RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4925
(160 letters)
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport,
respiratory chain, cell flavoprotein, FMN, iron,
iron-sulfur, membrane; HET: FMN; 3.10A {Thermus
thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9*
3m9s_9*
Length = 182
Score = 240 bits (614), Expect = 1e-82
Identities = 55/157 (35%), Positives = 81/157 (51%), Gaps = 6/157 (3%)
Query: 10 FLTEIFRGFFVATGHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEA 69
L + + + ++F +P T+ YP L PRF G H L R+P+G E+CI C LC A
Sbjct: 2 TLKALAQSLGITLKYLFSKPVTVPYPDAPVALKPRFHGRHVLTRHPNGLEKCIGCSLCAA 61
Query: 70 ICPAQAITIEAEERAD------GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEF 123
CPA AI +E E G R Y+I+M +CI+CG C+EACP AIV G +FE
Sbjct: 62 ACPAYAIYVEPAENDPENPVSAGERYAKVYEINMLRCIFCGLCEEACPTGAIVLGYDFEM 121
Query: 124 STESHEELLYNKEKLLSNGDKWESEIASNIHADHLYR 160
+ + +L+Y KE +L + + + +
Sbjct: 122 ADYEYSDLVYGKEDMLVDVVGTKPQRREAKRTGKPVK 158
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A
{Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Length = 103
Score = 77.6 bits (191), Expect = 1e-19
Identities = 19/94 (20%), Positives = 29/94 (30%), Gaps = 7/94 (7%)
Query: 27 KEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERADG 86
+ P E + + + CIA C CP +
Sbjct: 16 HSGHKVYGPVEPPXVLGIHGTIVGVD-----FDLCIADGSCINACPVNVFQWY-DTPGHP 69
Query: 87 SRRTTRYDIDMTKCIYCGFCQEACPVDAI-VEGP 119
+ ++ CI+C C CPV AI V+ P
Sbjct: 70 ASEKKADPVNEQACIFCMACVNVCPVAAIDVKPP 103
Score = 37.6 bits (87), Expect = 2e-04
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 91 TRYDIDMTKCIYCGFCQEACPVDAIVEGPN 120
T +D CI G C ACPV+
Sbjct: 36 TIVGVDFDLCIADGSCINACPVNVFQWYDT 65
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction
potential, iron binding protein electron transport;
1.32A {Pseudomonas aeruginosa}
Length = 82
Score = 66.2 bits (162), Expect = 2e-15
Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 19/86 (22%)
Query: 59 ERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYC------GFCQEACPV 112
+ CI C +CE CP AI+ E Y ID C C CQ+ CPV
Sbjct: 6 DDCINCDVCEPECPNGAISQGEE----------IYVIDPNLCTECVGHYDEPQCQQVCPV 55
Query: 113 DAIVEGPNFEFSTESHEELLYNKEKL 138
D I ES ++L+ K+
Sbjct: 56 DCIPLDDAN---VESKDQLMEKYRKI 78
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport,
[4Fe-4S] clusters, iron-SULF clusters, reduction
potential; 1.65A {Escherichia coli}
Length = 85
Score = 66.3 bits (162), Expect = 2e-15
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 21/93 (22%)
Query: 59 ERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYC------GFCQEACPV 112
++CI C +CE CP +AI++ Y+I+ KC C CQ+ CP+
Sbjct: 6 KKCINCDMCEPECPNEAISMGDH----------IYEINSDKCTECVGHYETPTCQKVCPI 55
Query: 113 -DAIVEGPNFEFSTESHEELLYNKEKLLSNGDK 144
+ IV+ P E+ E+L K L+ + DK
Sbjct: 56 PNTIVKDPAH---VETEEQLWD-KFVLMHHADK 84
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron,
iron-sulfur, metal-binding, transport; 1.05A
{Allochromatium vinosum} PDB: 1blu_A 3exy_A
Length = 82
Score = 64.7 bits (158), Expect = 7e-15
Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 19/91 (20%)
Query: 58 EERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYC-GF-----CQEACP 111
+ CI C +CE CP AI+ E Y I+ + C C G C E CP
Sbjct: 5 TDECINCDVCEPECPNGAISQGDE----------TYVIEPSLCTECVGHYETSQCVEVCP 54
Query: 112 VDAIVEGPNFEFSTESHEELLYNKEKLLSNG 142
VDAI++ P+ E E+ +EL E++ G
Sbjct: 55 VDAIIKDPSHE---ETEDELRAKYERITGEG 82
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP:
d.58.1.1
Length = 80
Score = 64.0 bits (156), Expect = 1e-14
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 19/86 (22%)
Query: 59 ERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYC------GFCQEACPV 112
+ C AC C CP +AIT Y ID TKC C C+ CP
Sbjct: 6 DDCTACDACVEECPNEAITPG----------DPIYVIDPTKCSECVGAFDEPQCRLVCPA 55
Query: 113 DAIVEGPNFEFSTESHEELLYNKEKL 138
D I + P++ E+ EEL ++L
Sbjct: 56 DCIPDNPDY---RETREELQEKYDRL 78
>1jb0_C Photosystem I iron-sulfur center; membrane protein,
multiprotein-pigment complex, photosynthes; HET: CL1 PQN
BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP:
d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C*
3lw5_C* 2o01_C*
Length = 80
Score = 61.0 bits (148), Expect = 2e-13
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 58 EERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 115
+ CI C C CP + + + + + + C+ C C+ ACP D +
Sbjct: 7 YDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASSPRTE--DCVGCKRCETACPTDFL 62
Score = 40.2 bits (94), Expect = 2e-05
Identities = 12/50 (24%), Positives = 19/50 (38%)
Query: 41 LSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERADGSRRT 90
+ P + E C+ CK CE CP ++I A+ +R
Sbjct: 27 MVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFLSIRVYLGAETTRSM 76
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A
{Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A
1fca_A 1clf_A 1dur_A
Length = 55
Score = 59.2 bits (144), Expect = 4e-13
Identities = 25/60 (41%), Positives = 29/60 (48%), Gaps = 10/60 (16%)
Query: 59 ERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 118
E CI+C CE CP AI+ + RY ID CI CG C CPVDA V+
Sbjct: 6 EACISCGACEPECPVNAISSGDD----------RYVIDADTCIDCGACAGVCPVDAPVQA 55
Score = 38.4 bits (90), Expect = 4e-05
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 99 KCIYCGFCQEACPVDAIVEGPNF 121
CI CG C+ CPV+AI G +
Sbjct: 7 ACISCGACEPECPVNAISSGDDR 29
Score = 28.0 bits (63), Expect = 0.27
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 58 EERCIACKLCEAICPAQAI 76
+ CI C C +CP A
Sbjct: 34 ADTCIDCGACAGVCPVDAP 52
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit));
hydrogene metabolism, periplasm; 1.60A {Desulfovibrio
vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A*
1gx7_A*
Length = 421
Score = 59.3 bits (144), Expect = 3e-11
Identities = 24/87 (27%), Positives = 31/87 (35%), Gaps = 18/87 (20%)
Query: 58 EERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVE 117
E +CI C C CP AI G + CI CG C CP +AI E
Sbjct: 32 EAKCIGCDTCSQYCPTAAIF--------GEMGEPHSIPHIEACINCGQCLTHCPENAIYE 83
Query: 118 GPNFEFSTESHEELLYNKEKLLSNGDK 144
++ E+ K L +G
Sbjct: 84 AQSW------VPEVE----KKLKDGKV 100
Score = 43.2 bits (102), Expect = 1e-05
Identities = 13/35 (37%), Positives = 14/35 (40%)
Query: 95 IDMTKCIYCGFCQEACPVDAIVEGPNFEFSTESHE 129
ID KCI C C + CP AI S E
Sbjct: 30 IDEAKCIGCDTCSQYCPTAAIFGEMGEPHSIPHIE 64
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB:
1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Length = 150
Score = 54.7 bits (131), Expect = 3e-10
Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 12/101 (11%)
Query: 58 EERCIACK-----LCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPV 112
E+C CK CE ICP +T++ E+ Y+ + C C C + CP
Sbjct: 7 PEKCDGCKALERTACEYICPNDLMTLDKEKM-------KAYNREPDMCWECYSCVKMCPQ 59
Query: 113 DAIVEGPNFEFSTESHEELLYNKEKLLSNGDKWESEIASNI 153
AI ++S + + K+ +
Sbjct: 60 GAIDVRGYVDYSPLGGACVPMRGTSDIMWTVKYRNGKVLRF 100
Score = 34.3 bits (78), Expect = 0.006
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 5/27 (18%)
Query: 95 IDMTKCIYCG-----FCQEACPVDAIV 116
++ KC C C+ CP D +
Sbjct: 5 VNPEKCDGCKALERTACEYICPNDLMT 31
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur
binding, oxidoreductase; HET: HCN; 1.39A {Clostridium
pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB:
1c4c_A* 1c4a_A* 1feh_A*
Length = 574
Score = 54.3 bits (131), Expect = 2e-09
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 58 EERCIACKLCEAICPAQAIT--IEAEERADGSRRTTRYD--IDMTKCIYCGFCQEACPVD 113
+C+ C C C T ++ + + + D T C+ CG C ACPV
Sbjct: 144 RTKCLLCGRCVNACGKNTETYAMKFLNKNGKTIIGAEDEKCFDDTNCLLCGQCIIACPVA 203
Query: 114 AIVEGPNFEF 123
A+ E + +
Sbjct: 204 ALSEKSHMDR 213
Score = 40.9 bits (96), Expect = 7e-05
Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 7/58 (12%)
Query: 64 CKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNF 121
+ + P E R+ +D TKC+ CG C AC + F
Sbjct: 118 ARASKPFLPKDKTEYVDE-------RSKSLTVDRTKCLLCGRCVNACGKNTETYAMKF 168
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 166
Score = 51.4 bits (122), Expect = 6e-09
Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 12/94 (12%)
Query: 58 EERCIACK-----LCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPV 112
+C CK C ICP + ++ EE ++ + C C C + CP
Sbjct: 6 PSKCDGCKGGEKTACMYICPNDLMILDPEEMK-------AFNQEPEACWECYSCIKICPQ 58
Query: 113 DAIVEGPNFEFSTESHEELLYNKEKLLSNGDKWE 146
AI P +F+ + + + K+
Sbjct: 59 GAITARPYADFAPMGGTCIPLRGSEDIMWTIKFR 92
Score = 33.7 bits (76), Expect = 0.012
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 5/31 (16%)
Query: 95 IDMTKCIYCG-----FCQEACPVDAIVEGPN 120
+D +KC C C CP D ++ P
Sbjct: 4 VDPSKCDGCKGGEKTACMYICPNDLMILDPE 34
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU
subunit; oxidoreductase, selenium, selenocysteine,
seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia
coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Length = 294
Score = 42.9 bits (101), Expect = 1e-05
Identities = 24/102 (23%), Positives = 35/102 (34%), Gaps = 26/102 (25%)
Query: 50 ALRRYPSG-----EERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYC- 103
A+ +Y +G E CI C C A CP + E+ + KC C
Sbjct: 117 AIIQYANGIVDFQSENCIGCGYCIAGCPFNIPRLNKEDNR------------VYKCTLCV 164
Query: 104 -----GF---CQEACPVDAIVEGPNFEFSTESHEELLYNKEK 137
G C + CP AI G E + + + K +
Sbjct: 165 DRVSVGQEPACVKTCPTGAIHFGTKKEMLELAEQRVAKLKAR 206
Score = 36.7 bits (85), Expect = 0.002
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 8/49 (16%)
Query: 67 CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 115
C CP+ I+ +G + + CI CG+C CP +
Sbjct: 108 CLKACPSAGAIIQYA---NG---IVDFQSE--NCIGCGYCIAGCPFNIP 148
Score = 31.7 bits (72), Expect = 0.077
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 95 IDMTKCIYCGFCQEAC 110
ID++ CI C CQ AC
Sbjct: 34 IDVSTCIGCKACQVAC 49
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon
degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO
reductase family; HET: MES MGD MD1 HEM; 1.88A
{Aromatoleum aromaticum}
Length = 352
Score = 41.9 bits (98), Expect = 3e-05
Identities = 17/70 (24%), Positives = 21/70 (30%), Gaps = 21/70 (30%)
Query: 58 EERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYC------GF---CQE 108
+ERC + C CP +AI + KCI C G C
Sbjct: 181 QERCKGHRHCVEACPYKAIYFNPVSQT------------SEKCILCYPRIEKGIANACNR 228
Query: 109 ACPVDAIVEG 118
CP G
Sbjct: 229 QCPGRVRAFG 238
Score = 37.7 bits (87), Expect = 0.001
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 8/49 (16%)
Query: 67 CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 115
C A CP AI + +G +D +C C EACP AI
Sbjct: 159 CLAACPTGAIYKRED---NG-----IVLVDQERCKGHRHCVEACPYKAI 199
Score = 26.5 bits (58), Expect = 5.1
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 95 IDMTKCIYCGFCQEAC 110
ID+ KC+ C C AC
Sbjct: 23 IDLNKCLGCQTCTVAC 38
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN FAD;
1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1
d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 42.1 bits (99), Expect = 3e-05
Identities = 17/63 (26%), Positives = 20/63 (31%), Gaps = 12/63 (19%)
Query: 58 EERCIACKLCEAICPA---QAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDA 114
EE CI C C C QAI + E T C C C CP+
Sbjct: 950 EEMCINCGKCYMTCNDSGYQAIQFDPE---------THLPTVTDTCTGCTLCLSVCPIID 1000
Query: 115 IVE 117
+
Sbjct: 1001 CIR 1003
Score = 30.2 bits (68), Expect = 0.31
Identities = 12/61 (19%), Positives = 17/61 (27%), Gaps = 3/61 (4%)
Query: 54 YPSGEERCIACKLCEAIC---PAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEAC 110
+P E + K +A+ + ID CI CG C C
Sbjct: 904 FPPLERKPFIPKKPIPAIKDVIGKALQYLGTFGELSNIEQVVAVIDEEMCINCGKCYMTC 963
Query: 111 P 111
Sbjct: 964 N 964
Score = 28.6 bits (64), Expect = 0.88
Identities = 6/15 (40%), Positives = 9/15 (60%), Gaps = 2/15 (13%)
Query: 100 CIYCG--FCQEACPV 112
C+ C CQ++CP
Sbjct: 79 CLKCADAPCQKSCPT 93
Score = 28.2 bits (63), Expect = 1.3
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 52 RRYPSGEERCIACKLCEAICP-AQAITIEAEE 82
P+ + C C LC ++CP I + +
Sbjct: 977 THLPTVTDTCTGCTLCLSVCPIIDCIRMVSRT 1008
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide,
iron-sulfur, metal-binding, molybdopterin; HET: MGD;
2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B*
2vpy_B*
Length = 195
Score = 40.8 bits (96), Expect = 4e-05
Identities = 16/68 (23%), Positives = 20/68 (29%), Gaps = 22/68 (32%)
Query: 58 EERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCG---------FCQE 108
++CIAC C A CP A + KC +C C E
Sbjct: 87 PKKCIACGACIAACPYDARYLHPAGYVS-------------KCTFCAHRLEKGKVPACVE 133
Query: 109 ACPVDAIV 116
CP
Sbjct: 134 TCPTYCRT 141
Score = 40.0 bits (94), Expect = 7e-05
Identities = 18/49 (36%), Positives = 20/49 (40%), Gaps = 9/49 (18%)
Query: 67 CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 115
C +CP A DG +D KCI CG C ACP DA
Sbjct: 66 CVPVCPTGASYQ----TKDG-----LVLVDPKKCIACGACIAACPYDAR 105
Score = 30.8 bits (70), Expect = 0.12
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 95 IDMTKCIYCGFCQEAC 110
ID++ C+ C C AC
Sbjct: 8 IDLSLCVGCAACAVAC 23
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur;
1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB:
1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A
1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A
1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Length = 106
Score = 39.2 bits (92), Expect = 5e-05
Identities = 17/61 (27%), Positives = 21/61 (34%), Gaps = 12/61 (19%)
Query: 59 ERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 116
+ CI CK C +CP E I +CI C C+ CP AI
Sbjct: 6 DNCIKCKYTDCVEVCPVDCFY-EGPNF---------LVIHPDECIDCALCEPECPAQAIF 55
Query: 117 E 117
Sbjct: 56 S 56
Score = 34.2 bits (79), Expect = 0.004
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 99 KCIYCGF--CQEACPVDAIVEGPNF 121
CI C + C E CPVD EGPNF
Sbjct: 7 NCIKCKYTDCVEVCPVDCFYEGPNF 31
Score = 31.9 bits (73), Expect = 0.025
Identities = 15/27 (55%), Positives = 16/27 (59%)
Query: 59 ERCIACKLCEAICPAQAITIEAEERAD 85
+ CI C LCE CPAQAI E E D
Sbjct: 37 DECIDCALCEPECPAQAIFSEDEVPED 63
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium
tuberculosis, Fe cluster, metal-binding, electron
transfer, transport; 1.6A {Mycobacterium smegmatis}
Length = 105
Score = 39.3 bits (92), Expect = 6e-05
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 12/60 (20%)
Query: 59 ERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 116
E C+ K C CP I +G+R I +C+ CG C+ CPV+AI
Sbjct: 6 EPCVDVKDKACIEECPVDCI-------YEGARM---LYIHPDECVDCGACEPVCPVEAIY 55
Score = 32.7 bits (75), Expect = 0.012
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 59 ERCIACKLCEAICPAQAITIEAEERAD 85
+ C+ C CE +CP +AI E +
Sbjct: 37 DECVDCGACEPVCPVEAIYYEDDVPDQ 63
Score = 32.7 bits (75), Expect = 0.012
Identities = 10/25 (40%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 99 KCIYCGF--CQEACPVDAIVEGPNF 121
C+ C E CPVD I EG
Sbjct: 7 PCVDVKDKACIEECPVDCIYEGARM 31
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein,
electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA
3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB:
1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B*
3ir7_B* 1y4z_B* 3egw_B*
Length = 512
Score = 40.8 bits (95), Expect = 7e-05
Identities = 13/71 (18%), Positives = 21/71 (29%), Gaps = 21/71 (29%)
Query: 58 EERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCG---------FCQE 108
+++C ++C CP + I + KCI+C C E
Sbjct: 214 QDKCRGWRMCITGCPYKKIYFNWKSGK------------SEKCIFCYPRIEAGQPTVCSE 261
Query: 109 ACPVDAIVEGP 119
C G
Sbjct: 262 TCVGRIRYLGV 272
Score = 40.0 bits (93), Expect = 1e-04
Identities = 17/49 (34%), Positives = 18/49 (36%), Gaps = 8/49 (16%)
Query: 67 CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 115
C A CP+ AI E DG ID KC C CP I
Sbjct: 192 CVATCPSGAIYKREE---DG-----IVLIDQDKCRGWRMCITGCPYKKI 232
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur,
azotobacter, hydrogen bonds, stability, high resolution;
1.64A {Thermus aquaticus} SCOP: d.58.1.2
Length = 78
Score = 37.6 bits (88), Expect = 1e-04
Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 12/60 (20%)
Query: 59 ERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 116
E CI K C +CP + I DG + I +CI CG C ACPV+AI
Sbjct: 6 EPCIGVKDQSCVEVCPVECI-------YDGGDQFY---IHPEECIDCGACVPACPVNAIY 55
Score = 32.3 bits (74), Expect = 0.012
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 99 KCIYCGF--CQEACPVDAIVEGPNF 121
CI C E CPV+ I +G +
Sbjct: 7 PCIGVKDQSCVEVCPVECIYDGGDQ 31
Score = 31.5 bits (72), Expect = 0.024
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 59 ERCIACKLCEAICPAQAITIEAE 81
E CI C C CP AI E +
Sbjct: 37 EECIDCGACVPACPVNAIYPEED 59
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus
schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Length = 77
Score = 37.6 bits (88), Expect = 2e-04
Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 12/60 (20%)
Query: 59 ERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 116
E CI K C +CP I E E++ Y ID CI CG C+ CPV AI
Sbjct: 6 EPCIGTKDASCVEVCPVDCIH-EGEDQ---------YYIDPDVCIDCGACEAVCPVSAIY 55
Score = 32.2 bits (74), Expect = 0.015
Identities = 11/25 (44%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 99 KCIYCGF--CQEACPVDAIVEGPNF 121
CI C E CPVD I EG +
Sbjct: 7 PCIGTKDASCVEVCPVDCIHEGEDQ 31
Score = 31.4 bits (72), Expect = 0.026
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 59 ERCIACKLCEAICPAQAITIEAE 81
+ CI C CEA+CP AI E
Sbjct: 37 DVCIDCGACEAVCPVSAIYHEDF 59
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur,
iron-sulfur cluster, pyruvate catabolism, TPP-dependent
enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP:
c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB:
1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A*
2pda_A* 2uza_A*
Length = 1231
Score = 39.4 bits (92), Expect = 3e-04
Identities = 24/98 (24%), Positives = 33/98 (33%), Gaps = 29/98 (29%)
Query: 58 EERCIACKLCEAICPAQAI-----TIEAEERADGSRRTT------------RYDIDMTKC 100
E CI C C +CP AI E A + R I+ C
Sbjct: 685 PENCIQCNQCAFVCPHSAILPVLAKEEELVGAPANFTALEAKGKELKGYKFRIQINTLDC 744
Query: 101 IYCGFCQEACPV--DAIV----------EGPNFEFSTE 126
+ CG C + CP A+V + PN E++
Sbjct: 745 MGCGNCADICPPKEKALVMQPLDTQRDAQVPNLEYAAR 782
Score = 29.8 bits (67), Expect = 0.41
Identities = 8/20 (40%), Positives = 8/20 (40%)
Query: 96 DMTKCIYCGFCQEACPVDAI 115
CI C C CP AI
Sbjct: 684 VPENCIQCNQCAFVCPHSAI 703
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S
cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4
PDB: 1dfd_A 1fxr_A
Length = 64
Score = 36.2 bits (84), Expect = 3e-04
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 6/58 (10%)
Query: 58 EERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 115
++ CIAC+ C I P A ++ E + + + + CPV I
Sbjct: 8 QDECIACESCVEIAP-GAFAMDPE---IEKAYVKDVEGASQEEVEE--AMDTCPVQCI 59
Score = 26.2 bits (58), Expect = 1.5
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 95 IDMTKCIYCGFCQEACP 111
+D +CI C C E P
Sbjct: 6 VDQDECIACESCVEIAP 22
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding
enzyme, MGD-cofactors, DMSO-reductase family,
4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter
acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B*
1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Length = 274
Score = 38.7 bits (90), Expect = 3e-04
Identities = 11/71 (15%), Positives = 13/71 (18%), Gaps = 25/71 (35%)
Query: 58 EERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCG------------- 104
E+ K CP + EE KC C
Sbjct: 96 PEKAKGKKELLDTCPYGVMYWNEEENV------------AQKCTMCAHLLDDESWAPKMP 143
Query: 105 FCQEACPVDAI 115
C C
Sbjct: 144 RCAHNCGSFVY 154
Score = 34.8 bits (80), Expect = 0.007
Identities = 11/49 (22%), Positives = 14/49 (28%), Gaps = 10/49 (20%)
Query: 67 CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 115
C A A+ R DG ID K + CP +
Sbjct: 76 CVA-KGNGAVYQ----REDG-----IVLIDPEKAKGKKELLDTCPYGVM 114
Score = 31.4 bits (71), Expect = 0.10
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 95 IDMTKCIYCGFCQEAC 110
ID+ KC C C C
Sbjct: 8 IDVAKCQDCNNCFMGC 23
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate
reduction, oxidored sulfite reduction; HET: SRM; 1.76A
{Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Length = 386
Score = 37.3 bits (87), Expect = 0.001
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 64 CKLCEAI--CPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 120
C++ A+ CP A+ E ++ I+ +C+YCG C CP + +G
Sbjct: 222 CEIPLAVAACPTAAVKPITAEVNGQKVKSVA--INNDRCMYCGNCYTMCPALPLSDGTG 278
>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate
dehydrogenase, selenocysteine, molybdopterin, MGD,
iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A
{Desulfovibrio gigas} SCOP: d.58.1.5
Length = 214
Score = 37.0 bits (86), Expect = 0.001
Identities = 14/71 (19%), Positives = 19/71 (26%), Gaps = 21/71 (29%)
Query: 58 EERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYC------GF---CQE 108
+ + + CP AE M KC C G C
Sbjct: 107 TKDLEDYESVISACPYDVPRKVAESNQ------------MAKCDMCIDRITNGLRPACVT 154
Query: 109 ACPVDAIVEGP 119
+CP A+ G
Sbjct: 155 SCPTGAMNFGD 165
Score = 35.5 bits (82), Expect = 0.003
Identities = 8/49 (16%), Positives = 13/49 (26%), Gaps = 3/49 (6%)
Query: 67 CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 115
C+A + + + A G + ACP D
Sbjct: 80 CKATADMEDESAIIHDDATG---CVLFTPKTKDLEDYESVISACPYDVP 125
Score = 30.1 bits (68), Expect = 0.24
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 95 IDMTKCIYCGFCQEAC 110
+D T+C C CQ AC
Sbjct: 6 VDTTRCTACRGCQVAC 21
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET:
HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Length = 59
Score = 33.9 bits (78), Expect = 0.002
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 13/61 (21%)
Query: 58 EERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEA---CPVDA 114
E CI C+ C +CP I+ EE+A T D +C Q+A CPV+A
Sbjct: 6 HEECIGCESCVELCPEVFAMIDGEEKA----MVTAPDST-AECA-----QDAIDACPVEA 55
Query: 115 I 115
I
Sbjct: 56 I 56
Score = 25.8 bits (57), Expect = 1.7
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 95 IDMTKCIYCGFCQEACP 111
ID +CI C C E CP
Sbjct: 4 IDHEECIGCESCVELCP 20
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 35.8 bits (83), Expect = 0.004
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 6/61 (9%)
Query: 58 EERC--IACKL-CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDA 114
++C C+ C+ CP E S+ I CI CG C + CP DA
Sbjct: 13 ADKCKPKKCRQECKRSCPVVKTGKLCIEVTPTSKIAF---ISEILCIGCGICVKKCPFDA 69
Query: 115 I 115
I
Sbjct: 70 I 70
Score = 32.3 bits (74), Expect = 0.056
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 58 EERCIACKLCEAICPAQAITIE 79
E CI C +C CP AI I
Sbjct: 52 EILCIGCGICVKKCPFDAIQII 73
>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR
{Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A
Length = 58
Score = 32.9 bits (75), Expect = 0.005
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 13/61 (21%)
Query: 58 EERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEA---CPVDA 114
+ C+AC+ C ICP E ++A D D C+ +EA CP +A
Sbjct: 5 NDDCMACEACVEICPDVFEMNEEGDKA----VVINPDSD-LDCV-----EEAIDSCPAEA 54
Query: 115 I 115
I
Sbjct: 55 I 55
>3lx4_A Fe-hydrogenase; HYDA, H-cluster, [4Fe-4S] cluster, IR cluster,
insertion, biosynthesis, maturation, intermediate,
evolution; 1.97A {Chlamydomonas reinhardtii}
Length = 457
Score = 33.8 bits (77), Expect = 0.018
Identities = 1/26 (3%), Positives = 7/26 (26%)
Query: 92 RYDIDMTKCIYCGFCQEACPVDAIVE 117
+ ++ P+ + +
Sbjct: 5 HHHHHHSQDPNSAAPAAEAPLSHVQQ 30
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga
maritima} SCOP: d.58.1.4 PDB: 1vjw_A
Length = 60
Score = 31.1 bits (71), Expect = 0.026
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 24/66 (36%)
Query: 58 EERCIACKLCEAICPA--------QAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEA 109
+ CI C +CE +CP +A ++ E ++ ++
Sbjct: 7 ADACIGCGVCENLCPDVFQLGDDGKAKVLQPETDLPCAKD----------------AADS 50
Query: 110 CPVDAI 115
CP AI
Sbjct: 51 CPTGAI 56
Score = 27.2 bits (61), Expect = 0.53
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 92 RYDIDMTKCIYCGFCQEACP 111
+ +D CI CG C+ CP
Sbjct: 2 KVRVDADACIGCGVCENLCP 21
>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia,
iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A
{Methanosarcina barkeri}
Length = 807
Score = 33.2 bits (75), Expect = 0.032
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 58 EERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACP 111
+C C C CP + EA A + +I CI C C++ C
Sbjct: 414 VAKCADCGACLLACPEEIDIPEAMGFAKKGDFSYFEEIHD-TCIGCRRCEQVCK 466
Score = 25.9 bits (56), Expect = 7.0
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 61 CIACKLCEAICPAQAITIEAEERA 84
CI C+ CE +C + + E+
Sbjct: 455 CIGCRRCEQVCKKEIPILNVIEKI 478
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine
cobalt(III), electron transport; HET: NCO; 1.50A
{Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A
3pni_A
Length = 66
Score = 30.8 bits (70), Expect = 0.033
Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 20/66 (30%)
Query: 58 EERCIACKLCEAICPA--------QAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEA 109
++ CI +C ++CP +A + + EA
Sbjct: 8 QDTCIGDAICASLCPDVFEMNDEGKAQPKVEVIEDEELYNCAKE------------AMEA 55
Query: 110 CPVDAI 115
CPV AI
Sbjct: 56 CPVSAI 61
Score = 27.3 bits (61), Expect = 0.53
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 92 RYDIDMTKCIYCGFCQEACP 111
+ +D CI C CP
Sbjct: 3 KVSVDQDTCIGDAICASLCP 22
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding;
HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 32.7 bits (75), Expect = 0.045
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 58 EERCIACKLCEAICPAQAITIE 79
E C C +C CP AI+I
Sbjct: 66 EASCTGCGICVHKCPFNAISIV 87
Score = 32.3 bits (74), Expect = 0.049
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 58 EERCIACK----LCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVD 113
++C K LCE +CP + EA + + + I C CG C CP +
Sbjct: 26 YDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYKPI---IQEASCTGCGICVHKCPFN 82
Query: 114 AI 115
AI
Sbjct: 83 AI 84
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis,
geometry of [4Fe-4S] cluster, electron transport; 0.92A
{Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB:
1ir0_A 1wtf_A*
Length = 81
Score = 30.6 bits (69), Expect = 0.056
Identities = 19/75 (25%), Positives = 25/75 (33%), Gaps = 6/75 (8%)
Query: 59 ERCIACKLCEAICP---AQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 115
E CIAC C A P A D ++ + + F E CP D+I
Sbjct: 9 ETCIACGACGAAAPDIYDYDEDGIAYVTLDDNQGIVEVPDILIDDMMDAF--EGCPTDSI 66
Query: 116 -VEGPNFEFSTESHE 129
V F+ E
Sbjct: 67 KVADEPFDGDPNKFE 81
Score = 27.9 bits (62), Expect = 0.55
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 95 IDMTKCIYCGFCQEACP 111
+D CI CG C A P
Sbjct: 6 VDKETCIACGACGAAAP 22
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET;
alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A
{Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B*
3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Length = 366
Score = 31.5 bits (72), Expect = 0.092
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 13/61 (21%)
Query: 65 KLCE-----AICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 119
K CE A CP A+ + + + +D+ KC+YCG C CP + +
Sbjct: 209 KTCEIPSTVAACPTGALKPDMKNKT--------IKVDVEKCMYCGNCYTMCPGMPLFDPE 260
Query: 120 N 120
N
Sbjct: 261 N 261
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein,
reductase, mitochondria MEMB oxidoreductase; HET: FAD
HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Length = 282
Score = 30.9 bits (70), Expect = 0.14
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 96 DMTKCIYCGFCQEACPV 112
+ +CI C C +CP
Sbjct: 178 GLYECILCACCSASCPS 194
Score = 29.4 bits (66), Expect = 0.46
Identities = 18/70 (25%), Positives = 22/70 (31%), Gaps = 18/70 (25%)
Query: 60 RCIACKLCEAICP---------------AQAITIEAEERADGSR-RTTRYDIDMT--KCI 101
CI C C A CP QA + R D + R R + KC
Sbjct: 181 ECILCACCSASCPSYWWNADKYLGPAVLMQAYRWIIDSRDDSAAERLARMQDGFSAFKCH 240
Query: 102 YCGFCQEACP 111
C + CP
Sbjct: 241 TIMNCTKTCP 250
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein,
heme protein, iron sulfur PROT cytochrome B,
oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus
gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B*
3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B*
3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B*
3aee_B* ...
Length = 252
Score = 30.5 bits (69), Expect = 0.18
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 96 DMTKCIYCGFCQEACPV 112
+ +CI C C +CP
Sbjct: 154 GLYECILCACCSTSCPS 170
Score = 27.8 bits (62), Expect = 1.3
Identities = 15/70 (21%), Positives = 20/70 (28%), Gaps = 18/70 (25%)
Query: 60 RCIACKLCEAICP---------------AQAITIEAEERADGSR-RTTRYDIDMT--KCI 101
CI C C CP QA + R D + R + + +C
Sbjct: 157 ECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDYTEERLAQLQDPFSLYRCH 216
Query: 102 YCGFCQEACP 111
C CP
Sbjct: 217 TIMNCTRTCP 226
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate
reductace, succinate dehydrogenase, CO quinol, quinone,
oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia
coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B*
2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Length = 243
Score = 30.3 bits (69), Expect = 0.21
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 8/32 (25%)
Query: 81 EERADGSRRTTRYDIDMTKCIYCGFCQEACPV 112
+ A +Y + CI CG C ACP
Sbjct: 137 AQMA-------KYH-QFSGCINCGLCYAACPQ 160
Score = 28.4 bits (64), Expect = 0.91
Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 17/69 (24%)
Query: 60 RCIACKLCEAICP--------------AQAITIEAEERADGSR-RTTRYDIDMT--KCIY 102
CI C LC A CP A + R G + R + + C +
Sbjct: 147 GCINCGLCYAACPQFGLNPEFIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTF 206
Query: 103 CGFCQEACP 111
G+C E CP
Sbjct: 207 VGYCSEVCP 215
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S,
4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD
HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1
d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Length = 241
Score = 30.3 bits (69), Expect = 0.22
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 96 DMTKCIYCGFCQEACPV 112
++ +CI CG C AC
Sbjct: 147 ELDRCIECGCCIAACGT 163
Score = 28.0 bits (63), Expect = 1.3
Identities = 13/71 (18%), Positives = 20/71 (28%), Gaps = 20/71 (28%)
Query: 60 RCIACKLCEAICP--------------AQAITIEAEERADGSRRTTRYDIDMTK-----C 100
RCI C C A C + + + D Y++ C
Sbjct: 150 RCIECGCCIAACGTKIMREDFVGAAGLNRVVRFMIDPH-DERTDEDYYELIGDDDGVFGC 208
Query: 101 IYCGFCQEACP 111
+ C + CP
Sbjct: 209 MTLLACHDVCP 219
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport,
respiratory chain, cell flavoprotein, FMN, iron,
iron-sulfur, membrane; HET: FMN; 3.10A {Thermus
thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3*
3m9s_3*
Length = 783
Score = 30.2 bits (68), Expect = 0.28
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 59 ERCIACKLCEAICP--AQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 116
ERCI CK C ++ ER + T D + G + CPV A++
Sbjct: 179 ERCIHCKRCVRYFEEVPGDEVLDFIERGVHTFIGT-MD-FGLPSGFSGNITDICPVGALL 236
Query: 117 EGP 119
+
Sbjct: 237 DLT 239
Score = 27.9 bits (62), Expect = 1.7
Identities = 5/24 (20%), Positives = 11/24 (45%), Gaps = 4/24 (16%)
Query: 96 DMTKCIYCG----FCQEACPVDAI 115
D +CI+C + +E + +
Sbjct: 177 DRERCIHCKRCVRYFEEVPGDEVL 200
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate
dehydrogenase activity, cell inner membrane, trica acid
cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB:
1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B*
2wu5_B* 2wp9_B*
Length = 238
Score = 28.4 bits (64), Expect = 1.0
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 8/41 (19%)
Query: 72 PAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPV 112
PA+ E+R + D + +CI C C +CP
Sbjct: 129 PAREHLQMPEQRE-------KLD-GLYECILCACCSTSCPS 161
Score = 26.8 bits (60), Expect = 3.1
Identities = 14/73 (19%), Positives = 18/73 (24%), Gaps = 18/73 (24%)
Query: 57 GEERCIACKLCEAICP---------------AQAITIEAEER-ADGSRRTTRYDIDMT-- 98
G CI C C CP A + R + R +
Sbjct: 145 GLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSVF 204
Query: 99 KCIYCGFCQEACP 111
+C C CP
Sbjct: 205 RCHSIMNCVSVCP 217
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 1.1
Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 17/91 (18%)
Query: 41 LSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKC 100
+P GE LR Y G L A+ A+ + E+ + R+
Sbjct: 258 FTP---GE--LRSYLKGATGHSQ-GLVTAVAIAETDSWESFFVS--VRKAITV------L 303
Query: 101 IYCGF-CQEACPVDAIVEGPNFEFSTESHEE 130
+ G C EA P ++ P+ + + E
Sbjct: 304 FFIGVRCYEAYPNTSLP--PSILEDSLENNE 332
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 1.3
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 19/46 (41%)
Query: 37 EKGPLSPRFRGEHALRRY-PSGEERCIACKLCEAICPAQAIT--IE 79
EK L + + +L+ Y PA AI +E
Sbjct: 18 EKQALK---KLQASLKLYADDS-------------APALAIKATME 47
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase,
amidotransferase, ammonia assimilation, iron, zymogen;
HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Length = 456
Score = 27.5 bits (62), Expect = 2.0
Identities = 9/15 (60%), Positives = 9/15 (60%), Gaps = 2/15 (13%)
Query: 100 CIYCG--FCQEACPV 112
C CG FCQ CPV
Sbjct: 22 CSQCGVPFCQVHCPV 36
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo
sapiens}
Length = 78
Score = 26.2 bits (57), Expect = 2.2
Identities = 9/40 (22%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 38 KGPLSPRFRG-EHALRRYPSGEERCIACKLCEAICPAQAI 76
GP SP E A + C+ C+ A+
Sbjct: 6 SGPNSPSETRRERAFDANTMTSAEKVLCQFCDQDPAQDAV 45
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG
FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8
d.58.1.6 PDB: 2gmj_A*
Length = 584
Score = 27.1 bits (60), Expect = 2.8
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 61 CIACKLCEAICPAQAIT 77
C+ CK C+ P+Q I
Sbjct: 553 CVHCKTCDIKDPSQNIN 569
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 26.6 bits (58), Expect = 4.0
Identities = 16/85 (18%), Positives = 23/85 (27%), Gaps = 20/85 (23%)
Query: 41 LSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKC 100
++ + A RR P+ C C+ P +E D C
Sbjct: 2 MTRESIDKRAGRRGPNLNIVLT-CPECKVYPPK---IVERFSEGD------------VVC 45
Query: 101 IYCGFCQEACPVDAIVEGPNF-EFS 124
CG VD + FS
Sbjct: 46 ALCGLVLSDKLVD---TRSEWRTFS 67
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein,
serotonin, salivary gland, binding, ligand binging
protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis}
PDB: 3q6p_A* 3q6t_A*
Length = 381
Score = 26.2 bits (57), Expect = 5.0
Identities = 7/55 (12%), Positives = 16/55 (29%), Gaps = 7/55 (12%)
Query: 29 PATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEER 83
P T+ K L + + L ++ + + + I+ R
Sbjct: 52 PYTLAEVDTKNSLGVKGKHSPLLNKFSGHKT-------GKELTSIYQPVIDDCRR 99
>2owy_A Recombination-associated protein RDGC; homologous recombination,
RECA shaped DNA binding proteins, DNA binding protein;
2.50A {Pseudomonas aeruginosa}
Length = 306
Score = 25.7 bits (56), Expect = 9.3
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 24 HIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEER 83
+ A+ G +P +G A + S + I+ + E I P + +E+
Sbjct: 29 KSARPCASQE-LTTYGFTAPFGKGPDAPLVHVSQDFFLISARKEERILPGSVVRDALKEK 87
Query: 84 AD 85
D
Sbjct: 88 VD 89
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.435
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,567,041
Number of extensions: 147924
Number of successful extensions: 416
Number of sequences better than 10.0: 1
Number of HSP's gapped: 344
Number of HSP's successfully gapped: 113
Length of query: 160
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 74
Effective length of database: 4,300,587
Effective search space: 318243438
Effective search space used: 318243438
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)