BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4926
(176 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RJQ|A Chain A, Crystal Structure Of Adamts5 With Inhibitor Bound
Length = 378
Score = 32.7 bits (73), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 31 GSWEAWSECDTECGPGTMVRTRKAIQ-EPKNGGKHCP-TLTQKRSCLGTRCPHNPRS 85
GSW +W +C CG G R P+N G++C RSC CP N +S
Sbjct: 310 GSWGSWGQCSRSCGGGVQFAYRHCNNPAPRNNGRYCTGKRAIYRSCSLMPCPPNGKS 366
>pdb|4HQF|A Chain A, Crystal Structure Of Plasmodium Falciparum Trap, I4 Form
Length = 281
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 31 GSWEAWSECDTECGPGTMVRTRKAIQE 57
G W+ WS C CG GT R R+ + E
Sbjct: 220 GVWDEWSPCSVTCGKGTRSRKREILHE 246
>pdb|3T5O|A Chain A, Crystal Structure Of Human Complement Component C6
pdb|4A5W|B Chain B, Crystal Structure Of C5b6
pdb|4E0S|B Chain B, Crystal Structure Of C5b-6
Length = 913
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 28 CQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQK---RSCLGTRCPHN 82
C +W W+ C C GT R R+ + + C + K R C RCP N
Sbjct: 3 CDHYAWTQWTSCSKTCNSGTQSRHRQIVVDKYYQENFCEQICSKQETRECNWQRCPIN 60
>pdb|3R6B|A Chain A, Crystal Structure Of Thrombospondin-1 Tsr Domains 2 And 3
Length = 153
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 31 GSWEAWSECDTECGPGTMVRTRKAIQ-EPKNGGKHC-PTLTQKRSCLGTRCPHNPRS 85
G W W C CG G R+R P+ GGK C +T+ + C CP P +
Sbjct: 72 GPWSPWDICSVTCGGGVQKRSRLCNNPTPQFGGKDCVGDVTENQICNKQDCPLEPYT 128
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 33 WEAWSECDTECGPGTMVRTRKAIQ-EPKNGGKHCP-TLTQKRSCLGTRCPHN 82
W WS C CG G + R R P+ GK C + ++C CP N
Sbjct: 17 WSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARETKACKKDACPIN 68
>pdb|4HQL|A Chain A, Crystal Structure Of Magnesium-Loaded Plasmodium Vivax
Trap Protein
pdb|4HQL|B Chain B, Crystal Structure Of Magnesium-Loaded Plasmodium Vivax
Trap Protein
pdb|4HQN|A Chain A, Crystal Structure Of Manganese-Loaded Plasmodium Vivax
Trap Protein
pdb|4HQN|B Chain B, Crystal Structure Of Manganese-Loaded Plasmodium Vivax
Trap Protein
pdb|4HQO|A Chain A, Crystal Structure Of Plasmodium Vivax Trap Protein
pdb|4HQO|B Chain B, Crystal Structure Of Plasmodium Vivax Trap Protein
Length = 266
Score = 29.6 bits (65), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 31 GSWEAWSECDTECGPGTMVRTRKAIQE 57
G W+ W+ C CG GT R+R ++ E
Sbjct: 217 GPWDPWTACSVTCGRGTHSRSRPSLHE 243
>pdb|1VEX|A Chain A, F-Spondin Tsr Domain 4
Length = 56
Score = 29.6 bits (65), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 28 CQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGTRCP 80
C + W WS+C CG G R R ++ G L Q C+ CP
Sbjct: 5 CLLSPWSEWSDCSVTCGKGMRTRQR-MLKSLAELGDCNEDLEQAEKCMLPECP 56
>pdb|2BBX|A Chain A, Nmr Solution Structure Of The Tsr Domain Of Malaria Trap
Protein
Length = 49
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 31 GSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGTRCP 80
G W+ WS C CG GT R R+ + E C + Q++ C RCP
Sbjct: 6 GVWDEWSPCSVTCGKGTRSRKREILHE------GCTSEIQEQ-CEEERCP 48
>pdb|3B46|A Chain A, Crystal Structure Of Bna3p, A Putative Kynurenine
Aminotransferase From Saccharomyces Cerevisiae
pdb|3B46|B Chain B, Crystal Structure Of Bna3p, A Putative Kynurenine
Aminotransferase From Saccharomyces Cerevisiae
Length = 447
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 68 LTQKRSCLGTRCPHNPRSALKGRESINMRGKVCVR 102
+T K + PHNP + RE + G +CV+
Sbjct: 198 ITSKTKAVIINTPHNPIGKVFTREELTTLGNICVK 232
>pdb|1LSL|A Chain A, Crystal Structure Of The Thrombospondin-1 Type 1 Repeats
Length = 113
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 33 WEAWSECDTECGPGTMVRTRKAIQ-EPKNGGKHCPTLT-QKRSCLGTRCPHN 82
W WS C CG G + R R P+ GK C + ++C CP N
Sbjct: 8 WSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARETKACKKDACPIN 59
>pdb|1W0R|A Chain A, Solution Structure Of Dimeric Form Of Properdin By X-Ray
Solution Scattering And Analytical Ultracentrifugation
pdb|1W0R|B Chain B, Solution Structure Of Dimeric Form Of Properdin By X-Ray
Solution Scattering And Analytical Ultracentrifugation
pdb|1W0S|A Chain A, Solution Structure Of Trimeric Form Of Properdin By X-Ray
Solution Scattering And Analytical Ultracentrifugation
pdb|1W0S|B Chain B, Solution Structure Of Trimeric Form Of Properdin By X-Ray
Solution Scattering And Analytical Ultracentrifugation
pdb|1W0S|C Chain C, Solution Structure Of Trimeric Form Of Properdin By X-Ray
Solution Scattering And Analytical Ultracentrifugation
Length = 442
Score = 26.6 bits (57), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 16/46 (34%)
Query: 33 WEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGTR 78
W W C C GT R R G HCP Q+ T+
Sbjct: 115 WGPWEPCSVTCSKGTRTRRRACNHPAPKCGGHCPGQAQESEACDTQ 160
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.463
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,033,176
Number of Sequences: 62578
Number of extensions: 178122
Number of successful extensions: 307
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 287
Number of HSP's gapped (non-prelim): 30
length of query: 176
length of database: 14,973,337
effective HSP length: 92
effective length of query: 84
effective length of database: 9,216,161
effective search space: 774157524
effective search space used: 774157524
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)