Query psy4926
Match_columns 176
No_of_seqs 140 out of 1469
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 21:22:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4926.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4926hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00209 TSP1 Thrombospondin 99.2 2.2E-11 4.8E-16 76.6 5.3 51 30-80 1-53 (53)
2 PF00090 TSP_1: Thrombospondin 99.2 2.2E-11 4.7E-16 75.5 3.8 48 31-79 1-49 (49)
3 KOG3539|consensus 99.2 2.6E-11 5.6E-16 105.9 4.4 132 3-146 332-479 (508)
4 PTZ00087 thrombosponding-relat 99.0 2.6E-10 5.6E-15 93.7 4.3 51 27-81 230-286 (340)
5 KOG3538|consensus 98.6 9.4E-08 2E-12 90.8 6.1 66 17-82 469-536 (845)
6 PTZ00441 sporozoite surface pr 98.1 1.9E-06 4.2E-11 78.2 3.6 47 30-83 240-286 (576)
7 KOG1480|consensus 98.0 4.7E-06 1E-10 77.2 4.1 49 26-74 220-270 (909)
8 KOG3539|consensus 97.7 1E-05 2.2E-10 71.3 0.9 52 26-79 452-508 (508)
9 KOG4597|consensus 97.7 0.00019 4.1E-09 63.7 7.9 125 17-143 312-470 (560)
10 KOG4597|consensus 97.4 0.00041 8.9E-09 61.6 6.8 129 10-143 244-410 (560)
11 PTZ00087 thrombosponding-relat 97.0 0.0012 2.6E-08 54.9 4.9 45 119-165 230-278 (340)
12 smart00209 TSP1 Thrombospondin 96.6 0.0019 4.1E-08 39.9 2.7 24 122-146 1-24 (53)
13 PF00090 TSP_1: Thrombospondin 96.5 0.0021 4.6E-08 39.0 2.4 23 123-146 1-23 (49)
14 KOG3538|consensus 96.2 0.0038 8.2E-08 59.8 3.5 65 31-102 768-838 (845)
15 KOG1480|consensus 96.0 0.0057 1.2E-07 57.3 3.2 70 9-81 256-330 (909)
16 PTZ00441 sporozoite surface pr 91.6 0.14 3.1E-06 47.0 2.7 25 122-147 240-264 (576)
No 1
>smart00209 TSP1 Thrombospondin type 1 repeats. Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
Probab=99.22 E-value=2.2e-11 Score=76.62 Aligned_cols=51 Identities=37% Similarity=0.905 Sum_probs=44.0
Q ss_pred CCCCCCCCcCCCccCCCeEEeEEeeee-cCCCCCCCCCCC-eeeecccCCCCC
Q psy4926 30 VGSWEAWSECDTECGPGTMVRTRKAIQ-EPKNGGKHCPTL-TQKRSCLGTRCP 80 (176)
Q Consensus 30 ~s~Ws~Ws~CS~tCG~G~r~R~R~c~~-~p~~gg~~C~~~-~e~~~C~~~~Cp 80 (176)
|+.|++|+.||++||.|+++|.|.|.. .+..++..|.+. .+++.|+..+|+
T Consensus 1 ~~~ws~Ws~Cs~tCg~G~~~R~r~c~~~~~~~~~~~C~~~~~~~~~C~~~~C~ 53 (53)
T smart00209 1 WSEWSEWSPCSVTCGGGVQTRTRSCCSPPPQNGGGPCTGEDVETRACNEQPCP 53 (53)
T ss_pred CCCccCcccccCCCCCCeEEEEEecCCCCCCCCCCcCcCCCCEEeecCCCCCc
Confidence 578999999999999999999999985 444588899994 499999998885
No 2
>PF00090 TSP_1: Thrombospondin type 1 domain; InterPro: IPR000884 Thrombospondins are multimeric multidomain glycoproteins that function at cell surfaces and in the extracellular matrix milieu. They act as regulators of cell interactions in vertebrates. They are divided into two subfamilies, A and B, according to their overall molecular organisation. The subgroup A proteins TSP-1 and -2 contain an N-terminal domain, a VWFC domain, three TSP1 repeats, three EGF-like domains, TSP3 repeats and a C-terminal domain. They are assembled as trimer. The subgroup B thrombospondins, designated TSP-3, -4, and COMP (cartilage oligomeric matrix protein, also designated TSP-5) are distinct in that they contain unique N-terminal regions, lack the VWFC domain and TSP1 repeats, contain four copies of EGF-like domains, and are assembled as pentamers []. EGF, TSP3 repeats and the C-terminal domain are thus the hallmark of a thrombospondin. This repeat was first described in 1986 by Lawler and Hynes []. It was found in the thrombospondin protein where it is repeated 3 times. Now a number of proteins involved in the complement pathway (properdin, C6, C7, C8A, C8B, C9) [] as well as extracellular matrix protein like mindin, F-spondin [], SCO-spondin and even the circumsporozoite surface protein 2 and TRAP proteins of Plasmodium [, ] contain one or more instance of this repeat. It has been involved in cell-cell interaction, inhibition of angiogenesis [] and apoptosis []. The intron-exon organisation of the properdin gene confirms the hypothesis that the repeat might have evolved by a process involving exon shuffling []. A study of properdin structure provides some information about the structure of the thrombospondin type I repeat [].; PDB: 3VDJ_A 3VDL_B 3VDK_A 3R6B_A 1LSL_A 4E0S_B 3T5O_A 4A5W_B 1SZL_A 1VEX_A ....
Probab=99.18 E-value=2.2e-11 Score=75.46 Aligned_cols=48 Identities=35% Similarity=0.889 Sum_probs=41.1
Q ss_pred CCCCCCCcCCCccCCCeEEeEEeeeecCCCCCCCCCC-CeeeecccCCCC
Q psy4926 31 GSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPT-LTQKRSCLGTRC 79 (176)
Q Consensus 31 s~Ws~Ws~CS~tCG~G~r~R~R~c~~~p~~gg~~C~~-~~e~~~C~~~~C 79 (176)
++|++|++||++||.|+++|.|.|... ..++..|.+ ..+++.|+..+|
T Consensus 1 s~Ws~Ws~CS~tCg~G~~~R~r~c~~~-~~~~~~C~~~~~~~~~C~~~~C 49 (49)
T PF00090_consen 1 SEWSEWSPCSATCGGGVQTRTRTCQSP-PDGGESCPGPDQETRPCNMQPC 49 (49)
T ss_dssp TSBSS--SSSSSSSSEEEEEEECSCTT-BTTSSTCHSCSEEEEEEECSSS
T ss_pred CccCcCCCCccccccCCceeEEEECcc-cCCCCCCCCCCcCcCccCcCcC
Confidence 579999999999999999999999866 677889998 678999998876
No 3
>KOG3539|consensus
Probab=99.16 E-value=2.6e-11 Score=105.89 Aligned_cols=132 Identities=27% Similarity=0.516 Sum_probs=86.3
Q ss_pred eecCCCCCCCCcchhhhhcccc-----------CCCCCCCCCCCCCcCCCccCCCeEEeEEeee-ecCCCCCCCCCCCee
Q psy4926 3 VRKGEEGRDKEEEEEEEEEERE-----------MSDCQVGSWEAWSECDTECGPGTMVRTRKAI-QEPKNGGKHCPTLTQ 70 (176)
Q Consensus 3 ~~~~~~~~~~~~g~~~e~~~C~-----------~~~c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~-~~p~~gg~~C~~~~e 70 (176)
+||+.+-+ .+...+.+...|. +.+|.++.|++|+.|+++||.|.+.|.|.-. ..+..++..|+.++|
T Consensus 332 ~r~~~~e~-nc~edd~~~~~~~~~~~~~~~~e~p~eC~vs~ws~Ws~C~~sCGkg~r~R~R~yv~p~~a~~~~~~pe~~e 410 (508)
T KOG3539|consen 332 RRKKLYEL-NCNEDDEQAEKCMNPTHLSAEHETPLECEVSEWSQWSECSKSCGKGIRIRIRAYVNPIPASNGSCCPELVE 410 (508)
T ss_pred HHhhhhhh-ccCcchHHHhhhcCccccccccCCcccceecccccchhhhhccCCCceEEEEEEecccccccCCCCcchhh
Confidence 34444444 4444444444443 4689999999999999999999999999555 678889999999999
Q ss_pred eecccCCCCCCCCC---CCccC-CCCeeeeceeeecCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCceEEeeec
Q psy4926 71 KRSCLGTRCPHNPR---SALKG-RESINMRGKVCVRCESQAMRPNLGYRCPGHGTMDRSTRWSALSTPHCHGRWMRLQVE 146 (176)
Q Consensus 71 ~~~C~~~~Cp~~~~---~~ws~-g~g~~~R~r~C~~c~~~~~~~~~~~~C~~~~~~~~w~~Ws~Cs~~~Cgg~~~~~~~~ 146 (176)
.+.|....|.-... ..|.+ ..+-.. -.+... ....=...+..+.|+.|++|++. ||++.+.+.|+
T Consensus 411 ~~~Cva~~c~~a~~~~~~~~~e~~e~~~~---------~~a~~~-~~s~~~~~Cr~s~Ws~WseCs~s-CG~G~~~R~rt 479 (508)
T KOG3539|consen 411 EKKCVAKKCECAPSIQKLRNREAAESRRS---------ENARKP-SDSEQFPGCRVSPWSEWSECSKS-CGGGIMERYRT 479 (508)
T ss_pred hhhcccccccccchhhhhhhhhhhhccch---------hhccCC-CCcccCCCCcccccchhhhhhhh-cCCcceehhhh
Confidence 99999887754221 01111 000000 000000 00000124567899999999999 99998888776
No 4
>PTZ00087 thrombosponding-related protein; Provisional
Probab=99.02 E-value=2.6e-10 Score=93.71 Aligned_cols=51 Identities=29% Similarity=0.718 Sum_probs=43.3
Q ss_pred CCCCCCCCCCCcCCCccC--CCeEEeEEeeeecCCCCCCCCC-C-CeeeecccCC--CCCC
Q psy4926 27 DCQVGSWEAWSECDTECG--PGTMVRTRKAIQEPKNGGKHCP-T-LTQKRSCLGT--RCPH 81 (176)
Q Consensus 27 ~c~~s~Ws~Ws~CS~tCG--~G~r~R~R~c~~~p~~gg~~C~-~-~~e~~~C~~~--~Cp~ 81 (176)
+-.|++|++|+.||++|| .|+|+|+|.|.+| +| .|. | ..|++.|+.. +|+.
T Consensus 230 ~~~WSeWSeWS~CSkTCGgggGVQtRtRtCTNP---gG-dC~~G~s~ETr~CN~~cPPCp~ 286 (340)
T PTZ00087 230 NMFYTEWGEWSNCSMECDHPDNVQIRERKCAHP---SG-DCFKGDLKETRPCQVPLPPCNS 286 (340)
T ss_pred CCCCCCCCCCCCcCcccCCCCCeEeEEEeCCCC---CC-CCCCCchhhcccccCCCCCCCC
Confidence 448999999999999999 6999999999876 24 784 7 7899999986 6753
No 5
>KOG3538|consensus
Probab=98.56 E-value=9.4e-08 Score=90.84 Aligned_cols=66 Identities=35% Similarity=0.666 Sum_probs=57.8
Q ss_pred hhhhccccCCCCCCCCCCCCCcCCCccCCCeEEeEEeeee-cCCCCCCCCCC-CeeeecccCCCCCCC
Q psy4926 17 EEEEEEREMSDCQVGSWEAWSECDTECGPGTMVRTRKAIQ-EPKNGGKHCPT-LTQKRSCLGTRCPHN 82 (176)
Q Consensus 17 ~~e~~~C~~~~c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~~-~p~~gg~~C~~-~~e~~~C~~~~Cp~~ 82 (176)
......+.+.|+.|+.|++|++||.|||.|+++|.|.|.+ .|.++|+.|.+ ....+.|+..+|+..
T Consensus 469 ~~~~~~~~~~dg~w~~w~~ws~Cs~TCg~Gv~~~~r~C~np~p~~gg~~C~g~~~~~~~c~~~~C~~~ 536 (845)
T KOG3538|consen 469 TPRAPPCIPFDGGWSSWSPWSPCSRTCGGGVQTRSRLCNNPRPANGGKYCPGERLRYRSCNTEPCPPP 536 (845)
T ss_pred ccccCCCCCCCCCccccCCCCccccccCCceeeeeEECCCCCCCCCCccCCCCCceeeecCCCCCCCC
Confidence 3344555667999999999999999999999999999995 78889999999 789999999999983
No 6
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=98.12 E-value=1.9e-06 Score=78.17 Aligned_cols=47 Identities=34% Similarity=0.939 Sum_probs=38.1
Q ss_pred CCCCCCCCcCCCccCCCeEEeEEeeeecCCCCCCCCCCCeeeecccCCCCCCCC
Q psy4926 30 VGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGTRCPHNP 83 (176)
Q Consensus 30 ~s~Ws~Ws~CS~tCG~G~r~R~R~c~~~p~~gg~~C~~~~e~~~C~~~~Cp~~~ 83 (176)
.++|++||+||.|||.|+++|+|.|.. ..|.+. .++.|+...|++..
T Consensus 240 c~~Ws~Ws~Cs~tCg~G~~~R~R~~~~------~~C~~~-~~~~C~~~~Cp~~~ 286 (576)
T PTZ00441 240 CGPWDEWTPCSVTCGKGTHSRSRPILH------EGCTTH-MVEECEEEECPVEP 286 (576)
T ss_pred CCCCCCCCCCccccCCCceeeeecccC------CCCcch-hhhccccCCCCCCC
Confidence 368999999999999999999999953 237752 36889888898743
No 7
>KOG1480|consensus
Probab=98.02 E-value=4.7e-06 Score=77.19 Aligned_cols=49 Identities=39% Similarity=0.824 Sum_probs=41.1
Q ss_pred CCCCCCCCCCCCcCCCccCCCeEEeEEeeee-cCCCCCCCCCC-Ceeeecc
Q psy4926 26 SDCQVGSWEAWSECDTECGPGTMVRTRKAIQ-EPKNGGKHCPT-LTQKRSC 74 (176)
Q Consensus 26 ~~c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~~-~p~~gg~~C~~-~~e~~~C 74 (176)
+++.|++|++|+.|..-|+.|.+.|.|.|.+ .|.++|..|.+ ..+...|
T Consensus 220 v~ggwsswt~w~~c~~rc~~~~q~rtrtc~npApln~G~~c~g~s~~~~~c 270 (909)
T KOG1480|consen 220 VNGGWSEWTEWSTCNVRCGRGHQKRTRTCTNPAPLNGGAFCEGESVQKISC 270 (909)
T ss_pred EcCcccccccceeeeecccccccccCCCCCCccccCCcccccccccccccC
Confidence 6789999999999999999999999999995 77888888887 4444443
No 8
>KOG3539|consensus
Probab=97.72 E-value=1e-05 Score=71.34 Aligned_cols=52 Identities=38% Similarity=0.934 Sum_probs=38.9
Q ss_pred CCCCCCCCCCCCcCCCccCCCeEEeEEeeeecCCCCCCCCCC--C---eeeecccCCCC
Q psy4926 26 SDCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPT--L---TQKRSCLGTRC 79 (176)
Q Consensus 26 ~~c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~~~p~~gg~~C~~--~---~e~~~C~~~~C 79 (176)
..|.+++|++|+.||++||.|++.|+|..++... -+.|+. . ..+..|+.++|
T Consensus 452 ~~Cr~s~Ws~WseCs~sCG~G~~~R~rt~~n~~~--r~~c~~~t~~k~~~~~rC~~~~c 508 (508)
T KOG3539|consen 452 PGCRVSPWSEWSECSKSCGGGIMERYRTVLNHFK--RKQCPQFTSCKKKKTIRCNGHDC 508 (508)
T ss_pred CCCcccccchhhhhhhhcCCcceehhhhhhcccc--cccCcchhhhhhcccccccCCCC
Confidence 3589999999999999999999999999886433 256775 1 23333666654
No 9
>KOG4597|consensus
Probab=97.66 E-value=0.00019 Score=63.68 Aligned_cols=125 Identities=24% Similarity=0.396 Sum_probs=80.5
Q ss_pred hhhhccccCCCCCCCCCC--CCC-cCCCccCCCeEEeEEeeee--cCCCCCCCC-----CC--CeeeecccCCCCCCCCC
Q psy4926 17 EEEEEEREMSDCQVGSWE--AWS-ECDTECGPGTMVRTRKAIQ--EPKNGGKHC-----PT--LTQKRSCLGTRCPHNPR 84 (176)
Q Consensus 17 ~~e~~~C~~~~c~~s~Ws--~Ws-~CS~tCG~G~r~R~R~c~~--~p~~gg~~C-----~~--~~e~~~C~~~~Cp~~~~ 84 (176)
..+...|.+.+|. +.|. +|+ .+++-||.+++.|.++|.. ........| .+ +..+++|...||+-...
T Consensus 312 ~~e~~~cdmgpC~-g~~f~tew~~~~~aqcg~~~~~rsv~C~~s~~~~~p~E~C~~a~~sg~~pad~~pc~~GPC~~e~r 390 (560)
T KOG4597|consen 312 PAECLTCDMGPCT-GLTFVTEWSWHLDAQCGDCETTRSVVCKGSQGRFEPLEACLVACASGPRPADTRPCAQGPCPCEPR 390 (560)
T ss_pred chhhcCCCCcccC-CccchhhhhhhcccccCCceeeeeeeecCccccccchhhhhhhccCCCCCccccccccCCCCCccc
Confidence 3444458888886 2343 665 6888999999999999983 222223344 44 67899999999964322
Q ss_pred ---CCccC-----CCCeeeeceeeec---CCCCCCCCC---------CCCCCCCCCCCCCC--CCCccCCCCCCCCceEE
Q psy4926 85 ---SALKG-----RESINMRGKVCVR---CESQAMRPN---------LGYRCPGHGTMDRS--TRWSALSTPHCHGRWMR 142 (176)
Q Consensus 85 ---~~ws~-----g~g~~~R~r~C~~---c~~~~~~~~---------~~~~C~~~~~~~~w--~~Ws~Cs~~~Cgg~~~~ 142 (176)
++|++ +.|-+.|...|+- |..+..+.. -..+|....+-..| +.|+.|+.. |+|+.+-
T Consensus 391 W~~s~wsqCs~eCg~g~~~r~vica~~~a~~f~v~~p~~ca~~~r~~~~~s~~~~~c~~~w~sTewsec~~s-cgGgaqv 469 (560)
T KOG4597|consen 391 WAYSPWSQCSGECGGGGNNREVICACEQACPFEVVDPSCCACLPRPKLTQSCCRSDCTITWRSTEWSECPAS-CGGGAQV 469 (560)
T ss_pred eeecchhhhccccCCCCcceeEEEeeecCCCcccCCcccccccCCccccccccccccceeeeecccccCchh-cCCcceE
Confidence 67777 7778888888864 332222211 12333333333445 889999999 9987644
Q ss_pred e
Q psy4926 143 L 143 (176)
Q Consensus 143 ~ 143 (176)
+
T Consensus 470 r 470 (560)
T KOG4597|consen 470 R 470 (560)
T ss_pred e
Confidence 4
No 10
>KOG4597|consensus
Probab=97.42 E-value=0.00041 Score=61.61 Aligned_cols=129 Identities=19% Similarity=0.360 Sum_probs=84.9
Q ss_pred CCCCcchhhhhccccCCCCCCCCC---CCCCcCCCccCCCeEEeEEeeeec---CC-CCCCCCC--C---CeeeecccCC
Q psy4926 10 RDKEEEEEEEEEEREMSDCQVGSW---EAWSECDTECGPGTMVRTRKAIQE---PK-NGGKHCP--T---LTQKRSCLGT 77 (176)
Q Consensus 10 ~~~~~g~~~e~~~C~~~~c~~s~W---s~Ws~CS~tCG~G~r~R~R~c~~~---p~-~gg~~C~--~---~~e~~~C~~~ 77 (176)
+|+..|.-.-+..|+.+.| .+| ..|..||+.||.|+++|...|... +. .-...|+ . ..+-..|++.
T Consensus 244 ~nq~~e~p~vtstcql~ic--~ewq~~a~w~tCs~rcg~g~~~rdv~c~s~~ge~a~daads~p~~~~~~~~e~~~cdmg 321 (560)
T KOG4597|consen 244 PNQTVENPVVTSTCQLVIC--NEWQADAGWYTCSARCGAGFLRRDVPCSSVKGEGALDAADSCPADEQEKPAECLTCDMG 321 (560)
T ss_pred CccccCCcceeeeeeEEEc--chhhcCCCceeeccccccceeeccceeeeecccccccccccCCcccccCchhhcCCCCc
Confidence 6777788888888888877 466 589999999999999999988731 11 1112344 2 3455669999
Q ss_pred CCCCCCC-CCccC------CCCeeeeceeeec----------C-----CCCCCCCCCCCCCCCC--CCCCCC--CCCccC
Q psy4926 78 RCPHNPR-SALKG------RESINMRGKVCVR----------C-----ESQAMRPNLGYRCPGH--GTMDRS--TRWSAL 131 (176)
Q Consensus 78 ~Cp~~~~-~~ws~------g~g~~~R~r~C~~----------c-----~~~~~~~~~~~~C~~~--~~~~~w--~~Ws~C 131 (176)
+|...+. ..|+. |+++++|.+.|.. | .++.. . +.++|.-. ....+| +.|++|
T Consensus 322 pC~g~~f~tew~~~~~aqcg~~~~~rsv~C~~s~~~~~p~E~C~~a~~sg~~p-a-d~~pc~~GPC~~e~rW~~s~wsqC 399 (560)
T KOG4597|consen 322 PCTGLTFVTEWSWHLDAQCGDCETTRSVVCKGSQGRFEPLEACLVACASGPRP-A-DTRPCAQGPCPCEPRWAYSPWSQC 399 (560)
T ss_pred ccCCccchhhhhhhcccccCCceeeeeeeecCccccccchhhhhhhccCCCCC-c-cccccccCCCCCccceeecchhhh
Confidence 9974333 45663 8999999999974 2 11111 1 22333221 123346 899999
Q ss_pred CCCCCCCceEEe
Q psy4926 132 STPHCHGRWMRL 143 (176)
Q Consensus 132 s~~~Cgg~~~~~ 143 (176)
+.- |+++-.++
T Consensus 400 s~e-Cg~g~~~r 410 (560)
T KOG4597|consen 400 SGE-CGGGGNNR 410 (560)
T ss_pred ccc-cCCCCcce
Confidence 988 98764433
No 11
>PTZ00087 thrombosponding-related protein; Provisional
Probab=97.00 E-value=0.0012 Score=54.94 Aligned_cols=45 Identities=13% Similarity=0.203 Sum_probs=32.3
Q ss_pred CCCCCCCCCCccCCCCCCC--CceEEeeec-cccCCCCc-cccccCCCCCC
Q psy4926 119 HGTMDRSTRWSALSTPHCH--GRWMRLQVE-SALRPGLV-DNFISDVNTCP 165 (176)
Q Consensus 119 ~~~~~~w~~Ws~Cs~~~Cg--g~~~~~~~~-~~~~~~~~-~~~~~~~~~c~ 165 (176)
...|++|+.|+.|+.+ || ++-+.|.|. +|+ ++.+ .+......+|.
T Consensus 230 ~~~WSeWSeWS~CSkT-CGgggGVQtRtRtCTNP-gGdC~~G~s~ETr~CN 278 (340)
T PTZ00087 230 NMFYTEWGEWSNCSME-CDHPDNVQIRERKCAHP-SGDCFKGDLKETRPCQ 278 (340)
T ss_pred CCCCCCCCCCCCcCcc-cCCCCCeEeEEEeCCCC-CCCCCCCchhhccccc
Confidence 4579999999999999 99 466666666 675 4566 35555555663
No 12
>smart00209 TSP1 Thrombospondin type 1 repeats. Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
Probab=96.62 E-value=0.0019 Score=39.91 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=20.4
Q ss_pred CCCCCCCccCCCCCCCCceEEeeec
Q psy4926 122 MDRSTRWSALSTPHCHGRWMRLQVE 146 (176)
Q Consensus 122 ~~~w~~Ws~Cs~~~Cgg~~~~~~~~ 146 (176)
|+.|+.|+.|+.+ ||++++.+.|.
T Consensus 1 ~~~ws~Ws~Cs~t-Cg~G~~~R~r~ 24 (53)
T smart00209 1 WSEWSEWSPCSVT-CGGGVQTRTRS 24 (53)
T ss_pred CCCccCcccccCC-CCCCeEEEEEe
Confidence 5689999999999 99987777764
No 13
>PF00090 TSP_1: Thrombospondin type 1 domain; InterPro: IPR000884 Thrombospondins are multimeric multidomain glycoproteins that function at cell surfaces and in the extracellular matrix milieu. They act as regulators of cell interactions in vertebrates. They are divided into two subfamilies, A and B, according to their overall molecular organisation. The subgroup A proteins TSP-1 and -2 contain an N-terminal domain, a VWFC domain, three TSP1 repeats, three EGF-like domains, TSP3 repeats and a C-terminal domain. They are assembled as trimer. The subgroup B thrombospondins, designated TSP-3, -4, and COMP (cartilage oligomeric matrix protein, also designated TSP-5) are distinct in that they contain unique N-terminal regions, lack the VWFC domain and TSP1 repeats, contain four copies of EGF-like domains, and are assembled as pentamers []. EGF, TSP3 repeats and the C-terminal domain are thus the hallmark of a thrombospondin. This repeat was first described in 1986 by Lawler and Hynes []. It was found in the thrombospondin protein where it is repeated 3 times. Now a number of proteins involved in the complement pathway (properdin, C6, C7, C8A, C8B, C9) [] as well as extracellular matrix protein like mindin, F-spondin [], SCO-spondin and even the circumsporozoite surface protein 2 and TRAP proteins of Plasmodium [, ] contain one or more instance of this repeat. It has been involved in cell-cell interaction, inhibition of angiogenesis [] and apoptosis []. The intron-exon organisation of the properdin gene confirms the hypothesis that the repeat might have evolved by a process involving exon shuffling []. A study of properdin structure provides some information about the structure of the thrombospondin type I repeat [].; PDB: 3VDJ_A 3VDL_B 3VDK_A 3R6B_A 1LSL_A 4E0S_B 3T5O_A 4A5W_B 1SZL_A 1VEX_A ....
Probab=96.52 E-value=0.0021 Score=39.02 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=18.1
Q ss_pred CCCCCCccCCCCCCCCceEEeeec
Q psy4926 123 DRSTRWSALSTPHCHGRWMRLQVE 146 (176)
Q Consensus 123 ~~w~~Ws~Cs~~~Cgg~~~~~~~~ 146 (176)
++|+.|+.|+.+ ||++.+.+.+.
T Consensus 1 s~Ws~Ws~CS~t-Cg~G~~~R~r~ 23 (49)
T PF00090_consen 1 SEWSEWSPCSAT-CGGGVQTRTRT 23 (49)
T ss_dssp TSBSS--SSSSS-SSSEEEEEEEC
T ss_pred CccCcCCCCccc-cccCCceeEEE
Confidence 479999999999 99988777766
No 14
>KOG3538|consensus
Probab=96.24 E-value=0.0038 Score=59.81 Aligned_cols=65 Identities=22% Similarity=0.428 Sum_probs=51.0
Q ss_pred CCCCCCCcCCCccCCCeEEeEEeeeecCCCCCCCCCCCeeeecccCCCCC-CCCCCCccC-----CCCeeeeceeeec
Q psy4926 31 GSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGTRCP-HNPRSALKG-----RESINMRGKVCVR 102 (176)
Q Consensus 31 s~Ws~Ws~CS~tCG~G~r~R~R~c~~~p~~gg~~C~~~~e~~~C~~~~Cp-~~~~~~ws~-----g~g~~~R~r~C~~ 102 (176)
..++.|+.||++||.|++.|...|..... . ..+.+.|+..+|+ .+....|++ +.|++.|.+.|..
T Consensus 768 w~~~~w~~Cs~~cg~g~~~~~~~C~~~~~-~------~~~~~~C~~~~c~~~w~~~~w~~Cs~~cg~g~~~r~v~C~~ 838 (845)
T KOG3538|consen 768 WAHGPWSECSASCGGGVQSRKVSCRRTFD-E------VPRWRKCNLQPCPPRWVAGEWSECSRTCGSGLRARSVACRD 838 (845)
T ss_pred eecCCccccccccCCCceecccceeeccc-c------CccccccCCCCCCCcceecCCchhhhhhcCccccccccccc
Confidence 45689999999999999999999985322 1 3577889998893 333367888 8899999999875
No 15
>KOG1480|consensus
Probab=95.99 E-value=0.0057 Score=57.32 Aligned_cols=70 Identities=31% Similarity=0.542 Sum_probs=55.9
Q ss_pred CCCCCcchhhhhcccc---CCCCCCCCCCCCCcCCCccCCCeEEeEEeee-ecCCCCCCCCCC-CeeeecccCCCCCC
Q psy4926 9 GRDKEEEEEEEEEERE---MSDCQVGSWEAWSECDTECGPGTMVRTRKAI-QEPKNGGKHCPT-LTQKRSCLGTRCPH 81 (176)
Q Consensus 9 ~~~~~~g~~~e~~~C~---~~~c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~-~~p~~gg~~C~~-~~e~~~C~~~~Cp~ 81 (176)
+.-.+.|....+.+|. ++|+.|+.|+.|+.|+..|- ..|+|.|. .+|.++|+.|.+ ..+...|....|-.
T Consensus 256 ~G~~c~g~s~~~~~c~~~c~~dg~w~~ws~ws~c~~~c~---~~r~r~ct~p~p~ngg~~c~g~~~~s~~c~~glc~~ 330 (909)
T KOG1480|consen 256 GGAFCEGESVQKISCTVLCPVDGGWSSWSDWSACSSECH---HYRTRECTAPPPMNGGKPCFGLDLMSQNCTDGLCTA 330 (909)
T ss_pred CcccccccccccccCcccccccCceeehhhhhhccCccc---cceeeeeccCCcccCCccccCccccCCCCccccccc
Confidence 4556677777788886 58889999999999998884 67999999 688999999999 56777777665543
No 16
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=91.56 E-value=0.14 Score=47.02 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=20.8
Q ss_pred CCCCCCCccCCCCCCCCceEEeeecc
Q psy4926 122 MDRSTRWSALSTPHCHGRWMRLQVES 147 (176)
Q Consensus 122 ~~~w~~Ws~Cs~~~Cgg~~~~~~~~~ 147 (176)
++.|+.|+.||.+ ||.+.+.++|.-
T Consensus 240 c~~Ws~Ws~Cs~t-Cg~G~~~R~R~~ 264 (576)
T PTZ00441 240 CGPWDEWTPCSVT-CGKGTHSRSRPI 264 (576)
T ss_pred CCCCCCCCCCccc-cCCCceeeeecc
Confidence 3689999999999 998887777663
Done!