RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4925
(160 letters)
>d2fug91 d.58.1.5 (9:26-179) NADH-quinone oxidoreductase chain 9,
Nqo9 {Thermus thermophilus [TaxId: 274]}
Length = 154
Score = 125 bits (315), Expect = 3e-38
Identities = 50/121 (41%), Positives = 69/121 (57%), Gaps = 6/121 (4%)
Query: 34 YPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIE------AEERADGS 87
YP L PRF G H L R+P+G E+CI C LC A CPA AI +E + G
Sbjct: 1 YPDAPVALKPRFHGRHVLTRHPNGLEKCIGCSLCAAACPAYAIYVEPAENDPENPVSAGE 60
Query: 88 RRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTESHEELLYNKEKLLSNGDKWES 147
R Y+I+M +CI+CG C+EACP AIV G +FE + + +L+Y KE +L + +
Sbjct: 61 RYAKVYEINMLRCIFCGLCEEACPTGAIVLGYDFEMADYEYSDLVYGKEDMLVDVVGTKP 120
Query: 148 E 148
+
Sbjct: 121 Q 121
>d1jb0c_ d.58.1.2 (C:) Photosystem I iron-sulfur protein PsaC
{Synechococcus elongatus [TaxId: 32046]}
Length = 80
Score = 62.8 bits (152), Expect = 2e-14
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 6/67 (8%)
Query: 49 HALRRYPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQE 108
H ++ Y + CI C C CP + + + + C+ C C+
Sbjct: 2 HTVKIY----DTCIGCTQCVRACPTDVLEMVPWDGCKAGQI--ASSPRTEDCVGCKRCET 55
Query: 109 ACPVDAI 115
ACP D +
Sbjct: 56 ACPTDFL 62
Score = 35.5 bits (81), Expect = 3e-04
Identities = 13/56 (23%), Positives = 21/56 (37%)
Query: 35 PFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERADGSRRT 90
P + + P + E C+ CK CE CP ++I A+ +R
Sbjct: 21 PTDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFLSIRVYLGAETTRSM 76
Score = 30.1 bits (67), Expect = 0.028
Identities = 9/24 (37%), Positives = 10/24 (41%)
Query: 99 KCIYCGFCQEACPVDAIVEGPNFE 122
CI C C ACP D + P
Sbjct: 9 TCIGCTQCVRACPTDVLEMVPWDG 32
>d2fdna_ d.58.1.1 (A:) Ferredoxin II {Clostridium acidurici [TaxId:
1556]}
Length = 55
Score = 61.1 bits (148), Expect = 3e-14
Identities = 25/60 (41%), Positives = 28/60 (46%), Gaps = 10/60 (16%)
Query: 58 EERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVE 117
E CI+C CE CP AI+ RY ID CI CG C CPVDA V+
Sbjct: 5 NEACISCGACEPECPVNAISSG----------DDRYVIDADTCIDCGACAGVCPVDAPVQ 54
Score = 32.2 bits (73), Expect = 0.003
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 99 KCIYCGFCQEACPVDAIVEGPN 120
CI CG C+ CPV+AI G +
Sbjct: 7 ACISCGACEPECPVNAISSGDD 28
>d1blua_ d.58.1.1 (A:) Ferredoxin II {Chromatium vinosum [TaxId:
1049]}
Length = 80
Score = 60.1 bits (145), Expect = 2e-13
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 19/87 (21%)
Query: 58 EERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYC------GFCQEACP 111
+ CI C +CE CP AI+ + Y I+ + C C C E CP
Sbjct: 5 TDECINCDVCEPECPNGAIS----------QGDETYVIEPSLCTECVGHYETSQCVEVCP 54
Query: 112 VDAIVEGPNFEFSTESHEELLYNKEKL 138
VD I++ P+ E E+ +EL E++
Sbjct: 55 VDCIIKDPSHE---ETEDELRAKYERI 78
>d1xera_ d.58.1.3 (A:) Ferredoxin {Archaeon Sulfolobus sp. [TaxId:
2288]}
Length = 103
Score = 59.0 bits (142), Expect = 7e-13
Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 58 EERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 115
+ CIA C CP + + ++ CI+C C CPV AI
Sbjct: 42 FDLCIADGSCINACPVNVFQWY-DTPGHPASEKKADPVNEQACIFCMACVNVCPVAAI 98
Score = 36.7 bits (84), Expect = 2e-04
Identities = 10/43 (23%), Positives = 15/43 (34%)
Query: 95 IDMTKCIYCGFCQEACPVDAIVEGPNFEFSTESHEELLYNKEK 137
+D CI G C ACPV+ + N++
Sbjct: 40 VDFDLCIADGSCINACPVNVFQWYDTPGHPASEKKADPVNEQA 82
>d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit,
N-domain {Desulfovibrio desulfuricans [TaxId: 876]}
Length = 85
Score = 57.4 bits (138), Expect = 2e-12
Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 8/60 (13%)
Query: 58 EERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVE 117
E +CI C C CP AI E E + CI CG C CP +AI E
Sbjct: 31 EAKCIGCDTCSQYCPTAAIFGEMGEP--------HSIPHIEACINCGQCLTHCPENAIYE 82
Score = 34.3 bits (78), Expect = 9e-04
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 95 IDMTKCIYCGFCQEACPVDAI 115
ID KCI C C + CP AI
Sbjct: 29 IDEAKCIGCDTCSQYCPTAAI 49
Score = 28.9 bits (64), Expect = 0.097
Identities = 9/22 (40%), Positives = 9/22 (40%)
Query: 58 EERCIACKLCEAICPAQAITIE 79
E CI C C CP AI
Sbjct: 62 IEACINCGQCLTHCPENAIYEA 83
>d1rgva_ d.58.1.1 (A:) Ferredoxin II {Thauera aromatica [TaxId:
59405]}
Length = 80
Score = 56.0 bits (134), Expect = 6e-12
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 19/87 (21%)
Query: 58 EERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYC------GFCQEACP 111
+ C AC C CP +AI + Y ID TKC C C+ CP
Sbjct: 5 NDDCTACDACVEECPNEAI----------TPGDPIYVIDPTKCSECVGAFDEPQCRLVCP 54
Query: 112 VDAIVEGPNFEFSTESHEELLYNKEKL 138
D I + P++ E+ EEL ++L
Sbjct: 55 ADCIPDNPDYR---ETREELQEKYDRL 78
>d1dura_ d.58.1.1 (A:) Ferredoxin II {Peptostreptococcus
asaccharolyticus [TaxId: 1258]}
Length = 55
Score = 55.4 bits (133), Expect = 7e-12
Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 11/58 (18%)
Query: 58 EERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 115
+ CIAC C+ CP I + Y ID CI CG C CPV A
Sbjct: 5 NDSCIACGACKPECPVNCIQEG-----------SIYAIDADSCIDCGSCASVCPVGAP 51
Score = 32.3 bits (73), Expect = 0.003
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 95 IDMTKCIYCGFCQEACPVDAIVEGPNFEFSTE 126
+ CI CG C+ CPV+ I EG + +
Sbjct: 3 VINDSCIACGACKPECPVNCIQEGSIYAIDAD 34
Score = 30.7 bits (69), Expect = 0.009
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 58 EERCIACKLCEAICPAQAITIE 79
+ CI C C ++CP A E
Sbjct: 33 ADSCIDCGSCASVCPVGAPNPE 54
>d1gtea5 d.58.1.5 (A:845-1017) Dihydropyrimidine dehydrogenase,
C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 173
Score = 57.8 bits (139), Expect = 8e-12
Identities = 15/59 (25%), Positives = 17/59 (28%), Gaps = 7/59 (11%)
Query: 58 EERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPV-DAI 115
EE CI C C C + T C C C CP+ D I
Sbjct: 106 EEMCINCGKCYMTCNDSGYQAIQFDP------ETHLPTVTDTCTGCTLCLSVCPIIDCI 158
Score = 32.4 bits (73), Expect = 0.011
Identities = 8/21 (38%), Positives = 8/21 (38%)
Query: 95 IDMTKCIYCGFCQEACPVDAI 115
ID CI CG C C
Sbjct: 104 IDEEMCINCGKCYMTCNDSGY 124
Score = 32.0 bits (72), Expect = 0.015
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 52 RRYPSGEERCIACKLCEAICPAQ-AITIEAEERADGSRRT 90
P+ + C C LC ++CP I + + +R
Sbjct: 133 THLPTVTDTCTGCTLCLSVCPIIDCIRMVSRTTPYEPKRG 172
>d1fxda_ d.58.1.4 (A:) Ferredoxin I {Desulfovibrio gigas [TaxId:
879]}
Length = 58
Score = 54.6 bits (131), Expect = 1e-11
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
Query: 58 EERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVE 117
+ C+AC+ C ICP E +G + C+ ++CP +AIV
Sbjct: 5 NDDCMACEACVEICPDVFEMNE-----EGDKAVVINPDSDLDCVEE--AIDSCPAEAIVR 57
Score = 26.1 bits (57), Expect = 0.60
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 52 RRYPSGEERCIACKLCEAICPAQAIT 77
+ + + CPA+AI
Sbjct: 31 AVVINPDSDLDCVEEAIDSCPAEAIV 56
>d3c8ya3 d.58.1.5 (A:127-209) Fe-only hydrogenase, second domain
{Clostridium pasteurianum [TaxId: 1501]}
Length = 83
Score = 51.4 bits (122), Expect = 4e-10
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 58 EERCIACKLCEAICPAQAIT--IEAEERADGSRRTT--RYDIDMTKCIYCGFCQEACPVD 113
+C+ C C C T ++ + + D T C+ CG C ACPV
Sbjct: 18 RTKCLLCGRCVNACGKNTETYAMKFLNKNGKTIIGAEDEKCFDDTNCLLCGQCIIACPVA 77
Query: 114 AIVE 117
A+ E
Sbjct: 78 ALSE 81
Score = 31.7 bits (71), Expect = 0.007
Identities = 10/44 (22%), Positives = 16/44 (36%)
Query: 95 IDMTKCIYCGFCQEACPVDAIVEGPNFEFSTESHEELLYNKEKL 138
+D TKC+ CG C AC + F +++
Sbjct: 16 VDRTKCLLCGRCVNACGKNTETYAMKFLNKNGKTIIGAEDEKCF 59
Score = 24.8 bits (53), Expect = 2.4
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 52 RRYPSGEERCIACKLCEAICPAQAIT 77
+ C+ C C CP A++
Sbjct: 55 DEKCFDDTNCLLCGQCIIACPVAALS 80
>d1sj1a_ d.58.1.4 (A:) Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus
[TaxId: 2261]}
Length = 66
Score = 49.4 bits (117), Expect = 1e-09
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 58 EERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 115
++ CI +C ++CP + ++ D EACPV AI
Sbjct: 8 QDTCIGDAICASLCPDVFEMNDE----GKAQPKVEVIEDEELYNCAKEAMEACPVSAI 61
Score = 31.7 bits (71), Expect = 0.007
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 92 RYDIDMTKCIYCGFCQEACPVDAIVE 117
+ +D CI C CP +
Sbjct: 3 KVSVDQDTCIGDAICASLCPDVFEMN 28
Score = 30.5 bits (68), Expect = 0.015
Identities = 10/31 (32%), Positives = 10/31 (32%)
Query: 49 HALRRYPSGEERCIACKLCEAICPAQAITIE 79
EE K CP AITIE
Sbjct: 34 QPKVEVIEDEELYNCAKEAMEACPVSAITIE 64
>d1jnrb_ d.58.1.5 (B:) Adenylylsulfate reductase B subunit {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 149
Score = 49.5 bits (117), Expect = 9e-09
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 12/76 (15%)
Query: 58 EERCIACK-----LCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPV 112
E+C CK CE ICP +T++ E+ Y+ + C C C + CP
Sbjct: 6 PEKCDGCKALERTACEYICPNDLMTLDKEKM-------KAYNREPDMCWECYSCVKMCPQ 58
Query: 113 DAIVEGPNFEFSTESH 128
AI ++S
Sbjct: 59 GAIDVRGYVDYSPLGG 74
Score = 32.5 bits (73), Expect = 0.009
Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 5/31 (16%)
Query: 95 IDMTKCIYCGF-----CQEACPVDAIVEGPN 120
++ KC C C+ CP D +
Sbjct: 4 VNPEKCDGCKALERTACEYICPNDLMTLDKE 34
>d2c42a5 d.58.1.5 (A:669-785) Pyruvate-ferredoxin oxidoreductase,
PFOR, domain V {Desulfovibrio africanus [TaxId: 873]}
Length = 117
Score = 48.3 bits (114), Expect = 1e-08
Identities = 22/95 (23%), Positives = 29/95 (30%), Gaps = 19/95 (20%)
Query: 58 EERCIACKLCEAICPAQAITIEAEER-----------------ADGSRRTTRYDIDMTKC 100
E CI C C +CP AI + + R I+ C
Sbjct: 18 PENCIQCNQCAFVCPHSAILPVLAKEEELVGAPANFTALEAKGKELKGYKFRIQINTLDC 77
Query: 101 IYCGFCQEACPV--DAIVEGPNFEFSTESHEELLY 133
+ CG C + CP A+V P L Y
Sbjct: 78 MGCGNCADICPPKEKALVMQPLDTQRDAQVPNLEY 112
Score = 32.2 bits (72), Expect = 0.010
Identities = 8/21 (38%), Positives = 8/21 (38%)
Query: 95 IDMTKCIYCGFCQEACPVDAI 115
CI C C CP AI
Sbjct: 16 WVPENCIQCNQCAFVCPHSAI 36
>d1vjwa_ d.58.1.4 (A:) Ferredoxin A {Thermotoga maritima [TaxId:
2336]}
Length = 59
Score = 45.6 bits (107), Expect = 3e-08
Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 8/58 (13%)
Query: 58 EERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 115
+ CI C +CE +CP + + T ++CP AI
Sbjct: 7 ADACIGCGVCENLCPDVFQLGD--------DGKAKVLQPETDLPCAKDAADSCPTGAI 56
Score = 30.2 bits (67), Expect = 0.016
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 92 RYDIDMTKCIYCGFCQEACPVDAIVE 117
+ +D CI CG C+ CP +
Sbjct: 2 KVRVDADACIGCGVCENLCPDVFQLG 27
Score = 29.1 bits (64), Expect = 0.045
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 59 ERCIACKLCEAICPAQAITIE 79
K CP AI++E
Sbjct: 39 TDLPCAKDAADSCPTGAISVE 59
>d1bc6a_ d.58.1.2 (A:) Ferredoxin {Bacillus schlegelii [TaxId:
1484]}
Length = 77
Score = 45.5 bits (107), Expect = 6e-08
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 12/61 (19%)
Query: 58 EERCIACK--LCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 115
E CI K C +CP I + +Y ID CI CG C+ CPV AI
Sbjct: 5 TEPCIGTKDASCVEVCPVDCIHEGED----------QYYIDPDVCIDCGACEAVCPVSAI 54
Query: 116 V 116
Sbjct: 55 Y 55
>d1iqza_ d.58.1.4 (A:) Ferredoxin {Bacillus thermoproteolyticus
[TaxId: 1427]}
Length = 81
Score = 45.5 bits (107), Expect = 6e-08
Identities = 14/59 (23%), Positives = 18/59 (30%), Gaps = 1/59 (1%)
Query: 58 EERCIACKLCEAICPAQAITIE-AEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 115
+E CIAC C A P E ++ E CP D+I
Sbjct: 8 KETCIACGACGAAAPDIYDYDEDGIAYVTLDDNQGIVEVPDILIDDMMDAFEGCPTDSI 66
Score = 28.5 bits (63), Expect = 0.11
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 95 IDMTKCIYCGFCQEACPVDAIVE 117
+D CI CG C A P +
Sbjct: 6 VDKETCIACGACGAAAPDIYDYD 28
Score = 28.5 bits (63), Expect = 0.12
Identities = 4/38 (10%), Positives = 8/38 (21%)
Query: 44 RFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAE 81
+ + CP +I + E
Sbjct: 34 YVTLDDNQGIVEVPDILIDDMMDAFEGCPTDSIKVADE 71
>d1h98a_ d.58.1.2 (A:) Ferredoxin {Thermus thermophilus [TaxId:
274]}
Length = 77
Score = 44.3 bits (104), Expect = 2e-07
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 14/81 (17%)
Query: 58 EERCIACK--LCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 115
E CI K C +CP + I ++ I +CI CG C ACPV+AI
Sbjct: 5 CEPCIGVKDQSCVEVCPVECIYDG----------GDQFYIHPEECIDCGACVPACPVNAI 54
Query: 116 VEGPNFEFSTESHEELLYNKE 136
P + + + N++
Sbjct: 55 Y--PEEDVPEQWKSYIEKNRK 73
>d1fxra_ d.58.1.4 (A:) Ferredoxin I {Sulfate-reducing bacteria
(Desulfovibrio africanus) [TaxId: 873]}
Length = 64
Score = 42.8 bits (100), Expect = 5e-07
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 6/58 (10%)
Query: 58 EERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 115
++ CIAC+ C I P E+A D++ + CPV I
Sbjct: 8 QDECIACESCVEIAPGAFAMDPEIEKAY------VKDVEGASQEEVEEAMDTCPVQCI 59
Score = 26.7 bits (58), Expect = 0.35
Identities = 6/29 (20%), Positives = 7/29 (24%)
Query: 53 RYPSGEERCIACKLCEAICPAQAITIEAE 81
+ CP Q I E E
Sbjct: 36 VKDVEGASQEEVEEAMDTCPVQCIHWEDE 64
Score = 24.7 bits (53), Expect = 1.9
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 92 RYDIDMTKCIYCGFCQEACPVDAIVEGPN 120
++ +D +CI C C E P ++
Sbjct: 3 KFYVDQDECIACESCVEIAPGAFAMDPEI 31
>d3c7bb1 d.58.1.5 (B:197-261) DsrB insert domain {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 65
Score = 41.9 bits (98), Expect = 1e-06
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 13/62 (20%)
Query: 64 CKLCE-----AICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 118
K CE A CP A+ + + +D+ KC+YCG C CP + +
Sbjct: 12 RKTCEIPSTVAACPTGALKPD--------MKNKTIKVDVEKCMYCGNCYTMCPGMPLFDP 63
Query: 119 PN 120
N
Sbjct: 64 EN 65
Score = 26.9 bits (59), Expect = 0.32
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 58 EERCIACKLCEAICPAQAI 76
E+C+ C C +CP +
Sbjct: 42 VEKCMYCGNCYTMCPGMPL 60
>d1kqfb1 d.58.1.5 (B:2-245) Formate dehydrogenase N, iron-sulfur
(beta) subunit {Escherichia coli [TaxId: 562]}
Length = 244
Score = 41.4 bits (96), Expect = 1e-05
Identities = 19/79 (24%), Positives = 26/79 (32%), Gaps = 3/79 (3%)
Query: 59 ERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 118
E CI C C A CP + E D +D C + CP AI G
Sbjct: 130 ENCIGCGYCIAGCPFNIPRLNKE---DNRVYKCTLCVDRVSVGQEPACVKTCPTGAIHFG 186
Query: 119 PNFEFSTESHEELLYNKEK 137
E + + + K +
Sbjct: 187 TKKEMLELAEQRVAKLKAR 205
Score = 32.1 bits (72), Expect = 0.018
Identities = 14/56 (25%), Positives = 17/56 (30%), Gaps = 3/56 (5%)
Query: 60 RCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 115
R C CE +A A D CI CG+C CP +
Sbjct: 95 RKDGCMHCEDPGCLKACPSA---GAIIQYANGIVDFQSENCIGCGYCIAGCPFNIP 147
Score = 31.4 bits (70), Expect = 0.035
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 95 IDMTKCIYCGFCQEAC 110
ID++ CI C CQ AC
Sbjct: 33 IDVSTCIGCKACQVAC 48
Score = 24.8 bits (53), Expect = 6.1
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 59 ERCIACKLCEAIC 71
CI CK C+ C
Sbjct: 36 STCIGCKACQVAC 48
>d7fd1a_ d.58.1.2 (A:) Ferredoxin {Azotobacter vinelandii [TaxId:
354]}
Length = 106
Score = 39.3 bits (91), Expect = 2e-05
Identities = 16/61 (26%), Positives = 20/61 (32%), Gaps = 12/61 (19%)
Query: 58 EERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 115
+ CI CK C +CP I +CI C C+ CP AI
Sbjct: 5 TDNCIKCKYTDCVEVCPVDCFYEGPN----------FLVIHPDECIDCALCEPECPAQAI 54
Query: 116 V 116
Sbjct: 55 F 55
>d2fug34 d.58.1.5 (3:96-246) NADH-quinone oxidoreductase chain 3,
Nqo3, domain 2 {Thermus thermophilus [TaxId: 274]}
Length = 151
Score = 38.9 bits (90), Expect = 5e-05
Identities = 13/61 (21%), Positives = 19/61 (31%)
Query: 59 ERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 118
ERCI CK C + G + G + CPV A+++
Sbjct: 84 ERCIHCKRCVRYFEEVPGDEVLDFIERGVHTFIGTMDFGLPSGFSGNITDICPVGALLDL 143
Query: 119 P 119
Sbjct: 144 T 144
Score = 28.2 bits (62), Expect = 0.36
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 93 YDIDMTKCIYCGFCQEAC 110
+D +CI+C C
Sbjct: 79 VILDRERCIHCKRCVRYF 96
>d1y5ib1 d.58.1.5 (B:1-509) Respiratory nitrate reductase 1 beta
chain {Escherichia coli [TaxId: 562]}
Length = 509
Score = 40.1 bits (93), Expect = 5e-05
Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 3/61 (4%)
Query: 58 EERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVE 117
+++C ++C CP + I + G + + C E C
Sbjct: 214 QDKCRGWRMCITGCPYKKIYFNWK---SGKSEKCIFCYPRIEAGQPTVCSETCVGRIRYL 270
Query: 118 G 118
G
Sbjct: 271 G 271
Score = 39.3 bits (91), Expect = 8e-05
Identities = 17/49 (34%), Positives = 18/49 (36%), Gaps = 8/49 (16%)
Query: 67 CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 115
C A CP+ AI E DG ID KC C CP I
Sbjct: 192 CVATCPSGAIYKREE---DG-----IVLIDQDKCRGWRMCITGCPYKKI 232
Score = 32.8 bits (74), Expect = 0.014
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 95 IDMTKCIYCGFCQEACPVDAI 115
+++ KCI C C C
Sbjct: 11 LNLDKCIGCHTCSVTCKNVWT 31
Score = 28.2 bits (62), Expect = 0.55
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 60 RCIACKLCEAICPAQAITIEAEERA 84
+CI C C C + E E A
Sbjct: 15 KCIGCHTCSVTCKNVWTSREGVEYA 39
>d2bs2b1 a.1.2.1 (B:107-239) Fumarate reductase {Wolinella
succinogenes [TaxId: 844]}
Length = 133
Score = 32.2 bits (72), Expect = 0.010
Identities = 17/97 (17%), Positives = 27/97 (27%), Gaps = 20/97 (20%)
Query: 35 PFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAIT----------------- 77
+ L R E A + +RCI C C A C + +
Sbjct: 21 EHDISKLEERIEPEVAQEVF--ELDRCIECGCCIAACGTKIMREDFVGAAGLNRVVRFMI 78
Query: 78 -IEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVD 113
E + D + C+ C + CP +
Sbjct: 79 DPHDERTDEDYYELIGDDDGVFGCMTLLACHDVCPKN 115
>d1vlfn2 d.58.1.5 (N:1-195) Transhydroxylase beta subunit, BthL,
N-terminal domain {Pelobacter acidigallici [TaxId:
35816]}
Length = 195
Score = 31.5 bits (70), Expect = 0.024
Identities = 13/70 (18%), Positives = 16/70 (22%), Gaps = 5/70 (7%)
Query: 46 RGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGF 105
R E R C CE + A R ID K
Sbjct: 50 RRERGTYPRNDINYRPTPCMHCENAP-----CVAKGNGAVYQREDGIVLIDPEKAKGKKE 104
Query: 106 CQEACPVDAI 115
+ CP +
Sbjct: 105 LLDTCPYGVM 114
Score = 30.0 bits (66), Expect = 0.091
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 95 IDMTKCIYCGFCQEAC 110
ID+ KC C C C
Sbjct: 8 IDVAKCQDCNNCFMGC 23
>d2v4jb1 d.58.1.5 (B:209-277) DsrB insert domain {Desulfovibrio
vulgaris [TaxId: 881]}
Length = 69
Score = 29.7 bits (67), Expect = 0.039
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 7/52 (13%)
Query: 65 KLCE-----AICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACP 111
+LCE A CP A+ E D T I +C+YCG C CP
Sbjct: 12 QLCEIPLAVASCPTAAVRPTKLEIGDKKVNTI--AIKNERCMYCGNCYTMCP 61
Score = 25.4 bits (56), Expect = 1.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 58 EERCIACKLCEAICPAQAIT 77
ERC+ C C +CPA I+
Sbjct: 47 NERCMYCGNCYTMCPALPIS 66
>d1kf6b1 a.1.2.1 (B:106-243) Fumarate reductase {Escherichia coli
[TaxId: 562]}
Length = 138
Score = 29.8 bits (66), Expect = 0.066
Identities = 17/71 (23%), Positives = 22/71 (30%), Gaps = 17/71 (23%)
Query: 60 RCIACKLCEAICPA--------------QAITIEAEERADGSRRTTR---YDIDMTKCIY 102
CI C LC A CP A + R G + + C +
Sbjct: 42 GCINCGLCYAACPQFGLNPEFIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTF 101
Query: 103 CGFCQEACPVD 113
G+C E CP
Sbjct: 102 VGYCSEVCPKH 112
Score = 28.3 bits (62), Expect = 0.28
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 87 SRRTTRYDIDMTKCIYCGFCQEACPV 112
+ + CI CG C ACP
Sbjct: 30 TPAQMAKYHQFSGCINCGLCYAACPQ 55
>d2gmha3 d.58.1.6 (A:483-584) Electron transfer
flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 102
Score = 29.1 bits (65), Expect = 0.090
Identities = 16/72 (22%), Positives = 24/72 (33%), Gaps = 13/72 (18%)
Query: 59 ERCIAC--KLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 116
R ++ + CPA E+ DG R I+ C++C C P I
Sbjct: 32 NRNLSIYDGPEQRFCPAGVYEFVPLEQGDG----FRLQINAQNCVHCKTCDIKDPSQNIN 87
Query: 117 -------EGPNF 121
GP +
Sbjct: 88 WVVPEGGGGPAY 99
>d1nekb1 a.1.2.1 (B:107-238) Succinate dehydogenase {Escherichia
coli [TaxId: 562]}
Length = 132
Score = 29.5 bits (65), Expect = 0.10
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 87 SRRTTRYDIDMTKCIYCGFCQEACPV 112
+ +CI C C +CP
Sbjct: 30 MPEQREKLDGLYECILCACCSTSCPS 55
Score = 28.0 bits (61), Expect = 0.28
Identities = 17/95 (17%), Positives = 24/95 (25%), Gaps = 18/95 (18%)
Query: 37 EKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDID 96
+ P + R G CI C C CP+ + G R+ ID
Sbjct: 19 GQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLID 78
Query: 97 ------------------MTKCIYCGFCQEACPVD 113
+ +C C CP
Sbjct: 79 SRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKG 113
>d1h0hb_ d.58.1.5 (B:) Tungsten containing formate dehydrogenase,
small subunit {Desulfovibrio gigas [TaxId: 879]}
Length = 214
Score = 29.5 bits (65), Expect = 0.12
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 95 IDMTKCIYCGFCQEAC 110
+D T+C C CQ AC
Sbjct: 6 VDTTRCTACRGCQVAC 21
Score = 29.5 bits (65), Expect = 0.14
Identities = 16/90 (17%), Positives = 22/90 (24%), Gaps = 21/90 (23%)
Query: 59 ERCIACKLCEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYC---------GFCQEA 109
+ + + CP AE M KC C C +
Sbjct: 108 KDLEDYESVISACPYDVPRKVAESNQ------------MAKCDMCIDRITNGLRPACVTS 155
Query: 110 CPVDAIVEGPNFEFSTESHEELLYNKEKLL 139
CP A+ G E + L K
Sbjct: 156 CPTGAMNFGDLSEMEAMASARLAEIKAAYS 185
Score = 24.1 bits (51), Expect = 7.8
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 59 ERCIACKLCEAIC 71
RC AC+ C+ C
Sbjct: 9 TRCTACRGCQVAC 21
>d1gtea1 a.1.2.2 (A:2-183) Dihydropyrimidine dehydrogenase,
N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 182
Score = 24.9 bits (54), Expect = 4.4
Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 12/73 (16%)
Query: 59 ERCIACK--LCEAICPA-----QAITIEAEERADGSRRTTRYDIDMTK-----CIYCGFC 106
RC+ C C+ CP IT + + G+ + D + C C
Sbjct: 76 MRCLKCADAPCQKSCPTHLDIKSFITSISNKNYYGAAKMIFSDNPLGLTCGMVCPTSDLC 135
Query: 107 QEACPVDAIVEGP 119
C + A EG
Sbjct: 136 VGGCNLYATEEGS 148
>d1iama2 b.1.1.4 (A:1-82) Intercellular adhesion molecule-1, ICAM-1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 24.0 bits (52), Expect = 4.9
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 134 NKEKLLSNGDKWESEIASNIHADH 157
K++LL G+ + SN+ D
Sbjct: 38 PKKELLLPGNNRKVYELSNVQEDS 61
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.435
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 635,450
Number of extensions: 29332
Number of successful extensions: 192
Number of sequences better than 10.0: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 81
Length of query: 160
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 82
Effective length of database: 1,336,656
Effective search space: 109605792
Effective search space used: 109605792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.1 bits)