Query psy4925
Match_columns 160
No_of_seqs 119 out of 1484
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 21:21:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4925.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4925hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i9v_9 NADH-quinone oxidoreduc 99.8 4E-21 1.4E-25 139.7 5.9 140 10-149 2-147 (182)
2 3eun_A Ferredoxin; electron tr 99.4 4.2E-14 1.5E-18 90.0 2.2 55 56-120 3-63 (82)
3 2fgo_A Ferredoxin; allochromat 99.4 1.5E-13 5.1E-18 87.3 3.4 67 56-135 3-75 (82)
4 1rgv_A Ferredoxin; electron tr 99.4 1.3E-13 4.3E-18 87.3 2.0 55 56-120 3-63 (80)
5 7fd1_A FD1, protein (7-Fe ferr 99.4 2.1E-13 7.2E-18 90.8 2.6 55 56-120 3-59 (106)
6 2fdn_A Ferredoxin; electron tr 99.3 1.9E-13 6.6E-18 80.3 1.8 50 58-117 5-54 (55)
7 1xer_A Ferredoxin; electron tr 99.3 2.4E-13 8.1E-18 89.8 1.5 65 54-119 38-102 (103)
8 2zvs_A Uncharacterized ferredo 99.3 2.3E-13 7.8E-18 87.1 0.7 54 57-120 4-64 (85)
9 1dax_A Ferredoxin I; electron 99.3 1.6E-13 5.3E-18 83.1 -0.2 59 55-119 5-63 (64)
10 1f2g_A Ferredoxin II; electron 99.3 4.2E-13 1.4E-17 79.5 1.5 54 54-117 2-57 (58)
11 1h98_A Ferredoxin; electron tr 99.3 3.6E-13 1.2E-17 84.8 1.3 54 56-119 3-58 (78)
12 1bc6_A 7-Fe ferredoxin; electr 99.3 3.7E-13 1.3E-17 84.5 1.4 53 57-119 4-58 (77)
13 1jb0_C Photosystem I iron-sulf 99.3 4.6E-13 1.6E-17 84.3 0.8 62 56-119 5-66 (80)
14 1dwl_A Ferredoxin I; electron 99.3 9.3E-13 3.2E-17 78.0 1.5 53 56-117 4-58 (59)
15 1rof_A Ferredoxin; electron tr 99.2 9.4E-13 3.2E-17 78.2 0.9 55 55-118 4-59 (60)
16 2v2k_A Ferredoxin; iron, trans 99.2 1.5E-12 5.1E-17 86.4 2.0 55 56-120 3-59 (105)
17 3gyx_B Adenylylsulfate reducta 99.2 1.4E-12 4.9E-17 93.7 1.7 60 56-122 4-68 (166)
18 1jnr_B Adenylylsulfate reducta 99.2 1.9E-12 6.5E-17 91.5 2.1 60 56-122 5-69 (150)
19 1iqz_A Ferredoxin; iron-sulfer 99.2 1.7E-12 5.9E-17 82.2 -1.0 65 55-120 5-71 (81)
20 1hfe_L Protein (Fe-only hydrog 99.2 1.6E-11 5.4E-16 100.0 3.9 59 53-120 27-87 (421)
21 1sj1_A Ferredoxin; thermostabi 99.1 5.4E-12 1.8E-16 76.3 -2.0 55 55-118 5-64 (66)
22 3c8y_A Iron hydrogenase 1; dit 99.0 2.8E-11 9.7E-16 102.0 0.2 68 53-120 139-210 (574)
23 2vpz_B NRFC protein; oxidoredu 99.0 8.8E-11 3E-15 86.3 0.6 51 56-119 85-144 (195)
24 2ivf_B Ethylbenzene dehydrogen 98.9 1.5E-10 5.2E-15 92.0 1.0 57 55-119 145-203 (352)
25 2c42_A Pyruvate-ferredoxin oxi 98.9 3.8E-10 1.3E-14 102.0 1.1 67 55-121 682-767 (1231)
26 1ti6_B Pyrogallol hydroxytrans 98.8 3.9E-10 1.3E-14 87.0 0.7 54 55-120 93-159 (274)
27 3i9v_3 NADH-quinone oxidoreduc 98.8 5.2E-10 1.8E-14 97.3 1.5 65 52-120 172-240 (783)
28 2ivf_B Ethylbenzene dehydrogen 98.8 4.2E-10 1.4E-14 89.5 0.7 57 54-122 177-242 (352)
29 2vpz_B NRFC protein; oxidoredu 98.8 5.6E-10 1.9E-14 82.0 1.3 57 55-120 52-110 (195)
30 1q16_B Respiratory nitrate red 98.8 1E-09 3.4E-14 90.9 1.8 58 54-119 177-236 (512)
31 1kqf_B FDH-N beta S, formate d 98.8 8.4E-10 2.9E-14 85.9 0.9 53 57-118 96-151 (294)
32 1h0h_B Formate dehydrogenase ( 98.8 7E-10 2.4E-14 82.6 0.0 57 54-122 101-168 (214)
33 1gte_A Dihydropyrimidine dehyd 98.8 1.1E-09 3.7E-14 97.8 0.7 58 54-120 946-1007(1025)
34 1kqf_B FDH-N beta S, formate d 98.7 1.2E-09 4.2E-14 84.9 0.4 55 54-120 126-189 (294)
35 1ti6_B Pyrogallol hydroxytrans 98.7 2.7E-09 9.3E-14 82.2 2.2 54 56-119 63-118 (274)
36 3mm5_B Sulfite reductase, diss 98.7 2.2E-09 7.6E-14 85.9 1.2 57 54-118 200-259 (366)
37 1q16_B Respiratory nitrate red 98.7 3.1E-09 1.1E-13 88.0 0.4 54 54-119 210-272 (512)
38 2wdq_B Succinate dehydrogenase 98.6 3.2E-09 1.1E-13 80.0 -0.7 65 52-116 140-222 (238)
39 3or1_B Sulfite reductase beta; 98.6 1.6E-08 5.4E-13 81.5 2.4 64 54-119 211-277 (386)
40 1h0h_B Formate dehydrogenase ( 98.6 6.9E-09 2.4E-13 77.2 0.3 57 56-120 67-130 (214)
41 1kf6_B Fumarate reductase iron 98.5 2.2E-08 7.6E-13 75.6 0.8 61 54-114 141-218 (243)
42 3vr8_B Iron-sulfur subunit of 98.5 5.7E-09 2E-13 80.6 -3.1 104 10-113 131-252 (282)
43 2bs2_B Quinol-fumarate reducta 98.4 3.2E-08 1.1E-12 74.6 -0.1 59 56-114 146-222 (241)
44 2pa8_D DNA-directed RNA polyme 98.4 3.6E-08 1.2E-12 75.6 -0.2 60 62-131 174-236 (265)
45 2h88_B Succinate dehydrogenase 98.4 2.6E-08 8.7E-13 75.8 -1.1 63 52-114 149-229 (252)
46 3mm5_A Sulfite reductase, diss 98.3 1.8E-07 6.1E-12 75.9 1.6 44 64-117 260-303 (418)
47 2gmh_A Electron transfer flavo 98.3 1.7E-07 5.8E-12 79.0 0.9 57 57-118 508-571 (584)
48 3cf4_A Acetyl-COA decarboxylas 98.1 1.6E-07 5.6E-12 81.8 -2.1 59 57-117 413-472 (807)
49 3or1_A Sulfite reductase alpha 97.9 9.5E-07 3.3E-11 71.9 -0.4 41 65-115 278-318 (437)
50 3j16_B RLI1P; ribosome recycli 97.7 7.1E-06 2.4E-10 69.6 1.5 55 56-118 11-73 (608)
51 2v2k_A Ferredoxin; iron, trans 97.4 3.5E-05 1.2E-09 50.3 0.5 57 56-120 34-90 (105)
52 1rgv_A Ferredoxin; electron tr 97.2 0.00016 5.4E-09 44.8 2.0 26 95-120 3-28 (80)
53 2fgo_A Ferredoxin; allochromat 97.1 0.00018 6E-09 44.7 2.1 26 95-120 3-28 (82)
54 2fdn_A Ferredoxin; electron tr 97.1 8.8E-05 3E-09 42.5 0.5 23 56-78 32-54 (55)
55 3eun_A Ferredoxin; electron tr 97.1 0.00015 5.2E-09 45.1 1.6 26 95-120 3-28 (82)
56 1bc6_A 7-Fe ferredoxin; electr 97.1 0.00014 4.6E-09 44.7 1.0 24 56-79 34-57 (77)
57 2zvs_A Uncharacterized ferredo 97.1 0.00018 6E-09 45.1 1.4 26 95-120 3-28 (85)
58 1jb0_C Photosystem I iron-sulf 97.0 0.00017 5.8E-09 44.3 1.2 26 56-81 42-67 (80)
59 1h98_A Ferredoxin; electron tr 97.0 0.00017 5.8E-09 44.4 1.2 25 56-80 34-58 (78)
60 1xer_A Ferredoxin; electron tr 97.0 0.00016 5.4E-09 46.8 1.1 25 55-79 77-101 (103)
61 1dax_A Ferredoxin I; electron 97.0 0.0002 6.8E-09 42.2 1.3 26 93-119 4-29 (64)
62 3bk7_A ABC transporter ATP-bin 97.0 0.00023 7.8E-09 60.4 2.1 54 56-117 24-86 (607)
63 7fd1_A FD1, protein (7-Fe ferr 97.0 0.0002 6.7E-09 46.8 1.1 26 56-81 34-59 (106)
64 1dwl_A Ferredoxin I; electron 97.0 0.00027 9.2E-09 40.6 1.5 23 56-78 36-58 (59)
65 1f2g_A Ferredoxin II; electron 96.9 0.00025 8.5E-09 40.8 1.0 21 58-78 37-57 (58)
66 1rof_A Ferredoxin; electron tr 96.9 0.0003 1E-08 40.6 1.1 22 58-79 38-59 (60)
67 1iqz_A Ferredoxin; iron-sulfer 96.7 0.00048 1.6E-08 42.6 1.2 26 92-118 3-28 (81)
68 1jnr_B Adenylylsulfate reducta 96.6 0.0005 1.7E-08 48.0 1.1 25 56-80 42-66 (150)
69 3i9v_9 NADH-quinone oxidoreduc 96.5 0.00081 2.8E-08 47.8 1.5 25 95-119 48-72 (182)
70 1sj1_A Ferredoxin; thermostabi 96.3 0.001 3.5E-08 39.0 1.1 26 92-118 3-28 (66)
71 3gyx_B Adenylylsulfate reducta 96.0 0.0017 5.9E-08 46.0 0.9 27 94-120 3-34 (166)
72 1hfe_L Protein (Fe-only hydrog 95.5 0.0042 1.4E-07 50.3 1.4 27 93-119 28-54 (421)
73 3c8y_A Iron hydrogenase 1; dit 95.4 0.0037 1.3E-07 52.6 0.9 27 54-80 183-209 (574)
74 3or1_B Sulfite reductase beta; 95.4 0.004 1.4E-07 49.9 1.1 26 54-79 251-276 (386)
75 3mm5_B Sulfite reductase, diss 95.1 0.0054 1.9E-07 48.8 1.1 27 53-79 233-259 (366)
76 3j16_B RLI1P; ribosome recycli 95.1 0.0046 1.6E-07 52.4 0.6 25 56-80 50-74 (608)
77 3i9v_3 NADH-quinone oxidoreduc 95.0 0.0089 3E-07 52.0 2.0 22 60-81 219-240 (783)
78 2c42_A Pyruvate-ferredoxin oxi 94.7 0.0076 2.6E-07 54.9 1.0 25 93-117 681-705 (1231)
79 2gmh_A Electron transfer flavo 94.5 0.0077 2.6E-07 50.6 0.3 28 53-80 545-572 (584)
80 3mm5_A Sulfite reductase, diss 93.3 0.015 5.1E-07 47.1 -0.1 24 54-77 279-302 (418)
81 2wdq_B Succinate dehydrogenase 92.8 0.033 1.1E-06 41.3 1.3 21 57-77 202-222 (238)
82 1kf6_B Fumarate reductase iron 92.1 0.043 1.5E-06 40.8 1.1 19 57-75 200-218 (243)
83 2h88_B Succinate dehydrogenase 91.1 0.051 1.8E-06 40.7 0.6 22 95-116 153-174 (252)
84 2bs2_B Quinol-fumarate reducta 90.2 0.048 1.6E-06 40.5 -0.3 21 96-116 147-167 (241)
85 3or1_A Sulfite reductase alpha 90.0 0.067 2.3E-06 43.5 0.4 24 54-77 296-319 (437)
86 1gte_A Dihydropyrimidine dehyd 90.0 0.074 2.5E-06 47.6 0.7 29 92-120 945-976 (1025)
87 2pa8_D DNA-directed RNA polyme 88.9 0.1 3.4E-06 39.6 0.6 24 56-80 198-221 (265)
88 3bk7_A ABC transporter ATP-bin 88.1 0.12 4.2E-06 43.7 0.7 23 56-78 64-86 (607)
89 3cf4_A Acetyl-COA decarboxylas 83.1 0.26 9E-06 43.1 0.3 21 58-78 452-472 (807)
90 3vr8_B Iron-sulfur subunit of 81.8 0.32 1.1E-05 37.3 0.3 18 98-115 180-197 (282)
91 3kwl_A Uncharacterized protein 68.9 0.8 2.7E-05 37.9 -0.6 16 96-113 190-205 (514)
92 2vdc_G Glutamate synthase [NAD 62.7 0.5 1.7E-05 38.3 -3.0 19 57-75 18-38 (456)
93 1igr_A Insulin-like growth fac 47.4 3 0.0001 34.2 -0.7 18 60-77 217-240 (478)
94 2dtg_E Insulin receptor; IR ec 41.5 3 0.0001 36.6 -1.7 16 61-76 225-246 (897)
95 1t3q_A Quinoline 2-oxidoreduct 41.4 2.9 9.8E-05 29.2 -1.5 18 94-111 138-155 (168)
96 1n8y_C Protooncoprotein; tyros 29.4 13 0.00045 31.3 0.4 19 96-114 559-583 (608)
97 3i9v_1 NADH-quinone oxidoreduc 29.1 3 0.0001 33.9 -3.5 55 58-114 350-408 (438)
98 2kmz_A Tumor necrosis factor r 24.0 25 0.00084 19.3 0.7 12 56-67 17-28 (53)
No 1
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*
Probab=99.83 E-value=4e-21 Score=139.66 Aligned_cols=140 Identities=39% Similarity=0.757 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcccCCCccCCCCCCccCccccccCCCccccccchhhcHHhchhccccchhhhhcCC---
Q psy4925 10 FLTEIFRGFFVATGHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERADG--- 86 (160)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~--- 86 (160)
-+.+++.|++++++++|+.+.+..||.......+++++...+.....+.++|++|+.|+.+||++++.+........
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~t~~yp~~~~~~~~~~~g~~~~~~~~~d~~~Ci~C~~C~~~CP~~ai~~~~~~~~~~~~~ 81 (182)
T 3i9v_9 2 TLKALAQSLGITLKYLFSKPVTVPYPDAPVALKPRFHGRHVLTRHPNGLEKCIGCSLCAAACPAYAIYVEPAENDPENPV 81 (182)
T ss_dssp ------------------------CCSSCEECCTTCCCSEEECBCTTSCBSCCCCCHHHHHCTTCCEEEEEECCCSSSCS
T ss_pred CHHHHHHHHHHHHHHHcCCCcceECCCCCCCCCcccCCeEeeccCCCCCccCcccccchhhCCcccEEeecccccccccc
Confidence 35778999999999999999999999988888889988888877777889999999999999999987654321110
Q ss_pred ---CccccccccCccCCcCcccchhcccccccccCCcccccccchhhhhccHHHHhccCCcchHHH
Q psy4925 87 ---SRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTESHEELLYNKEKLLSNGDKWESEI 149 (160)
Q Consensus 87 ---~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (160)
........++...|++||.|+++||++||.+...++........+.+....++.....|....
T Consensus 82 ~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~ 147 (182)
T 3i9v_9 82 SAGERYAKVYEINMLRCIFCGLCEEACPTGAIVLGYDFEMADYEYSDLVYGKEDMLVDVVGTKPQR 147 (182)
T ss_dssp SSSSCEEEEEEEETTTCCCCCHHHHHCSSSCEEECSCCCCCBSSGGGGEECHHHHBTTCCSCHHHH
T ss_pred cccccccceeecCCCcCcChhChhhhCCccceEecCccccccccHHHHhcCHHHHhhcccCCCCCe
Confidence 111123356788999999999999999999999999988889888888887777666655443
No 2
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A
Probab=99.42 E-value=4.2e-14 Score=89.98 Aligned_cols=55 Identities=42% Similarity=0.893 Sum_probs=46.6
Q ss_pred CccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcc------cchhcccccccccCCc
Q psy4925 56 SGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCG------FCQEACPVDAIVEGPN 120 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg------~C~~~CP~~ai~~~~~ 120 (160)
++.++|++|+.|+.+||.+++.+.+. ...++...|++|+ .|+.+||++||.+...
T Consensus 3 ~~~~~C~~C~~C~~~CP~~ai~~~~~----------~~~i~~~~C~~C~~~~~~~~C~~~CP~~Ai~~~~~ 63 (82)
T 3eun_A 3 MITDECINCDVCEPECPNGAISQGDE----------TYVIEPSLCTECVGHYETSQCVEVCPVDAIIKDPS 63 (82)
T ss_dssp EECTTCCCCCTTGGGCTTCCEEECSS----------SEEECGGGCCTTTTTCSSCHHHHHCTTCCEEECGG
T ss_pred EeCCCCcCccchHHHCChhheEcCCC----------ceEEchhhcCCCCCCCCccHHHHhCCccceEEcCC
Confidence 35688999999999999999976432 3457788999999 9999999999998765
No 3
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}
Probab=99.39 E-value=1.5e-13 Score=87.34 Aligned_cols=67 Identities=37% Similarity=0.687 Sum_probs=51.3
Q ss_pred CccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcc------cchhcccccccccCCcccccccchh
Q psy4925 56 SGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCG------FCQEACPVDAIVEGPNFEFSTESHE 129 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg------~C~~~CP~~ai~~~~~~~~~~~~~~ 129 (160)
++.++|++|+.|+.+||+++|.+... ...++...|++|+ .|+.+||++||.+..... .+..
T Consensus 3 ~~~~~C~~C~~C~~~CP~~ai~~~~~----------~~~~~~~~C~~C~~~~~~~~C~~~CP~~Ai~~~~~~~---~~~~ 69 (82)
T 2fgo_A 3 KITDDCINCDVCEPECPNGAISQGEE----------IYVIDPNLCTECVGHYDEPQCQQVCPVDCIPLDDANV---ESKD 69 (82)
T ss_dssp CCCTTCCCCCTTGGGCTTCCEEECSS----------SEEECTTTCCTTTTTCSSCHHHHHCTTCCCCBCTTSC---CCHH
T ss_pred eeCCCCCChhhHHHHCChhccCCCCC----------eEEEEchhCccCCCcCCCCHhHhhCCcccEEccCCCc---cCHH
Confidence 35678999999999999999986432 3457888999999 999999999999866432 3445
Q ss_pred hhhccH
Q psy4925 130 ELLYNK 135 (160)
Q Consensus 130 ~~~~~~ 135 (160)
+++...
T Consensus 70 ~~~~~~ 75 (82)
T 2fgo_A 70 QLMEKY 75 (82)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554433
No 4
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1
Probab=99.37 E-value=1.3e-13 Score=87.28 Aligned_cols=55 Identities=40% Similarity=0.788 Sum_probs=46.3
Q ss_pred CccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcc------cchhcccccccccCCc
Q psy4925 56 SGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCG------FCQEACPVDAIVEGPN 120 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg------~C~~~CP~~ai~~~~~ 120 (160)
++.++|++|+.|+.+||.++|.+... ...++...|++|+ .|+++||++||.+...
T Consensus 3 ~~~~~C~~C~~C~~~CP~~ai~~~~~----------~~~~~~~~C~~C~~~~~~~~C~~~CP~~Ai~~~~~ 63 (80)
T 1rgv_A 3 YINDDCTACDACVEECPNEAITPGDP----------IYVIDPTKCSECVGAFDEPQCRLVCPADCIPDNPD 63 (80)
T ss_dssp CCCSCCCCCCTTTTTCTTCCEECCSS----------SCEECTTTCCTTTTTCSSCHHHHHCSSCCCCBCGG
T ss_pred EeCCCCcChhhHHHHcChhccCcCCC----------eeEEcchhCcCCCCcCCccHHHHhcCcccEEecCC
Confidence 35678999999999999999986532 2456788999999 9999999999998664
No 5
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=99.36 E-value=2.1e-13 Score=90.81 Aligned_cols=55 Identities=29% Similarity=0.710 Sum_probs=46.6
Q ss_pred Cccccccchh--hcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCc
Q psy4925 56 SGEERCIACK--LCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 56 ~~~~~Ci~Cg--~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
++.++|++|+ .|+.+||.+++..... ...++...|++||.|+.+||++||.+...
T Consensus 3 ~~~~~C~~C~~~~C~~~CP~~ai~~~~~----------~~~i~~~~C~~Cg~C~~~CP~~ai~~~~~ 59 (106)
T 7fd1_A 3 VVTDNCIKCKYTDCVEVCPVDCFYEGPN----------FLVIHPDECIDCALCEPECPAQAIFSEDE 59 (106)
T ss_dssp EECGGGTTTCCCHHHHHCTTCCEEECSS----------CEEECTTTCCCCCTTGGGCTTCCEEEGGG
T ss_pred ECccccCCccCcHHHHHcCccceEcCCC----------cEEECcccCCChhhhHHhCCChhhhcccc
Confidence 3568899999 9999999999876542 34577888999999999999999998765
No 6
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A
Probab=99.35 E-value=1.9e-13 Score=80.28 Aligned_cols=50 Identities=50% Similarity=1.058 Sum_probs=42.4
Q ss_pred cccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhccccccccc
Q psy4925 58 EERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVE 117 (160)
Q Consensus 58 ~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~ 117 (160)
.++|++||.|+.+||.+++.+.+. ...++...|++||.|+.+||++||.+
T Consensus 5 ~~~C~~C~~C~~~CP~~ai~~~~~----------~~~~~~~~C~~C~~C~~~CP~~ai~~ 54 (55)
T 2fdn_A 5 NEACISCGACEPECPVNAISSGDD----------RYVIDADTCIDCGACAGVCPVDAPVQ 54 (55)
T ss_dssp CTTCCCCCTTGGGCTTCCEECCSS----------SCEECTTTCCCCCHHHHTCTTCCEEE
T ss_pred cccCcChhhHHHHCCccccCcCCC----------EEEeccccCcChhChHHHccccceec
Confidence 467999999999999999876532 23567889999999999999999875
No 7
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Probab=99.33 E-value=2.4e-13 Score=89.84 Aligned_cols=65 Identities=25% Similarity=0.479 Sum_probs=47.6
Q ss_pred CCCccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCC
Q psy4925 54 YPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 119 (160)
Q Consensus 54 ~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 119 (160)
+.++.++|++||.|+.+||.+++.+....... ........++...|++||.|+.+||++||.+..
T Consensus 38 ~~id~~~C~~Cg~C~~~CP~~ai~~~~~~~~~-~~~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~~ 102 (103)
T 1xer_A 38 VGVDFDLCIADGSCINACPVNVFQWYDTPGHP-ASEKKADPVNEQACIFCMACVNVCPVAAIDVKP 102 (103)
T ss_dssp EEEETTTCCCCCHHHHHCTTCCCEEEECTTCS-SCSEEEECTTGGGCCCCCHHHHHCTTCCEEECC
T ss_pred EEEehhhCCChhhHHHHcCccCeecccccCcc-ccccceeecCcccccChhhHHHhccccceEecC
Confidence 44678899999999999999998765421110 011112346778899999999999999998743
No 8
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}
Probab=99.31 E-value=2.3e-13 Score=87.13 Aligned_cols=54 Identities=39% Similarity=0.981 Sum_probs=45.9
Q ss_pred ccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcc------cchhcccc-cccccCCc
Q psy4925 57 GEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCG------FCQEACPV-DAIVEGPN 120 (160)
Q Consensus 57 ~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg------~C~~~CP~-~ai~~~~~ 120 (160)
+.++|++|+.|+.+||++++.+... ...++...|++|| .|+.+||+ +||.+...
T Consensus 4 ~~~~C~~C~~C~~~CP~~ai~~~~~----------~~~~~~~~C~~C~~~~~~~~C~~~CP~~~Ai~~~~~ 64 (85)
T 2zvs_A 4 ITKKCINCDMCEPECPNEAISMGDH----------IYEINSDKCTECVGHYETPTCQKVCPIPNTIVKDPA 64 (85)
T ss_dssp ECTTCCCCCTTTTTCTTCCEECCSS----------SCEECGGGCCTTTTTCSSCHHHHHCSSCCEEECTTS
T ss_pred eCCcCcChhHHHHHCchhccCcCCC----------ceEEeChhccCCCCcCCccHhhHhCcCCCCEEecCC
Confidence 4678999999999999999986532 3456788999999 99999999 99998765
No 9
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A
Probab=99.31 E-value=1.6e-13 Score=83.06 Aligned_cols=59 Identities=24% Similarity=0.410 Sum_probs=43.1
Q ss_pred CCccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCC
Q psy4925 55 PSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 119 (160)
Q Consensus 55 ~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 119 (160)
.++.++|++||.|+.+|| +++.++... +. ......+...|+.|+.|+++||++||.+..
T Consensus 5 ~id~~~C~~Cg~C~~~CP-~~~~~~~~~---~~--~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~~ 63 (64)
T 1dax_A 5 YVDQDECIACESCVEIAP-GAFAMDPEI---EK--AYVKDVEGASQEEVEEAMDTCPVQCIHWED 63 (64)
T ss_dssp EECSTTCCSCCHHHHHCT-TTEEECSSS---SS--EEECCGGGSCHHHHHHHHHHSSSCCEECCC
T ss_pred EEccccCCCchHHHHhCC-ccEeEcCCC---CE--EEEecCCCcchhHHHHHHHhCCHhhEeeec
Confidence 356789999999999999 887654320 11 001123367899999999999999998753
No 10
>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A
Probab=99.31 E-value=4.2e-13 Score=79.51 Aligned_cols=54 Identities=24% Similarity=0.547 Sum_probs=41.3
Q ss_pred CCCccccccchhhcHHhchhccccchhhhhcCCCccccccccC--ccCCcCcccchhccccccccc
Q psy4925 54 YPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDID--MTKCIYCGFCQEACPVDAIVE 117 (160)
Q Consensus 54 ~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~--~~~C~~Cg~C~~~CP~~ai~~ 117 (160)
+.++ ++|++||.|+.+||. ++.+++.+ . ...++ ...|+.|+.|+++||++||.+
T Consensus 2 v~id-~~C~~C~~C~~~CP~-~~~~~~~~----~----~~~~~~~~~~C~~C~~C~~~CP~~Ai~~ 57 (58)
T 1f2g_A 2 IEVN-DDCMACEACVEICPD-VFEMNEEG----D----KAVVINPDSDLDCVEEAIDSCPAEAIVR 57 (58)
T ss_dssp CBCT-TTCCCCCHHHHHCTT-TEEECSSS----S----SEEESCTTCCSTHHHHHHHTCSSCCCBC
T ss_pred cEEC-CcCccchHHHHhCCc-cEEECCCC----c----EEEeCCCccchHHHHHHHhhCChhhEEe
Confidence 3467 899999999999998 56543221 0 12344 678999999999999999986
No 11
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2
Probab=99.31 E-value=3.6e-13 Score=84.79 Aligned_cols=54 Identities=35% Similarity=0.720 Sum_probs=45.2
Q ss_pred Cccccccc--hhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCC
Q psy4925 56 SGEERCIA--CKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 119 (160)
Q Consensus 56 ~~~~~Ci~--Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 119 (160)
++.++|++ ||.|+.+||.++|.+... ...++...|++||.|+.+||++||.+..
T Consensus 3 i~~~~C~~c~C~~C~~~CP~~ai~~~~~----------~~~~~~~~C~~C~~C~~~CP~~Ai~~~~ 58 (78)
T 1h98_A 3 VICEPCIGVKDQSCVEVCPVECIYDGGD----------QFYIHPEECIDCGACVPACPVNAIYPEE 58 (78)
T ss_dssp EECGGGTTTCCCHHHHHCTTCCEEECSS----------SEEECTTTCCCCCTHHHHCTTCCEEEGG
T ss_pred EEchhCCCCCcChhhhhcCccceEcCCC----------EEEECcccCCcHhHHHHhCCccceEecc
Confidence 35678999 999999999999976531 3456788999999999999999999644
No 12
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Probab=99.31 E-value=3.7e-13 Score=84.46 Aligned_cols=53 Identities=38% Similarity=0.784 Sum_probs=44.7
Q ss_pred ccccccc--hhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCC
Q psy4925 57 GEERCIA--CKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 119 (160)
Q Consensus 57 ~~~~Ci~--Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 119 (160)
+.++|++ ||.|+.+||+++|.+... ...++...|++||.|+.+||++||.+..
T Consensus 4 ~~~~C~~c~C~~C~~~Cp~~ai~~~~~----------~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 58 (77)
T 1bc6_A 4 ITEPCIGTKDASCVEVCPVDCIHEGED----------QYYIDPDVCIDCGACEAVCPVSAIYHED 58 (77)
T ss_dssp CCSTTTTCCCCSSTTTCTTCCEEECSS----------SEEECTTTCCSCCSHHHHSGGGSSEETT
T ss_pred eCccCCCCCcchhHHhcccccEEeCCC----------cEEECcccCcCccCCHhhcCccceEecC
Confidence 5678999 899999999999976431 3456888999999999999999999753
No 13
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*
Probab=99.28 E-value=4.6e-13 Score=84.30 Aligned_cols=62 Identities=21% Similarity=0.515 Sum_probs=44.9
Q ss_pred CccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCC
Q psy4925 56 SGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 119 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 119 (160)
++.++|++||.|+.+||++++.+...... .........+...|++||.|+.+||++||.+..
T Consensus 5 ~~~~~C~~Cg~C~~~CP~~a~~~~~~~~~--~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 66 (80)
T 1jb0_C 5 KIYDTCIGCTQCVRACPTDVLEMVPWDGC--KAGQIASSPRTEDCVGCKRCETACPTDFLSIRV 66 (80)
T ss_dssp EEETTCCCCCHHHHHCTTCCCEEEECSSS--TTSEEEECTTGGGCCCCCHHHHHCCSSSCSEEE
T ss_pred ccCCcCcChhHHHHHCCcccccccccccc--cccccccCCCCCcCcCcCChhhhCCCCccEeee
Confidence 45678999999999999999876542110 000111235677899999999999999998744
No 14
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Probab=99.26 E-value=9.3e-13 Score=77.98 Aligned_cols=53 Identities=28% Similarity=0.609 Sum_probs=40.6
Q ss_pred CccccccchhhcHHhchhccccc-hhhhhcCCCccccccc-cCccCCcCcccchhccccccccc
Q psy4925 56 SGEERCIACKLCEAICPAQAITI-EAEERADGSRRTTRYD-IDMTKCIYCGFCQEACPVDAIVE 117 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~-~~~~~~~~~~~~~~~~-~~~~~C~~Cg~C~~~CP~~ai~~ 117 (160)
++.++|++||.|+.+||. ++.+ ...+ . ... ++...|+.|+.|+.+||++||.+
T Consensus 4 i~~~~C~~C~~C~~~Cp~-~~~~~~~~~----~----~~~~~~~~~c~~C~~C~~~CP~~Ai~~ 58 (59)
T 1dwl_A 4 IDHEECIGCESCVELCPE-VFAMIDGEE----K----AMVTAPDSTAECAQDAIDACPVEAISK 58 (59)
T ss_dssp ESSCCCSSCCGGGGTSTT-TEEEEECSS----C----EEESCTTCCCGGGGTGGGGSTTCCEEE
T ss_pred EChhhCcChhHHHHHCCH-HheecCCCC----c----EEEecChhhhhHHHHHHHhCCHhhEEc
Confidence 467889999999999994 6655 2211 0 112 47788999999999999999975
No 15
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A
Probab=99.25 E-value=9.4e-13 Score=78.23 Aligned_cols=55 Identities=22% Similarity=0.523 Sum_probs=41.3
Q ss_pred CCccccccchhhcHHhchhccccchhhhhcCCCcccccccc-CccCCcCcccchhcccccccccC
Q psy4925 55 PSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDI-DMTKCIYCGFCQEACPVDAIVEG 118 (160)
Q Consensus 55 ~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~-~~~~C~~Cg~C~~~CP~~ai~~~ 118 (160)
.++.++|++||.|+.+||. ++.++..+. .... +...|..|+.|+.+||++||.+.
T Consensus 4 ~i~~~~C~~C~~C~~~Cp~-~~~~~~~~~--------~~~~~~~~~c~~C~~C~~~CP~~Ai~~~ 59 (60)
T 1rof_A 4 RVDADACIGCGVCENLCPD-VFQLGDDGK--------AKVLQPETDLPCAKDAADSCPTGAISVE 59 (60)
T ss_dssp EECTTTCCSCCSSTTTCTT-TBCCCSSSC--------CCBSCSSCCSTTHHHHHHHCTTCCEECC
T ss_pred EEchhhCCCChHHHHhCcH-HHeECCCCC--------EeecCchhhHHHHHHHHHhCCHhHEEEe
Confidence 3567889999999999996 565432210 1122 36789999999999999999874
No 16
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis}
Probab=99.25 E-value=1.5e-12 Score=86.39 Aligned_cols=55 Identities=33% Similarity=0.662 Sum_probs=45.6
Q ss_pred Cccccccch--hhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCc
Q psy4925 56 SGEERCIAC--KLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 56 ~~~~~Ci~C--g~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
++.++|++| +.|+.+||.++|.+... ...++...|++||.|+.+||++||.+...
T Consensus 3 i~~~~C~~C~c~~C~~~CP~~ai~~~~~----------~~~~~~~~C~~Cg~C~~~CP~~Ai~~~~~ 59 (105)
T 2v2k_A 3 VIAEPCVDVKDKACIEECPVDCIYEGAR----------MLYIHPDECVDCGACEPVCPVEAIYYEDD 59 (105)
T ss_dssp EECGGGTTTCCCHHHHHCTTCCEEECSS----------CEEECTTTCCCCCCSGGGCTTCCEEEGGG
T ss_pred EecccCCCCCcChhhhhcCccccCcCCC----------cEEEeCCcCcchhhHHHhCCccCEEecCC
Confidence 356789988 99999999999976432 24568889999999999999999997643
No 17
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=99.24 E-value=1.4e-12 Score=93.66 Aligned_cols=60 Identities=28% Similarity=0.680 Sum_probs=48.9
Q ss_pred Cccccccchh-----hcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCccc
Q psy4925 56 SGEERCIACK-----LCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 122 (160)
Q Consensus 56 ~~~~~Ci~Cg-----~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~~~ 122 (160)
++.++|++|+ .|+.+||.+++.++.... ..+.++...|++||.|+.+||++||.+.....
T Consensus 4 id~~~C~gC~~c~~~~C~~~CP~~ai~~~~~~~-------~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~~~~ 68 (166)
T 3gyx_B 4 VDPSKCDGCKGGEKTACMYICPNDLMILDPEEM-------KAFNQEPEACWECYSCIKICPQGAITARPYAD 68 (166)
T ss_dssp ECTTTCCCCCSSSCCHHHHHCTTSCEEEETTTT-------EEEESCGGGCCCCCHHHHHCSSCCEEECCCTT
T ss_pred EcchhcCCCCCCCcchhHHhCCccccEEecCCc-------eeEecCcccCcccChHhHhCCccceEEecccc
Confidence 5678999999 999999999998765421 12346778999999999999999999876643
No 18
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Probab=99.24 E-value=1.9e-12 Score=91.55 Aligned_cols=60 Identities=32% Similarity=0.677 Sum_probs=48.6
Q ss_pred Cccccccchh-----hcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCccc
Q psy4925 56 SGEERCIACK-----LCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 122 (160)
Q Consensus 56 ~~~~~Ci~Cg-----~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~~~ 122 (160)
++.++|++|+ .|+.+||.++|.++..+. ..+.++...|++||.|+.+||++||.+....+
T Consensus 5 vd~~~C~~C~~~~~~~C~~~CP~~ai~~~~~~~-------~~~~id~~~C~~Cg~Cv~~CP~~AI~~~~~~~ 69 (150)
T 1jnr_B 5 VNPEKCDGCKALERTACEYICPNDLMTLDKEKM-------KAYNREPDMCWECYSCVKMCPQGAIDVRGYVD 69 (150)
T ss_dssp ECTTTCCSCCSSSSCHHHHHCTTSCEEEETTTT-------EEEESCGGGCCCCCHHHHHCTTCCEEECCCTT
T ss_pred ECcccCCCCCCcccccchhhcCccCeEEecCCc-------eeeeeCcccCcCHhHHHHhCCccceEecCcch
Confidence 4678999999 999999999998754321 02457788999999999999999999876543
No 19
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*
Probab=99.16 E-value=1.7e-12 Score=82.18 Aligned_cols=65 Identities=22% Similarity=0.276 Sum_probs=43.2
Q ss_pred CCccccccchhhcHHhchhccccchhhhhcCCC--ccccccccCccCCcCcccchhcccccccccCCc
Q psy4925 55 PSGEERCIACKLCEAICPAQAITIEAEERADGS--RRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 55 ~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~--~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
.++.++|++||.|+.+|| +++.++..+..... .......++...|..|+.|+++||++||.+...
T Consensus 5 ~vd~~~CigCg~C~~~CP-~~~~~~~~g~~~~~~~~~~~~~~~~~~~c~~C~~C~~~CP~~AI~~~~~ 71 (81)
T 1iqz_A 5 IVDKETCIACGACGAAAP-DIYDYDEDGIAYVTLDDNQGIVEVPDILIDDMMDAFEGCPTDSIKVADE 71 (81)
T ss_dssp EECTTTCCCCSHHHHHCT-TTEEECTTSCEEETTTTTSSCSCCCGGGHHHHHHHHHHCTTCCEEEESS
T ss_pred EEecccCcccChhhHhCc-hheeeCCCCeEEEeccCccccCCCCHHHHHHHHHHHHhCCHhHEEEecC
Confidence 457889999999999999 67665422110000 000001223567999999999999999998653
No 20
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*
Probab=99.15 E-value=1.6e-11 Score=100.01 Aligned_cols=59 Identities=37% Similarity=0.729 Sum_probs=47.2
Q ss_pred cCCCccccccchhhcHHhchhccccchhhhhcCCCcccccccc-CccCCcCcccchhccccccccc-CCc
Q psy4925 53 RYPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDI-DMTKCIYCGFCQEACPVDAIVE-GPN 120 (160)
Q Consensus 53 ~~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~-~~~~C~~Cg~C~~~CP~~ai~~-~~~ 120 (160)
.+.++.++|++|+.|+.+||.++|...... ...+ +...|+.||.|+.+||++||.. ...
T Consensus 27 ~i~~d~~kCi~Cg~C~~~CP~~ai~~~~~~---------~~~i~~~~~C~~Cg~C~~~CP~~Ai~~~~~~ 87 (421)
T 1hfe_L 27 FVQIDEAKCIGCDTCSQYCPTAAIFGEMGE---------PHSIPHIEACINCGQCLTHCPENAIYEAQSW 87 (421)
T ss_dssp SEEECTTTCCCCCHHHHHCTTCCCBCCTTS---------CCBCCCGGGCCCCCTTGGGCTTCCEEESCCC
T ss_pred eEEECcccCCCccHHHHhcCcCceeccccc---------ceeecChhhCCchhhHHHhhCcCCccccccc
Confidence 345678899999999999999998754321 1234 7889999999999999999998 443
No 21
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A
Probab=99.06 E-value=5.4e-12 Score=76.30 Aligned_cols=55 Identities=24% Similarity=0.425 Sum_probs=39.6
Q ss_pred CCccccccchhhcHHhchhccccchhhhhcCCCccccccccC----c-cCCcCcccchhcccccccccC
Q psy4925 55 PSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDID----M-TKCIYCGFCQEACPVDAIVEG 118 (160)
Q Consensus 55 ~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~----~-~~C~~Cg~C~~~CP~~ai~~~ 118 (160)
.++.++|++||.|+.+||. ++.++..+ . ....+ . ..|..|+.|+++||++||.+.
T Consensus 5 ~id~~~C~~C~~C~~~Cp~-~~~~~~~~----~----~~~~~~~~~~~~~c~~c~~C~~~CP~~Ai~~~ 64 (66)
T 1sj1_A 5 SVDQDTCIGDAICASLCPD-VFEMNDEG----K----AQPKVEVIEDEELYNCAKEAMEACPVSAITIE 64 (66)
T ss_dssp EECTTTCCCCCHHHHHCTT-TEEECTTS----C----EEESCSCBCCHHHHHHHHHHHHHCTTCCEEEE
T ss_pred EECcccCcCchHHHHhCCc-eEEECCCC----c----eeecccCCCcHHHHHHHHHHHhhCCHhhEEEe
Confidence 3567899999999999995 77654221 1 11122 2 347889999999999999864
No 22
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=99.02 E-value=2.8e-11 Score=101.98 Aligned_cols=68 Identities=25% Similarity=0.520 Sum_probs=49.2
Q ss_pred cCCCccccccchhhcHHhchh----ccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCc
Q psy4925 53 RYPSGEERCIACKLCEAICPA----QAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 53 ~~~~~~~~Ci~Cg~Cv~~CP~----~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
.+.+|.++|++|+.|+.+||. +++.+...+............++...|++||.|+.+||++||.+...
T Consensus 139 ~i~~d~~kCi~Cg~Cv~~CP~~~~~~ai~~~~~g~~~~i~~~~~~~i~~~~Ci~Cg~Cv~~CP~gAi~~~~~ 210 (574)
T 3c8y_A 139 SLTVDRTKCLLCGRCVNACGKNTETYAMKFLNKNGKTIIGAEDEKCFDDTNCLLCGQCIIACPVAALSEKSH 210 (574)
T ss_dssp SEEEEGGGCCCCCHHHHHHHHHHSCCCSEEEEETTEEEEESGGGCCGGGSSCCCCCHHHHHCSSTTEEECCC
T ss_pred cceeCcccCcCCCCccchhCchhcCCceeeccCCccceecccccceechhhCCcchhHHHhhccCCcccccc
Confidence 445678999999999999998 78876543211000001123467789999999999999999998764
No 23
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
Probab=98.96 E-value=8.8e-11 Score=86.34 Aligned_cols=51 Identities=33% Similarity=0.787 Sum_probs=27.5
Q ss_pred CccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcc---------cchhcccccccccCC
Q psy4925 56 SGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCG---------FCQEACPVDAIVEGP 119 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg---------~C~~~CP~~ai~~~~ 119 (160)
++.++|++|+.|+.+||.+|+.+.... . ...|++|+ +|+++||++||.+..
T Consensus 85 id~~~CigC~~C~~~CP~~Ai~~~~~~------------~-~~kC~~C~~~~~~g~~p~Cv~~CP~~Ai~~g~ 144 (195)
T 2vpz_B 85 VDPKKCIACGACIAACPYDARYLHPAG------------Y-VSKCTFCAHRLEKGKVPACVETCPTYCRTFGD 144 (195)
T ss_dssp ECTTTCCCCCHHHHHCTTCCCEECTTS------------S-EECCCTTHHHHHTTCCCHHHHSCTTCCEEEEE
T ss_pred ecCCCCCCcChhHhhCCCCCeEECCCC------------C-CccCcCcchHHhCCCCchhHhhCCcccEEEec
Confidence 345556666666666665555443211 0 34566665 466666666666543
No 24
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=98.93 E-value=1.5e-10 Score=92.01 Aligned_cols=57 Identities=32% Similarity=0.528 Sum_probs=38.7
Q ss_pred CCccccccchh--hcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCC
Q psy4925 55 PSGEERCIACK--LCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 119 (160)
Q Consensus 55 ~~~~~~Ci~Cg--~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 119 (160)
.++...|++|+ .|+.+||++|+....... .+.++...|++|+.|+.+||++||.+..
T Consensus 145 ~~~~~~C~~C~~~~Cv~~CP~gAi~~~~~~g--------~v~id~~kCigCg~Cv~aCP~~Ai~~~~ 203 (352)
T 2ivf_B 145 FYLARMCNHCTNPACLAACPTGAIYKREDNG--------IVLVDQERCKGHRHCVEACPYKAIYFNP 203 (352)
T ss_dssp EEEEECCCCCSSCHHHHHCTTCCEEECTTTC--------CEEECTTTCCCCCHHHHHCTTCCEEEET
T ss_pred EECCCCCcCcCCccccccCCCCceeecCCCC--------eEEechhhcCCchHHHhhcCccceeccc
Confidence 35567899999 899999999886543211 2345666677777777777777766543
No 25
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=98.86 E-value=3.8e-10 Score=101.98 Aligned_cols=67 Identities=33% Similarity=0.639 Sum_probs=48.1
Q ss_pred CCccccccchhhcHHhchhccccch---hhhh---cCC--C------c---cccccccCccCCcCcccchhcccc--ccc
Q psy4925 55 PSGEERCIACKLCEAICPAQAITIE---AEER---ADG--S------R---RTTRYDIDMTKCIYCGFCQEACPV--DAI 115 (160)
Q Consensus 55 ~~~~~~Ci~Cg~Cv~~CP~~~i~~~---~~~~---~~~--~------~---~~~~~~~~~~~C~~Cg~C~~~CP~--~ai 115 (160)
.++.++||+|+.|+.+||.++|... .... ..+ . . ......++...|++||.|+.+||+ +||
T Consensus 682 ~~d~~kCi~Cg~Cv~vCP~~AI~~~~~~~~e~~~ap~g~~~~~~~~k~~~g~~~~~~v~~~~C~gCG~Cv~vCP~~~~AI 761 (1231)
T 2c42_A 682 QWVPENCIQCNQCAFVCPHSAILPVLAKEEELVGAPANFTALEAKGKELKGYKFRIQINTLDCMGCGNCADICPPKEKAL 761 (1231)
T ss_dssp EECTTTCCCCCHHHHHCSSCCEEEEEECGGGGTTCCTTCCCEECCSGGGTTCEEEEEECTTTCCCCCHHHHHCSSSSCSE
T ss_pred EEeCccCCchhhHHHhCCcccccccccchHHHhhCcccccccccccccccccccceeechhhCCChhHHHhhCCCCccCe
Confidence 4678999999999999999998753 1100 000 0 0 001234678899999999999999 999
Q ss_pred ccCCcc
Q psy4925 116 VEGPNF 121 (160)
Q Consensus 116 ~~~~~~ 121 (160)
.+....
T Consensus 762 ~~~~~~ 767 (1231)
T 2c42_A 762 VMQPLD 767 (1231)
T ss_dssp EEEEGG
T ss_pred EEecch
Confidence 987653
No 26
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=98.85 E-value=3.9e-10 Score=86.95 Aligned_cols=54 Identities=19% Similarity=0.213 Sum_probs=38.7
Q ss_pred CCccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCc----------c---cchhcccccccccCCc
Q psy4925 55 PSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYC----------G---FCQEACPVDAIVEGPN 120 (160)
Q Consensus 55 ~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~C----------g---~C~~~CP~~ai~~~~~ 120 (160)
.++.++|++|+.|+.+||.+++.+... ......|++| | +|+++||++||.+...
T Consensus 93 ~id~~~CigC~~C~~~CP~~Ai~~~~~------------~~~~~kC~~C~~r~~~~~~~G~~P~Cv~~CP~~Ai~~~~~ 159 (274)
T 1ti6_B 93 LIDPEKAKGKKELLDTCPYGVMYWNEE------------ENVAQKCTMCAHLLDDESWAPKMPRCAHNCGSFVYEFLKT 159 (274)
T ss_dssp EECTTTTTTCGGGGGGCSSCCCEEETT------------TTEEECCCTTHHHHTCTTCTTCSCHHHHHCSSCCEEEEEE
T ss_pred EechhhccchHHHHhhCccCCeEEEcc------------cCccccCCCchhhhhhhccCCCCcchhhhCCcCceEEcCC
Confidence 456677888888888888887765432 1245678888 7 8888888888887554
No 27
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=98.84 E-value=5.2e-10 Score=97.33 Aligned_cols=65 Identities=18% Similarity=0.209 Sum_probs=43.3
Q ss_pred ccCCCccccccchhhcHHhchh----ccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCc
Q psy4925 52 RRYPSGEERCIACKLCEAICPA----QAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 52 ~~~~~~~~~Ci~Cg~Cv~~CP~----~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
+.+.+|.++||+|++|+++||. +++.+...+ ..... ........|++||+|+++||++||..+..
T Consensus 172 p~i~~d~~~CI~C~~Cv~~C~~~~~~~~i~~~~~g--~~~~i--~~~~~~~~C~~CG~Cv~vCP~gAl~~~~~ 240 (783)
T 3i9v_3 172 PFVILDRERCIHCKRCVRYFEEVPGDEVLDFIERG--VHTFI--GTMDFGLPSGFSGNITDICPVGALLDLTA 240 (783)
T ss_dssp TTEEECTTTCCCCCHHHHHHHHTTCCCCCEECSCT--TSCCE--ECSSTTCCSTTTTTHHHHCSSSSEEEGGG
T ss_pred ccEEEchhhCCCccHHHHHhhhhcCCceeeeecCC--CccEE--ccCCCCCCCccchhHHhhcccCceecccc
Confidence 3455688999999999999954 455433221 11100 11122347999999999999999987653
No 28
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=98.84 E-value=4.2e-10 Score=89.51 Aligned_cols=57 Identities=28% Similarity=0.519 Sum_probs=46.4
Q ss_pred CCCccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcc---------cchhcccccccccCCccc
Q psy4925 54 YPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCG---------FCQEACPVDAIVEGPNFE 122 (160)
Q Consensus 54 ~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg---------~C~~~CP~~ai~~~~~~~ 122 (160)
+.++.++|++|+.|+.+||.+|+.+... ......|++|+ +|+++||++||.+....+
T Consensus 177 v~id~~kCigCg~Cv~aCP~~Ai~~~~~------------~~~~~kC~~C~~r~~~g~~paCv~~CP~~Ai~~g~~~d 242 (352)
T 2ivf_B 177 VLVDQERCKGHRHCVEACPYKAIYFNPV------------SQTSEKCILCYPRIEKGIANACNRQCPGRVRAFGYLDD 242 (352)
T ss_dssp EEECTTTCCCCCHHHHHCTTCCEEEETT------------TTEEEECCTTHHHHTTTBCCHHHHTCTTCCEEEEETTC
T ss_pred EEechhhcCCchHHHhhcCccceecccc------------cccccccCCCcchhhcCCCChHHHhcCccceeccccch
Confidence 3456789999999999999999976542 24567899996 999999999999876533
No 29
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
Probab=98.84 E-value=5.6e-10 Score=81.99 Aligned_cols=57 Identities=35% Similarity=0.709 Sum_probs=47.7
Q ss_pred CCccccccchh--hcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCc
Q psy4925 55 PSGEERCIACK--LCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 55 ~~~~~~Ci~Cg--~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
.++...|++|+ .|+.+||++|+.....+ .+.++...|++|+.|+.+||++||.+...
T Consensus 52 ~~~~~~C~~C~~p~C~~~CP~gAi~~~~~g---------~~~id~~~CigC~~C~~~CP~~Ai~~~~~ 110 (195)
T 2vpz_B 52 EFRPEQCLHCENPPCVPVCPTGASYQTKDG---------LVLVDPKKCIACGACIAACPYDARYLHPA 110 (195)
T ss_dssp EEEEEECCCCSSCTTTTTCSSSCEEECTTS---------CEEECTTTCCCCCHHHHHCTTCCCEECTT
T ss_pred EECcccCcCccCcHHHHhcCCCceeccccc---------ceeecCCCCCCcChhHhhCCCCCeEECCC
Confidence 34578999999 79999999999765322 45678899999999999999999988665
No 30
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B*
Probab=98.81 E-value=1e-09 Score=90.91 Aligned_cols=58 Identities=29% Similarity=0.428 Sum_probs=43.2
Q ss_pred CCCccccccchh--hcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCC
Q psy4925 54 YPSGEERCIACK--LCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 119 (160)
Q Consensus 54 ~~~~~~~Ci~Cg--~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 119 (160)
+.++.+.|++|+ .|+.+||.+||....... ...++...|++|+.|+.+||++||.+..
T Consensus 177 i~~~~~~C~~C~~~~Cv~aCP~gAI~~~~~~g--------~v~id~~kCigCg~Cv~~CP~~AI~~~~ 236 (512)
T 1q16_B 177 MMYLPRLCEHCLNPACVATCPSGAIYKREEDG--------IVLIDQDKCRGWRMCITGCPYKKIYFNW 236 (512)
T ss_dssp CEEEEECCCCCSSCHHHHTCTTCCEEEETTTC--------CEEECTTTCCCCCCHHHHCTTCCEEEET
T ss_pred EEecCccCcCCCCchhhhhCCcCcEEeecCCC--------eEEECHHHCCCchHHHhhCCccceeccc
Confidence 335678899999 699999999887642110 3457778888888888888888887654
No 31
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Probab=98.79 E-value=8.4e-10 Score=85.89 Aligned_cols=53 Identities=30% Similarity=0.721 Sum_probs=33.9
Q ss_pred ccccccchh--hcHHhchh-ccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccC
Q psy4925 57 GEERCIACK--LCEAICPA-QAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 118 (160)
Q Consensus 57 ~~~~Ci~Cg--~Cv~~CP~-~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~ 118 (160)
+.+.|++|+ .|+.+||+ +|+.....+ .+.++.+.|++||.|+.+||++||.+.
T Consensus 96 ~~~~C~~C~~~~C~~~CP~~gAi~~~~~g---------~v~id~~~CigCg~C~~~CP~~ai~~~ 151 (294)
T 1kqf_B 96 RKDGCMHCEDPGCLKACPSAGAIIQYANG---------IVDFQSENCIGCGYCIAGCPFNIPRLN 151 (294)
T ss_dssp EEESCCCBSSCHHHHHCCSTTSEEEETTS---------CEEECGGGCCCCCHHHHHCTTCCCEEE
T ss_pred CcccCCCcCChhhhhhCCccCcccccccc---------ceEeCcccCCCcchhhhcCCCCCcEec
Confidence 356677777 67777777 777543221 344566667777777777777766653
No 32
>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5
Probab=98.78 E-value=7e-10 Score=82.61 Aligned_cols=57 Identities=26% Similarity=0.366 Sum_probs=42.2
Q ss_pred CCCcccccc--chhhcHHhchhccccchhhhhcCCCccccccccCccCCcCc------c---cchhcccccccccCCccc
Q psy4925 54 YPSGEERCI--ACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYC------G---FCQEACPVDAIVEGPNFE 122 (160)
Q Consensus 54 ~~~~~~~Ci--~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~C------g---~C~~~CP~~ai~~~~~~~ 122 (160)
+.++.++|+ +|+.|+.+||.+|+.+... ..+...|++| | .|+++||++||.+....+
T Consensus 101 v~id~~~C~~~~C~~C~~~CP~~Ai~~~~~------------~~~~~kC~~C~~~~~~G~~p~Cv~~CP~~Ai~~~~~~~ 168 (214)
T 1h0h_B 101 VLFTPKTKDLEDYESVISACPYDVPRKVAE------------SNQMAKCDMCIDRITNGLRPACVTSCPTGAMNFGDLSE 168 (214)
T ss_dssp EEECGGGGGCSCHHHHHHHCTTCCCEECTT------------SSCEECCCTTHHHHTTTCCCHHHHHCSSSCEEEEEHHH
T ss_pred EEEeHHHCccccccHHHHhcCCCCeEecCC------------CcccCcCCCCcchhhcCCChhHHHhcCcccEEEccHHH
Confidence 345677888 8888888888888876432 1245679999 5 899999999998865433
No 33
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=98.76 E-value=1.1e-09 Score=97.77 Aligned_cols=58 Identities=31% Similarity=0.635 Sum_probs=46.0
Q ss_pred CCCccccccchhhcHHhchh---ccccchhhhhcCCCccccccccCccCCcCcccchhcccc-cccccCCc
Q psy4925 54 YPSGEERCIACKLCEAICPA---QAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPV-DAIVEGPN 120 (160)
Q Consensus 54 ~~~~~~~Ci~Cg~Cv~~CP~---~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~-~ai~~~~~ 120 (160)
+.++.++|++||.|+.+||. +++.++.... ...++ ..|++||.|+.+||+ +||.+...
T Consensus 946 ~~id~~~C~~Cg~C~~~CP~~~~~ai~~~~~~~--------~~~~~-~~C~~Cg~C~~~CP~~~Ai~~~~~ 1007 (1025)
T 1gte_A 946 AVIDEEMCINCGKCYMTCNDSGYQAIQFDPETH--------LPTVT-DTCTGCTLCLSVCPIIDCIRMVSR 1007 (1025)
T ss_dssp EEECTTTCCCCCHHHHHHHHHSCSCEEECTTTC--------CEEEC-TTCCCCCHHHHHCSSTTTEEEEEC
T ss_pred EEEEcccCcccCHHHHhcCccccCCEEEeCCCc--------eEEeC-ccCCChhHHHhhCCCCCCEEEecC
Confidence 34678899999999999997 8887654321 22345 789999999999999 99998665
No 34
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Probab=98.74 E-value=1.2e-09 Score=84.95 Aligned_cols=55 Identities=33% Similarity=0.671 Sum_probs=44.6
Q ss_pred CCCccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcc---------cchhcccccccccCCc
Q psy4925 54 YPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCG---------FCQEACPVDAIVEGPN 120 (160)
Q Consensus 54 ~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg---------~C~~~CP~~ai~~~~~ 120 (160)
+.++.++|++|+.|+.+||.+++.++... .....|+.|+ .|+.+||++||.+.+.
T Consensus 126 v~id~~~CigCg~C~~~CP~~ai~~~~~~------------~~~~kC~~C~~r~~~g~~p~Cv~~CP~~Ai~~~~~ 189 (294)
T 1kqf_B 126 VDFQSENCIGCGYCIAGCPFNIPRLNKED------------NRVYKCTLCVDRVSVGQEPACVKTCPTGAIHFGTK 189 (294)
T ss_dssp EEECGGGCCCCCHHHHHCTTCCCEEETTT------------TEEECCCTTHHHHTTTCCCHHHHHCTTSCEEEEEH
T ss_pred eEeCcccCCCcchhhhcCCCCCcEecCCC------------CCeeeCCCccchhhcCccHHHHHhCCcCcEEEecH
Confidence 34578899999999999999999865421 2235799998 9999999999998654
No 35
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=98.74 E-value=2.7e-09 Score=82.23 Aligned_cols=54 Identities=19% Similarity=0.211 Sum_probs=44.8
Q ss_pred Cccccccchhh--cHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCC
Q psy4925 56 SGEERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 119 (160)
Q Consensus 56 ~~~~~Ci~Cg~--Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 119 (160)
+....|++|+. |+.+||+ |+.....+ .+.++...|++|+.|+.+||++||.+..
T Consensus 63 ~~~~~C~~C~~p~C~~~CP~-Ai~~~~~g---------~v~id~~~CigC~~C~~~CP~~Ai~~~~ 118 (274)
T 1ti6_B 63 YRPTPCMHCENAPCVAKGNG-AVYQREDG---------IVLIDPEKAKGKKELLDTCPYGVMYWNE 118 (274)
T ss_dssp EEEECCCCCTTCHHHHHTTT-SEEECTTS---------CEEECTTTTTTCGGGGGGCSSCCCEEET
T ss_pred EcCCcCCCCCChHHHhhChH-HhhhccCC---------cEEechhhccchHHHHhhCccCCeEEEc
Confidence 34678999998 9999999 98754322 4568889999999999999999998754
No 36
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=98.72 E-value=2.2e-09 Score=85.88 Aligned_cols=57 Identities=26% Similarity=0.625 Sum_probs=45.5
Q ss_pred CCCccccc-cch--hhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccC
Q psy4925 54 YPSGEERC-IAC--KLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 118 (160)
Q Consensus 54 ~~~~~~~C-i~C--g~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~ 118 (160)
+.+|.+.| ..| +.|+.+||++||..+... ..+.++...|+.||.|+.+||++||...
T Consensus 200 p~id~~~c~~~Ce~~~Cv~~CP~~AI~~~~~~--------~~~~id~~~C~~Cg~C~~~CP~~Ai~~~ 259 (366)
T 3mm5_B 200 PIPNDEAIRKTCEIPSTVAACPTGALKPDMKN--------KTIKVDVEKCMYCGNCYTMCPGMPLFDP 259 (366)
T ss_dssp CCCCHHHHHHHCCHHHHHHTCTTCCEEEETTT--------TEEEECGGGCCCCCHHHHHCTTCCCCCT
T ss_pred eEEcchhccccccccchhccCCccceEecCCC--------CeEEEehhhCCCcchHHHhCCHhhcccc
Confidence 34566666 456 999999999999876321 1567899999999999999999998754
No 37
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B*
Probab=98.66 E-value=3.1e-09 Score=87.99 Aligned_cols=54 Identities=24% Similarity=0.534 Sum_probs=44.6
Q ss_pred CCCccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcc---------cchhcccccccccCC
Q psy4925 54 YPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCG---------FCQEACPVDAIVEGP 119 (160)
Q Consensus 54 ~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg---------~C~~~CP~~ai~~~~ 119 (160)
..++.++|++|+.|+.+||.+||.+.... .....|++|+ +|+++||++||.+..
T Consensus 210 v~id~~kCigCg~Cv~~CP~~AI~~~~~~------------~~~~kC~~Cg~ri~~G~~P~Cv~~CP~~Ai~~g~ 272 (512)
T 1q16_B 210 VLIDQDKCRGWRMCITGCPYKKIYFNWKS------------GKSEKCIFCYPRIEAGQPTVCSETCVGRIRYLGV 272 (512)
T ss_dssp EEECTTTCCCCCCHHHHCTTCCEEEETTT------------TEEEECCTTHHHHTTTCCCHHHHTCTTCCEEEEE
T ss_pred EEECHHHCCCchHHHhhCCccceecccCC------------CCcccCcCCCchhhcCCCCceEeeCchhhhhccc
Confidence 34678899999999999999999765421 2367899999 999999999988763
No 38
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=98.61 E-value=3.2e-09 Score=80.01 Aligned_cols=65 Identities=22% Similarity=0.360 Sum_probs=41.2
Q ss_pred ccCCCccccccchhhcHHhchhccccch-hh----------hhcCCCc-----ccccc--ccCccCCcCcccchhccccc
Q psy4925 52 RRYPSGEERCIACKLCEAICPAQAITIE-AE----------ERADGSR-----RTTRY--DIDMTKCIYCGFCQEACPVD 113 (160)
Q Consensus 52 ~~~~~~~~~Ci~Cg~Cv~~CP~~~i~~~-~~----------~~~~~~~-----~~~~~--~~~~~~C~~Cg~C~~~CP~~ 113 (160)
..+..+.++||+||.|+.+||..++... .. ....... ....+ ..+.+.|+.||+|+++||++
T Consensus 140 ~~~~~~~~~Ci~Cg~C~~~CP~~~~~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~g 219 (238)
T 2wdq_B 140 REKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKG 219 (238)
T ss_dssp HHTTTTTTTCCCCCTTGGGCHHHHHCTTTSCCHHHHHHHHHHHTCTTCCCHHHHHHTTCSTTTTTTCCCCCHHHHHCTTC
T ss_pred HHHHhccccccccCCchhhCcCCccCCCCCCCHHHHHHHHHHHhCCcccchHHHHHHHhccCCCCcCcccchhhhhcCCC
Confidence 3455678899999999999998754211 00 0001100 00011 13667899999999999999
Q ss_pred ccc
Q psy4925 114 AIV 116 (160)
Q Consensus 114 ai~ 116 (160)
+..
T Consensus 220 i~~ 222 (238)
T 2wdq_B 220 LNP 222 (238)
T ss_dssp CCH
T ss_pred CCH
Confidence 654
No 39
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=98.58 E-value=1.6e-08 Score=81.47 Aligned_cols=64 Identities=27% Similarity=0.567 Sum_probs=45.5
Q ss_pred CCCcccccc---chhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCC
Q psy4925 54 YPSGEERCI---ACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 119 (160)
Q Consensus 54 ~~~~~~~Ci---~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 119 (160)
+.+|.+.|. .|+.|+.+||++||....... ++. ....+.++...|+.||.|+.+||++||....
T Consensus 211 p~id~e~~~~~Ce~~~cv~~CPt~AI~~~~~~~-~g~-~~~~v~id~~~Ci~Cg~C~~~CP~~Ai~~~~ 277 (386)
T 3or1_B 211 PMIDHENLAELCEIPLAVAACPTAAVKPITAEV-NGQ-KVKSVAINNDRCMYCGNCYTMCPALPLSDGT 277 (386)
T ss_dssp CCCCTTTHHHHCCHHHHHHHCTTCCEEEEEEEE-TTE-EEEEEEECTTTCCCCCHHHHHCTTCCCCCTT
T ss_pred ceechhhhcccccchhhhhhCchhhcccccccc-CCc-cccccccCCCcCCccccHHHhCcHhhCcCCC
Confidence 345666665 358999999999998743100 000 0114678999999999999999999987654
No 40
>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5
Probab=98.58 E-value=6.9e-09 Score=77.21 Aligned_cols=57 Identities=18% Similarity=0.163 Sum_probs=46.0
Q ss_pred Cccccccchhh--cHHhch---hccccchhhhhcCCCccccccccCccCCc--CcccchhcccccccccCCc
Q psy4925 56 SGEERCIACKL--CEAICP---AQAITIEAEERADGSRRTTRYDIDMTKCI--YCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 56 ~~~~~Ci~Cg~--Cv~~CP---~~~i~~~~~~~~~~~~~~~~~~~~~~~C~--~Cg~C~~~CP~~ai~~~~~ 120 (160)
+....|++|+. |+.+|| ++|+...... ..+.++...|+ +|+.|+.+||++||.+...
T Consensus 67 ~~~~~C~~C~~p~C~~~CP~~~~gAi~~~~~~--------g~v~id~~~C~~~~C~~C~~~CP~~Ai~~~~~ 130 (214)
T 1h0h_B 67 FFPDQCRHCIAPPCKATADMEDESAIIHDDAT--------GCVLFTPKTKDLEDYESVISACPYDVPRKVAE 130 (214)
T ss_dssp EEEECCCCCSSCHHHHHHTTTCTTSEEECTTT--------CCEEECGGGGGCSCHHHHHHHCTTCCCEECTT
T ss_pred ecCCcCcCcCCchhhccCCccccccEEecCCC--------CeEEEeHHHCccccccHHHHhcCCCCeEecCC
Confidence 45678999996 999999 9998764311 14567888999 9999999999999987643
No 41
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=98.48 E-value=2.2e-08 Score=75.61 Aligned_cols=61 Identities=30% Similarity=0.644 Sum_probs=39.3
Q ss_pred CCCccccccchhhcHHhchhccccchhhh--------h--cCCC-----cccccc--ccCccCCcCcccchhcccccc
Q psy4925 54 YPSGEERCIACKLCEAICPAQAITIEAEE--------R--ADGS-----RRTTRY--DIDMTKCIYCGFCQEACPVDA 114 (160)
Q Consensus 54 ~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~--------~--~~~~-----~~~~~~--~~~~~~C~~Cg~C~~~CP~~a 114 (160)
...+.++||+||.|+.+||..++.....+ + .+.. .....+ ..+.+.|+.||+|+++||++.
T Consensus 141 ~~~~~~~Ci~Cg~C~~~CP~~~~~~~~~gP~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi 218 (243)
T 1kf6_B 141 KYHQFSGCINCGLCYAACPQFGLNPEFIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTFVGYCSEVCPKHV 218 (243)
T ss_dssp TTGGGGCCCCCCHHHHHCHHHHHCTTSCCHHHHHHHHHHHTCTTCCCTHHHHHHHHSTTTGGGCCCCCHHHHHCTTCC
T ss_pred HhhhhhhccccCccccccCCCcccCCCCCHHHHHHHHHHhhCccccchHHHHHHHhccCCcccCcccCCcchhCCCCC
Confidence 44678899999999999998765311000 0 0000 001111 135678999999999999984
No 42
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=98.45 E-value=5.7e-09 Score=80.59 Aligned_cols=104 Identities=15% Similarity=0.223 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcccCCCccCCCCCCccCccccccCCCccccccchhhcHHhchhccccchhhhhc-----
Q psy4925 10 FLTEIFRGFFVATGHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERA----- 84 (160)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~----- 84 (160)
.+++|+.++..++..+-+-..|+.................+......+...||.||.|..+||+....-+....+
T Consensus 131 VikDLvvD~~~f~~~~~~v~p~l~~~~~~~~~~~~~~qs~~~~~~~~~~~~CI~CG~C~~aCP~~~~~~~~~lGP~~li~ 210 (282)
T 3vr8_B 131 VIKDLVPDMNLFYAQYASIQPWLQKKTKINLGEKQQYQSIKEQEKLDGLYECILCACCSASCPSYWWNADKYLGPAVLMQ 210 (282)
T ss_pred eeeccccccHHHHHHHHHHhhhcCCCCCCCCCchhcccCHHHHHHHHhhhhCcccCcCcccCCceeccCCcCCCHHHHHH
Confidence 455666666666655444333433221111111111111221112223567999999999999754321100000
Q ss_pred ------CCCc-----ccccc--ccCccCCcCcccchhccccc
Q psy4925 85 ------DGSR-----RTTRY--DIDMTKCIYCGFCQEACPVD 113 (160)
Q Consensus 85 ------~~~~-----~~~~~--~~~~~~C~~Cg~C~~~CP~~ 113 (160)
+... +...+ ....+.|+.||.|..+||.+
T Consensus 211 a~r~~~d~rd~~~~erl~~l~~~~~l~~C~~Cg~C~~vCP~g 252 (282)
T 3vr8_B 211 AYRWIIDSRDDSAAERLARMQDGFSAFKCHTIMNCTKTCPKH 252 (282)
T ss_pred HHHHHhCCcccchHHHHHHHhhcCCcccChhhCCccccCcCC
Confidence 0000 00001 13567899999999999988
No 43
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=98.40 E-value=3.2e-08 Score=74.65 Aligned_cols=59 Identities=24% Similarity=0.456 Sum_probs=37.8
Q ss_pred CccccccchhhcHHhchhccccchhhhhc----------CC-Cc-----ccccc--ccCccCCcCcccchhcccccc
Q psy4925 56 SGEERCIACKLCEAICPAQAITIEAEERA----------DG-SR-----RTTRY--DIDMTKCIYCGFCQEACPVDA 114 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~----------~~-~~-----~~~~~--~~~~~~C~~Cg~C~~~CP~~a 114 (160)
.+.++||+||.|+.+||+.++.....+.. +. .. +.... ....+.|+.||.|+++||.+.
T Consensus 146 ~~~~~Ci~Cg~C~~~CP~~~~~~~~~~p~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~~i 222 (241)
T 2bs2_B 146 FELDRCIECGCCIAACGTKIMREDFVGAAGLNRVVRFMIDPHDERTDEDYYELIGDDDGVFGCMTLLACHDVCPKNL 222 (241)
T ss_dssp HHHHTCCCCCHHHHTCHHHHHCTTCCHHHHHHHHHHHHTCTTCCCCHHHHHHHHCSTTTGGGCCCCCHHHHHCTTCC
T ss_pred hhhhhhhccCcCcccCCCCccCCCCCCHHHHHHHHHHhhCccccccHHHHHHHHhcccCcccCcccChhhHhcCCCC
Confidence 35678999999999999986531110000 00 00 00011 345678999999999999994
No 44
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D
Probab=98.38 E-value=3.6e-08 Score=75.57 Aligned_cols=60 Identities=18% Similarity=0.371 Sum_probs=45.2
Q ss_pred cchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCc---ccccccchhhh
Q psy4925 62 IACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN---FEFSTESHEEL 131 (160)
Q Consensus 62 i~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~---~~~~~~~~~~~ 131 (160)
++|+.|+.+||.++|.++... ....+...|++|+.|+.+|| +||.+... +.+..++.|.+
T Consensus 174 ~~C~~C~~~CP~g~I~id~~~---------~v~~d~~~C~~C~~C~~vCp-~aI~~~~~~d~~i~~VEt~Gsl 236 (265)
T 2pa8_D 174 ANCEKAVNVCPEGVFELKDGK---------LSVKNELSCTLCEECLRYCN-GSIRISFVEDKYILEIESVGSL 236 (265)
T ss_dssp SCCTTHHHHCTTCCEEEETTE---------EEESCGGGCCCCCHHHHHHT-TSEEEEEEEEEEEEEEEECSSS
T ss_pred hhHHHHHHhCcccCeEecCCe---------eEEeccccCCCchHHHHhCC-CceEEEecCCeEEEEeccCCCC
Confidence 789999999999999876521 23457788999999999999 88876554 44555554443
No 45
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=98.38 E-value=2.6e-08 Score=75.80 Aligned_cols=63 Identities=22% Similarity=0.459 Sum_probs=39.1
Q ss_pred ccCCCccccccchhhcHHhchhccccchhh-h----------hcCCCc-----ccccc--ccCccCCcCcccchhccccc
Q psy4925 52 RRYPSGEERCIACKLCEAICPAQAITIEAE-E----------RADGSR-----RTTRY--DIDMTKCIYCGFCQEACPVD 113 (160)
Q Consensus 52 ~~~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~~-~----------~~~~~~-----~~~~~--~~~~~~C~~Cg~C~~~CP~~ 113 (160)
.....+...||+||.|+.+||+.++.-+.. + ..++.. +...+ ....+.|+.||.|+++||.+
T Consensus 149 ~~~~~~~~~Ci~CG~C~~~CP~~~~~~~~~lgP~~~~~~~r~~~~~r~~~~~~r~~~~~~~~~~~~C~~Cg~C~~~CP~~ 228 (252)
T 2h88_B 149 RQKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDYTEERLAQLQDPFSLYRCHTIMNCTRTCPKG 228 (252)
T ss_dssp HHTTTTTTTCCCCCTTGGGCHHHHHHTTTCCHHHHHHHHHHHHTCTTCCCHHHHHHTTCSTTTTTTCCCCCHHHHHCTTC
T ss_pred HHHhHhHHhchhhCcchhhCCCCccCCCCcCCHHHHHHHHHHhhCCcccchHHHHHHHhcccCCCcCccccchhhhcCCC
Confidence 334456789999999999999875321000 0 001100 00111 13567899999999999999
Q ss_pred c
Q psy4925 114 A 114 (160)
Q Consensus 114 a 114 (160)
.
T Consensus 229 i 229 (252)
T 2h88_B 229 L 229 (252)
T ss_dssp C
T ss_pred C
Confidence 3
No 46
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=98.28 E-value=1.8e-07 Score=75.92 Aligned_cols=44 Identities=23% Similarity=0.462 Sum_probs=37.4
Q ss_pred hhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhccccccccc
Q psy4925 64 CKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVE 117 (160)
Q Consensus 64 Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~ 117 (160)
|+.|+.+||++||..+.. .+.++...|+.||.|+.+||++++..
T Consensus 260 ~~~cv~~CPt~Ai~~~~~----------~~~id~~~Ci~Cg~Ci~~CP~~~~~~ 303 (418)
T 3mm5_A 260 ENEVVKLCPTGAIKWDGK----------ELTIDNRECVRCMHCINKMPKALKPG 303 (418)
T ss_dssp HHHTGGGCTTCCEEECSS----------CEEECTTTCCCCCHHHHHCTTTEECC
T ss_pred CccccccCCccccccCCc----------eeEEChhhcCccChhHHhCcHhhccC
Confidence 589999999999987632 56789999999999999999976543
No 47
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=98.25 E-value=1.7e-07 Score=79.02 Aligned_cols=57 Identities=23% Similarity=0.355 Sum_probs=43.9
Q ss_pred ccccc------cchhhcHHhchhccccc-hhhhhcCCCccccccccCccCCcCcccchhcccccccccC
Q psy4925 57 GEERC------IACKLCEAICPAQAITI-EAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 118 (160)
Q Consensus 57 ~~~~C------i~Cg~Cv~~CP~~~i~~-~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~ 118 (160)
|.+.| ..|+.|+.+||++++.+ +... +. ...+.++...|++||.|..+||+++|...
T Consensus 508 d~~~~~~~~~~~~~~~c~~~CPa~~~~~~~~~~---~~--~~~~~i~~~~Ci~C~~C~~~cp~~~i~~~ 571 (584)
T 2gmh_A 508 DDSVPVNRNLSIYDGPEQRFCPAGVYEFVPLEQ---GD--GFRLQINAQNCVHCKTCDIKDPSQNINWV 571 (584)
T ss_dssp STTHHHHTHHHHHCCTHHHHCTTCCEEEEECSS---TT--CEEEEECGGGCCCCCHHHHHCTTCCEEEC
T ss_pred CcccchhhchhhhcchhhhcCChhhEEEeecCC---CC--ceEEEEeCCCCcCCCCchhhCCCCCceeE
Confidence 55678 77899999999999976 3111 00 01467899999999999999999999653
No 48
>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=98.11 E-value=1.6e-07 Score=81.79 Aligned_cols=59 Identities=22% Similarity=0.473 Sum_probs=39.1
Q ss_pred ccccccchhhcHHhchhccccchhh-hhcCCCccccccccCccCCcCcccchhccccccccc
Q psy4925 57 GEERCIACKLCEAICPAQAITIEAE-ERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVE 117 (160)
Q Consensus 57 ~~~~Ci~Cg~Cv~~CP~~~i~~~~~-~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~ 117 (160)
+.++|++||.|+.+||+++...... ....+. ...+..+.+.|+.||+|+.+||++++..
T Consensus 413 ~~~~Ci~CG~C~~~CP~~~~~~~il~~~~~G~--~~~~~~~~~~Ci~Cg~C~~vCP~ga~~~ 472 (807)
T 3cf4_A 413 MVAKCADCGACLLACPEEIDIPEAMGFAKKGD--FSYFEEIHDTCIGCRRCEQVCKKEIPIL 472 (807)
T ss_dssp HHHHCCCCCHHHHHCTTCCCHHHHHHHHHTTC--THHHHHHHHHCCCCCHHHHHCTTCCCHH
T ss_pred hHHhCCCCCchhhhCCCCCchHHHHHHHHcCC--hhhhhhchhhccchhhHHHhCCCCCChH
Confidence 4678999999999999875321110 000111 0112334578999999999999998664
No 49
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*
Probab=97.95 E-value=9.5e-07 Score=71.89 Aligned_cols=41 Identities=24% Similarity=0.509 Sum_probs=35.4
Q ss_pred hhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhccccccc
Q psy4925 65 KLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 115 (160)
Q Consensus 65 g~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai 115 (160)
+.|+.+||++||..+.. .+.++...|+.||.|+.+||+.+.
T Consensus 278 ~~vv~~CPt~ai~~~~~----------~l~Id~~~C~~Cg~Ci~~CP~al~ 318 (437)
T 3or1_A 278 AEVVGLCPTGCMTYESG----------TLSIDNKNCTRCMHCINTMPRALK 318 (437)
T ss_dssp HHTTTTCTTCCEEEETT----------EEEECGGGCCCCSHHHHHCTTTEE
T ss_pred hhhhccCcHHheeecCC----------EEEEccccCCchhhhHhhCcHhhc
Confidence 57999999999998642 577899999999999999998654
No 50
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.74 E-value=7.1e-06 Score=69.58 Aligned_cols=55 Identities=31% Similarity=0.696 Sum_probs=39.9
Q ss_pred Ccccccc--chh-hcHHhchhc-----cccchhhhhcCCCccccccccCccCCcCcccchhcccccccccC
Q psy4925 56 SGEERCI--ACK-LCEAICPAQ-----AITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 118 (160)
Q Consensus 56 ~~~~~Ci--~Cg-~Cv~~CP~~-----~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~ 118 (160)
++.++|. .|+ .|.+.||.. +|.++... ....+....|++||.|+..||.+||.+.
T Consensus 11 ~~~~~c~~~~~~~~c~~~cp~~~~~~~~~~~~~~~--------~~~~i~~~~c~~~~~~~~~cp~~~i~i~ 73 (608)
T 3j16_B 11 VSADKCKPKKCRQECKRSCPVVKTGKLCIEVTPTS--------KIAFISEILCIGCGICVKKCPFDAIQII 73 (608)
T ss_dssp ECSSSCCHHHHCSHHHHHCHHHHHTCCSEEEETTT--------TEEEECTTTCCCCCHHHHHCSSCCEEEE
T ss_pred EeccccCccccccchhhcCCCccCCceEEEEcCCC--------CceEEehhhccccccccccCCccceEEe
Confidence 4567786 587 799999952 33332111 1456788899999999999999998763
No 51
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis}
Probab=97.36 E-value=3.5e-05 Score=50.34 Aligned_cols=57 Identities=25% Similarity=0.453 Sum_probs=34.8
Q ss_pred CccccccchhhcHHhchhccccchhhhhcCCCccccccccCccCCcCcccchhcccccccccCCc
Q psy4925 56 SGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
++.+.|++||.|+.+||++||.+......... .....+.. ......||.+|+.+.+.
T Consensus 34 ~~~~~C~~Cg~C~~~CP~~Ai~~~~~~~~~~~---~~~~~d~~-----~~~~~~~~~ga~~~g~~ 90 (105)
T 2v2k_A 34 IHPDECVDCGACEPVCPVEAIYYEDDVPDQWS---SYAQANAD-----FFAELGSPGGASKVGQT 90 (105)
T ss_dssp ECTTTCCCCCCSGGGCTTCCEEEGGGCCGGGT---THHHHHHH-----TTTTTCCCSCHHHHCSC
T ss_pred EeCCcCcchhhHHHhCCccCEEecCCChHHHH---HHHHhchH-----HHhhcCCCcceEEeecC
Confidence 46788999999999999999987643211100 00001111 01236789999888654
No 52
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1
Probab=97.18 E-value=0.00016 Score=44.75 Aligned_cols=26 Identities=35% Similarity=0.717 Sum_probs=22.1
Q ss_pred cCccCCcCcccchhcccccccccCCc
Q psy4925 95 IDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 95 ~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
++...|++||.|+.+||++||.+...
T Consensus 3 ~~~~~C~~C~~C~~~CP~~ai~~~~~ 28 (80)
T 1rgv_A 3 YINDDCTACDACVEECPNEAITPGDP 28 (80)
T ss_dssp CCCSCCCCCCTTTTTCTTCCEECCSS
T ss_pred EeCCCCcChhhHHHHcChhccCcCCC
Confidence 45678999999999999999987553
No 53
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}
Probab=97.15 E-value=0.00018 Score=44.73 Aligned_cols=26 Identities=35% Similarity=0.815 Sum_probs=22.0
Q ss_pred cCccCCcCcccchhcccccccccCCc
Q psy4925 95 IDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 95 ~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
++...|++||.|+.+||++||.+...
T Consensus 3 ~~~~~C~~C~~C~~~CP~~ai~~~~~ 28 (82)
T 2fgo_A 3 KITDDCINCDVCEPECPNGAISQGEE 28 (82)
T ss_dssp CCCTTCCCCCTTGGGCTTCCEEECSS
T ss_pred eeCCCCCChhhHHHHCChhccCCCCC
Confidence 45678999999999999999987543
No 54
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A
Probab=97.13 E-value=8.8e-05 Score=42.46 Aligned_cols=23 Identities=30% Similarity=0.845 Sum_probs=20.2
Q ss_pred CccccccchhhcHHhchhccccc
Q psy4925 56 SGEERCIACKLCEAICPAQAITI 78 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~ 78 (160)
++.+.|++||.|+.+||++||.+
T Consensus 32 ~~~~~C~~C~~C~~~CP~~ai~~ 54 (55)
T 2fdn_A 32 IDADTCIDCGACAGVCPVDAPVQ 54 (55)
T ss_dssp ECTTTCCCCCHHHHTCTTCCEEE
T ss_pred eccccCcChhChHHHccccceec
Confidence 46788999999999999999864
No 55
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A
Probab=97.12 E-value=0.00015 Score=45.09 Aligned_cols=26 Identities=35% Similarity=0.880 Sum_probs=22.2
Q ss_pred cCccCCcCcccchhcccccccccCCc
Q psy4925 95 IDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 95 ~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
++...|++|+.|+.+||++||.+...
T Consensus 3 ~~~~~C~~C~~C~~~CP~~ai~~~~~ 28 (82)
T 3eun_A 3 MITDECINCDVCEPECPNGAISQGDE 28 (82)
T ss_dssp EECTTCCCCCTTGGGCTTCCEEECSS
T ss_pred EeCCCCcCccchHHHCChhheEcCCC
Confidence 45678999999999999999987554
No 56
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Probab=97.08 E-value=0.00014 Score=44.70 Aligned_cols=24 Identities=46% Similarity=0.955 Sum_probs=21.2
Q ss_pred CccccccchhhcHHhchhccccch
Q psy4925 56 SGEERCIACKLCEAICPAQAITIE 79 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~~ 79 (160)
++.+.|++||.|+.+||++||.+.
T Consensus 34 ~~~~~C~~Cg~C~~~CP~~ai~~~ 57 (77)
T 1bc6_A 34 IDPDVCIDCGACEAVCPVSAIYHE 57 (77)
T ss_dssp ECTTTCCSCCSHHHHSGGGSSEET
T ss_pred ECcccCcCccCCHhhcCccceEec
Confidence 467889999999999999999764
No 57
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}
Probab=97.06 E-value=0.00018 Score=45.12 Aligned_cols=26 Identities=38% Similarity=0.920 Sum_probs=21.9
Q ss_pred cCccCCcCcccchhcccccccccCCc
Q psy4925 95 IDMTKCIYCGFCQEACPVDAIVEGPN 120 (160)
Q Consensus 95 ~~~~~C~~Cg~C~~~CP~~ai~~~~~ 120 (160)
++...|++||.|+.+||++||.+...
T Consensus 3 ~~~~~C~~C~~C~~~CP~~ai~~~~~ 28 (85)
T 2zvs_A 3 LITKKCINCDMCEPECPNEAISMGDH 28 (85)
T ss_dssp EECTTCCCCCTTTTTCTTCCEECCSS
T ss_pred EeCCcCcChhHHHHHCchhccCcCCC
Confidence 34568999999999999999987553
No 58
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*
Probab=97.04 E-value=0.00017 Score=44.32 Aligned_cols=26 Identities=35% Similarity=0.890 Sum_probs=21.9
Q ss_pred CccccccchhhcHHhchhccccchhh
Q psy4925 56 SGEERCIACKLCEAICPAQAITIEAE 81 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~~~~ 81 (160)
.+.+.|++||.|+.+||++||.+...
T Consensus 42 ~~~~~C~~Cg~C~~~CP~~ai~~~~~ 67 (80)
T 1jb0_C 42 PRTEDCVGCKRCETACPTDFLSIRVY 67 (80)
T ss_dssp TTGGGCCCCCHHHHHCCSSSCSEEEE
T ss_pred CCCCcCcCcCChhhhCCCCccEeeee
Confidence 35678999999999999999987543
No 59
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2
Probab=97.04 E-value=0.00017 Score=44.39 Aligned_cols=25 Identities=40% Similarity=0.789 Sum_probs=21.7
Q ss_pred CccccccchhhcHHhchhccccchh
Q psy4925 56 SGEERCIACKLCEAICPAQAITIEA 80 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~~~ 80 (160)
++.+.|++||.|+.+||++||.+..
T Consensus 34 ~~~~~C~~C~~C~~~CP~~Ai~~~~ 58 (78)
T 1h98_A 34 IHPEECIDCGACVPACPVNAIYPEE 58 (78)
T ss_dssp ECTTTCCCCCTHHHHCTTCCEEEGG
T ss_pred ECcccCCcHhHHHHhCCccceEecc
Confidence 4578899999999999999998654
No 60
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Probab=97.03 E-value=0.00016 Score=46.84 Aligned_cols=25 Identities=40% Similarity=1.011 Sum_probs=21.5
Q ss_pred CCccccccchhhcHHhchhccccch
Q psy4925 55 PSGEERCIACKLCEAICPAQAITIE 79 (160)
Q Consensus 55 ~~~~~~Ci~Cg~Cv~~CP~~~i~~~ 79 (160)
.++...|++||.|+.+||++||.+.
T Consensus 77 ~~~~~~C~~Cg~C~~~CP~~Ai~~~ 101 (103)
T 1xer_A 77 PVNEQACIFCMACVNVCPVAAIDVK 101 (103)
T ss_dssp CTTGGGCCCCCHHHHHCTTCCEEEC
T ss_pred ecCcccccChhhHHHhccccceEec
Confidence 3567889999999999999999754
No 61
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A
Probab=97.02 E-value=0.0002 Score=42.18 Aligned_cols=26 Identities=35% Similarity=0.791 Sum_probs=22.0
Q ss_pred cccCccCCcCcccchhcccccccccCC
Q psy4925 93 YDIDMTKCIYCGFCQEACPVDAIVEGP 119 (160)
Q Consensus 93 ~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 119 (160)
+.++...|++||.|+.+|| +++.+..
T Consensus 4 ~~id~~~C~~Cg~C~~~CP-~~~~~~~ 29 (64)
T 1dax_A 4 FYVDQDECIACESCVEIAP-GAFAMDP 29 (64)
T ss_dssp CEECSTTCCSCCHHHHHCT-TTEEECS
T ss_pred EEEccccCCCchHHHHhCC-ccEeEcC
Confidence 4577889999999999999 8887654
No 62
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.01 E-value=0.00023 Score=60.36 Aligned_cols=54 Identities=37% Similarity=0.838 Sum_probs=39.8
Q ss_pred Ccccccc--chh--hcHHhchhc-----cccchhhhhcCCCccccccccCccCCcCcccchhccccccccc
Q psy4925 56 SGEERCI--ACK--LCEAICPAQ-----AITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVE 117 (160)
Q Consensus 56 ~~~~~Ci--~Cg--~Cv~~CP~~-----~i~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~ 117 (160)
++.++|. .|+ .|.+.||.. +|.++... ....+....|++||.|+..||..||.+
T Consensus 24 ~~~~~c~p~~c~~~~c~~~cp~~~~~~~~~~~~~~~--------~~~~i~e~~c~gc~~~~~~~p~~~i~i 86 (607)
T 3bk7_A 24 IDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEEN--------YKPIIQEASCTGCGICVHKCPFNAISI 86 (607)
T ss_dssp CCGGGCCTTTSSSCHHHHHCHHHHTTCCSEEEETTT--------TEEEECTTTCCCCCHHHHHCSSCCCEE
T ss_pred eeccccCCCCCChhhHhhhCCCCcCCceEEEEcCCC--------CcceeeecccCccccccCCCCcceEEE
Confidence 4667787 686 899999952 23333221 144577889999999999999998877
No 63
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=96.97 E-value=0.0002 Score=46.82 Aligned_cols=26 Identities=54% Similarity=0.972 Sum_probs=22.5
Q ss_pred CccccccchhhcHHhchhccccchhh
Q psy4925 56 SGEERCIACKLCEAICPAQAITIEAE 81 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~~~~ 81 (160)
++.+.|++||.|+.+||++||.+...
T Consensus 34 i~~~~C~~Cg~C~~~CP~~ai~~~~~ 59 (106)
T 7fd1_A 34 IHPDECIDCALCEPECPAQAIFSEDE 59 (106)
T ss_dssp ECTTTCCCCCTTGGGCTTCCEEEGGG
T ss_pred ECcccCCChhhhHHhCCChhhhcccc
Confidence 45678999999999999999987654
No 64
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Probab=96.96 E-value=0.00027 Score=40.62 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=20.0
Q ss_pred CccccccchhhcHHhchhccccc
Q psy4925 56 SGEERCIACKLCEAICPAQAITI 78 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~ 78 (160)
++.+.|+.|+.|+.+||++||.+
T Consensus 36 ~~~~~c~~C~~C~~~CP~~Ai~~ 58 (59)
T 1dwl_A 36 APDSTAECAQDAIDACPVEAISK 58 (59)
T ss_dssp CTTCCCGGGGTGGGGSTTCCEEE
T ss_pred cChhhhhHHHHHHHhCCHhhEEc
Confidence 35678999999999999999864
No 65
>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A
Probab=96.89 E-value=0.00025 Score=40.82 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=18.9
Q ss_pred cccccchhhcHHhchhccccc
Q psy4925 58 EERCIACKLCEAICPAQAITI 78 (160)
Q Consensus 58 ~~~Ci~Cg~Cv~~CP~~~i~~ 78 (160)
.+.|+.|+.|+.+||++||.+
T Consensus 37 ~~~C~~C~~C~~~CP~~Ai~~ 57 (58)
T 1f2g_A 37 DSDLDCVEEAIDSCPAEAIVR 57 (58)
T ss_dssp TCCSTHHHHHHHTCSSCCCBC
T ss_pred ccchHHHHHHHhhCChhhEEe
Confidence 578999999999999999864
No 66
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A
Probab=96.85 E-value=0.0003 Score=40.57 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.4
Q ss_pred cccccchhhcHHhchhccccch
Q psy4925 58 EERCIACKLCEAICPAQAITIE 79 (160)
Q Consensus 58 ~~~Ci~Cg~Cv~~CP~~~i~~~ 79 (160)
.+.|+.|+.|+.+||++||.+.
T Consensus 38 ~~~c~~C~~C~~~CP~~Ai~~~ 59 (60)
T 1rof_A 38 ETDLPCAKDAADSCPTGAISVE 59 (60)
T ss_dssp SCCSTTHHHHHHHCTTCCEECC
T ss_pred hhhHHHHHHHHHhCCHhHEEEe
Confidence 5789999999999999998753
No 67
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*
Probab=96.68 E-value=0.00048 Score=42.62 Aligned_cols=26 Identities=35% Similarity=0.599 Sum_probs=21.6
Q ss_pred ccccCccCCcCcccchhcccccccccC
Q psy4925 92 RYDIDMTKCIYCGFCQEACPVDAIVEG 118 (160)
Q Consensus 92 ~~~~~~~~C~~Cg~C~~~CP~~ai~~~ 118 (160)
.+.++...|++||.|+.+|| +++.+.
T Consensus 3 ~v~vd~~~CigCg~C~~~CP-~~~~~~ 28 (81)
T 1iqz_A 3 YTIVDKETCIACGACGAAAP-DIYDYD 28 (81)
T ss_dssp EEEECTTTCCCCSHHHHHCT-TTEEEC
T ss_pred EEEEecccCcccChhhHhCc-hheeeC
Confidence 34678889999999999999 777654
No 68
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Probab=96.63 E-value=0.0005 Score=48.01 Aligned_cols=25 Identities=28% Similarity=0.753 Sum_probs=21.9
Q ss_pred CccccccchhhcHHhchhccccchh
Q psy4925 56 SGEERCIACKLCEAICPAQAITIEA 80 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~~~ 80 (160)
++.++|++||.|+.+||++||.+..
T Consensus 42 id~~~C~~Cg~Cv~~CP~~AI~~~~ 66 (150)
T 1jnr_B 42 REPDMCWECYSCVKMCPQGAIDVRG 66 (150)
T ss_dssp SCGGGCCCCCHHHHHCTTCCEEECC
T ss_pred eCcccCcCHhHHHHhCCccceEecC
Confidence 5678899999999999999998754
No 69
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*
Probab=96.49 E-value=0.00081 Score=47.77 Aligned_cols=25 Identities=44% Similarity=0.918 Sum_probs=21.3
Q ss_pred cCccCCcCcccchhcccccccccCC
Q psy4925 95 IDMTKCIYCGFCQEACPVDAIVEGP 119 (160)
Q Consensus 95 ~~~~~C~~Cg~C~~~CP~~ai~~~~ 119 (160)
.+...|++|+.|+.+||++||.+..
T Consensus 48 ~d~~~Ci~C~~C~~~CP~~ai~~~~ 72 (182)
T 3i9v_9 48 NGLEKCIGCSLCAAACPAYAIYVEP 72 (182)
T ss_dssp TSCBSCCCCCHHHHHCTTCCEEEEE
T ss_pred CCCccCcccccchhhCCcccEEeec
Confidence 4567899999999999999987644
No 70
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A
Probab=96.34 E-value=0.001 Score=38.96 Aligned_cols=26 Identities=23% Similarity=0.551 Sum_probs=21.3
Q ss_pred ccccCccCCcCcccchhcccccccccC
Q psy4925 92 RYDIDMTKCIYCGFCQEACPVDAIVEG 118 (160)
Q Consensus 92 ~~~~~~~~C~~Cg~C~~~CP~~ai~~~ 118 (160)
.+.++...|++||.|+.+||. ++.+.
T Consensus 3 ~~~id~~~C~~C~~C~~~Cp~-~~~~~ 28 (66)
T 1sj1_A 3 KVSVDQDTCIGDAICASLCPD-VFEMN 28 (66)
T ss_dssp EEEECTTTCCCCCHHHHHCTT-TEEEC
T ss_pred EEEECcccCcCchHHHHhCCc-eEEEC
Confidence 345778899999999999995 77764
No 71
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=95.97 E-value=0.0017 Score=45.99 Aligned_cols=27 Identities=33% Similarity=0.715 Sum_probs=23.3
Q ss_pred ccCccCCcCcc-----cchhcccccccccCCc
Q psy4925 94 DIDMTKCIYCG-----FCQEACPVDAIVEGPN 120 (160)
Q Consensus 94 ~~~~~~C~~Cg-----~C~~~CP~~ai~~~~~ 120 (160)
.++...|++|+ .|+.+||++||.+...
T Consensus 3 ~id~~~C~gC~~c~~~~C~~~CP~~ai~~~~~ 34 (166)
T 3gyx_B 3 YVDPSKCDGCKGGEKTACMYICPNDLMILDPE 34 (166)
T ss_dssp EECTTTCCCCCSSSCCHHHHHCTTSCEEEETT
T ss_pred EEcchhcCCCCCCCcchhHHhCCccccEEecC
Confidence 46778899999 9999999999987654
No 72
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*
Probab=95.48 E-value=0.0042 Score=50.33 Aligned_cols=27 Identities=41% Similarity=0.786 Sum_probs=23.4
Q ss_pred cccCccCCcCcccchhcccccccccCC
Q psy4925 93 YDIDMTKCIYCGFCQEACPVDAIVEGP 119 (160)
Q Consensus 93 ~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 119 (160)
+.++...|++||.|+.+||++||....
T Consensus 28 i~~d~~kCi~Cg~C~~~CP~~ai~~~~ 54 (421)
T 1hfe_L 28 VQIDEAKCIGCDTCSQYCPTAAIFGEM 54 (421)
T ss_dssp EEECTTTCCCCCHHHHHCTTCCCBCCT
T ss_pred EEECcccCCCccHHHHhcCcCceeccc
Confidence 457888999999999999999998654
No 73
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=95.41 E-value=0.0037 Score=52.61 Aligned_cols=27 Identities=22% Similarity=0.610 Sum_probs=23.0
Q ss_pred CCCccccccchhhcHHhchhccccchh
Q psy4925 54 YPSGEERCIACKLCEAICPAQAITIEA 80 (160)
Q Consensus 54 ~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~ 80 (160)
..++.++|+.||.|+.+||++||....
T Consensus 183 ~~i~~~~Ci~Cg~Cv~~CP~gAi~~~~ 209 (574)
T 3c8y_A 183 KCFDDTNCLLCGQCIIACPVAALSEKS 209 (574)
T ss_dssp CCGGGSSCCCCCHHHHHCSSTTEEECC
T ss_pred ceechhhCCcchhHHHhhccCCccccc
Confidence 346778999999999999999997653
No 74
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=95.40 E-value=0.004 Score=49.90 Aligned_cols=26 Identities=27% Similarity=0.732 Sum_probs=22.7
Q ss_pred CCCccccccchhhcHHhchhccccch
Q psy4925 54 YPSGEERCIACKLCEAICPAQAITIE 79 (160)
Q Consensus 54 ~~~~~~~Ci~Cg~Cv~~CP~~~i~~~ 79 (160)
+.++.++|+.||.|+.+||.+|+...
T Consensus 251 v~id~~~Ci~Cg~C~~~CP~~Ai~~~ 276 (386)
T 3or1_B 251 VAINNDRCMYCGNCYTMCPALPLSDG 276 (386)
T ss_dssp EEECTTTCCCCCHHHHHCTTCCCCCT
T ss_pred cccCCCcCCccccHHHhCcHhhCcCC
Confidence 55678899999999999999998754
No 75
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=95.14 E-value=0.0054 Score=48.78 Aligned_cols=27 Identities=22% Similarity=0.597 Sum_probs=22.7
Q ss_pred cCCCccccccchhhcHHhchhccccch
Q psy4925 53 RYPSGEERCIACKLCEAICPAQAITIE 79 (160)
Q Consensus 53 ~~~~~~~~Ci~Cg~Cv~~CP~~~i~~~ 79 (160)
...++.++|++||.|+.+||.+||...
T Consensus 233 ~~~id~~~C~~Cg~C~~~CP~~Ai~~~ 259 (366)
T 3mm5_B 233 TIKVDVEKCMYCGNCYTMCPGMPLFDP 259 (366)
T ss_dssp EEEECGGGCCCCCHHHHHCTTCCCCCT
T ss_pred eEEEehhhCCCcchHHHhCCHhhcccc
Confidence 345678899999999999999988643
No 76
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.11 E-value=0.0046 Score=52.37 Aligned_cols=25 Identities=40% Similarity=0.782 Sum_probs=21.6
Q ss_pred CccccccchhhcHHhchhccccchh
Q psy4925 56 SGEERCIACKLCEAICPAQAITIEA 80 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~~~ 80 (160)
+.++.||+||.||+-||.+||.+.+
T Consensus 50 i~~~~c~~~~~~~~~cp~~~i~i~n 74 (608)
T 3j16_B 50 ISEILCIGCGICVKKCPFDAIQIIN 74 (608)
T ss_dssp ECTTTCCCCCHHHHHCSSCCEEEEE
T ss_pred EehhhccccccccccCCccceEEec
Confidence 4577899999999999999998753
No 77
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=94.97 E-value=0.0089 Score=52.03 Aligned_cols=22 Identities=18% Similarity=0.108 Sum_probs=19.4
Q ss_pred cccchhhcHHhchhccccchhh
Q psy4925 60 RCIACKLCEAICPAQAITIEAE 81 (160)
Q Consensus 60 ~Ci~Cg~Cv~~CP~~~i~~~~~ 81 (160)
.|+.||.|+.+||++||.....
T Consensus 219 ~C~~CG~Cv~vCP~gAl~~~~~ 240 (783)
T 3i9v_3 219 PSGFSGNITDICPVGALLDLTA 240 (783)
T ss_dssp CSTTTTTHHHHCSSSSEEEGGG
T ss_pred CCccchhHHhhcccCceecccc
Confidence 6999999999999999986543
No 78
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=94.74 E-value=0.0076 Score=54.94 Aligned_cols=25 Identities=32% Similarity=0.631 Sum_probs=22.4
Q ss_pred cccCccCCcCcccchhccccccccc
Q psy4925 93 YDIDMTKCIYCGFCQEACPVDAIVE 117 (160)
Q Consensus 93 ~~~~~~~C~~Cg~C~~~CP~~ai~~ 117 (160)
...+...|+.||.|+.+||.+||..
T Consensus 681 p~~d~~kCi~Cg~Cv~vCP~~AI~~ 705 (1231)
T 2c42_A 681 PQWVPENCIQCNQCAFVCPHSAILP 705 (1231)
T ss_dssp EEECTTTCCCCCHHHHHCSSCCEEE
T ss_pred eEEeCccCCchhhHHHhCCcccccc
Confidence 4568899999999999999999975
No 79
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=94.46 E-value=0.0077 Score=50.59 Aligned_cols=28 Identities=29% Similarity=0.624 Sum_probs=23.7
Q ss_pred cCCCccccccchhhcHHhchhccccchh
Q psy4925 53 RYPSGEERCIACKLCEAICPAQAITIEA 80 (160)
Q Consensus 53 ~~~~~~~~Ci~Cg~Cv~~CP~~~i~~~~ 80 (160)
.+.++.+.|++||.|..+||+++|....
T Consensus 545 ~~~i~~~~Ci~C~~C~~~cp~~~i~~~~ 572 (584)
T 2gmh_A 545 RLQINAQNCVHCKTCDIKDPSQNINWVV 572 (584)
T ss_dssp EEEECGGGCCCCCHHHHHCTTCCEEECC
T ss_pred EEEEeCCCCcCCCCchhhCCCCCceeEC
Confidence 3456788999999999999999997654
No 80
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=93.26 E-value=0.015 Score=47.10 Aligned_cols=24 Identities=17% Similarity=0.440 Sum_probs=20.2
Q ss_pred CCCccccccchhhcHHhchhcccc
Q psy4925 54 YPSGEERCIACKLCEAICPAQAIT 77 (160)
Q Consensus 54 ~~~~~~~Ci~Cg~Cv~~CP~~~i~ 77 (160)
+.++.++|++|+.|+.+||.++..
T Consensus 279 ~~id~~~Ci~Cg~Ci~~CP~~~~~ 302 (418)
T 3mm5_A 279 LTIDNRECVRCMHCINKMPKALKP 302 (418)
T ss_dssp EEECTTTCCCCCHHHHHCTTTEEC
T ss_pred eEEChhhcCccChhHHhCcHhhcc
Confidence 446788999999999999997654
No 81
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=92.80 E-value=0.033 Score=41.28 Aligned_cols=21 Identities=24% Similarity=0.505 Sum_probs=17.9
Q ss_pred ccccccchhhcHHhchhcccc
Q psy4925 57 GEERCIACKLCEAICPAQAIT 77 (160)
Q Consensus 57 ~~~~Ci~Cg~Cv~~CP~~~i~ 77 (160)
+...|+.||.|+.+||+++..
T Consensus 202 ~~~~C~~Cg~C~~vCP~gi~~ 222 (238)
T 2wdq_B 202 SVFRCHSIMNCVSVCPKGLNP 222 (238)
T ss_dssp TTTTCCCCCHHHHHCTTCCCH
T ss_pred CCCcCcccchhhhhcCCCCCH
Confidence 456899999999999998654
No 82
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=92.11 E-value=0.043 Score=40.78 Aligned_cols=19 Identities=26% Similarity=0.746 Sum_probs=16.5
Q ss_pred ccccccchhhcHHhchhcc
Q psy4925 57 GEERCIACKLCEAICPAQA 75 (160)
Q Consensus 57 ~~~~Ci~Cg~Cv~~CP~~~ 75 (160)
+...|+.||.|+.+||+++
T Consensus 200 ~~~~C~~Cg~C~~vCP~gi 218 (243)
T 1kf6_B 200 GVWSCTFVGYCSEVCPKHV 218 (243)
T ss_dssp TGGGCCCCCHHHHHCTTCC
T ss_pred CcccCcccCCcchhCCCCC
Confidence 4568999999999999974
No 83
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=91.07 E-value=0.051 Score=40.75 Aligned_cols=22 Identities=27% Similarity=0.690 Sum_probs=18.8
Q ss_pred cCccCCcCcccchhcccccccc
Q psy4925 95 IDMTKCIYCGFCQEACPVDAIV 116 (160)
Q Consensus 95 ~~~~~C~~Cg~C~~~CP~~ai~ 116 (160)
.+...|+.||.|+.+||..++.
T Consensus 153 ~~~~~Ci~CG~C~~~CP~~~~~ 174 (252)
T 2h88_B 153 DGLYECILCACCSTSCPSYWWN 174 (252)
T ss_dssp TTTTTCCCCCTTGGGCHHHHHH
T ss_pred HhHHhchhhCcchhhCCCCccC
Confidence 4667899999999999998753
No 84
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=90.21 E-value=0.048 Score=40.54 Aligned_cols=21 Identities=33% Similarity=0.958 Sum_probs=18.3
Q ss_pred CccCCcCcccchhcccccccc
Q psy4925 96 DMTKCIYCGFCQEACPVDAIV 116 (160)
Q Consensus 96 ~~~~C~~Cg~C~~~CP~~ai~ 116 (160)
+...|+.||.|+.+||+.++.
T Consensus 147 ~~~~Ci~Cg~C~~~CP~~~~~ 167 (241)
T 2bs2_B 147 ELDRCIECGCCIAACGTKIMR 167 (241)
T ss_dssp HHHTCCCCCHHHHTCHHHHHC
T ss_pred hhhhhhccCcCcccCCCCccC
Confidence 456799999999999999864
No 85
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*
Probab=90.00 E-value=0.067 Score=43.49 Aligned_cols=24 Identities=17% Similarity=0.411 Sum_probs=19.8
Q ss_pred CCCccccccchhhcHHhchhcccc
Q psy4925 54 YPSGEERCIACKLCEAICPAQAIT 77 (160)
Q Consensus 54 ~~~~~~~Ci~Cg~Cv~~CP~~~i~ 77 (160)
+.++.++|+.|+.|+.+||..+..
T Consensus 296 l~Id~~~C~~Cg~Ci~~CP~al~~ 319 (437)
T 3or1_A 296 LSIDNKNCTRCMHCINTMPRALKI 319 (437)
T ss_dssp EEECGGGCCCCSHHHHHCTTTEEC
T ss_pred EEEccccCCchhhhHhhCcHhhcc
Confidence 446788999999999999986543
No 86
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=89.95 E-value=0.074 Score=47.57 Aligned_cols=29 Identities=38% Similarity=0.617 Sum_probs=24.1
Q ss_pred ccccCccCCcCcccchhcccc---cccccCCc
Q psy4925 92 RYDIDMTKCIYCGFCQEACPV---DAIVEGPN 120 (160)
Q Consensus 92 ~~~~~~~~C~~Cg~C~~~CP~---~ai~~~~~ 120 (160)
...++...|+.||.|+.+||. +||.+...
T Consensus 945 ~~~id~~~C~~Cg~C~~~CP~~~~~ai~~~~~ 976 (1025)
T 1gte_A 945 VAVIDEEMCINCGKCYMTCNDSGYQAIQFDPE 976 (1025)
T ss_dssp EEEECTTTCCCCCHHHHHHHHHSCSCEEECTT
T ss_pred eEEEEcccCcccCHHHHhcCccccCCEEEeCC
Confidence 345788899999999999996 89887553
No 87
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D
Probab=88.87 E-value=0.1 Score=39.57 Aligned_cols=24 Identities=29% Similarity=0.618 Sum_probs=19.6
Q ss_pred CccccccchhhcHHhchhccccchh
Q psy4925 56 SGEERCIACKLCEAICPAQAITIEA 80 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~~~ 80 (160)
.+..+|+.|+.|+.+|| +++....
T Consensus 198 ~d~~~C~~C~~C~~vCp-~aI~~~~ 221 (265)
T 2pa8_D 198 KNELSCTLCEECLRYCN-GSIRISF 221 (265)
T ss_dssp SCGGGCCCCCHHHHHHT-TSEEEEE
T ss_pred eccccCCCchHHHHhCC-CceEEEe
Confidence 35578999999999999 8876543
No 88
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=88.09 E-value=0.12 Score=43.66 Aligned_cols=23 Identities=39% Similarity=0.888 Sum_probs=20.1
Q ss_pred CccccccchhhcHHhchhccccc
Q psy4925 56 SGEERCIACKLCEAICPAQAITI 78 (160)
Q Consensus 56 ~~~~~Ci~Cg~Cv~~CP~~~i~~ 78 (160)
+.+..|++||.|++.||..+|.+
T Consensus 64 i~e~~c~gc~~~~~~~p~~~i~i 86 (607)
T 3bk7_A 64 IQEASCTGCGICVHKCPFNAISI 86 (607)
T ss_dssp ECTTTCCCCCHHHHHCSSCCCEE
T ss_pred eeecccCccccccCCCCcceEEE
Confidence 45678999999999999988876
No 89
>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=83.14 E-value=0.26 Score=43.07 Aligned_cols=21 Identities=29% Similarity=0.950 Sum_probs=18.1
Q ss_pred cccccchhhcHHhchhccccc
Q psy4925 58 EERCIACKLCEAICPAQAITI 78 (160)
Q Consensus 58 ~~~Ci~Cg~Cv~~CP~~~i~~ 78 (160)
.+.|+.||.|+.+||+++...
T Consensus 452 ~~~Ci~Cg~C~~vCP~ga~~~ 472 (807)
T 3cf4_A 452 HDTCIGCRRCEQVCKKEIPIL 472 (807)
T ss_dssp HHHCCCCCHHHHHCTTCCCHH
T ss_pred hhhccchhhHHHhCCCCCChH
Confidence 468999999999999987654
No 90
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=81.82 E-value=0.32 Score=37.25 Aligned_cols=18 Identities=33% Similarity=0.901 Sum_probs=15.6
Q ss_pred cCCcCcccchhccccccc
Q psy4925 98 TKCIYCGFCQEACPVDAI 115 (160)
Q Consensus 98 ~~C~~Cg~C~~~CP~~ai 115 (160)
..|+.||.|..+||.-..
T Consensus 180 ~~CI~CG~C~~aCP~~~~ 197 (282)
T 3vr8_B 180 YECILCACCSASCPSYWW 197 (282)
T ss_pred hhCcccCcCcccCCceec
Confidence 469999999999998754
No 91
>3kwl_A Uncharacterized protein; putative oxidoreductase, multidomain, unknown function; 1.94A {Helicobacter pylori}
Probab=68.85 E-value=0.8 Score=37.91 Aligned_cols=16 Identities=6% Similarity=0.027 Sum_probs=13.9
Q ss_pred CccCCcCcccchhccccc
Q psy4925 96 DMTKCIYCGFCQEACPVD 113 (160)
Q Consensus 96 ~~~~C~~Cg~C~~~CP~~ 113 (160)
..+.|+.| |.++||.+
T Consensus 190 gv~~C~~~--C~~~CPk~ 205 (514)
T 3kwl_A 190 GVMNFLSV--AHYLYKND 205 (514)
T ss_dssp SGGGCCCC--GGGBTTCC
T ss_pred cccccccc--ccccCCCC
Confidence 45689999 99999987
No 92
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=62.75 E-value=0.5 Score=38.33 Aligned_cols=19 Identities=32% Similarity=0.990 Sum_probs=15.9
Q ss_pred ccccccchhh--cHHhchhcc
Q psy4925 57 GEERCIACKL--CEAICPAQA 75 (160)
Q Consensus 57 ~~~~Ci~Cg~--Cv~~CP~~~ 75 (160)
..++|..|+. |...||.+.
T Consensus 18 ~a~rc~~c~~~~C~~~CP~~~ 38 (456)
T 2vdc_G 18 QANRCSQCGVPFCQVHCPVSN 38 (456)
T ss_dssp HHHHSCCCSSCHHHHTSTTCC
T ss_pred HHHhhhcCCCchhhcCCCCCC
Confidence 3678999994 999999864
No 93
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Probab=47.45 E-value=3 Score=34.23 Aligned_cols=18 Identities=33% Similarity=1.064 Sum_probs=13.8
Q ss_pred cccch------hhcHHhchhcccc
Q psy4925 60 RCIAC------KLCEAICPAQAIT 77 (160)
Q Consensus 60 ~Ci~C------g~Cv~~CP~~~i~ 77 (160)
.|..| |.||..||.+.+.
T Consensus 217 ~C~aC~~~~~~g~Cv~~CP~~~y~ 240 (478)
T 1igr_A 217 ACVACRHYYYAGVCVPACPPNTYR 240 (478)
T ss_dssp SEEEESSEECSSSEESSCCTTCEE
T ss_pred ceeeeeeeccCCcCcccCCCceeE
Confidence 38888 4899999986544
No 94
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E
Probab=41.55 E-value=3 Score=36.58 Aligned_cols=16 Identities=38% Similarity=1.051 Sum_probs=12.6
Q ss_pred ccch------hhcHHhchhccc
Q psy4925 61 CIAC------KLCEAICPAQAI 76 (160)
Q Consensus 61 Ci~C------g~Cv~~CP~~~i 76 (160)
|..| |.|+..||.+-+
T Consensus 225 C~~C~~~~~~~~Cv~~Cp~~~y 246 (897)
T 2dtg_E 225 CVACRNFYLDGRCVETCPPPYY 246 (897)
T ss_dssp EECCSSCBBTTBCCSSCCSSCC
T ss_pred eeECccCccCCcchhhcCCcee
Confidence 8777 589999997644
No 95
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=41.42 E-value=2.9 Score=29.23 Aligned_cols=18 Identities=11% Similarity=0.145 Sum_probs=15.4
Q ss_pred ccCccCCcCcccchhccc
Q psy4925 94 DIDMTKCIYCGFCQEACP 111 (160)
Q Consensus 94 ~~~~~~C~~Cg~C~~~CP 111 (160)
..+..+|++|+.|+++|-
T Consensus 138 ~gnlcRCt~y~~~v~A~~ 155 (168)
T 1t3q_A 138 SGNLCRCTGYETIIDAIT 155 (168)
T ss_dssp GGSCCSSSCSHHHHHHHT
T ss_pred cCCcccCCCchHHHHHHH
Confidence 457789999999999984
No 96
>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor, transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A* 1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A
Probab=29.45 E-value=13 Score=31.35 Aligned_cols=19 Identities=26% Similarity=0.856 Sum_probs=14.4
Q ss_pred CccCCcCc------ccchhcccccc
Q psy4925 96 DMTKCIYC------GFCQEACPVDA 114 (160)
Q Consensus 96 ~~~~C~~C------g~C~~~CP~~a 114 (160)
....|+.| |.|++.||.+-
T Consensus 559 ~~~~C~~C~~~~~~g~Cv~~CP~g~ 583 (608)
T 1n8y_C 559 EADQCAACAHYKDSSSCVARCPSGV 583 (608)
T ss_dssp SGGGBSSBSSEEETTEEESSCCEEE
T ss_pred CCCCCccccccCcCCeEcccCCCCc
Confidence 44567777 68999999884
No 97
>3i9v_1 NADH-quinone oxidoreductase subunit 1; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_1* 2fug_1* 3iam_1* 3ias_1* 3m9s_1*
Probab=29.11 E-value=3 Score=33.87 Aligned_cols=55 Identities=16% Similarity=0.205 Sum_probs=29.0
Q ss_pred cccccchhhcHHhch---hccccchhhhhcCCCccccccccCccCCcC-cccchhcccccc
Q psy4925 58 EERCIACKLCEAICP---AQAITIEAEERADGSRRTTRYDIDMTKCIY-CGFCQEACPVDA 114 (160)
Q Consensus 58 ~~~Ci~Cg~Cv~~CP---~~~i~~~~~~~~~~~~~~~~~~~~~~~C~~-Cg~C~~~CP~~a 114 (160)
.+.|.+|..|...|| ...+..- ..+.++........+...|+. |+.|.-.|+...
T Consensus 350 ~ESCgqCtpCr~Gt~~~l~~lL~ri--~~G~g~~~dld~L~~l~~~i~~~s~C~lg~~A~~ 408 (438)
T 3i9v_1 350 HESCGKCTPCREGVAGFMVNLFAKI--GTGQGEEKDVENLEALLPLIEGRSFCPLADAAVW 408 (438)
T ss_dssp HHCCSCCHHHHTTTTTHHHHHHHHH--TTTCCCHHHHHHHHHHHHHHTTCCSSTHHHHHHH
T ss_pred hhhCCCCccchhhHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHccCCCCcCcHhHHH
Confidence 467999999999999 3332211 111111111111123334554 788887776553
No 98
>2kmz_A Tumor necrosis factor receptor superfamily member; FN14, tweak, TNF receptor, CRD, tnfrsf12A, angiogenesis, APO cell adhesion; NMR {Homo sapiens}
Probab=23.97 E-value=25 Score=19.28 Aligned_cols=12 Identities=25% Similarity=1.054 Sum_probs=9.0
Q ss_pred Cccccccchhhc
Q psy4925 56 SGEERCIACKLC 67 (160)
Q Consensus 56 ~~~~~Ci~Cg~C 67 (160)
.|-++|+.|..|
T Consensus 17 ~DLdKCmdcs~C 28 (53)
T 2kmz_A 17 ADLDKCMDCASC 28 (53)
T ss_dssp TTTTCCBCSTTC
T ss_pred hhhhhhhccccC
Confidence 356789999866
Done!