 (132)
T ss_pred cCchhCccHHHHHHhCCcCceEEEC
Confidence 5678899999999999999998754
No 202
>PRK06273 ferredoxin; Provisional
Probab=96.01 E-value=0.0021 Score=46.65 Aligned_cols=27 Identities=37% Similarity=0.675 Sum_probs=23.3
Q ss_pred cccCccCCcCcccchhcccccccccCC
Q psy4925 93 YDIDMTKCIYCGFCQEACPVDAIVEGP 119 (160)
Q Consensus 93 ~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 119 (160)
..++...|++|+.|+.+||.+||.+..
T Consensus 44 ~~id~~~CigCg~C~~aCP~~AI~~~~ 70 (165)
T PRK06273 44 KKVFEELCIGCGGCANVCPTKAIEMIP 70 (165)
T ss_pred CeECchhCcChhHHHHhcCccceeeec
Confidence 356788899999999999999998754
No 203
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=96.01 E-value=0.0021 Score=59.06 Aligned_cols=53 Identities=23% Similarity=0.301 Sum_probs=38.2
Q ss_pred cCCCccccccchhhcHH--hchhccccchhhhhcCCCccccccccCccCCcCcccchh-ccccc
Q psy4925 53 RYPSGEERCIACKLCEA--ICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQE-ACPVD 113 (160)
Q Consensus 53 ~~~~~~~~Ci~Cg~Cv~--~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~-~CP~~ 113 (160)
++.++.+.|.+||.|.. .||.-.....+.+ + +..+|...|..|+.|++ .||.=
T Consensus 651 r~~In~~vCeGCgdC~~~snC~ai~p~et~~g----r----K~~Idqs~Cn~d~sC~~G~CPsF 706 (1186)
T PRK13029 651 RVFINELVCEGCGDCSVQSNCLAVQPVETEFG----R----KRKINQSSCNKDFSCVKGFCPSF 706 (1186)
T ss_pred cEEEcccccCCchhhhhccCCceeeeccccCC----c----cEEECHhHCCCccccccCCCCCc
Confidence 44578899999999987 4985322111111 1 45689999999999999 99973
No 204
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=95.97 E-value=0.0023 Score=42.96 Aligned_cols=24 Identities=29% Similarity=0.767 Sum_probs=20.9
Q ss_pred CccccccchhhcHHhchhccccch
Q psy4925 56 SGEERCIACKLCEAICPAQAITIE 79 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~~ 79 (160)
++.+.|++|+.|+.+||.+||.+.
T Consensus 78 id~~~C~~Cg~Cv~~CP~~AI~~~ 101 (105)
T PRK09624 78 FDYDYCKGCGICANECPTKAIEMV 101 (105)
T ss_pred ECchhCCCcCchhhhcCcCcEEEe
Confidence 466789999999999999998754
No 205
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=95.96 E-value=0.0028 Score=44.33 Aligned_cols=24 Identities=21% Similarity=0.724 Sum_probs=20.1
Q ss_pred CccccccchhhcHHhchhccccch
Q psy4925 56 SGEERCIACKLCEAICPAQAITIE 79 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~~ 79 (160)
++.+.|++||.|+.+||++++.+.
T Consensus 86 i~~~~C~~Cg~Cv~vCP~~a~~l~ 109 (133)
T PRK09625 86 VDYSHCKGCGVCVEVCPTNPKSLL 109 (133)
T ss_pred eCcCcCcChhHHHHHCCcCceEEE
Confidence 456789999999999999986543
No 206
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=95.94 E-value=0.0027 Score=55.42 Aligned_cols=20 Identities=20% Similarity=0.585 Sum_probs=15.2
Q ss_pred cCCCccccccchhhcHHhch
Q psy4925 53 RYPSGEERCIACKLCEAICP 72 (160)
Q Consensus 53 ~~~~~~~~Ci~Cg~Cv~~CP 72 (160)
.+..|.++||.||+|+++|.
T Consensus 610 ~i~~D~~kCI~CgrCv~~C~ 629 (652)
T PRK12814 610 DIRFEREKCVDCGICVRTLE 629 (652)
T ss_pred CeEeccccccCchHHHHHHH
Confidence 35567788888888888886
No 207
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=95.94 E-value=0.0027 Score=45.92 Aligned_cols=27 Identities=37% Similarity=0.802 Sum_probs=22.8
Q ss_pred CCccccccchhhcHHhchhccccchhh
Q psy4925 55 PSGEERCIACKLCEAICPAQAITIEAE 81 (160)
Q Consensus 55 ~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~ 81 (160)
.++...|+.|+.|+.+||+++|.+...
T Consensus 93 ~i~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 119 (164)
T PRK05888 93 DINFGRCIFCGFCEEACPTDAIVETPD 119 (164)
T ss_pred ecCCCcCcccCcchhhcCcCcceecCc
Confidence 356789999999999999999986543
No 208
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=95.91 E-value=0.003 Score=43.25 Aligned_cols=26 Identities=42% Similarity=0.901 Sum_probs=22.1
Q ss_pred CCccccccchhhcHHhchhccccchh
Q psy4925 55 PSGEERCIACKLCEAICPAQAITIEA 80 (160)
Q Consensus 55 ~~~~~~Ci~Cg~Cv~~CP~~~i~~~~ 80 (160)
.++...|+.|+.|+.+||++++.+..
T Consensus 78 ~~~~~~C~~Cg~Cv~~CP~~al~~~~ 103 (122)
T TIGR01971 78 QINFGRCIFCGLCEEACPTDAIVLTP 103 (122)
T ss_pred eECcccCCCCCchhhhCCCccccccc
Confidence 35678899999999999999987654
No 209
>PRK02651 photosystem I subunit VII; Provisional
Probab=95.82 E-value=0.0043 Score=39.32 Aligned_cols=25 Identities=36% Similarity=0.921 Sum_probs=21.2
Q ss_pred ccccccchhhcHHhchhccccchhh
Q psy4925 57 GEERCIACKLCEAICPAQAITIEAE 81 (160)
Q Consensus 57 ~~~~Ci~Cg~Cv~~CP~~~i~~~~~ 81 (160)
+...|+.|+.|+.+||.++|.+...
T Consensus 44 ~~~~C~~Cg~C~~~CP~~ai~~~~~ 68 (81)
T PRK02651 44 RTEDCVGCKRCETACPTDFLSIRVY 68 (81)
T ss_pred CCCcCCChhhhhhhcCCCceEEEEE
Confidence 4578999999999999999986543
No 210
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=95.76 E-value=0.0038 Score=46.34 Aligned_cols=25 Identities=32% Similarity=0.761 Sum_probs=21.7
Q ss_pred CccccccchhhcHHhchhccccchh
Q psy4925 56 SGEERCIACKLCEAICPAQAITIEA 80 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~~~ 80 (160)
.+.++|+.||.|+.+||+++|.+..
T Consensus 141 v~~~~C~~Cg~Cv~vCP~~AI~~~~ 165 (191)
T PRK05113 141 VISDLCTGCDLCVAPCPTDCIEMIP 165 (191)
T ss_pred ecCCcCCchHHHHHHcCcCceEEee
Confidence 4568899999999999999998754
No 211
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=95.73 E-value=0.0044 Score=38.91 Aligned_cols=28 Identities=39% Similarity=0.668 Sum_probs=23.4
Q ss_pred ccccCccCCcCcccchhcccccccccCC
Q psy4925 92 RYDIDMTKCIYCGFCQEACPVDAIVEGP 119 (160)
Q Consensus 92 ~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 119 (160)
...++.+.|+.|+.|+.+||.+++....
T Consensus 19 ~~~i~~~~C~~C~~C~~~Cp~~ai~~~~ 46 (78)
T TIGR02179 19 KPVVDKEKCIKCKNCWLYCPEGAIQEDE 46 (78)
T ss_pred EEEEcCCcCcChhHHHhhcCccceEecC
Confidence 3457788999999999999999987643
No 212
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=95.68 E-value=0.0061 Score=54.44 Aligned_cols=23 Identities=30% Similarity=0.712 Sum_probs=20.1
Q ss_pred cccccchhhcHHhchhccccchh
Q psy4925 58 EERCIACKLCEAICPAQAITIEA 80 (160)
Q Consensus 58 ~~~Ci~Cg~Cv~~CP~~~i~~~~ 80 (160)
...|+.||.|+.+||+||+....
T Consensus 203 ~~~C~~CG~Cv~VCPvGAL~~k~ 225 (819)
T PRK08493 203 TLDCSFCGECIAVCPVGALSSSD 225 (819)
T ss_pred cccccccCcHHHhCCCCccccCc
Confidence 46899999999999999997643
No 213
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=95.67 E-value=0.0034 Score=54.97 Aligned_cols=25 Identities=32% Similarity=0.946 Sum_probs=20.9
Q ss_pred CCccccccchhhcHHhchhccccch
Q psy4925 55 PSGEERCIACKLCEAICPAQAITIE 79 (160)
Q Consensus 55 ~~~~~~Ci~Cg~Cv~~CP~~~i~~~ 79 (160)
++..+.|+.||.||.|||.+|+...
T Consensus 188 ~i~~SSCVsCG~CvtVCP~nALmek 212 (978)
T COG3383 188 PINESSCVSCGACVTVCPVNALMEK 212 (978)
T ss_pred ccccccccccCccceecchhhhhhh
Confidence 3456799999999999999988644
No 214
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=95.64 E-value=0.0042 Score=45.03 Aligned_cols=24 Identities=29% Similarity=0.789 Sum_probs=20.8
Q ss_pred CccccccchhhcHHhchhccccch
Q psy4925 56 SGEERCIACKLCEAICPAQAITIE 79 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~~ 79 (160)
.+.++|+.||.|+.+||+++|.+.
T Consensus 140 i~~~~C~~Cg~Cv~~CP~~AI~~~ 163 (165)
T TIGR01944 140 VIADECTGCDLCVEPCPTDCIEMI 163 (165)
T ss_pred eecccccChhHHHHhcCcCceEee
Confidence 456889999999999999998753
No 215
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=95.62 E-value=0.0045 Score=48.64 Aligned_cols=25 Identities=28% Similarity=0.733 Sum_probs=22.5
Q ss_pred ccccCccCCcCcccchhcccccccc
Q psy4925 92 RYDIDMTKCIYCGFCQEACPVDAIV 116 (160)
Q Consensus 92 ~~~~~~~~C~~Cg~C~~~CP~~ai~ 116 (160)
.+.++...|++||.|+++||++|+.
T Consensus 42 ~~~~~~~~C~~C~~C~~~Cp~~a~~ 66 (295)
T TIGR02494 42 ELLFKENRCLGCGKCVEVCPAGTAR 66 (295)
T ss_pred eEEEccccCCCCchhhhhCcccccc
Confidence 4567889999999999999999987
No 216
>PRK08764 ferredoxin; Provisional
Probab=95.46 E-value=0.0053 Score=43.01 Aligned_cols=23 Identities=30% Similarity=0.816 Sum_probs=20.1
Q ss_pred CccccccchhhcHHhchhccccc
Q psy4925 56 SGEERCIACKLCEAICPAQAITI 78 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~ 78 (160)
++.++|+.|+.|+.+||+++|.+
T Consensus 112 v~~~~C~~Cg~Cv~~CP~~Ai~~ 134 (135)
T PRK08764 112 VIAPLCTGCELCVPACPVDCIEL 134 (135)
T ss_pred ecCCcCcCccchhhhcCccceEe
Confidence 45678999999999999999864
No 217
>KOG0063|consensus
Probab=95.41 E-value=0.0045 Score=51.32 Aligned_cols=23 Identities=43% Similarity=0.953 Sum_probs=16.2
Q ss_pred cCccCCcCcccchhccccccccc
Q psy4925 95 IDMTKCIYCGFCQEACPVDAIVE 117 (160)
Q Consensus 95 ~~~~~C~~Cg~C~~~CP~~ai~~ 117 (160)
+....|++||.|+.-||.+||..
T Consensus 47 ise~lCigcgicvkkcpf~ai~i 69 (592)
T KOG0063|consen 47 ISEELCIGCGICVKKCPFEAIQI 69 (592)
T ss_pred hhHhhhccccceeeccCcceEEe
Confidence 44456777888888888777654
No 218
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=95.38 E-value=0.0041 Score=51.89 Aligned_cols=26 Identities=42% Similarity=0.839 Sum_probs=22.4
Q ss_pred CCccccccchhhcHHhchhccccchh
Q psy4925 55 PSGEERCIACKLCEAICPAQAITIEA 80 (160)
Q Consensus 55 ~~~~~~Ci~Cg~Cv~~CP~~~i~~~~ 80 (160)
.+.+..|++||.|++-||.+||.+..
T Consensus 46 vIsE~lCiGCGICvkkCPF~AI~Ivn 71 (591)
T COG1245 46 VISEELCIGCGICVKKCPFDAISIVN 71 (591)
T ss_pred eeEhhhhccchhhhccCCcceEEEec
Confidence 45578899999999999999998754
No 219
>PRK13409 putative ATPase RIL; Provisional
Probab=95.37 E-value=0.0038 Score=53.91 Aligned_cols=26 Identities=42% Similarity=0.839 Sum_probs=22.2
Q ss_pred CCccccccchhhcHHhchhccccchh
Q psy4925 55 PSGEERCIACKLCEAICPAQAITIEA 80 (160)
Q Consensus 55 ~~~~~~Ci~Cg~Cv~~CP~~~i~~~~ 80 (160)
.+.++.||+||.||+-||.+||.+-+
T Consensus 45 ~~~e~~c~~c~~c~~~cp~~a~~i~~ 70 (590)
T PRK13409 45 VISEELCIGCGICVKKCPFDAISIVN 70 (590)
T ss_pred eeeHhhccccccccccCCcceEEEee
Confidence 35678899999999999999998753
No 220
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=95.35 E-value=0.0056 Score=49.42 Aligned_cols=26 Identities=35% Similarity=0.778 Sum_probs=22.5
Q ss_pred ccCCCccccccchhhcHHhchhcccc
Q psy4925 52 RRYPSGEERCIACKLCEAICPAQAIT 77 (160)
Q Consensus 52 ~~~~~~~~~Ci~Cg~Cv~~CP~~~i~ 77 (160)
..+.+|.++|++||.|+.+||++++.
T Consensus 207 ~~~~id~~~Ci~Cg~Ci~~CP~~a~~ 232 (341)
T TIGR02066 207 KSLEVDVEKCIYCGNCYTMCPAMPIF 232 (341)
T ss_pred CceeeccccCCcCCchHHhCchhhcc
Confidence 34567889999999999999999885
No 221
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=95.32 E-value=0.0042 Score=49.20 Aligned_cols=27 Identities=33% Similarity=0.642 Sum_probs=24.1
Q ss_pred cccCccCCcCcccchhcccccccccCC
Q psy4925 93 YDIDMTKCIYCGFCQEACPVDAIVEGP 119 (160)
Q Consensus 93 ~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 119 (160)
..++.+.|.+|+.|+++||++||....
T Consensus 167 P~~~~E~c~gc~~cv~~C~~gAI~~~~ 193 (317)
T COG2221 167 PKVDEELCRGCGKCVKVCPTGAITWDG 193 (317)
T ss_pred CccCHHHhchhHhHHHhCCCCceeecc
Confidence 457888999999999999999999875
No 222
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=95.27 E-value=0.0066 Score=40.35 Aligned_cols=24 Identities=25% Similarity=0.603 Sum_probs=20.7
Q ss_pred CCccccccchhhcHHhchhccccc
Q psy4925 55 PSGEERCIACKLCEAICPAQAITI 78 (160)
Q Consensus 55 ~~~~~~Ci~Cg~Cv~~CP~~~i~~ 78 (160)
.++...|+.|+.|+.+||+++|..
T Consensus 62 ~i~~~~C~~Cg~C~~~CP~~Ai~~ 85 (101)
T TIGR00402 62 EFDNAECDFCGKCAEACPTNAFHP 85 (101)
T ss_pred EecCccCcCccChhhHCCccccCc
Confidence 456678999999999999999864
No 223
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=94.99 E-value=0.009 Score=47.61 Aligned_cols=27 Identities=30% Similarity=0.615 Sum_probs=22.6
Q ss_pred CCCccccccchhhcHHhchhccccchh
Q psy4925 54 YPSGEERCIACKLCEAICPAQAITIEA 80 (160)
Q Consensus 54 ~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~ 80 (160)
+.++.+.|++|+.|+.+||++|+....
T Consensus 196 ~~id~~~C~~Cg~Cv~~CP~~Al~~~~ 222 (314)
T TIGR02912 196 VVRDHSKCIGCGECVLKCPTGAWTRSE 222 (314)
T ss_pred EEeCCCcCcCcchhhhhCCHhhcccCc
Confidence 345788999999999999999987543
No 224
>PRK06991 ferredoxin; Provisional
Probab=94.99 E-value=0.0098 Score=46.51 Aligned_cols=27 Identities=56% Similarity=1.015 Sum_probs=23.0
Q ss_pred cccCccCCcCcccchhcccccccccCC
Q psy4925 93 YDIDMTKCIYCGFCQEACPVDAIVEGP 119 (160)
Q Consensus 93 ~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 119 (160)
..++...|++|+.|+.+||+++|.+..
T Consensus 80 ~~id~~~CigCg~Cv~aCP~~AI~~~~ 106 (270)
T PRK06991 80 AVIDEQLCIGCTLCMQACPVDAIVGAP 106 (270)
T ss_pred eEEccccCCCCcHHHHhCCHhheeccc
Confidence 356778999999999999999997653
No 225
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=94.94 E-value=0.0083 Score=39.49 Aligned_cols=25 Identities=16% Similarity=0.392 Sum_probs=20.8
Q ss_pred ccCCCccccccchhhcHHhchhccc
Q psy4925 52 RRYPSGEERCIACKLCEAICPAQAI 76 (160)
Q Consensus 52 ~~~~~~~~~Ci~Cg~Cv~~CP~~~i 76 (160)
..+.++.++|++||.|+.+||.+++
T Consensus 54 G~V~vd~e~CigCg~C~~~C~~~~~ 78 (95)
T PRK15449 54 GSVRFDYAGCLECGTCRILGLGSAL 78 (95)
T ss_pred CCEEEcCCCCCcchhhhhhcCCCCc
Confidence 3455678999999999999998765
No 226
>cd07032 RNAP_I_II_AC40 AC40 subunit of Eukaryotic RNA polymerase (RNAP) I and RNAP III. The eukaryotic AC40 subunit of RNA polymerase (RNAP) I and RNAP III is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. At least three distinct RNAP complexes are found in eukaryotic nuclei: RNAP I, RNAP II, and RNAP III. RNAP I is responsible for the synthesis of ribosomal RNA precursor, while RNAP III functions in the synthesis of 5S and tRNA. The AC40 subunit is the equivalent of the RPB3 subunit of RNAP II. The RPB3 subunit is similar to the bacterial RNAP alpha subunit in that it contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit which is involved in dimerization; and the other is an inserted beta sheet subdomain. The RPB3 subun
Probab=94.90 E-value=0.009 Score=47.17 Aligned_cols=68 Identities=18% Similarity=0.061 Sum_probs=46.8
Q ss_pred chhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcc-ccccccc---CCcccccccchhhhhccH
Q psy4925 63 ACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEAC-PVDAIVE---GPNFEFSTESHEELLYNK 135 (160)
Q Consensus 63 ~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~C-P~~ai~~---~~~~~~~~~~~~~~~~~~ 135 (160)
.+..|+..||.+++.++..+. . ......+...|+.|..|+..+ -.+++.+ .++|.|..|+.|.+-...
T Consensus 201 ~~~~~~~~cP~~Vf~i~~~~~-~----~~~~V~~~~~ct~crec~~~~~~~~~V~v~~~~d~fiF~VES~G~l~p~~ 272 (291)
T cd07032 201 DAEKLQKCFPPGVIDIEEVKG-K----KKAVVANPRKDTLSREVLRHEEFKDKVELGRVRDHFIFSIESTGALPPDV 272 (291)
T ss_pred HHHHHHhhCCCccEEecccCC-C----ceEEEcccccCcccHhHhhhhccCCceeEEEeCCEEEEEEeCCCCCCHHH
Confidence 577899999999988753211 0 113456888999999999876 2344544 455888888887765433
No 227
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=94.70 E-value=0.011 Score=46.95 Aligned_cols=24 Identities=29% Similarity=0.790 Sum_probs=20.7
Q ss_pred CccccccchhhcHHhchhccccch
Q psy4925 56 SGEERCIACKLCEAICPAQAITIE 79 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~~ 79 (160)
.+...|.+|+.|+.+||++||.+.
T Consensus 286 ~d~~~C~gCg~C~~~CP~~AI~~~ 309 (312)
T PRK14028 286 FDYQYCKGCGVCAEVCPTGAIQMV 309 (312)
T ss_pred CCcccCcCcCchhhhCCHhheEec
Confidence 455789999999999999998764
No 228
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=94.56 E-value=0.015 Score=44.48 Aligned_cols=24 Identities=33% Similarity=0.762 Sum_probs=20.4
Q ss_pred cccccchhhcHHhchhccccchhh
Q psy4925 58 EERCIACKLCEAICPAQAITIEAE 81 (160)
Q Consensus 58 ~~~Ci~Cg~Cv~~CP~~~i~~~~~ 81 (160)
...|++||.|+.+||++||.....
T Consensus 189 ~~~C~~Cg~Cv~vCP~gAL~~~~~ 212 (234)
T PRK07569 189 SETCTSCGKCVQACPTGAIFRKGS 212 (234)
T ss_pred cccccchHHHHHhCCCCcEEecCC
Confidence 458999999999999999976543
No 229
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=94.54 E-value=0.011 Score=45.12 Aligned_cols=46 Identities=33% Similarity=0.866 Sum_probs=35.8
Q ss_pred ccc-cccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccc
Q psy4925 57 GEE-RCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDA 114 (160)
Q Consensus 57 ~~~-~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~a 114 (160)
+.. .|.+|+.|...||+.++.... -......|+.||.|...||...
T Consensus 187 ~qg~~C~G~~TC~A~CP~~ai~c~G------------c~g~~~~~~~~Ga~~v~~~rs~ 233 (247)
T COG1941 187 EQGLPCMGCGTCAASCPSRAIPCRG------------CRGNIPRCIKCGACFVSCPRSK 233 (247)
T ss_pred cCCCcccCchhhhccCCccCCcccC------------CcCCcccchhhhHHHHHHhHHh
Confidence 344 799999999999998887652 1356667999999999998764
No 230
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=94.43 E-value=0.013 Score=47.91 Aligned_cols=23 Identities=52% Similarity=0.888 Sum_probs=20.7
Q ss_pred ccCccCCcCcccchhcccccccc
Q psy4925 94 DIDMTKCIYCGFCQEACPVDAIV 116 (160)
Q Consensus 94 ~~~~~~C~~Cg~C~~~CP~~ai~ 116 (160)
.++...|+.||.|+.+||++|+.
T Consensus 3 ~id~~kCi~Cg~Cv~~CP~~ai~ 25 (374)
T TIGR02512 3 VRDMSKCIGCGRCVRACTNVQIV 25 (374)
T ss_pred EechhhCCcChHhhhhCCHhhcc
Confidence 46778899999999999999986
No 231
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=94.39 E-value=0.014 Score=47.06 Aligned_cols=27 Identities=33% Similarity=0.824 Sum_probs=23.5
Q ss_pred ccCccCCcCcccchhcccccccccCCc
Q psy4925 94 DIDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 94 ~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
.++...|++||.|+.+||+++|.+...
T Consensus 8 vi~~~~C~gCg~C~~~CP~~aI~~~~~ 34 (341)
T PRK09326 8 VIEYDVCTACGACEAVCPIGAITVDKK 34 (341)
T ss_pred EECcccCcChHHHHHhCCHhhhecccC
Confidence 467789999999999999999988654
No 232
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=94.19 E-value=0.014 Score=47.73 Aligned_cols=25 Identities=32% Similarity=0.868 Sum_probs=21.8
Q ss_pred CccccccchhhcHHhchhccccchh
Q psy4925 56 SGEERCIACKLCEAICPAQAITIEA 80 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~~~ 80 (160)
++.++|+.|+.|+.+||.+|+.+..
T Consensus 327 Id~~~Ci~CGaCV~aCP~~AI~~~~ 351 (391)
T TIGR03287 327 LNTEDCFGCGYCAEICPGGAFEVNL 351 (391)
T ss_pred eChHhCcChHHHHhhCCccceEEeC
Confidence 5678899999999999999987654
No 233
>KOG0063|consensus
Probab=94.17 E-value=0.014 Score=48.59 Aligned_cols=55 Identities=25% Similarity=0.325 Sum_probs=40.3
Q ss_pred ccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCc
Q psy4925 57 GEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 57 ~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
.+.-||+||.||+-||.+|+.+-... .-......|..|+.|..-|+-.+.+....
T Consensus 48 se~lCigcgicvkkcpf~ai~iinlp---------~nl~~etthry~~n~fKlhrlp~prpg~v 102 (592)
T KOG0063|consen 48 SEELCIGCGICVKKCPFEAIQIINLP---------TNLEKETTHRYSANSFKLHRLPIPRPGQV 102 (592)
T ss_pred hHhhhccccceeeccCcceEEecCCc---------hhHhhhhhhhhcccceeeccCCCCCcchh
Confidence 45679999999999999998764432 11234446888999999998777665544
No 234
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=94.06 E-value=0.019 Score=33.55 Aligned_cols=16 Identities=31% Similarity=1.024 Sum_probs=8.1
Q ss_pred ccccchhhcHHhchhc
Q psy4925 59 ERCIACKLCEAICPAQ 74 (160)
Q Consensus 59 ~~Ci~Cg~Cv~~CP~~ 74 (160)
..|+.||.|+.+||.+
T Consensus 41 ~~C~~C~~C~~~CP~~ 56 (57)
T PF13183_consen 41 WSCTTCGACSEVCPVG 56 (57)
T ss_dssp GG-----HHHHH-TT-
T ss_pred cCCcCcCCccCcCccc
Confidence 5799999999999986
No 235
>TIGR02486 RDH reductive dehalogenase. This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene.
Probab=93.98 E-value=0.02 Score=45.71 Aligned_cols=23 Identities=39% Similarity=0.915 Sum_probs=20.1
Q ss_pred cCCcCcccchhcccccccccCCc
Q psy4925 98 TKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 98 ~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
.-|..|+.|+++||++||.....
T Consensus 205 ~fC~~C~~C~~~CP~~Ai~~~~~ 227 (314)
T TIGR02486 205 KFCETCGKCADECPSGAISKGGE 227 (314)
T ss_pred ccCcchhHHHhhCCccccCCCCC
Confidence 46999999999999999987654
No 236
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=93.80 E-value=0.021 Score=47.30 Aligned_cols=27 Identities=37% Similarity=0.886 Sum_probs=22.9
Q ss_pred CCccccccchhhcHHhchh-ccccchhh
Q psy4925 55 PSGEERCIACKLCEAICPA-QAITIEAE 81 (160)
Q Consensus 55 ~~~~~~Ci~Cg~Cv~~CP~-~~i~~~~~ 81 (160)
.++.+.|++|+.|+.+||. ++|.+...
T Consensus 373 ~i~~~~C~~Cg~C~~~CP~~~Ai~~~~~ 400 (420)
T PRK08318 373 EVIEEECVGCNLCAHVCPVEGCITMGEV 400 (420)
T ss_pred EechhhCcccchHHhhCCCCCCEEEecc
Confidence 3567899999999999999 99976653
No 237
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=93.58 E-value=0.026 Score=43.18 Aligned_cols=26 Identities=42% Similarity=0.788 Sum_probs=22.3
Q ss_pred ccCccCCcCcccchhcccccccccCC
Q psy4925 94 DIDMTKCIYCGFCQEACPVDAIVEGP 119 (160)
Q Consensus 94 ~~~~~~C~~Cg~C~~~CP~~ai~~~~ 119 (160)
.++...|+.|+.|+++||.+++....
T Consensus 144 ~id~~~C~~C~~C~~~CP~~ai~~~~ 169 (234)
T TIGR02700 144 MIDRKRCKGCGICVDACPRSAIDMVD 169 (234)
T ss_pred EEChhHCcCcchHHHhCCcccEEecC
Confidence 46778899999999999999988654
No 238
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=93.49 E-value=0.027 Score=48.38 Aligned_cols=25 Identities=28% Similarity=0.881 Sum_probs=21.7
Q ss_pred CCccccccchhhcHHhchhccccch
Q psy4925 55 PSGEERCIACKLCEAICPAQAITIE 79 (160)
Q Consensus 55 ~~~~~~Ci~Cg~Cv~~CP~~~i~~~ 79 (160)
.++.++|+.|+.|+.+||++||.+.
T Consensus 537 ~i~~~~C~~Cg~C~~~CP~~Ai~~~ 561 (564)
T PRK12771 537 HFDYDKCTGCHICADVCPCGAIEMG 561 (564)
T ss_pred EEecccCcChhHHHhhcCcCceEec
Confidence 3567899999999999999999764
No 239
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=93.29 E-value=0.028 Score=43.80 Aligned_cols=25 Identities=52% Similarity=0.949 Sum_probs=21.6
Q ss_pred cccCccCCcCcccchhccccccccc
Q psy4925 93 YDIDMTKCIYCGFCQEACPVDAIVE 117 (160)
Q Consensus 93 ~~~~~~~C~~Cg~C~~~CP~~ai~~ 117 (160)
..++.+.|..||.|.++|+.+||..
T Consensus 64 p~i~~e~C~~CG~C~~vC~f~Ai~~ 88 (284)
T COG1149 64 PEIDPEKCIRCGKCAEVCRFGAIVV 88 (284)
T ss_pred cccChhhccccCcHHHhCCCCeEEE
Confidence 3567778999999999999999964
No 240
>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B ....
Probab=93.17 E-value=0.038 Score=32.82 Aligned_cols=18 Identities=44% Similarity=1.191 Sum_probs=9.8
Q ss_pred cccccchhhcHHhchhcc
Q psy4925 58 EERCIACKLCEAICPAQA 75 (160)
Q Consensus 58 ~~~Ci~Cg~Cv~~CP~~~ 75 (160)
...|+.||.|..+||.+.
T Consensus 43 ~~~C~~Cg~C~~~CP~~l 60 (61)
T PF13534_consen 43 ASLCIGCGLCESVCPQGL 60 (61)
T ss_dssp TTT--S--HHHHH-TT--
T ss_pred cccCcCcCcCcccccCCC
Confidence 567999999999999873
No 241
>TIGR00276 iron-sulfur cluster binding protein, putative. This series of proteins contain the prosite signature for 4Fe-4S ferredoxins iron-sulfur binding proteins (C-x(2)-C-x(2)-C-x(3)-C-[PEG]) between residues 175-188 of the model.
Probab=93.03 E-value=0.032 Score=43.91 Aligned_cols=21 Identities=43% Similarity=0.873 Sum_probs=18.6
Q ss_pred ccCCcCcccchhccccccccc
Q psy4925 97 MTKCIYCGFCQEACPVDAIVE 117 (160)
Q Consensus 97 ~~~C~~Cg~C~~~CP~~ai~~ 117 (160)
...|..|+.|+++||++||..
T Consensus 158 ~~~C~~C~~C~~aCPt~AI~~ 178 (282)
T TIGR00276 158 EEYCGRCTKCIDACPTQALVE 178 (282)
T ss_pred CCCCccHHHHHHhcCcccccC
Confidence 457999999999999999873
No 242
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=92.97 E-value=0.029 Score=42.78 Aligned_cols=28 Identities=32% Similarity=0.666 Sum_probs=23.5
Q ss_pred cccCccCCcCcccchhcccccccccCCc
Q psy4925 93 YDIDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 93 ~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
..++...|+.|+.|+.+||.+++.....
T Consensus 169 ~~id~~~C~~C~~C~~aCP~~ai~~~~~ 196 (228)
T TIGR03294 169 KVVNQGLCMGCGTCAAACPTRAIEMEDG 196 (228)
T ss_pred EEEChhhCcChhHHHHhCCHhhEEEeCC
Confidence 3567789999999999999999887543
No 243
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=92.91 E-value=0.051 Score=47.11 Aligned_cols=20 Identities=25% Similarity=0.291 Sum_probs=17.3
Q ss_pred cccchhhcHHhchhccccch
Q psy4925 60 RCIACKLCEAICPAQAITIE 79 (160)
Q Consensus 60 ~Ci~Cg~Cv~~CP~~~i~~~ 79 (160)
.|..||.|+.+||+||+...
T Consensus 183 ~~~~cg~cv~vCP~GAl~~k 202 (603)
T TIGR01973 183 ESELSGNLIDICPVGALTSK 202 (603)
T ss_pred CCcccCChHhhCCccccccc
Confidence 57789999999999999743
No 244
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=92.72 E-value=0.052 Score=44.95 Aligned_cols=28 Identities=43% Similarity=0.858 Sum_probs=23.7
Q ss_pred cccCccCCcCcccchhcccccccccCCc
Q psy4925 93 YDIDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 93 ~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
..++...|+.|+.|+.+||.++|.....
T Consensus 5 ~~id~~~Ci~C~~C~~~CP~~ai~~~~~ 32 (411)
T TIGR03224 5 HLIDPEICIRCNTCEETCPIDAITHDDR 32 (411)
T ss_pred eeeCcccCcCccchhhhCCcccEeccCC
Confidence 4578889999999999999999876543
No 245
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=92.59 E-value=0.041 Score=47.42 Aligned_cols=29 Identities=24% Similarity=0.591 Sum_probs=23.1
Q ss_pred ccCCCccccccchhhcHHhchhccccchh
Q psy4925 52 RRYPSGEERCIACKLCEAICPAQAITIEA 80 (160)
Q Consensus 52 ~~~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~ 80 (160)
.+..+|...|++||.|+.+||..++....
T Consensus 601 ~k~~id~~~C~GCg~C~~iCP~~a~~~~~ 629 (640)
T COG4231 601 KKARIDPSSCNGCGSCVEVCPSFAIKEGG 629 (640)
T ss_pred CceeecccccccchhhhhcCchhheeccc
Confidence 33446777899999999999999887543
No 246
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=92.42 E-value=0.063 Score=42.53 Aligned_cols=59 Identities=24% Similarity=0.364 Sum_probs=34.6
Q ss_pred ccCccCCcCcccchhcccccccccCCcccccccchhhhhccHHHHhcc--CCcchHHHhhh
Q psy4925 94 DIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTESHEELLYNKEKLLSN--GDKWESEIASN 152 (160)
Q Consensus 94 ~~~~~~C~~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 152 (160)
......|..||.|+..||.+||..........+..-.-.+.....-+. ...|++...++
T Consensus 189 ~v~e~kc~~c~~cv~~cp~~Ai~~~~~~~I~~~~ci~c~~c~~ac~~gav~~~W~~~~~~f 249 (354)
T COG2768 189 VVVEEKCYDCGLCVKICPVGAITLTKVVKIDYEKCIGCGQCMEACPYGAVDQNWEEDSPEF 249 (354)
T ss_pred eeeeecccccchhhhhCCCcceecccceeechhhccchhhhhhhccCcccccchhhccHHH
Confidence 356678999999999999999998744333333332222222222221 15666655443
No 247
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=92.40 E-value=0.047 Score=33.08 Aligned_cols=20 Identities=40% Similarity=0.848 Sum_probs=16.8
Q ss_pred ccCccCCcCcccchhccccc
Q psy4925 94 DIDMTKCIYCGFCQEACPVD 113 (160)
Q Consensus 94 ~~~~~~C~~Cg~C~~~CP~~ 113 (160)
.++...|++||.|+..||.-
T Consensus 2 ~vD~~~C~gcg~C~~~aP~v 21 (65)
T PF13459_consen 2 WVDRDRCIGCGLCVELAPEV 21 (65)
T ss_pred EEecccCcCccHHHhhCCcc
Confidence 35678899999999999853
No 248
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=92.30 E-value=0.066 Score=47.98 Aligned_cols=20 Identities=25% Similarity=0.291 Sum_probs=17.2
Q ss_pred cccchhhcHHhchhccccch
Q psy4925 60 RCIACKLCEAICPAQAITIE 79 (160)
Q Consensus 60 ~Ci~Cg~Cv~~CP~~~i~~~ 79 (160)
.|..||.|+.+||+||+...
T Consensus 191 ~~~~cG~cv~vCP~GAl~~k 210 (797)
T PRK07860 191 QSYFSGNTVQICPVGALTGA 210 (797)
T ss_pred CccccCCchhhCCccccccc
Confidence 46789999999999999743
No 249
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=91.94 E-value=0.056 Score=33.35 Aligned_cols=21 Identities=33% Similarity=0.649 Sum_probs=18.0
Q ss_pred cccCccCCcCcccchhccccc
Q psy4925 93 YDIDMTKCIYCGFCQEACPVD 113 (160)
Q Consensus 93 ~~~~~~~C~~Cg~C~~~CP~~ 113 (160)
..++.+.|++||+|..+||.-
T Consensus 3 v~vDrd~Cigcg~C~~~aPdv 23 (68)
T COG1141 3 VIVDRDTCIGCGACLAVAPDV 23 (68)
T ss_pred EEechhhccccchhhhcCCcc
Confidence 456778999999999999965
No 250
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=91.83 E-value=0.068 Score=49.79 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=21.9
Q ss_pred cccCccCCcCcccchhccccccccc
Q psy4925 93 YDIDMTKCIYCGFCQEACPVDAIVE 117 (160)
Q Consensus 93 ~~~~~~~C~~Cg~C~~~CP~~ai~~ 117 (160)
...+...|+.||.|+.+||++||..
T Consensus 678 p~~~~~~Ci~Cg~C~~vCP~~ai~~ 702 (1165)
T TIGR02176 678 PVWVPDNCIQCNQCAFVCPHAAIRP 702 (1165)
T ss_pred ceeccccCCCccchHHhcChhhccc
Confidence 3467788999999999999999975
No 251
>PRK13795 hypothetical protein; Provisional
Probab=91.17 E-value=0.075 Score=46.44 Aligned_cols=27 Identities=33% Similarity=0.677 Sum_probs=22.9
Q ss_pred ccCccCCcCcccchhcccccccccCCc
Q psy4925 94 DIDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 94 ~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
.++...|..|+.|+.+||++||.....
T Consensus 577 v~~~~~C~~Cg~C~~~CP~~ai~~~~~ 603 (636)
T PRK13795 577 LRRAAECVGCGVCVGACPTGAIRIEEG 603 (636)
T ss_pred EEccccCCCHhHHHHhCCcccEEeecC
Confidence 456778999999999999999887543
No 252
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=91.13 E-value=0.086 Score=45.70 Aligned_cols=20 Identities=40% Similarity=0.976 Sum_probs=17.1
Q ss_pred CccccccchhhcHHhchhccc
Q psy4925 56 SGEERCIACKLCEAICPAQAI 76 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i 76 (160)
++. .|+.||.|+.+||.+|+
T Consensus 576 i~~-~C~~Cg~C~~~CP~~Ai 595 (595)
T TIGR03336 576 IDP-LCTGCGVCAQICPFDAI 595 (595)
T ss_pred eCC-CCcCHHHHHhhCccccC
Confidence 444 79999999999999875
No 253
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=90.74 E-value=0.08 Score=38.86 Aligned_cols=30 Identities=47% Similarity=0.750 Sum_probs=25.3
Q ss_pred cccCccCCcCcccchhcccccccccCCccc
Q psy4925 93 YDIDMTKCIYCGFCQEACPVDAIVEGPNFE 122 (160)
Q Consensus 93 ~~~~~~~C~~Cg~C~~~CP~~ai~~~~~~~ 122 (160)
..++...|++|..|+++||.+||.-.....
T Consensus 110 a~i~e~~ciGCtkCiqaCpvdAivg~~~~m 139 (198)
T COG2878 110 ALIDEANCIGCTKCIQACPVDAIVGATKAM 139 (198)
T ss_pred eEecchhccccHHHHHhCChhhhhccchhH
Confidence 346888999999999999999998777633
No 254
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=90.61 E-value=0.084 Score=42.52 Aligned_cols=23 Identities=35% Similarity=0.746 Sum_probs=19.8
Q ss_pred cCCcCcccchhcccccccccCCc
Q psy4925 98 TKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 98 ~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
+.|-.|..|+++||++||.-...
T Consensus 185 ~~Cg~C~~CldaCPt~Al~~~~~ 207 (337)
T COG1600 185 DHCGSCTRCLDACPTGALVAPYT 207 (337)
T ss_pred ccChhhHHHHhhCCcccccCCCc
Confidence 67999999999999999886443
No 255
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=90.28 E-value=0.1 Score=40.46 Aligned_cols=25 Identities=44% Similarity=0.784 Sum_probs=21.1
Q ss_pred CccccccchhhcHHhchhccccchh
Q psy4925 56 SGEERCIACKLCEAICPAQAITIEA 80 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~~~ 80 (160)
.+...|+.|+.|+.+||.+++.+..
T Consensus 196 ~~~~~C~~C~~C~~~Cp~~AI~~~~ 220 (259)
T cd07030 196 EDLEDCSLCKLCERACDAGAIRVGW 220 (259)
T ss_pred eChhhCcCchHHHHhCCCCcEEEEe
Confidence 3467899999999999999887654
No 256
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=90.12 E-value=0.12 Score=40.21 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=21.1
Q ss_pred ccCCcCcccchhcccccccccCCc
Q psy4925 97 MTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 97 ~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
...|..|+.|+.+||.+++.+...
T Consensus 168 ~~~C~~C~~C~~~CP~~vi~~~~~ 191 (263)
T PRK00783 168 SEDCDECEKCVEACPRGVLELKEG 191 (263)
T ss_pred cccCCchHHHHHhCCccccEecCC
Confidence 578999999999999999987654
No 257
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=90.01 E-value=0.17 Score=44.64 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=17.2
Q ss_pred cccchhhcHHhchhccccch
Q psy4925 60 RCIACKLCEAICPAQAITIE 79 (160)
Q Consensus 60 ~Ci~Cg~Cv~~CP~~~i~~~ 79 (160)
.|..||.|+.+||+||+...
T Consensus 186 ~~~~~G~cv~~CPvgAl~~k 205 (687)
T PRK09130 186 TSELSGNVIDLCPVGALTSK 205 (687)
T ss_pred cccccccHHhhCCCcccccc
Confidence 46789999999999999744
No 258
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=89.94 E-value=0.13 Score=41.53 Aligned_cols=22 Identities=36% Similarity=1.038 Sum_probs=17.8
Q ss_pred CccccccchhhcHHhchhccccc
Q psy4925 56 SGEERCIACKLCEAICPAQAITI 78 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~ 78 (160)
+....|++||+|+.+||++ |++
T Consensus 298 fG~~~CvgCGrC~~~CP~~-idi 319 (334)
T TIGR02910 298 NGYHMCVGCGRCDDICPEY-ISF 319 (334)
T ss_pred cCccccCCcCchhhhCCCC-CCH
Confidence 3467799999999999987 443
No 259
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=89.86 E-value=0.14 Score=46.13 Aligned_cols=20 Identities=15% Similarity=0.184 Sum_probs=17.4
Q ss_pred cccchhhcHHhchhccccch
Q psy4925 60 RCIACKLCEAICPAQAITIE 79 (160)
Q Consensus 60 ~Ci~Cg~Cv~~CP~~~i~~~ 79 (160)
.|..||.|+.+||+||+...
T Consensus 190 ~~~~~G~cv~vCP~GAl~~k 209 (847)
T PRK08166 190 ESEFSGNLVEVCPTGVFTDK 209 (847)
T ss_pred cChhhCChHhhCCchhcccc
Confidence 57789999999999999754
No 260
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=89.66 E-value=0.19 Score=44.92 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=17.0
Q ss_pred cccchhhcHHhchhccccch
Q psy4925 60 RCIACKLCEAICPAQAITIE 79 (160)
Q Consensus 60 ~Ci~Cg~Cv~~CP~~~i~~~ 79 (160)
.|..||.|+.+||+||+...
T Consensus 185 ~~~~cg~cv~~CP~GAl~~k 204 (776)
T PRK09129 185 DSELSGNMIDLCPVGALTSK 204 (776)
T ss_pred cCcccCCchhhCCccccccc
Confidence 46679999999999999744
No 261
>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A ....
Probab=89.50 E-value=0.12 Score=30.71 Aligned_cols=18 Identities=50% Similarity=0.979 Sum_probs=11.3
Q ss_pred CccCCcCcccchhccccc
Q psy4925 96 DMTKCIYCGFCQEACPVD 113 (160)
Q Consensus 96 ~~~~C~~Cg~C~~~CP~~ 113 (160)
|...|+.||.|+..+|.-
T Consensus 2 D~~~Ci~Cg~C~~~aP~v 19 (58)
T PF13370_consen 2 DRDKCIGCGLCVEIAPDV 19 (58)
T ss_dssp -TTT--S-SHHHHH-TTT
T ss_pred ChhhCcCCChHHHhCcHh
Confidence 456899999999999976
No 262
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=88.77 E-value=0.19 Score=38.93 Aligned_cols=21 Identities=43% Similarity=0.986 Sum_probs=17.7
Q ss_pred cCccCCcCcccchhccccccc
Q psy4925 95 IDMTKCIYCGFCQEACPVDAI 115 (160)
Q Consensus 95 ~~~~~C~~Cg~C~~~CP~~ai 115 (160)
.+...|+.||.|+.+||..++
T Consensus 154 ~~~~~CI~CG~C~saCP~~~~ 174 (250)
T PRK07570 154 FDAAACIGCGACVAACPNGSA 174 (250)
T ss_pred hCccccCCCcccccccCCccc
Confidence 456679999999999998863
No 263
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=88.53 E-value=0.18 Score=46.36 Aligned_cols=21 Identities=24% Similarity=0.719 Sum_probs=18.2
Q ss_pred cccchhhcHHhchhccccchh
Q psy4925 60 RCIACKLCEAICPAQAITIEA 80 (160)
Q Consensus 60 ~Ci~Cg~Cv~~CP~~~i~~~~ 80 (160)
.|++||.|+.+||++++.+..
T Consensus 922 ~C~~CG~C~~vCP~~a~~~~g 942 (1012)
T TIGR03315 922 MCNECGNCATFCPYDGAPYKD 942 (1012)
T ss_pred cccccchHHHhCCCCccccee
Confidence 499999999999999887643
No 264
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=88.41 E-value=0.2 Score=35.33 Aligned_cols=16 Identities=38% Similarity=1.138 Sum_probs=14.4
Q ss_pred cCCcCcccchhccccc
Q psy4925 98 TKCIYCGFCQEACPVD 113 (160)
Q Consensus 98 ~~C~~Cg~C~~~CP~~ 113 (160)
..|+.||.|..+||+.
T Consensus 2 ~~Ci~CG~C~~~CP~~ 17 (144)
T TIGR03290 2 KACYQCGTCTGSCPSG 17 (144)
T ss_pred ccccCCCCCcCcCCCc
Confidence 4699999999999985
No 265
>COG1035 FrhB Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]
Probab=88.12 E-value=0.21 Score=40.19 Aligned_cols=24 Identities=42% Similarity=0.863 Sum_probs=20.2
Q ss_pred CccCCcCcccchhcccccccccCCc
Q psy4925 96 DMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 96 ~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
+...|+.||.|+..||. +|++...
T Consensus 3 ~~~~c~~Cg~C~a~cp~-~i~~~~~ 26 (332)
T COG1035 3 DAGLCTGCGTCAAVCPY-AITERDE 26 (332)
T ss_pred cCcccccchhhHhhCCc-eEEEecc
Confidence 55679999999999999 8887554
No 266
>PF06902 Fer4_19: Divergent 4Fe-4S mono-cluster; InterPro: IPR010693 This entry represents bacterial ferredoxins such Ferredoxin-1, -2 and -soy from Streptomyces griseolus and Ferredoxin fas2 from Rhodococcus fascians, plus several bacterial hypothetical proteins that contain three highly conserved cysteine residues. These ferredoxins each bind a 3Fe-4S cluster. Ferredoxin-soy (SoyB) act as electron transport protein for the cytochrome P450-SOY system []. Ferredoxin-1 (SuaB) and Ferredoxin-2 (SubB) act as electron transport proteins for the herbicide-metabolising cytochrome P-450 SU1 and SU2 systems, respectively [, ]. Ferredoxin-fas2 also plays a role in electrontransfer, the fas operon encoding genes involved in cytokinin production and in host plant fasciation (leafy gall).
Probab=87.86 E-value=0.11 Score=31.55 Aligned_cols=56 Identities=20% Similarity=0.256 Sum_probs=33.1
Q ss_pred CCCccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCC
Q psy4925 54 YPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 119 (160)
Q Consensus 54 ~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 119 (160)
+.++.+.|++=|.|+..-|. +......+ -+..+...=..-..-++.||.+||.+..
T Consensus 8 V~~d~~~C~hag~Cv~~~p~-VFd~~~~~---------~v~~d~a~~~~v~~~v~~CPSGAL~~~~ 63 (64)
T PF06902_consen 8 VTWDRERCIHAGFCVRGAPE-VFDQDDEP---------WVSPDEASAEEVREAVDRCPSGALSYWD 63 (64)
T ss_pred EEECcCcccchhhhhcCCCC-cccCCCCC---------cCCcCccCHHHHHHHHHcCCccCcEEee
Confidence 34577899999999998874 23222211 1111111112234678899999998743
No 267
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=87.83 E-value=0.17 Score=41.03 Aligned_cols=18 Identities=33% Similarity=1.014 Sum_probs=15.7
Q ss_pred ccccccchhhcHHhchhc
Q psy4925 57 GEERCIACKLCEAICPAQ 74 (160)
Q Consensus 57 ~~~~Ci~Cg~Cv~~CP~~ 74 (160)
....|++||+|..+||.+
T Consensus 305 g~~~CvgCGrC~~~CP~~ 322 (344)
T PRK15055 305 GYHMCVGCGRCDDRCPEY 322 (344)
T ss_pred chhhCcCcCccccccCCC
Confidence 346799999999999986
No 268
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=86.52 E-value=0.22 Score=37.67 Aligned_cols=18 Identities=33% Similarity=0.920 Sum_probs=15.7
Q ss_pred cccccchhhcHHhchhcc
Q psy4925 58 EERCIACKLCEAICPAQA 75 (160)
Q Consensus 58 ~~~Ci~Cg~Cv~~CP~~~ 75 (160)
...|+.||.|+.+||.+.
T Consensus 193 ~~~C~~Cg~C~~~CP~~I 210 (220)
T TIGR00384 193 VWRCTTCMNCSEVCPKGV 210 (220)
T ss_pred CccCccccccccccCCCC
Confidence 457999999999999874
No 269
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=86.03 E-value=0.28 Score=43.35 Aligned_cols=21 Identities=38% Similarity=0.985 Sum_probs=18.3
Q ss_pred CccCCcCcccchhcccccccc
Q psy4925 96 DMTKCIYCGFCQEACPVDAIV 116 (160)
Q Consensus 96 ~~~~C~~Cg~C~~~CP~~ai~ 116 (160)
....|+.||.|+.+||.+.+.
T Consensus 368 ~e~~CI~CG~Cv~aCP~~llP 388 (695)
T PRK05035 368 PEQPCIRCGACADACPASLLP 388 (695)
T ss_pred chhhcCCcccHHHHCCccchh
Confidence 456799999999999999774
No 270
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=86.00 E-value=0.29 Score=37.82 Aligned_cols=19 Identities=47% Similarity=1.212 Sum_probs=16.2
Q ss_pred CccCCcCcccchhcccccc
Q psy4925 96 DMTKCIYCGFCQEACPVDA 114 (160)
Q Consensus 96 ~~~~C~~Cg~C~~~CP~~a 114 (160)
+...|+.||.|..+||...
T Consensus 150 ~~~~CI~CG~C~saCP~~~ 168 (249)
T PRK08640 150 ELSKCMTCGCCLEACPNVN 168 (249)
T ss_pred hhhhccCcCcccccCCCCc
Confidence 4567999999999999774
No 271
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=85.79 E-value=0.3 Score=39.97 Aligned_cols=55 Identities=20% Similarity=0.513 Sum_probs=37.6
Q ss_pred ccCccccccCCCccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcc---------cchhccc
Q psy4925 45 FRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCG---------FCQEACP 111 (160)
Q Consensus 45 ~~~~~~~~~~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg---------~C~~~CP 111 (160)
...+.+..-+.+|.++|.+...|++.||..-+-+... ......|+.|. .|.+.|-
T Consensus 200 iYKReEDGIVLiDQd~CRGwR~CvsgCPYKKvYfNwk------------sgKsEKCifCyPRiEaGqPtVCSeTCV 263 (513)
T COG1140 200 IYKREEDGIVLIDQDKCRGWRMCVSGCPYKKVYFNWK------------SGKSEKCIFCYPRIEAGQPTVCSETCV 263 (513)
T ss_pred ccccccCceEEeecccccchhhhhcCCCcceeEeecc------------CCCcceeEEeccccccCCCccchhhhh
Confidence 3334455556689999999999999999876544332 13456799884 4666664
No 272
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=85.54 E-value=0.34 Score=38.08 Aligned_cols=20 Identities=55% Similarity=1.373 Sum_probs=16.9
Q ss_pred CccCCcCcccchhccccccc
Q psy4925 96 DMTKCIYCGFCQEACPVDAI 115 (160)
Q Consensus 96 ~~~~C~~Cg~C~~~CP~~ai 115 (160)
+...|+.||.|..+||..+.
T Consensus 150 ~~~~CI~CG~C~~~CP~~~~ 169 (279)
T PRK12576 150 KFAQCIWCGLCVSACPVVAI 169 (279)
T ss_pred cchhCcccCcccccCCCccc
Confidence 44689999999999998754
No 273
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=85.21 E-value=0.34 Score=37.53 Aligned_cols=20 Identities=40% Similarity=0.835 Sum_probs=16.3
Q ss_pred CccCCcCcccchhccccccc
Q psy4925 96 DMTKCIYCGFCQEACPVDAI 115 (160)
Q Consensus 96 ~~~~C~~Cg~C~~~CP~~ai 115 (160)
....|+.||.|.++||.-..
T Consensus 140 ~~~~CI~CG~C~s~CPv~~~ 159 (251)
T PRK12386 140 EFRKCIECFLCQNVCHVVRD 159 (251)
T ss_pred chhhcccCCcccCcCCcccc
Confidence 44569999999999996643
No 274
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=84.33 E-value=1 Score=34.60 Aligned_cols=20 Identities=35% Similarity=0.879 Sum_probs=16.3
Q ss_pred CccCCcCcccchhccccccc
Q psy4925 96 DMTKCIYCGFCQEACPVDAI 115 (160)
Q Consensus 96 ~~~~C~~Cg~C~~~CP~~ai 115 (160)
....|+.||.|..+||+-..
T Consensus 142 ~~~~CI~CG~C~s~CP~~~~ 161 (235)
T PRK12575 142 GLYECILCACCSTACPSYWW 161 (235)
T ss_pred hhhhCcccccccccccCccc
Confidence 44569999999999997644
No 275
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=83.41 E-value=0.59 Score=41.03 Aligned_cols=19 Identities=26% Similarity=0.772 Sum_probs=15.8
Q ss_pred cccCccCCcCcccchhccc
Q psy4925 93 YDIDMTKCIYCGFCQEACP 111 (160)
Q Consensus 93 ~~~~~~~C~~Cg~C~~~CP 111 (160)
+..|.++|+.||.|+.+|.
T Consensus 611 i~~D~~kCI~CgrCv~~C~ 629 (652)
T PRK12814 611 IRFEREKCVDCGICVRTLE 629 (652)
T ss_pred eEeccccccCchHHHHHHH
Confidence 5568999999999996663
No 276
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=83.35 E-value=0.51 Score=39.44 Aligned_cols=21 Identities=33% Similarity=0.948 Sum_probs=17.7
Q ss_pred cCccCCcCcccchhccccccc
Q psy4925 95 IDMTKCIYCGFCQEACPVDAI 115 (160)
Q Consensus 95 ~~~~~C~~Cg~C~~~CP~~ai 115 (160)
.....|+.||.|.++||.+.+
T Consensus 360 ~~~~~Ci~Cg~C~~vCP~~l~ 380 (435)
T TIGR01945 360 SPEKPCIRCGKCVQVCPMNLL 380 (435)
T ss_pred ccCCcCcCccchhhhCccchh
Confidence 355789999999999999854
No 277
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=82.72 E-value=0.52 Score=38.54 Aligned_cols=22 Identities=36% Similarity=0.936 Sum_probs=18.0
Q ss_pred cCccCCcCcccchhcccccccc
Q psy4925 95 IDMTKCIYCGFCQEACPVDAIV 116 (160)
Q Consensus 95 ~~~~~C~~Cg~C~~~CP~~ai~ 116 (160)
.....|+.||.|..+||+-.+.
T Consensus 4 ~~~~~Ci~Cg~C~~~CP~~~~~ 25 (396)
T PRK11168 4 TSFDSCIKCTVCTTACPVARVN 25 (396)
T ss_pred cchhhcCCCCCCCccCCCcccC
Confidence 3456799999999999988653
No 278
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=82.61 E-value=0.57 Score=43.15 Aligned_cols=20 Identities=30% Similarity=0.903 Sum_probs=17.5
Q ss_pred cCccCCcCc----ccchhcccccc
Q psy4925 95 IDMTKCIYC----GFCQEACPVDA 114 (160)
Q Consensus 95 ~~~~~C~~C----g~C~~~CP~~a 114 (160)
.+..+|.+| |.|+++||.+|
T Consensus 883 ~~~~rC~~C~~~C~~C~~vCP~~A 906 (1019)
T PRK09853 883 QEAARCLECNYVCEKCVDVCPNRA 906 (1019)
T ss_pred ccccccCCcccccchhhhhCCccc
Confidence 355689999 99999999999
No 279
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=82.60 E-value=0.4 Score=36.93 Aligned_cols=17 Identities=24% Similarity=0.741 Sum_probs=15.1
Q ss_pred ccccchhhcHHhchhcc
Q psy4925 59 ERCIACKLCEAICPAQA 75 (160)
Q Consensus 59 ~~Ci~Cg~Cv~~CP~~~ 75 (160)
..|+.|+.|..+||.+.
T Consensus 203 ~~C~~C~~C~~vCP~~I 219 (244)
T PRK12385 203 WSCTFVGYCSEVCPKHV 219 (244)
T ss_pred hhCcCcccccccCCCCC
Confidence 48999999999999873
No 280
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=82.44 E-value=0.48 Score=36.41 Aligned_cols=19 Identities=37% Similarity=1.067 Sum_probs=15.5
Q ss_pred CccCCcCcccchhcccccc
Q psy4925 96 DMTKCIYCGFCQEACPVDA 114 (160)
Q Consensus 96 ~~~~C~~Cg~C~~~CP~~a 114 (160)
....|+.||.|..+||.-.
T Consensus 147 ~~~~CI~Cg~C~saCP~~~ 165 (239)
T PRK13552 147 ELDRCIECGCCVAACGTKQ 165 (239)
T ss_pred chhhccccchhHhhCCCCc
Confidence 4456999999999999653
No 281
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=82.42 E-value=0.47 Score=39.64 Aligned_cols=19 Identities=47% Similarity=1.130 Sum_probs=16.1
Q ss_pred cCccCCcCcccchhccccc
Q psy4925 95 IDMTKCIYCGFCQEACPVD 113 (160)
Q Consensus 95 ~~~~~C~~Cg~C~~~CP~~ 113 (160)
.+...|+.||.|..+||+-
T Consensus 290 ~e~~~CIrCG~C~~~CPvy 308 (432)
T TIGR00273 290 REVLACIRCGACQNECPVY 308 (432)
T ss_pred hhHhhCCCCCCccccCcch
Confidence 3567899999999999964
No 282
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=81.90 E-value=0.54 Score=36.97 Aligned_cols=17 Identities=35% Similarity=0.987 Sum_probs=14.5
Q ss_pred cCCcCcccchhcccccc
Q psy4925 98 TKCIYCGFCQEACPVDA 114 (160)
Q Consensus 98 ~~C~~Cg~C~~~CP~~a 114 (160)
..|+.||.|..+||.-.
T Consensus 187 ~~CI~CG~C~saCPv~~ 203 (276)
T PLN00129 187 YECILCACCSTSCPSYW 203 (276)
T ss_pred hhCccccccccccCCCc
Confidence 36999999999999653
No 283
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=81.25 E-value=0.48 Score=36.13 Aligned_cols=17 Identities=29% Similarity=0.675 Sum_probs=15.1
Q ss_pred ccccchhhcHHhchhcc
Q psy4925 59 ERCIACKLCEAICPAQA 75 (160)
Q Consensus 59 ~~Ci~Cg~Cv~~CP~~~ 75 (160)
..|+.||.|..+||.+.
T Consensus 198 ~~C~~Cg~C~~~CP~gi 214 (232)
T PRK05950 198 FRCHTIMNCVEVCPKGL 214 (232)
T ss_pred ccCcCcCCcCccccCCC
Confidence 57999999999999864
No 284
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=81.11 E-value=0.55 Score=37.14 Aligned_cols=20 Identities=20% Similarity=0.472 Sum_probs=16.7
Q ss_pred cccCccCCcCcccchhcccc
Q psy4925 93 YDIDMTKCIYCGFCQEACPV 112 (160)
Q Consensus 93 ~~~~~~~C~~Cg~C~~~CP~ 112 (160)
+..+..+|+.|+.|+.+|..
T Consensus 207 i~~D~nKCIlCgRCVRaC~E 226 (297)
T PTZ00305 207 TRVVLNRCIHCTRCVRFLNE 226 (297)
T ss_pred eeecCCcCcCccHHHHHHHH
Confidence 34578899999999999963
No 285
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=81.03 E-value=0.44 Score=39.44 Aligned_cols=26 Identities=19% Similarity=0.478 Sum_probs=20.8
Q ss_pred cCCCccccccchhhcHHhchhccccch
Q psy4925 53 RYPSGEERCIACKLCEAICPAQAITIE 79 (160)
Q Consensus 53 ~~~~~~~~Ci~Cg~Cv~~CP~~~i~~~ 79 (160)
.+.++.++|+.|+.|+.+||. |+...
T Consensus 266 ~~~id~~~C~~Cm~Ci~~~p~-a~~~g 291 (402)
T TIGR02064 266 ELSIDNRECVRCMHCINKMPK-ALHPG 291 (402)
T ss_pred eEEEcchhcCcCccccccCcc-cccCC
Confidence 455678899999999999997 56543
No 286
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=80.68 E-value=0.81 Score=35.08 Aligned_cols=25 Identities=32% Similarity=0.772 Sum_probs=21.2
Q ss_pred cCcc-CCcCcccchhcccccccccCC
Q psy4925 95 IDMT-KCIYCGFCQEACPVDAIVEGP 119 (160)
Q Consensus 95 ~~~~-~C~~Cg~C~~~CP~~ai~~~~ 119 (160)
++.+ .|++|+.|.+.||+.||....
T Consensus 186 l~qg~~C~G~~TC~A~CP~~ai~c~G 211 (247)
T COG1941 186 LEQGLPCMGCGTCAASCPSRAIPCRG 211 (247)
T ss_pred ecCCCcccCchhhhccCCccCCcccC
Confidence 3444 799999999999999999874
No 287
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=80.19 E-value=0.99 Score=33.54 Aligned_cols=20 Identities=30% Similarity=0.903 Sum_probs=17.0
Q ss_pred CccCCcCcccchhccccccc
Q psy4925 96 DMTKCIYCGFCQEACPVDAI 115 (160)
Q Consensus 96 ~~~~C~~Cg~C~~~CP~~ai 115 (160)
....|..||.|...||.+-.
T Consensus 37 ~l~~C~QCG~CT~sCPs~r~ 56 (195)
T COG1150 37 YLEGCYQCGTCTGSCPSGRF 56 (195)
T ss_pred hHhHhhccCcccCCCCCccc
Confidence 35669999999999999954
No 288
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=80.18 E-value=0.6 Score=37.59 Aligned_cols=19 Identities=32% Similarity=0.945 Sum_probs=15.7
Q ss_pred ccCCcCcccchhccccccc
Q psy4925 97 MTKCIYCGFCQEACPVDAI 115 (160)
Q Consensus 97 ~~~C~~Cg~C~~~CP~~ai 115 (160)
...|+.||.|..+||.-..
T Consensus 151 ~~~Ci~CG~C~s~CP~~~~ 169 (329)
T PRK12577 151 TGNCILCGACYSECNAREV 169 (329)
T ss_pred hhhCcccCcccccCCCCCc
Confidence 3469999999999997643
No 289
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=79.52 E-value=0.66 Score=35.57 Aligned_cols=20 Identities=40% Similarity=1.062 Sum_probs=16.4
Q ss_pred CccCCcCcccchhccccccc
Q psy4925 96 DMTKCIYCGFCQEACPVDAI 115 (160)
Q Consensus 96 ~~~~C~~Cg~C~~~CP~~ai 115 (160)
....|+.||.|..+||.-..
T Consensus 140 ~~~~CI~Cg~C~s~CP~~~~ 159 (234)
T COG0479 140 ELSECILCGCCTAACPSIWW 159 (234)
T ss_pred hhhhccccchhhhhCCcccc
Confidence 45679999999999996643
No 290
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=77.59 E-value=1.2 Score=36.35 Aligned_cols=21 Identities=33% Similarity=0.898 Sum_probs=17.2
Q ss_pred ccccccchhhcHHhchhccccc
Q psy4925 57 GEERCIACKLCEAICPAQAITI 78 (160)
Q Consensus 57 ~~~~Ci~Cg~Cv~~CP~~~i~~ 78 (160)
+.+.|+.||.|...||.. +++
T Consensus 349 ~as~CieCgqCl~~CPq~-l~I 369 (391)
T COG1453 349 KASDCIECGQCLEKCPQH-LDI 369 (391)
T ss_pred cccccchhhhhhhcCCCc-CcH
Confidence 367899999999999975 443
No 291
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=76.53 E-value=1.1 Score=36.79 Aligned_cols=18 Identities=39% Similarity=1.012 Sum_probs=15.2
Q ss_pred ccCCcCcccchhcccccc
Q psy4925 97 MTKCIYCGFCQEACPVDA 114 (160)
Q Consensus 97 ~~~C~~Cg~C~~~CP~~a 114 (160)
...|+.||.|.++||+-.
T Consensus 4 ~~~Ci~Cg~C~~~Cp~~~ 21 (397)
T TIGR03379 4 FESCIKCTVCTVYCPVAK 21 (397)
T ss_pred hhhCCCCCCCcccCcCcc
Confidence 357999999999999753
No 292
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=75.71 E-value=1.1 Score=36.84 Aligned_cols=18 Identities=39% Similarity=1.204 Sum_probs=15.6
Q ss_pred cccccchhhcHHhchhcc
Q psy4925 58 EERCIACKLCEAICPAQA 75 (160)
Q Consensus 58 ~~~Ci~Cg~Cv~~CP~~~ 75 (160)
...|..|+.|..+||.+.
T Consensus 72 ~~~C~~C~~C~~~CP~~v 89 (407)
T PRK11274 72 LDRCLTCRNCETTCPSGV 89 (407)
T ss_pred cccCccccchhhhCCCCC
Confidence 357999999999999863
No 293
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=75.15 E-value=0.94 Score=38.51 Aligned_cols=18 Identities=33% Similarity=0.971 Sum_probs=15.5
Q ss_pred ccccccchhhcHHhchhc
Q psy4925 57 GEERCIACKLCEAICPAQ 74 (160)
Q Consensus 57 ~~~~Ci~Cg~Cv~~CP~~ 74 (160)
..-.||.||.|..+||++
T Consensus 402 ~l~dCIECg~Ca~vCPs~ 419 (529)
T COG4656 402 NLLDCIECGACAYVCPSN 419 (529)
T ss_pred HhhhhhhhCcchhcCCCC
Confidence 345799999999999986
No 294
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=75.08 E-value=0.55 Score=39.48 Aligned_cols=18 Identities=39% Similarity=1.086 Sum_probs=15.5
Q ss_pred ccccccchh--hcHHhchhc
Q psy4925 57 GEERCIACK--LCEAICPAQ 74 (160)
Q Consensus 57 ~~~~Ci~Cg--~Cv~~CP~~ 74 (160)
+.++|+.|+ -|..+||.+
T Consensus 38 ~~~~c~~c~~~~C~~~CP~~ 57 (467)
T TIGR01318 38 QADRCLYCGNPYCEWKCPVH 57 (467)
T ss_pred HHHhcccCCCccccccCCCC
Confidence 357999998 699999976
No 295
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=74.73 E-value=1.1 Score=39.98 Aligned_cols=18 Identities=33% Similarity=1.025 Sum_probs=16.2
Q ss_pred cccccchhhcHHhchhcc
Q psy4925 58 EERCIACKLCEAICPAQA 75 (160)
Q Consensus 58 ~~~Ci~Cg~Cv~~CP~~~ 75 (160)
...|+.|+.|+.+||.++
T Consensus 402 ~~~Ct~CG~C~evCP~gI 419 (731)
T cd01916 402 FDQCVGCGRCEQECPKEI 419 (731)
T ss_pred HhhhhhhhHHhhhCCCCC
Confidence 468999999999999875
No 296
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=74.32 E-value=1.2 Score=39.87 Aligned_cols=18 Identities=39% Similarity=1.174 Sum_probs=16.0
Q ss_pred cccccchhhcHHhchhcc
Q psy4925 58 EERCIACKLCEAICPAQA 75 (160)
Q Consensus 58 ~~~Ci~Cg~Cv~~CP~~~ 75 (160)
...|+.||.|+.+||++.
T Consensus 441 ~~~Ct~CG~CeeVCPtgI 458 (781)
T PRK00941 441 YDKCIGCGRCEQVCPKNI 458 (781)
T ss_pred hhhccchhHHhhhCCCCC
Confidence 468999999999999874
No 297
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=74.25 E-value=0.98 Score=40.36 Aligned_cols=17 Identities=53% Similarity=1.245 Sum_probs=15.4
Q ss_pred cccccchhhcHHhchhc
Q psy4925 58 EERCIACKLCEAICPAQ 74 (160)
Q Consensus 58 ~~~Ci~Cg~Cv~~CP~~ 74 (160)
.+.|+.||.|+.+||.+
T Consensus 436 ~d~C~~CG~C~evCP~g 452 (784)
T TIGR00314 436 EEQCYACGRCEQACPKN 452 (784)
T ss_pred HhhhhhhhHHhccCCCC
Confidence 45899999999999986
No 298
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=73.97 E-value=1.2 Score=40.86 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=15.9
Q ss_pred ccccccchhh--c------------HHhchhccc
Q psy4925 57 GEERCIACKL--C------------EAICPAQAI 76 (160)
Q Consensus 57 ~~~~Ci~Cg~--C------------v~~CP~~~i 76 (160)
+..+|..|+. | +..||.+..
T Consensus 186 ea~RC~~C~~p~C~~~~~~~~~~~~~~~CP~~~~ 219 (944)
T PRK12779 186 EVMRDKQCDDKPCELGVLVQGKAEPKGGCPVKIH 219 (944)
T ss_pred HHHHhcCCCCCCCCCCcccccccCcCCCCcCCCc
Confidence 4679999995 9 689998643
No 299
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=73.39 E-value=1.4 Score=37.07 Aligned_cols=19 Identities=16% Similarity=0.239 Sum_probs=16.2
Q ss_pred CccCCcCcccchhcccccc
Q psy4925 96 DMTKCIYCGFCQEACPVDA 114 (160)
Q Consensus 96 ~~~~C~~Cg~C~~~CP~~a 114 (160)
....|+.||.|+++||.+-
T Consensus 372 ~~~~CI~Cg~C~~vCP~~L 390 (448)
T PRK05352 372 SERAMVPIGNYERVMPLDI 390 (448)
T ss_pred CCcceeecCcHhhcCCCCC
Confidence 3458999999999999863
No 300
>KOG3049|consensus
Probab=73.36 E-value=0.31 Score=36.83 Aligned_cols=54 Identities=22% Similarity=0.594 Sum_probs=30.7
Q ss_pred cccchhhcHHhchhcc---------------ccchhhhhcCCCc-cccc--cccCccCCcCcccchhccccc
Q psy4925 60 RCIACKLCEAICPAQA---------------ITIEAEERADGSR-RTTR--YDIDMTKCIYCGFCQEACPVD 113 (160)
Q Consensus 60 ~Ci~Cg~Cv~~CP~~~---------------i~~~~~~~~~~~~-~~~~--~~~~~~~C~~Cg~C~~~CP~~ 113 (160)
.||.|.-|...||... .+...+.+.+... +... -.+..-.|..-.+|...||.+
T Consensus 193 ECILCACCsTSCPSYWWN~ekYLGPAvLmqAyRWiiDSRD~~t~eRl~~l~d~~slyrCHtImNCtrtCPKg 264 (288)
T KOG3049|consen 193 ECILCACCSTSCPSYWWNSEKYLGPAVLMQAYRWIIDSRDEATKERLAKLQDPFSLYRCHTIMNCTRTCPKG 264 (288)
T ss_pred HHHHHHHhcCCCcccccCcccccCHHHHHHHHhhhhcchhHHHHHHHHHhcCchhheehhhhhhhhhcCCCC
Confidence 5999999999999521 1111111110000 0000 112344688889999999988
No 301
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=73.31 E-value=1.4 Score=37.11 Aligned_cols=20 Identities=30% Similarity=0.858 Sum_probs=16.8
Q ss_pred CccCCcCcccchhccccccc
Q psy4925 96 DMTKCIYCGFCQEACPVDAI 115 (160)
Q Consensus 96 ~~~~C~~Cg~C~~~CP~~ai 115 (160)
....|+.||.|..+||+-..
T Consensus 131 ~~~~Ci~CG~C~~~CP~~~~ 150 (486)
T PRK06259 131 KLRGCIECLSCVSTCPARKV 150 (486)
T ss_pred CchhcccCccccccCCCCcc
Confidence 44679999999999997754
No 302
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=73.12 E-value=0.54 Score=39.47 Aligned_cols=21 Identities=29% Similarity=0.844 Sum_probs=16.5
Q ss_pred ccccccchhh--cHHhchhcccc
Q psy4925 57 GEERCIACKL--CEAICPAQAIT 77 (160)
Q Consensus 57 ~~~~Ci~Cg~--Cv~~CP~~~i~ 77 (160)
+.++|..|+. |+.+||.+...
T Consensus 42 ~a~rc~~c~~~~C~~~CP~~~~~ 64 (471)
T PRK12810 42 QAARCMDCGIPFCHWGCPVHNYI 64 (471)
T ss_pred HHHhccCCCCCcccccCCCCCcH
Confidence 3568999975 99999987543
No 303
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=73.10 E-value=1.4 Score=37.04 Aligned_cols=21 Identities=19% Similarity=0.176 Sum_probs=17.1
Q ss_pred cCccCCcCcccchhccccccc
Q psy4925 95 IDMTKCIYCGFCQEACPVDAI 115 (160)
Q Consensus 95 ~~~~~C~~Cg~C~~~CP~~ai 115 (160)
.....|+-||.|+++||.+-+
T Consensus 370 ~~~~aCI~CG~C~~vCPm~L~ 390 (447)
T TIGR01936 370 GGERAMIPIGIYERVMPLDIP 390 (447)
T ss_pred CCccceeECChHhhcCCCCCC
Confidence 344579999999999998843
No 304
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=72.69 E-value=1 Score=39.87 Aligned_cols=19 Identities=32% Similarity=0.728 Sum_probs=16.4
Q ss_pred cchhhcHHhchhccccchh
Q psy4925 62 IACKLCEAICPAQAITIEA 80 (160)
Q Consensus 62 i~Cg~Cv~~CP~~~i~~~~ 80 (160)
..||.|+.+||+||+....
T Consensus 187 e~cGncv~vCPvGALt~K~ 205 (693)
T COG1034 187 ELCGNCVDVCPVGALTSKP 205 (693)
T ss_pred ccccceeeeccccccccCh
Confidence 6899999999999997543
No 305
>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion]
Probab=71.47 E-value=1.6 Score=35.42 Aligned_cols=22 Identities=36% Similarity=1.025 Sum_probs=18.2
Q ss_pred cCccCCcCcccchhcccccccc
Q psy4925 95 IDMTKCIYCGFCQEACPVDAIV 116 (160)
Q Consensus 95 ~~~~~C~~Cg~C~~~CP~~ai~ 116 (160)
.....|+.||.|.++||+-...
T Consensus 6 ~~~~~Cv~Cg~C~~~CP~~~~~ 27 (388)
T COG0247 6 ESLDKCVHCGFCTNVCPSYRAT 27 (388)
T ss_pred HHHHhcCCCCcccCcCCCcccc
Confidence 3456799999999999988665
No 306
>KOG2282|consensus
Probab=71.32 E-value=1 Score=38.41 Aligned_cols=63 Identities=22% Similarity=0.372 Sum_probs=34.1
Q ss_pred cccccchhhcHHhchhccccchhhhhcCCCccc-cccccCccCCcCcccchhcccccccccCCc
Q psy4925 58 EERCIACKLCEAICPAQAITIEAEERADGSRRT-TRYDIDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 58 ~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~-~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
+.+||+|-+|++.--.-|-.-+-...+.+.... ..+......-..-|+-++.||.||++-++-
T Consensus 174 mtrciqctrcvrfaseiagv~dlgttgrg~d~qigtyvek~f~selsgniidicpvgaltskpy 237 (708)
T KOG2282|consen 174 MTRCIQCTRCVRFASEIAGVDDLGTTGRGNDMQIGTYVEKLFMSELSGNIIDICPVGALTSKPY 237 (708)
T ss_pred HHHHHhHHHHHHHHHhhcCCcccccccCCCcchHHHHHHHHHHHhhcCCeeeeccccccccCcc
Confidence 468999999999876422221111111111100 011111112234589999999999886553
No 307
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=69.52 E-value=1.6 Score=37.73 Aligned_cols=18 Identities=39% Similarity=1.078 Sum_probs=15.8
Q ss_pred ccccccchhhcHHhchhc
Q psy4925 57 GEERCIACKLCEAICPAQ 74 (160)
Q Consensus 57 ~~~~Ci~Cg~Cv~~CP~~ 74 (160)
-.+.|++|++|.++||.+
T Consensus 436 l~d~C~~C~rCEq~Cpk~ 453 (772)
T COG1152 436 LHDVCIGCGRCEQVCPKN 453 (772)
T ss_pred HHHHhhhhhhhhhhCccc
Confidence 367899999999999965
No 308
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=67.99 E-value=1.1 Score=29.62 Aligned_cols=28 Identities=25% Similarity=0.654 Sum_probs=21.3
Q ss_pred ccCCCccccccchhhcHHhchh-ccccch
Q psy4925 52 RRYPSGEERCIACKLCEAICPA-QAITIE 79 (160)
Q Consensus 52 ~~~~~~~~~Ci~Cg~Cv~~CP~-~~i~~~ 79 (160)
..+.++-+.|..||.|--+||. +.+...
T Consensus 58 g~l~~~yegClECGTCRvlc~~~~~i~W~ 86 (99)
T COG2440 58 GKLRFDYEGCLECGTCRVLCPHSGLIQWR 86 (99)
T ss_pred CcEEEeecCeeeccceeEecCCCcceEEe
Confidence 3445567889999999999998 655443
No 309
>COG4624 Iron only hydrogenase large subunit, C-terminal domain [General function prediction only]
Probab=65.96 E-value=1.6 Score=35.92 Aligned_cols=53 Identities=17% Similarity=0.298 Sum_probs=33.7
Q ss_pred ccccchhhcHHhchh--ccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCc
Q psy4925 59 ERCIACKLCEAICPA--QAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 59 ~~Ci~Cg~Cv~~CP~--~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
+.|+.|+.| ++|-. +.+.+.. ....+.+...+|..|.=|+..||..++...+.
T Consensus 2 s~~~~~~~~-k~~~~~~g~~ei~~--------~~~~~~~~lsdc~~c~gci~s~~~~li~~~s~ 56 (411)
T COG4624 2 KPLQVVSVE-KDDETYDGKYEISS--------MLEKISISLSDCLACSGCITSCEVKAISLQSG 56 (411)
T ss_pred CccccCccc-cccccccceEEEee--------cccccccchhhhhhhhccccCChHHhhhhcch
Confidence 468899999 88863 2121110 01133456667887777998888888777665
No 310
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=63.55 E-value=2.1 Score=35.21 Aligned_cols=16 Identities=25% Similarity=0.690 Sum_probs=14.5
Q ss_pred cccccchhhcHHhchh
Q psy4925 58 EERCIACKLCEAICPA 73 (160)
Q Consensus 58 ~~~Ci~Cg~Cv~~CP~ 73 (160)
.+.|..||.|...||.
T Consensus 66 a~~C~~Cg~C~~~CP~ 81 (389)
T PRK15033 66 ANLCHNCGACLHACQY 81 (389)
T ss_pred HHhCcCcccccccCcC
Confidence 4589999999999997
No 311
>COG0348 NapH Polyferredoxin [Energy production and conversion]
Probab=60.49 E-value=3.3 Score=34.11 Aligned_cols=17 Identities=29% Similarity=0.897 Sum_probs=14.2
Q ss_pred cccchhhcHHhchhccc
Q psy4925 60 RCIACKLCEAICPAQAI 76 (160)
Q Consensus 60 ~Ci~Cg~Cv~~CP~~~i 76 (160)
.||.|+.|+.+|+....
T Consensus 246 ~CI~C~~CidaCd~~~~ 262 (386)
T COG0348 246 ECIGCGRCIDACDDDML 262 (386)
T ss_pred ccccHhhHhhhCCHHhh
Confidence 49999999999996433
No 312
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=59.46 E-value=3.1 Score=34.76 Aligned_cols=15 Identities=53% Similarity=1.406 Sum_probs=13.3
Q ss_pred cCCcCcccchhcccc
Q psy4925 98 TKCIYCGFCQEACPV 112 (160)
Q Consensus 98 ~~C~~Cg~C~~~CP~ 112 (160)
..|+-||+|...||.
T Consensus 308 L~CIRCGaC~n~CPv 322 (459)
T COG1139 308 LRCIRCGACLNHCPV 322 (459)
T ss_pred HHhhcchHhhhcChh
Confidence 469999999999994
No 313
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=58.69 E-value=1.6 Score=36.41 Aligned_cols=19 Identities=37% Similarity=1.010 Sum_probs=15.5
Q ss_pred ccccccchh--hcHHhchhcc
Q psy4925 57 GEERCIACK--LCEAICPAQA 75 (160)
Q Consensus 57 ~~~~Ci~Cg--~Cv~~CP~~~ 75 (160)
+.++|+.|+ .|+..||.+.
T Consensus 38 e~~rc~~c~~~~c~~~cp~~~ 58 (457)
T PRK11749 38 EASRCLQCKDAPCVKACPVSI 58 (457)
T ss_pred HHHHhhCCCCCcccccCCCcC
Confidence 457899995 8999999763
No 314
>KOG4258|consensus
Probab=52.92 E-value=5 Score=36.36 Aligned_cols=21 Identities=29% Similarity=0.841 Sum_probs=15.0
Q ss_pred ccccccch------hhcHHhchhcccc
Q psy4925 57 GEERCIAC------KLCEAICPAQAIT 77 (160)
Q Consensus 57 ~~~~Ci~C------g~Cv~~CP~~~i~ 77 (160)
+...|..| |+||.+||.+-..
T Consensus 248 dptaC~aCr~~y~~G~CV~~Cp~~~Y~ 274 (1025)
T KOG4258|consen 248 DPTACVACRGLYDDGVCVEACPPDYYL 274 (1025)
T ss_pred ChhHhHHhhccccCCceeccCCcchhh
Confidence 34667777 5799999976443
No 315
>PRK12831 putative oxidoreductase; Provisional
Probab=52.65 E-value=2.9 Score=35.12 Aligned_cols=19 Identities=37% Similarity=0.948 Sum_probs=15.9
Q ss_pred ccccccchh--hcHHhchhcc
Q psy4925 57 GEERCIACK--LCEAICPAQA 75 (160)
Q Consensus 57 ~~~~Ci~Cg--~Cv~~CP~~~ 75 (160)
+.++|..|+ -|..+||.+.
T Consensus 38 ea~rc~~c~~~~C~~~CP~~~ 58 (464)
T PRK12831 38 EASRCLQCKKPKCVKGCPVSI 58 (464)
T ss_pred HHHhhcCCCCCchhhhCCCCC
Confidence 467999998 6999999863
No 316
>PF14691 Fer4_20: Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; PDB: 2VDC_G 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B.
Probab=52.62 E-value=1.2 Score=30.03 Aligned_cols=18 Identities=44% Similarity=1.222 Sum_probs=11.7
Q ss_pred ccccccchh--hcHHhchhc
Q psy4925 57 GEERCIACK--LCEAICPAQ 74 (160)
Q Consensus 57 ~~~~Ci~Cg--~Cv~~CP~~ 74 (160)
+.++|+.|. .|..+||.+
T Consensus 20 ea~rC~~c~~~pC~~aCP~~ 39 (111)
T PF14691_consen 20 EASRCLQCEDPPCQAACPAH 39 (111)
T ss_dssp HHHHS---TT-HHHHTSTT-
T ss_pred HHhhccCCCCCCcccCCCCC
Confidence 457899995 899999986
No 317
>cd07031 RNAP_II_RPB3 RPB3 subunit of Eukaryotic RNA polymerase II. The eukaryotic RPB3 subunit of RNA polymerase (RNAP) II is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. At least three distinct RNAP complexes are found in eukaryotic nuclei: RNAP I, RNAP II, and RNAP III. RNAP II is responsible for the synthesis of mRNA precursor. The RPB3 subunit is similar to the bacterial RNAP alpha subunit in that it contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit which is involved in dimerization, and the other is an inserted beta sheet subdomain. The RPB3 subunit heterodimerizes with the RPB11 subunit, and together with RPB10 and RPB12, anchors the two largest subunits, RPB1 and RPB2, and stabilizes their association.
Probab=50.24 E-value=5 Score=31.33 Aligned_cols=39 Identities=23% Similarity=0.113 Sum_probs=28.6
Q ss_pred CccCCcCcccchhccc--ccccccC---Ccccccccchhhhhcc
Q psy4925 96 DMTKCIYCGFCQEACP--VDAIVEG---PNFEFSTESHEELLYN 134 (160)
Q Consensus 96 ~~~~C~~Cg~C~~~CP--~~ai~~~---~~~~~~~~~~~~~~~~ 134 (160)
+...|+.|..|.+.|+ .+.+.+. ++|.|..|+.|.+...
T Consensus 198 ~~~~c~~c~~c~~~~~~~~~~v~i~~~~~~fiF~VES~Gsl~p~ 241 (265)
T cd07031 198 DKEWPKSENACIEEPPEKDALFDIDAKPDKFYFNVESTGALPPE 241 (265)
T ss_pred ccccCchhHHHhhcccccCCceEEEeeCCEEEEEEEecCCCCHH
Confidence 5578999999999984 4556654 5588888888765443
No 318
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=50.05 E-value=3.7 Score=34.31 Aligned_cols=17 Identities=41% Similarity=1.118 Sum_probs=14.6
Q ss_pred cccccchh----hcHHhchhc
Q psy4925 58 EERCIACK----LCEAICPAQ 74 (160)
Q Consensus 58 ~~~Ci~Cg----~Cv~~CP~~ 74 (160)
.++|..|. -|..+||.+
T Consensus 25 a~rc~~c~~~~~~C~~~CP~~ 45 (449)
T TIGR01316 25 AQRCLNCKDATKPCIKGCPVH 45 (449)
T ss_pred HhhCcCccCCCCChhhhCCCC
Confidence 47899997 699999976
No 319
>KOG2415|consensus
Probab=48.90 E-value=9.4 Score=32.25 Aligned_cols=49 Identities=24% Similarity=0.421 Sum_probs=33.2
Q ss_pred hhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccc
Q psy4925 65 KLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 116 (160)
Q Consensus 65 g~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~ 116 (160)
|.=.+.||+++.....+..+ ....++.++...|+.|..|--.=|.+.|.
T Consensus 558 gpE~rfCPAgVYEyV~dE~~---~~~krlqINaQNCiHCKtCDIKdP~QnI~ 606 (621)
T KOG2415|consen 558 GPESRFCPAGVYEYVPDEAG---PVGKRLQINAQNCIHCKTCDIKDPKQNIN 606 (621)
T ss_pred ChhhccCCccceeecccccC---CCcceEEEccccceecccccccCcccCce
Confidence 44457799998765433211 12226789999999999998766766654
No 320
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=48.85 E-value=3 Score=37.24 Aligned_cols=18 Identities=39% Similarity=0.975 Sum_probs=15.1
Q ss_pred ccccccchh--hcHHhchhc
Q psy4925 57 GEERCIACK--LCEAICPAQ 74 (160)
Q Consensus 57 ~~~~Ci~Cg--~Cv~~CP~~ 74 (160)
+.++|+.|+ .|+.+||.+
T Consensus 327 ea~rC~~c~~~~C~~~Cp~~ 346 (752)
T PRK12778 327 EAKRCLDCKNPGCVEGCPVG 346 (752)
T ss_pred HHHHhhcCCCCcccccCcCC
Confidence 357999998 699999976
No 321
>PF04885 Stig1: Stigma-specific protein, Stig1; InterPro: IPR006969 This family represents the Stig1 cysteine rich plant protein.The tobacco stigma-specific gene, STIG1 is developmentally regulated and expressed specifically in the stigmatic secretory zone. Pistils of transgenic STIG1-barnase tobacco plants undergo normal development, but lack the stigmatic secretory zone and are female sterile. Pollen grains are unable to penetrate the surface of the ablated pistils. Application of stigmatic exudate from wild-type pistils to the ablated surface increases the efficiency of pollen tube germination and growth and restores the capacity of pollen tubes to penetrate the style []. The function of STIG1 is unknown.
Probab=46.33 E-value=9.3 Score=26.82 Aligned_cols=41 Identities=24% Similarity=0.597 Sum_probs=23.7
Q ss_pred chhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccc
Q psy4925 63 ACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDA 114 (160)
Q Consensus 63 ~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~a 114 (160)
.||.|-..||.+..--... -+.+..+ =..||.|-..||.+.
T Consensus 86 nCG~Cg~~C~~g~~cC~G~----------Cvd~~~d-~~~CG~Cg~~C~~G~ 126 (136)
T PF04885_consen 86 NCGACGNKCPYGQTCCGGQ----------CVDLNSD-PRHCGACGNKCPPGQ 126 (136)
T ss_pred ccHhhcCCCCCCceecCCE----------eECCCCC-ccccCCCCCcCCCcC
Confidence 5788888898764332110 1112111 125788888998764
No 322
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=45.54 E-value=6.4 Score=32.30 Aligned_cols=18 Identities=22% Similarity=0.554 Sum_probs=15.6
Q ss_pred cccccchhhcHHhchhcc
Q psy4925 58 EERCIACKLCEAICPAQA 75 (160)
Q Consensus 58 ~~~Ci~Cg~Cv~~CP~~~ 75 (160)
.+.|..|+.|..+||..+
T Consensus 47 a~lChnC~~C~~~CPy~p 64 (372)
T TIGR02484 47 AHLCHDCQSCWHDCQYAP 64 (372)
T ss_pred HHHCcCcccccccCcCCC
Confidence 478999999999999843
No 323
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=43.78 E-value=5.8 Score=33.50 Aligned_cols=17 Identities=35% Similarity=1.021 Sum_probs=14.6
Q ss_pred cccccchh-hcHHhchhc
Q psy4925 58 EERCIACK-LCEAICPAQ 74 (160)
Q Consensus 58 ~~~Ci~Cg-~Cv~~CP~~ 74 (160)
.++|..|+ .|...||..
T Consensus 22 a~rCl~C~~~C~~~cp~~ 39 (457)
T COG0493 22 AARCLDCGDPCITGCPVH 39 (457)
T ss_pred HHHHHcCCCccccCCcCC
Confidence 57899999 599999975
No 324
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=42.85 E-value=6.8 Score=36.90 Aligned_cols=20 Identities=20% Similarity=0.459 Sum_probs=17.6
Q ss_pred CCCccccccchhhcHH-hchh
Q psy4925 54 YPSGEERCIACKLCEA-ICPA 73 (160)
Q Consensus 54 ~~~~~~~Ci~Cg~Cv~-~CP~ 73 (160)
..+|.+.|++|+.|++ .||.
T Consensus 657 ~~Id~s~Cn~~~~C~~G~CPs 677 (1159)
T PRK13030 657 RRIDQSSCNKDFSCVNGFCPS 677 (1159)
T ss_pred EEECHHHCCCccccccCCCCC
Confidence 4578889999999999 9995
No 325
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=40.48 E-value=5.1 Score=37.16 Aligned_cols=19 Identities=53% Similarity=1.059 Sum_probs=15.4
Q ss_pred ccccccchh--hcHHhchhcc
Q psy4925 57 GEERCIACK--LCEAICPAQA 75 (160)
Q Consensus 57 ~~~~Ci~Cg--~Cv~~CP~~~ 75 (160)
+.++|+.|+ .|..+||.+.
T Consensus 329 ea~rC~~c~~~~C~~~CP~~~ 349 (1006)
T PRK12775 329 EAERCIQCAKPTCIAGCPVQI 349 (1006)
T ss_pred HHHhccCCCCccccCCCCCCC
Confidence 346899987 7999999863
No 326
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=40.13 E-value=8 Score=36.43 Aligned_cols=20 Identities=20% Similarity=0.443 Sum_probs=17.6
Q ss_pred CCCccccccchhhcHH-hchh
Q psy4925 54 YPSGEERCIACKLCEA-ICPA 73 (160)
Q Consensus 54 ~~~~~~~Ci~Cg~Cv~-~CP~ 73 (160)
..+|.+.|++|+.|++ .||.
T Consensus 671 ~~Idqs~Cn~d~sC~~G~CPs 691 (1165)
T PRK09193 671 RRIDQSSCNKDFSCLKGFCPS 691 (1165)
T ss_pred EEECHhHCCCccccccCCCCC
Confidence 4578889999999999 9995
No 327
>KOG1025|consensus
Probab=38.85 E-value=9.9 Score=34.82 Aligned_cols=34 Identities=29% Similarity=0.734 Sum_probs=20.5
Q ss_pred hhcHHhchhccccchhhhhcCCCccccccccCccCCcCc-ccchhcccc
Q psy4925 65 KLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYC-GFCQEACPV 112 (160)
Q Consensus 65 g~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~C-g~C~~~CP~ 112 (160)
|.||++||.+-...+. .....|.-| |.|..+|+.
T Consensus 295 ~sCVRaCp~~~~e~~~--------------~g~~~Ce~C~~~CpK~C~g 329 (1177)
T KOG1025|consen 295 GSCVRACPDDKMEVEE--------------NGVRMCEKCRGPCPKACTG 329 (1177)
T ss_pred CceeeecCCcccchhc--------------cCceeeeecCCCCcccccc
Confidence 5677777765443322 233447777 478888873
No 328
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=38.04 E-value=9.2 Score=36.09 Aligned_cols=20 Identities=20% Similarity=0.467 Sum_probs=17.6
Q ss_pred CCCccccccchhhcHH-hchh
Q psy4925 54 YPSGEERCIACKLCEA-ICPA 73 (160)
Q Consensus 54 ~~~~~~~Ci~Cg~Cv~-~CP~ 73 (160)
..+|.+.|.+|+.|++ .||.
T Consensus 685 ~~Idqs~Cn~d~sC~~G~CPs 705 (1186)
T PRK13029 685 RKINQSSCNKDFSCVKGFCPS 705 (1186)
T ss_pred EEECHhHCCCccccccCCCCC
Confidence 4578889999999999 9996
No 329
>KOG4258|consensus
Probab=32.31 E-value=23 Score=32.36 Aligned_cols=41 Identities=22% Similarity=0.560 Sum_probs=24.7
Q ss_pred chhhcHHhchhccccchhhhhcCCCccccccccCccCCcCc-ccchhcccccccccCC
Q psy4925 63 ACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYC-GFCQEACPVDAIVEGP 119 (160)
Q Consensus 63 ~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~C-g~C~~~CP~~ai~~~~ 119 (160)
.=|.|+.-||.|-.. ..+...|+.| |.|..+|-.++-++++
T Consensus 302 ~~~~Cv~~CPsGy~~----------------N~~~~~C~~C~g~C~~vC~~~~~tIds 343 (1025)
T KOG4258|consen 302 HAGQCVAKCPSGYKR----------------NSSSSECVKCEGPCPKVCEPGTKTIDS 343 (1025)
T ss_pred ccccchhhCCCccee----------------cCcccceeccCCCCcceeccCceEecc
Confidence 346888888876322 1123457777 5888888755444433
No 330
>PF03860 DUF326: Domain of Unknown Function (DUF326) ; InterPro: IPR005560 This entry is a small cysteine-rich repeat. The cysteines mostly follow a C-X(2)-C-X(3)-C-X(2)-C-X(3) pattern, though they often appear at other positions in the repeat as well [].; PDB: 3KAV_C 3KAW_C.
Probab=31.96 E-value=11 Score=17.89 Aligned_cols=13 Identities=31% Similarity=1.122 Sum_probs=7.7
Q ss_pred cccc-hhhcHHhch
Q psy4925 60 RCIA-CKLCEAICP 72 (160)
Q Consensus 60 ~Ci~-Cg~Cv~~CP 72 (160)
.|+. |..|+.+|-
T Consensus 7 ~Ca~aC~~Ca~~C~ 20 (23)
T PF03860_consen 7 ECAEACRECAEACR 20 (23)
T ss_dssp HHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHH
Confidence 3553 667777664
No 331
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=31.73 E-value=7.4 Score=32.92 Aligned_cols=19 Identities=32% Similarity=0.910 Sum_probs=15.7
Q ss_pred ccccccchhh--cHH--hchhcc
Q psy4925 57 GEERCIACKL--CEA--ICPAQA 75 (160)
Q Consensus 57 ~~~~Ci~Cg~--Cv~--~CP~~~ 75 (160)
+.++|+.|+. |.. .||.+.
T Consensus 40 ~~~rc~~c~~~~C~~~~~CP~~~ 62 (485)
T TIGR01317 40 QAARCMDCGTPFCHNDSGCPLNN 62 (485)
T ss_pred HHHhccCCCCCCCCCCCCCCCCC
Confidence 4679999984 999 999863
No 332
>COG3592 Uncharacterized conserved protein [Function unknown]
Probab=26.50 E-value=26 Score=21.56 Aligned_cols=55 Identities=13% Similarity=0.073 Sum_probs=30.1
Q ss_pred CCCccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccC
Q psy4925 54 YPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 118 (160)
Q Consensus 54 ~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~ 118 (160)
+.++...|.+-|-||+-=|.- ..+.. .+=+..+..+=..--.-++.||.|||.+.
T Consensus 18 i~fn~~iC~Hs~nCV~Gn~~v-F~~~r---------kPWI~Pd~~~ve~i~~vi~sCPSGAl~Y~ 72 (74)
T COG3592 18 IYFNTAICAHSGNCVRGNPKV-FNLGR---------KPWIMPDAVDVEEIVKVIDTCPSGALKYR 72 (74)
T ss_pred EEeccceeecccceecCCHhh-cccCC---------CCccCCCCCCHHHHHHHHHhCCchhhhee
Confidence 344677899999998766531 11110 00111222222233457888999999864
No 333
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=25.17 E-value=27 Score=26.26 Aligned_cols=15 Identities=20% Similarity=0.275 Sum_probs=11.1
Q ss_pred hhcccccccccCCcc
Q psy4925 107 QEACPVDAIVEGPNF 121 (160)
Q Consensus 107 ~~~CP~~ai~~~~~~ 121 (160)
+++||++|+......
T Consensus 4 ~~~C~~~a~~~~g~~ 18 (213)
T PRK10076 4 ADECPSGAFERIGRD 18 (213)
T ss_pred hhhchhhHHHhcCcc
Confidence 567888888876654
No 334
>KOG1025|consensus
Probab=22.98 E-value=33 Score=31.65 Aligned_cols=16 Identities=44% Similarity=1.302 Sum_probs=12.7
Q ss_pred cccccch------hhcHHhchh
Q psy4925 58 EERCIAC------KLCEAICPA 73 (160)
Q Consensus 58 ~~~Ci~C------g~Cv~~CP~ 73 (160)
...|+.| |.|+..||.
T Consensus 236 ~~dC~AC~~f~d~G~C~~~CP~ 257 (1177)
T KOG1025|consen 236 DKDCIACRKFNDSGICVETCPQ 257 (1177)
T ss_pred CCCeeeecccccCceecccCCC
Confidence 3568888 589999995
No 335
>PF09947 DUF2180: Uncharacterized protein conserved in archaea (DUF2180); InterPro: IPR017211 This group represents a predicted zinc finger protein, AF1427 type.
Probab=21.90 E-value=30 Score=21.25 Aligned_cols=13 Identities=31% Similarity=0.478 Sum_probs=8.1
Q ss_pred ccCCcCcccchhc
Q psy4925 97 MTKCIYCGFCQEA 109 (160)
Q Consensus 97 ~~~C~~Cg~C~~~ 109 (160)
...-+.|..|.++
T Consensus 53 ~l~RilC~~C~~a 65 (68)
T PF09947_consen 53 PLPRILCPECHAA 65 (68)
T ss_pred CCCeeecHHHHHH
Confidence 3355677777654
Done!