Query psy4926
Match_columns 176
No_of_seqs 140 out of 1469
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 21:23:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4926.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4926hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w0r_A Properdin, factor P; X- 99.8 1.3E-18 4.3E-23 152.4 11.9 137 9-146 207-379 (442)
2 1w0r_A Properdin, factor P; X- 99.8 2.1E-18 7.2E-23 151.0 11.0 129 17-146 94-256 (442)
3 1lsl_A Thrombospondin 1; TSP-1 99.7 2.4E-17 8.3E-22 119.1 10.9 83 26-146 1-85 (113)
4 3r6b_A Thrombospondin-1; cell 99.7 1.6E-16 5.4E-21 120.8 10.0 84 25-146 9-94 (153)
5 1vex_A F-spondin; TSR, cell ad 99.5 2.2E-14 7.5E-19 91.1 6.0 54 25-80 2-56 (56)
6 1szl_A F-spondin; TSR, cell ad 99.5 7.1E-15 2.4E-19 95.2 3.3 58 25-83 2-60 (61)
7 1lsl_A Thrombospondin 1; TSP-1 99.4 1.2E-13 4.1E-18 99.5 5.5 71 9-79 37-113 (113)
8 3r6b_A Thrombospondin-1; cell 99.4 6.3E-13 2.2E-17 100.8 6.1 76 8-83 45-126 (153)
9 3t5o_A Complement component C6 99.3 4.7E-13 1.6E-17 126.1 1.3 54 27-80 2-58 (913)
10 2bbx_A Trap, thrombospondin-re 99.3 4.7E-12 1.6E-16 78.5 5.1 47 28-81 3-49 (49)
11 3ghm_A A disintegrin and metal 99.1 4.2E-11 1.4E-15 103.8 5.0 61 22-82 95-157 (410)
12 2rjq_A Adamts-5; metalloprotea 99.0 6.5E-11 2.2E-15 101.3 0.0 58 25-82 304-363 (378)
13 4hqf_A Thrombospondin-related 98.7 2.9E-09 1E-13 86.9 0.2 59 19-84 206-266 (281)
14 3t5o_A Complement component C6 98.6 8.3E-09 2.8E-13 97.3 1.5 65 17-83 46-116 (913)
15 3vdj_A Circumsporozoite (CS) p 98.4 3.2E-08 1.1E-12 66.2 0.5 50 32-82 22-72 (77)
16 3ojy_B Complement component C8 98.3 4.1E-07 1.4E-11 81.3 5.2 57 22-81 6-64 (537)
17 3ojy_A Complement component C8 98.2 1.5E-06 5E-11 78.0 5.8 55 25-81 6-62 (554)
18 3ojy_B Complement component C8 98.2 6.9E-07 2.4E-11 79.8 2.7 47 25-75 489-537 (537)
19 3ojy_A Complement component C8 98.1 1.5E-06 5.1E-11 78.0 3.4 48 22-74 505-554 (554)
20 1vex_A F-spondin; TSR, cell ad 97.5 8.9E-05 3E-09 46.1 3.9 29 117-146 2-30 (56)
21 4hqo_A Sporozoite surface prot 97.4 6.3E-05 2.1E-09 60.7 2.8 55 20-81 204-260 (266)
22 2bbx_A Trap, thrombospondin-re 97.1 0.00043 1.5E-08 42.1 3.7 28 119-147 2-29 (49)
23 1szl_A F-spondin; TSR, cell ad 96.5 0.00078 2.7E-08 42.6 1.3 27 119-146 4-31 (61)
24 3ghm_A A disintegrin and metal 95.4 0.014 4.7E-07 50.4 4.4 34 116-150 97-131 (410)
25 3vdj_A Circumsporozoite (CS) p 95.0 0.011 3.6E-07 39.4 2.0 25 123-148 21-45 (77)
26 2rjq_A Adamts-5; metalloprotea 94.1 0.0092 3.1E-07 50.5 0.0 32 114-146 301-332 (378)
27 4hqf_A Thrombospondin-related 92.4 0.024 8.1E-07 45.6 0.0 27 119-146 216-242 (281)
28 4hqo_A Sporozoite surface prot 86.3 0.31 1.1E-05 38.7 2.1 27 119-146 213-239 (266)
No 1
>1w0r_A Properdin, factor P; X-RAY scattering, analytical ultracentrifugation, complement, thrombospondin type I repeats, constrained modelling; NMR {Homo sapiens} PDB: 1w0s_A
Probab=99.77 E-value=1.3e-18 Score=152.45 Aligned_cols=137 Identities=21% Similarity=0.385 Sum_probs=110.3
Q ss_pred CCCCCcchhhhhccccCC-----CCCCCCCCCCCcCCCccCCCeEEeEEeeee-cCCCCCCCCCC-CeeeecccC-CCCC
Q psy4926 9 GRDKEEEEEEEEEEREMS-----DCQVGSWEAWSECDTECGPGTMVRTRKAIQ-EPKNGGKHCPT-LTQKRSCLG-TRCP 80 (176)
Q Consensus 9 ~~~~~~g~~~e~~~C~~~-----~c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~~-~p~~gg~~C~~-~~e~~~C~~-~~Cp 80 (176)
+...+.+...+++.|+.. ++.|+.|++|+.||++||.|+++|.|.|.+ .|.++|..|.+ ..+++.|+. .+||
T Consensus 207 ~g~~C~g~~~e~~~C~~~~~Cp~~g~W~~Ws~WS~CS~tCG~G~q~R~r~C~~~~p~~gg~~C~g~~~~~~~C~~~~~Cp 286 (442)
T 1w0r_A 207 PGKPCPGLAYEQRRCTGLPPCPVAGGWGPWGPVSPCPVTCGLGQTMEQRTCNHPVPQHGGPFCAGDATRTHICNTAVPCP 286 (442)
T ss_pred CCcCCCCCcceeEeecccCCcccccccccccccCCcCCccCCCceeeEEEeCCCCCCCCCCCCCCCCcceeeCCCCCCCC
Confidence 556778888999999854 457899999999999999999999999995 66789999999 789999998 6999
Q ss_pred CCCC----CCccC-----------C--CCeeeeceeeec-------CCCCCCCCC-C--CCCCCCCCCCCCCCCCccCCC
Q psy4926 81 HNPR----SALKG-----------R--ESINMRGKVCVR-------CESQAMRPN-L--GYRCPGHGTMDRSTRWSALST 133 (176)
Q Consensus 81 ~~~~----~~ws~-----------g--~g~~~R~r~C~~-------c~~~~~~~~-~--~~~C~~~~~~~~w~~Ws~Cs~ 133 (176)
++.. ++|+. + .|++.|.|.|.. |.+...+.+ | ..+|+.++.|++|+.|+.|+.
T Consensus 287 ~~g~W~~Ws~Ws~Cs~~~~~~~tCg~~~G~q~R~r~C~~~~~~g~~C~g~~~~~~~C~~~~~Cp~~~~W~~Ws~Ws~Cs~ 366 (442)
T 1w0r_A 287 VDGEWDSWGEWSPCIRRNMKSISCQEIPGQQSRGRTCRGRKFDGHRCAGQQQDIRHCYSIQHCPLKGSWSEWSTWGLCMP 366 (442)
T ss_pred CCCEecCCCCcCCCCCCccccCccCCCCCEEEEEEEecCCcCCCcccCCCChhhccccCCCCCCCCCeecCcCCccccCC
Confidence 7532 45554 2 689999999974 555433321 3 467998999999999999999
Q ss_pred CCCC-CceEEeeec
Q psy4926 134 PHCH-GRWMRLQVE 146 (176)
Q Consensus 134 ~~Cg-g~~~~~~~~ 146 (176)
+ || ++.+.+.|.
T Consensus 367 t-CG~~G~~~R~r~ 379 (442)
T 1w0r_A 367 P-CGPNPTRARQRL 379 (442)
T ss_pred C-cCCCCeEEEEEE
Confidence 9 99 777666666
No 2
>1w0r_A Properdin, factor P; X-RAY scattering, analytical ultracentrifugation, complement, thrombospondin type I repeats, constrained modelling; NMR {Homo sapiens} PDB: 1w0s_A
Probab=99.76 E-value=2.1e-18 Score=151.02 Aligned_cols=129 Identities=22% Similarity=0.392 Sum_probs=102.9
Q ss_pred hhhhccccCCC-----CCCCCCCCCCcCCCccCCCeEEeEEeeeecCCCCCCCCCC-Ceeeeccc-CCCCCCCCC----C
Q psy4926 17 EEEEEEREMSD-----CQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPT-LTQKRSCL-GTRCPHNPR----S 85 (176)
Q Consensus 17 ~~e~~~C~~~~-----c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~~~p~~gg~~C~~-~~e~~~C~-~~~Cp~~~~----~ 85 (176)
..++++|+... +.|+.|++|+.||++||.|+++|+|.|.++...++..|.+ +.+++.|+ ..+|+.+.. +
T Consensus 94 ~~~~~~C~~~~Ccp~~~~W~~W~~Ws~CS~tCG~G~q~R~r~C~~~~~~~~~~C~g~~~~~~~C~~~~~Cp~~~~W~~Ws 173 (442)
T 1w0r_A 94 EWQLQACEDQQCCPEMGGWSGWGPWEPCSVTCSKGTRTRRRACNHPAPKCGGHCPGQAQESEACDTQQVCPTHGAWATWG 173 (442)
T ss_pred ccccccccCCccCCCCCceeeCCCCCCCCCCCCCCceEEEEEeCCcCCCCCCCCCCCcceecCCCCcCccccccccceec
Confidence 56888888654 4699999999999999999999999999755557889998 88999999 789997421 4
Q ss_pred CccC-----CCCe----eeeceeeec-----------CCCCCCCCC-C-CCC-CCCCCCCCCCCCCccCCCCCCCCceEE
Q psy4926 86 ALKG-----RESI----NMRGKVCVR-----------CESQAMRPN-L-GYR-CPGHGTMDRSTRWSALSTPHCHGRWMR 142 (176)
Q Consensus 86 ~ws~-----g~g~----~~R~r~C~~-----------c~~~~~~~~-~-~~~-C~~~~~~~~w~~Ws~Cs~~~Cgg~~~~ 142 (176)
+|++ |.|+ ++|.|.|.. |.+...+.+ | ..+ |++++.|..|+.|+.|+.+ ||++.+.
T Consensus 174 ~WS~CS~tCG~G~~~~~q~R~r~C~~~~~~~~~~g~~C~g~~~e~~~C~~~~~Cp~~g~W~~Ws~WS~CS~t-CG~G~q~ 252 (442)
T 1w0r_A 174 PWTPCSASCHGGPHEPKETRSRKCSAPEPSQKPPGKPCPGLAYEQRRCTGLPPCPVAGGWGPWGPVSPCPVT-CGLGQTM 252 (442)
T ss_pred ccccCCccCCCCCccCceEEEEEecCCCcCccCCCcCCCCCcceeEeecccCCcccccccccccccCCcCCc-cCCCcee
Confidence 5666 7888 999999975 333222211 3 334 9999999999999999999 9998877
Q ss_pred eeec
Q psy4926 143 LQVE 146 (176)
Q Consensus 143 ~~~~ 146 (176)
+.|.
T Consensus 253 R~r~ 256 (442)
T 1w0r_A 253 EQRT 256 (442)
T ss_pred eEEE
Confidence 7766
No 3
>1lsl_A Thrombospondin 1; TSP-1, TSR, cell adhesion; HET: FUL FUC; 1.90A {Homo sapiens} SCOP: g.60.1.1 g.60.1.1
Probab=99.73 E-value=2.4e-17 Score=119.06 Aligned_cols=83 Identities=27% Similarity=0.608 Sum_probs=72.2
Q ss_pred CCCCCCCCCCCCcCCCccCCCeEEeEEeeee-cCCCCCCCCCC-CeeeecccCCCCCCCCCCCccCCCCeeeeceeeecC
Q psy4926 26 SDCQVGSWEAWSECDTECGPGTMVRTRKAIQ-EPKNGGKHCPT-LTQKRSCLGTRCPHNPRSALKGRESINMRGKVCVRC 103 (176)
Q Consensus 26 ~~c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~~-~p~~gg~~C~~-~~e~~~C~~~~Cp~~~~~~ws~g~g~~~R~r~C~~c 103 (176)
+|+.|++|++|+.||++||.|+++|+|.|.+ .|..++..|.+ ..+++.|+..+
T Consensus 1 ~~g~ws~Ws~Ws~CS~tCG~G~~~R~R~C~~~~p~~~g~~C~g~~~e~~~C~~~~------------------------- 55 (113)
T 1lsl_A 1 QDGGWSHWSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARETKACKKDA------------------------- 55 (113)
T ss_dssp CCCCCCCCCCCCCCSCSSSEEEEEEECCSCTTCCCTTSCCCCSCSEEEEEEECCC-------------------------
T ss_pred CcCccCCCCCCCCCcCcCCCceEEEEEEeCCCCCCCCCCcCCCCCceeeEccccc-------------------------
Confidence 4789999999999999999999999999985 56788999998 77888887643
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCceEEeeec
Q psy4926 104 ESQAMRPNLGYRCPGHGTMDRSTRWSALSTPHCHGRWMRLQVE 146 (176)
Q Consensus 104 ~~~~~~~~~~~~C~~~~~~~~w~~Ws~Cs~~~Cgg~~~~~~~~ 146 (176)
|+.++.|+.|+.|+.|+.+ ||++.+.+.|.
T Consensus 56 ------------Cp~~g~w~~Ws~Ws~Cs~t-CG~G~~~R~r~ 85 (113)
T 1lsl_A 56 ------------CPINGGWGPWSPWDICSVT-CGGGVQKRSRL 85 (113)
T ss_dssp ------------CCBCCCCCCCCCCCCCSCS-SSCEEEEEECC
T ss_pred ------------ccccccccCcCCccCccCc-CCCCeEEEEEE
Confidence 5666789999999999999 99988888777
No 4
>3r6b_A Thrombospondin-1; cell adhesion, disulfide bond, EGF-like domain, TSP-1 type 1; 2.40A {Homo sapiens}
Probab=99.68 E-value=1.6e-16 Score=120.83 Aligned_cols=84 Identities=26% Similarity=0.612 Sum_probs=73.0
Q ss_pred CCCCCCCCCCCCCcCCCccCCCeEEeEEeeee-cCCCCCCCCCC-CeeeecccCCCCCCCCCCCccCCCCeeeeceeeec
Q psy4926 25 MSDCQVGSWEAWSECDTECGPGTMVRTRKAIQ-EPKNGGKHCPT-LTQKRSCLGTRCPHNPRSALKGRESINMRGKVCVR 102 (176)
Q Consensus 25 ~~~c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~~-~p~~gg~~C~~-~~e~~~C~~~~Cp~~~~~~ws~g~g~~~R~r~C~~ 102 (176)
++|+.|++|++|+.||++||.|+++|.|.|.. .|..++..|.+ ..+++.|+..+
T Consensus 9 pvdg~Ws~Ws~Ws~CS~tCG~G~~~R~r~C~~~~p~~~g~~C~g~~~~~~~C~~~~------------------------ 64 (153)
T 3r6b_A 9 LQDGGWSHWSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARETKACKKDA------------------------ 64 (153)
T ss_dssp CCCCCCCCCCCCCCCSCSSSEECCEEECCSCTTCCCTTCCCCCSCSEEECCEECSC------------------------
T ss_pred ccCCccCCCCCCCCCCCCCCCccEEEEEEeCCCCCCCccccCCCcceeeecccccc------------------------
Confidence 68999999999999999999999999999985 56788999998 77888887644
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCceEEeeec
Q psy4926 103 CESQAMRPNLGYRCPGHGTMDRSTRWSALSTPHCHGRWMRLQVE 146 (176)
Q Consensus 103 c~~~~~~~~~~~~C~~~~~~~~w~~Ws~Cs~~~Cgg~~~~~~~~ 146 (176)
|+.++.|+.|+.|+.|+.+ ||++.+.+.|.
T Consensus 65 -------------Cp~~~~w~~Ws~Ws~Cs~t-CG~G~~~R~r~ 94 (153)
T 3r6b_A 65 -------------CPINGGWGPWSPWDICSVT-CGGGVQKRSRL 94 (153)
T ss_dssp -------------CCBCCCCCCCCCCCCCSCS-SSSEEEEEECC
T ss_pred -------------ccccCccccccccCCCCCc-CCCceEEEEEE
Confidence 5556678999999999999 99988887776
No 5
>1vex_A F-spondin; TSR, cell adhesion; NMR {Rattus norvegicus}
Probab=99.51 E-value=2.2e-14 Score=91.14 Aligned_cols=54 Identities=30% Similarity=0.747 Sum_probs=48.8
Q ss_pred CCCCCCCCCCCCCcCCCccCCCeEEeEEeeeecCCCCCCCCCC-CeeeecccCCCCC
Q psy4926 25 MSDCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPT-LTQKRSCLGTRCP 80 (176)
Q Consensus 25 ~~~c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~~~p~~gg~~C~~-~~e~~~C~~~~Cp 80 (176)
+++|.|++|++|+.||++||.|+++|+|.|.+++. +..|.+ ..+++.|+..+||
T Consensus 2 pv~~~ws~Ws~Ws~CS~tCG~G~~~R~R~C~~~~~--~~~C~g~~~e~~~C~~~~CP 56 (56)
T 1vex_A 2 SIPCLLSPWSEWSDCSVTCGKGMRTRQRMLKSLAE--LGDCNEDLEQAEKCMLPECP 56 (56)
T ss_dssp CCCCCBCCCCCCCCCSCSSBSCEEEEECCBCCTTC--CCCCCCCSEEEEECCBCSCC
T ss_pred CcCCcccCCCCCCCcCccCCCCCEEEEEeccCCCC--CCCCCCCCCeEeecCCCCCc
Confidence 57999999999999999999999999999986543 678999 8899999999886
No 6
>1szl_A F-spondin; TSR, cell adhesion; NMR {Rattus norvegicus}
Probab=99.50 E-value=7.1e-15 Score=95.25 Aligned_cols=58 Identities=24% Similarity=0.675 Sum_probs=52.1
Q ss_pred CCCCCCCCCCCCCcCC-CccCCCeEEeEEeeeecCCCCCCCCCCCeeeecccCCCCCCCC
Q psy4926 25 MSDCQVGSWEAWSECD-TECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGTRCPHNP 83 (176)
Q Consensus 25 ~~~c~~s~Ws~Ws~CS-~tCG~G~r~R~R~c~~~p~~gg~~C~~~~e~~~C~~~~Cp~~~ 83 (176)
.++|.|++|++|+.|| ++||.|+++|+|.|. .|.+++..|+++.+++.|+..+||++.
T Consensus 2 ~~~C~ws~Ws~Ws~CS~~tCG~G~~~R~R~c~-~p~~gg~~C~g~~e~~~C~~~~Cp~~~ 60 (61)
T 1szl_A 2 SETCIYSNWSPWSACSSSTCEKGKRMRQRMLK-AQLDLSVPCPDTQDFQPCMGPGCSDED 60 (61)
T ss_dssp CSSEEECSCCCCCCCSCSSSSCEECCEECCEE-EESCTTSCCCTTEECCEECCTTCCSTT
T ss_pred CccCCcCCCCCCCCCCCccCCCCeeEEEeecc-ccCCCCCCCCCccceeEeCcCCCcCCC
Confidence 3689999999999999 699999999999999 677899999994499999999998764
No 7
>1lsl_A Thrombospondin 1; TSP-1, TSR, cell adhesion; HET: FUL FUC; 1.90A {Homo sapiens} SCOP: g.60.1.1 g.60.1.1
Probab=99.43 E-value=1.2e-13 Score=99.49 Aligned_cols=71 Identities=28% Similarity=0.609 Sum_probs=62.8
Q ss_pred CCCCCcchhhhhccccCCC----CCCCCCCCCCcCCCccCCCeEEeEEeeee-cCCCCCCCCCC-CeeeecccCCCC
Q psy4926 9 GRDKEEEEEEEEEEREMSD----CQVGSWEAWSECDTECGPGTMVRTRKAIQ-EPKNGGKHCPT-LTQKRSCLGTRC 79 (176)
Q Consensus 9 ~~~~~~g~~~e~~~C~~~~----c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~~-~p~~gg~~C~~-~~e~~~C~~~~C 79 (176)
+...+.+...++++|+... +.|+.|++|+.||++||.|+++|.|.|.+ .|.++|..|.+ ..+++.|+.++|
T Consensus 37 ~g~~C~g~~~e~~~C~~~~Cp~~g~w~~Ws~Ws~Cs~tCG~G~~~R~r~C~~~~p~~gg~~C~g~~~e~~~C~~~~C 113 (113)
T 1lsl_A 37 NGKPCEGEARETKACKKDACPINGGWGPWSPWDICSVTCGGGVQKRSRLCNNPTPQFGGKDCVGDVTENQICNKQDC 113 (113)
T ss_dssp TSCCCCSCSEEEEEEECCCCCBCCCCCCCCCCCCCSCSSSCEEEEEECCSCTTCCBTTCCCCCSCSEEEEEECCSCC
T ss_pred CCCcCCCCCceeeEcccccccccccccCcCCccCccCcCCCCeEEEEEEeCCCCcccCCCCCCCCCceEeccCCCCC
Confidence 4567788899999999654 46999999999999999999999999995 57789999999 899999999876
No 8
>3r6b_A Thrombospondin-1; cell adhesion, disulfide bond, EGF-like domain, TSP-1 type 1; 2.40A {Homo sapiens}
Probab=99.37 E-value=6.3e-13 Score=100.84 Aligned_cols=76 Identities=29% Similarity=0.622 Sum_probs=64.8
Q ss_pred CCCCCCcchhhhhccccCCC----CCCCCCCCCCcCCCccCCCeEEeEEeeee-cCCCCCCCCCC-CeeeecccCCCCCC
Q psy4926 8 EGRDKEEEEEEEEEEREMSD----CQVGSWEAWSECDTECGPGTMVRTRKAIQ-EPKNGGKHCPT-LTQKRSCLGTRCPH 81 (176)
Q Consensus 8 ~~~~~~~g~~~e~~~C~~~~----c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~~-~p~~gg~~C~~-~~e~~~C~~~~Cp~ 81 (176)
.+...+.+...++++|+... +.|+.|++|+.|+++||.|+++|.|.|.+ .|.++|..|.+ ..+++.|+..+|++
T Consensus 45 ~~g~~C~g~~~~~~~C~~~~Cp~~~~w~~Ws~Ws~Cs~tCG~G~~~R~r~C~~p~p~~gg~~C~g~~~e~~~C~~~~Cp~ 124 (153)
T 3r6b_A 45 MNGKPCEGEARETKACKKDACPINGGWGPWSPWDICSVTCGGGVQKRSRLCNNPTPQFGGKDCVGDVTENQICNKQDCPL 124 (153)
T ss_dssp TTCCCCCSCSEEECCEECSCCCBCCCCCCCCCCCCCSCSSSSEEEEEECCSCTTCCBTTCCCCCSCSEEEEEECCSCCC-
T ss_pred CccccCCCcceeeeccccccccccCccccccccCCCCCcCCCceEEEEEEeCCCCccCCCCCCCCCCccEeeeCCCCCcC
Confidence 35567788899999999654 47999999999999999999999999985 57789999999 89999999999997
Q ss_pred CC
Q psy4926 82 NP 83 (176)
Q Consensus 82 ~~ 83 (176)
+.
T Consensus 125 ~~ 126 (153)
T 3r6b_A 125 EP 126 (153)
T ss_dssp --
T ss_pred CC
Confidence 65
No 9
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*
Probab=99.28 E-value=4.7e-13 Score=126.11 Aligned_cols=54 Identities=28% Similarity=0.722 Sum_probs=45.8
Q ss_pred CCCCCCCCCCCcCCCccCCCeEEeEEeeeecCCCCCCCCCC---CeeeecccCCCCC
Q psy4926 27 DCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPT---LTQKRSCLGTRCP 80 (176)
Q Consensus 27 ~c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~~~p~~gg~~C~~---~~e~~~C~~~~Cp 80 (176)
.|.|++|++|++||++||.|+++|.|.|...+..++..|++ ..+++.|+.++||
T Consensus 2 ~C~~~~Ws~Ws~CS~tCG~G~q~R~R~c~~~~~~~~~~C~~~c~~~e~~~C~~~~Cp 58 (913)
T 3t5o_A 2 FCDHYAWTQWTSCSKTCNSGTQSRHRQIVVDKYYQENFCEQICSKQETRECNWQRCP 58 (913)
T ss_dssp CGGGSCBCCCCCCSCSSSCEEEEEEBCCCCCHHHHHTTHHHHCCCEEEEEECCSCCC
T ss_pred CCcCCCCCCCccccCCCCCeeEEEEEEEccCCCCCCcCCCCcCcCceeeeecccccc
Confidence 58899999999999999999999999999877778888876 4677777765443
No 10
>2bbx_A Trap, thrombospondin-related anonymous protein; elongated three-stranded structure, cell adhesion; NMR {Plasmodium falciparum}
Probab=99.27 E-value=4.7e-12 Score=78.45 Aligned_cols=47 Identities=36% Similarity=0.936 Sum_probs=41.8
Q ss_pred CCCCCCCCCCcCCCccCCCeEEeEEeeeecCCCCCCCCCCCeeeecccCCCCCC
Q psy4926 28 CQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGTRCPH 81 (176)
Q Consensus 28 c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~~~p~~gg~~C~~~~e~~~C~~~~Cp~ 81 (176)
..|++|++|+.||++||.|+++|+|.|.++ .|.+. +++.|+..+||+
T Consensus 3 ~~w~~Ws~Ws~CS~tCG~G~~~R~r~C~~~------~C~g~-~~~~C~~~~Cpv 49 (49)
T 2bbx_A 3 ASCGVWDEWSPCSVTCGKGTRSRKREILHE------GCTSE-IQEQCEEERCPP 49 (49)
T ss_dssp CCCSCCCCCCCCSSSSSSSEEEEECCCSST------TSCCE-EEEECCCCCCCC
T ss_pred CcCCCCCCcccccCcCCCCeEEEEeeeCCC------CCCCC-eeEeeCCCCCCC
Confidence 468999999999999999999999999863 58876 899999999984
No 11
>3ghm_A A disintegrin and metalloproteinase with thrombos motifs 13; thrombospondin type-1 motif, beta sandwich, hydrolase; HET: NAG FUC BGC; 2.60A {Homo sapiens} PDB: 3ghn_A* 3vn4_A*
Probab=99.11 E-value=4.2e-11 Score=103.84 Aligned_cols=61 Identities=26% Similarity=0.536 Sum_probs=55.3
Q ss_pred cccCCCCCCCCCCCCCcCCCccCCCeEEeEEeeee-cCCCCCCCCCC-CeeeecccCCCCCCC
Q psy4926 22 EREMSDCQVGSWEAWSECDTECGPGTMVRTRKAIQ-EPKNGGKHCPT-LTQKRSCLGTRCPHN 82 (176)
Q Consensus 22 ~C~~~~c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~~-~p~~gg~~C~~-~~e~~~C~~~~Cp~~ 82 (176)
+..++++.|+.|++|+.||.+||.|++.|+|.|.+ .|.+||..|.+ ..+++.|+..+|+..
T Consensus 95 p~~~vdG~Ws~Ws~WS~CS~tCG~G~~~R~R~C~~p~P~~GG~~C~G~~~~~~~Cn~~~Cp~~ 157 (410)
T 3ghm_A 95 PIAAVHGRWSSWGPRSPCSRSCGGGVVTRRRQCNNPRPAFGGRACVGADLQAEMCNTQACEKT 157 (410)
T ss_dssp SCCCBCCCCCCCCCCCCCSCSSSCEEEECCCCSCTTCCBSSCCCCCSCSCCEEEECCSCCSSC
T ss_pred CcCcccCCCCCCCCCCcccCCCCCCcccceeccCCCCcCCCCCCCCCCCeeeEeCCCcccCcc
Confidence 34468999999999999999999999999999995 67899999999 889999999999863
No 12
>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of BAS residues, extracellular matrix, glycoprotein, hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo sapiens}
Probab=98.96 E-value=6.5e-11 Score=101.31 Aligned_cols=58 Identities=34% Similarity=0.753 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCcCCCccCCCeEEeEEeeee-cCCCCCCCCCC-CeeeecccCCCCCCC
Q psy4926 25 MSDCQVGSWEAWSECDTECGPGTMVRTRKAIQ-EPKNGGKHCPT-LTQKRSCLGTRCPHN 82 (176)
Q Consensus 25 ~~~c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~~-~p~~gg~~C~~-~~e~~~C~~~~Cp~~ 82 (176)
++++.|+.|++|+.|+.+||.|++.|.|.|.+ .|..||..|.+ ..+++.|+..+||..
T Consensus 304 ~~~g~w~~Ws~ws~Cs~tCG~G~~~r~R~C~~~~p~~gg~~C~g~~~~~~~C~~~~Cp~~ 363 (378)
T 2rjq_A 304 SSHGNWGSWGSWGQCSRSCGGGVQFAYRHCNNPAPRNNGRYCTGKRAIYRSCSLMPCPPN 363 (378)
T ss_dssp ------------------------------------------------------------
T ss_pred CcCCCcCCCCCCCCcCCcCCCCcEEeeeccCCCCCCCCCCCCCCCCeEEeecCCCCCcCC
Confidence 47889999999999999999999999999995 67889999998 778889988777643
No 13
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=98.66 E-value=2.9e-09 Score=86.93 Aligned_cols=59 Identities=27% Similarity=0.644 Sum_probs=4.2
Q ss_pred hhccccC--CCCCCCCCCCCCcCCCccCCCeEEeEEeeeecCCCCCCCCCCCeeeecccCCCCCCCCC
Q psy4926 19 EEEEREM--SDCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGTRCPHNPR 84 (176)
Q Consensus 19 e~~~C~~--~~c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~~~p~~gg~~C~~~~e~~~C~~~~Cp~~~~ 84 (176)
..+.|.. .+..|+.|++|+.||.+||.|+++|.|.|.++ .|.+. +++.|+..+||.+..
T Consensus 206 ~~~iC~~v~~~~~~~~w~~ws~Cs~~cg~g~~~r~r~c~~~------~c~~~-~~~~C~~~~Cp~~~~ 266 (281)
T 4hqf_A 206 MKAVCVEVEKTASCGVWDEWSPCSVTCGKGTRSRKREILHE------GCTSE-LQEQCEEERCLPKRE 266 (281)
T ss_dssp HHHHHHHHTC----------------------------------------------------------
T ss_pred ccccCCCccCCCCCCCCCCCCccccccCCCcceEEEecCCC------CCCCC-eeeeeCCCCCcCCCC
Confidence 4456654 34688999999999999999999999999863 58887 889999999997653
No 14
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*
Probab=98.60 E-value=8.3e-09 Score=97.29 Aligned_cols=65 Identities=25% Similarity=0.658 Sum_probs=57.4
Q ss_pred hhhhccccC----CCCCCCCCCCCCcCCCccCCCeEEeEEeeeecCCCCCCCCCC-CeeeecccC-CCCCCCC
Q psy4926 17 EEEEEEREM----SDCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPT-LTQKRSCLG-TRCPHNP 83 (176)
Q Consensus 17 ~~e~~~C~~----~~c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~~~p~~gg~~C~~-~~e~~~C~~-~~Cp~~~ 83 (176)
..|+++|+. ++|.|+.|++|+.|+. |+ |.+.|.|.|..++..||..|++ +.+++.|+. .+||...
T Consensus 46 ~~e~~~C~~~~Cp~~c~w~~Ws~Ws~Cs~-C~-g~~~R~R~~~~~~~~gg~~C~g~~~e~~~C~~~~~Cp~~~ 116 (913)
T 3t5o_A 46 KQETRECNWQRCPINCLLGDFGPWSDCDP-CI-EKQSKVRSVLRPSQFGGQPCTAPLVAFQPCIPSKLCKIEE 116 (913)
T ss_dssp CEEEEEECCSCCCBCCEECCCCCCCCCCS-SS-CEECCBCCEEECEETTCCCCCSCSBCCEECCCSSSSCCCC
T ss_pred CceeeeeccccccccccccccCCccCCCC-cc-cccceeeEeccCccCCCCCCCCCcccccccCCccCCCccc
Confidence 678889984 5667999999999999 97 9999999999888999999998 889999998 8898654
No 15
>3vdj_A Circumsporozoite (CS) protein; TSR, ATSR, cell invasion; 1.70A {Plasmodium falciparum} PDB: 3vdk_A 3vdl_A
Probab=98.43 E-value=3.2e-08 Score=66.21 Aligned_cols=50 Identities=30% Similarity=0.637 Sum_probs=37.5
Q ss_pred CCCCCCcCCCccCCCeEEeEEeeee-cCCCCCCCCCCCeeeecccCCCCCCC
Q psy4926 32 SWEAWSECDTECGPGTMVRTRKAIQ-EPKNGGKHCPTLTQKRSCLGTRCPHN 82 (176)
Q Consensus 32 ~Ws~Ws~CS~tCG~G~r~R~R~c~~-~p~~gg~~C~~~~e~~~C~~~~Cp~~ 82 (176)
-|++|+.||.|||.|++.|.|.|.+ .|.+++.++. ..+++.|.+..||..
T Consensus 22 vtS~WS~CSvTCG~Gvq~R~R~C~nP~P~~~~~~~~-d~E~e~~~~~~~~~~ 72 (77)
T 3vdj_A 22 LSTEWSPCSVTCGNGIQVRIKPGSANKPKDELDYAN-DIEKKICKMEKCPHH 72 (77)
T ss_dssp CSSSCCCCSCSSSEEEEEEECGGGTTSCGGGCCHHH-HEEEEEEECSCCCC-
T ss_pred ccccCCCCCCcCCCCeEEeeecCCCCCCcccCccCc-chhhhhcccccCCcc
Confidence 4689999999999999999999995 4444332122 468888888888753
No 16
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=98.33 E-value=4.1e-07 Score=81.30 Aligned_cols=57 Identities=25% Similarity=0.597 Sum_probs=49.2
Q ss_pred cccCCCCCCCCCCCCCcCCCccCCCeEEeEEeeeecCCCCCCCCCC-CeeeecccC-CCCCC
Q psy4926 22 EREMSDCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPT-LTQKRSCLG-TRCPH 81 (176)
Q Consensus 22 ~C~~~~c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~~~p~~gg~~C~~-~~e~~~C~~-~~Cp~ 81 (176)
+| ++||.|++|++|++|+ +|+ +.++|.|.+..+++.||..|++ +.+++.|.. .+|+.
T Consensus 6 ~~-pv~C~~s~ws~Ws~C~-~C~-~~~~R~R~v~~p~q~gG~~C~~~l~d~~~C~~~~~C~~ 64 (537)
T 3ojy_B 6 LM-PIDCELSSWSSWTTCD-PCQ-KKRYRYAYLLQPSQFHGEPCNFSDKEVEDCVTNRPCRS 64 (537)
T ss_dssp -C-CBCCEECCCCCCCCCB-TTT-TEEEEECCEEECEETTCCCCCSCSEEEEECCCCCCCCC
T ss_pred CC-CcccccCCCCCCCCCC-CCC-CceEeeeeeccccccCCCcCccchhhhccCCCcccccc
Confidence 44 6899999999999999 598 6799999999999999999998 789999965 56743
No 17
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=98.19 E-value=1.5e-06 Score=77.99 Aligned_cols=55 Identities=31% Similarity=0.745 Sum_probs=47.5
Q ss_pred CCCCCCCCCCCCCcCCCccCCCeEEeEEeeeecCCCCCCCCCC-CeeeecccC-CCCCC
Q psy4926 25 MSDCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPT-LTQKRSCLG-TRCPH 81 (176)
Q Consensus 25 ~~~c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~~~p~~gg~~C~~-~~e~~~C~~-~~Cp~ 81 (176)
++||.|++|++|++|+ +|+ +.++|.|....+++.||.+|++ +.+++.|.. ..|+.
T Consensus 6 pv~C~~s~ws~Ws~C~-~C~-~~~~R~R~v~~p~q~gG~~C~~~l~d~~~C~~~~~c~~ 62 (554)
T 3ojy_A 6 AVTCQLSNWSEWTDCF-PCQ-DKKYRHRSLLQPNKFGGTICSGDIWDQASCSSSTTCVR 62 (554)
T ss_dssp CCCCEECCCCCCCCCC-TTT-CEEEEECCEEECBCSSCCCCCSCSEEEEECCCCCCC--
T ss_pred CccCcCCCCCCCCCCC-CCC-CccEeeEeeccccccCCCCCCCccccccCCCCCCCCcc
Confidence 6999999999999998 697 5699999999999999999998 789999976 45753
No 18
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=98.15 E-value=6.9e-07 Score=79.83 Aligned_cols=47 Identities=28% Similarity=0.645 Sum_probs=37.0
Q ss_pred CCCCCCCCCCCCCcCCCccCCCeEEeEEeeee-cCCCCCCCCCC-Ceeeeccc
Q psy4926 25 MSDCQVGSWEAWSECDTECGPGTMVRTRKAIQ-EPKNGGKHCPT-LTQKRSCL 75 (176)
Q Consensus 25 ~~~c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~~-~p~~gg~~C~~-~~e~~~C~ 75 (176)
++|+.|+.|++|+.|+ .|++.|+|.|.+ .|.+||..|.| ..+++.|+
T Consensus 489 pv~G~Ws~Ws~Ws~Cs----~G~~~R~R~C~~p~P~~gG~~C~G~~~~~~~C~ 537 (537)
T 3ojy_B 489 PIDGKWNCWSNWSSCS----GRRKTRQRQCNNPPPQNGGSPCSGPASETLDCS 537 (537)
T ss_dssp CCCCCCCCCCCCCCSS----SEEEECCTTTTCCSSCC-----CCCSEEEECC-
T ss_pred ccCCCCCCCCCCCCcC----CCceecccccCCCCCCCCCCcCCCCCcceecCc
Confidence 6899999999999998 689999999995 68899999999 78888884
No 19
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=98.08 E-value=1.5e-06 Score=77.96 Aligned_cols=48 Identities=33% Similarity=0.763 Sum_probs=32.5
Q ss_pred cccCCCCCCCCCCCCCcCCCccCCCeEEeEEeeee-cCCCCCCCCCC-Ceeeecc
Q psy4926 22 EREMSDCQVGSWEAWSECDTECGPGTMVRTRKAIQ-EPKNGGKHCPT-LTQKRSC 74 (176)
Q Consensus 22 ~C~~~~c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~~-~p~~gg~~C~~-~~e~~~C 74 (176)
+| ++|+.|+.|++|+.|| .|++.|+|.|.+ .|.+||..|.| ..+++.|
T Consensus 505 ~~-pvdG~Ws~Ws~Ws~Cs----~G~~~R~R~C~~P~P~~gG~~C~G~~~e~~~C 554 (554)
T 3ojy_A 505 GA-KADGSWSCWSSWSVCR----AGIQERRRECDNPAPQNGGASCPGRKVQTQAC 554 (554)
T ss_dssp -C-CCCCCCCCCCCCBCCS----SSCCEEECCC----------CCCSCSEEEC--
T ss_pred CC-CCCCCcccCCCCCCCC----CCCceeeeecCCCCCCCCCCCCCCCCcccCCC
Confidence 44 5899999999999998 589999999995 58999999999 7787766
No 20
>1vex_A F-spondin; TSR, cell adhesion; NMR {Rattus norvegicus}
Probab=97.52 E-value=8.9e-05 Score=46.12 Aligned_cols=29 Identities=17% Similarity=0.129 Sum_probs=25.7
Q ss_pred CCCCCCCCCCCCccCCCCCCCCceEEeeec
Q psy4926 117 PGHGTMDRSTRWSALSTPHCHGRWMRLQVE 146 (176)
Q Consensus 117 ~~~~~~~~w~~Ws~Cs~~~Cgg~~~~~~~~ 146 (176)
++++.|++|+.|+.|+.+ ||++.+.+.|.
T Consensus 2 pv~~~ws~Ws~Ws~CS~t-CG~G~~~R~R~ 30 (56)
T 1vex_A 2 SIPCLLSPWSEWSDCSVT-CGKGMRTRQRM 30 (56)
T ss_dssp CCCCCBCCCCCCCCCSCS-SBSCEEEEECC
T ss_pred CcCCcccCCCCCCCcCcc-CCCCCEEEEEe
Confidence 467889999999999999 99988888777
No 21
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=97.42 E-value=6.3e-05 Score=60.73 Aligned_cols=55 Identities=31% Similarity=0.799 Sum_probs=39.5
Q ss_pred hccccC--CCCCCCCCCCCCcCCCccCCCeEEeEEeeeecCCCCCCCCCCCeeeecccCCCCCC
Q psy4926 20 EEEREM--SDCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGTRCPH 81 (176)
Q Consensus 20 ~~~C~~--~~c~~s~Ws~Ws~CS~tCG~G~r~R~R~c~~~p~~gg~~C~~~~e~~~C~~~~Cp~ 81 (176)
.+.|.. .+..|++|++|+.|+.+||.|++.|+|.|.++ .|.+ ..+..|....||.
T Consensus 204 ~~iC~~~~~~a~~~~w~~~s~c~~~cg~g~~~r~r~~~~~------~~~~-~~~~~~~~~~~~~ 260 (266)
T 4hqo_A 204 AKVCTEVERVANCGPWDPWTACSVTCGRGTHSRSRPSLHE------KCTT-HMVSECEEGECPH 260 (266)
T ss_dssp CCCEEEEEEEEECCCCCCCCCCSSSSEEEEEEEECCCSST------TCCC-EEEEEEEESCCCC
T ss_pred hhhcccccccccccCcCCCCccccccCCCceeeeEeeCCC------CCCC-CcCcccccCCCCc
Confidence 344543 34589999999999999999999999999854 3553 2334555555654
No 22
>2bbx_A Trap, thrombospondin-related anonymous protein; elongated three-stranded structure, cell adhesion; NMR {Plasmodium falciparum}
Probab=97.14 E-value=0.00043 Score=42.11 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=24.0
Q ss_pred CCCCCCCCCCccCCCCCCCCceEEeeecc
Q psy4926 119 HGTMDRSTRWSALSTPHCHGRWMRLQVES 147 (176)
Q Consensus 119 ~~~~~~w~~Ws~Cs~~~Cgg~~~~~~~~~ 147 (176)
...|+.|+.|+.|+.+ ||++.+.+.|.-
T Consensus 2 ~~~w~~Ws~Ws~CS~t-CG~G~~~R~r~C 29 (49)
T 2bbx_A 2 SASCGVWDEWSPCSVT-CGKGTRSRKREI 29 (49)
T ss_dssp CCCCSCCCCCCCCSSS-SSSSEEEEECCC
T ss_pred CCcCCCCCCcccccCc-CCCCeEEEEeee
Confidence 3568999999999999 999988887773
No 23
>1szl_A F-spondin; TSR, cell adhesion; NMR {Rattus norvegicus}
Probab=96.50 E-value=0.00078 Score=42.65 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=22.7
Q ss_pred CCCCCCCCCCccCC-CCCCCCceEEeeec
Q psy4926 119 HGTMDRSTRWSALS-TPHCHGRWMRLQVE 146 (176)
Q Consensus 119 ~~~~~~w~~Ws~Cs-~~~Cgg~~~~~~~~ 146 (176)
++.|++|+.|+.|+ .+ |+++.+.+.|.
T Consensus 4 ~C~ws~Ws~Ws~CS~~t-CG~G~~~R~R~ 31 (61)
T 1szl_A 4 TCIYSNWSPWSACSSST-CEKGKRMRQRM 31 (61)
T ss_dssp SEEECSCCCCCCCSCSS-SSCEECCEECC
T ss_pred cCCcCCCCCCCCCCCcc-CCCCeeEEEee
Confidence 55789999999999 69 99887777665
No 24
>3ghm_A A disintegrin and metalloproteinase with thrombos motifs 13; thrombospondin type-1 motif, beta sandwich, hydrolase; HET: NAG FUC BGC; 2.60A {Homo sapiens} PDB: 3ghn_A* 3vn4_A*
Probab=95.36 E-value=0.014 Score=50.44 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=28.6
Q ss_pred CCCCCCCCCCCCCccCCCCCCCCceEEeeec-cccC
Q psy4926 116 CPGHGTMDRSTRWSALSTPHCHGRWMRLQVE-SALR 150 (176)
Q Consensus 116 C~~~~~~~~w~~Ws~Cs~~~Cgg~~~~~~~~-~~~~ 150 (176)
.++++.|+.|+.|+.|+.+ ||++.+.+.|. .++.
T Consensus 97 ~~vdG~Ws~Ws~WS~CS~t-CG~G~~~R~R~C~~p~ 131 (410)
T 3ghm_A 97 AAVHGRWSSWGPRSPCSRS-CGGGVVTRRRQCNNPR 131 (410)
T ss_dssp CCBCCCCCCCCCCCCCSCS-SSCEEEECCCCSCTTC
T ss_pred CcccCCCCCCCCCCcccCC-CCCCcccceeccCCCC
Confidence 3578999999999999999 99998888777 5533
No 25
>3vdj_A Circumsporozoite (CS) protein; TSR, ATSR, cell invasion; 1.70A {Plasmodium falciparum} PDB: 3vdk_A 3vdl_A
Probab=94.99 E-value=0.011 Score=39.39 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=21.6
Q ss_pred CCCCCCccCCCCCCCCceEEeeeccc
Q psy4926 123 DRSTRWSALSTPHCHGRWMRLQVESA 148 (176)
Q Consensus 123 ~~w~~Ws~Cs~~~Cgg~~~~~~~~~~ 148 (176)
..++.|+.||.+ ||++.+.+.|..+
T Consensus 21 ~vtS~WS~CSvT-CG~Gvq~R~R~C~ 45 (77)
T 3vdj_A 21 SLSTEWSPCSVT-CGNGIQVRIKPGS 45 (77)
T ss_dssp TCSSSCCCCSCS-SSEEEEEEECGGG
T ss_pred cccccCCCCCCc-CCCCeEEeeecCC
Confidence 457899999999 9999999988844
No 26
>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of BAS residues, extracellular matrix, glycoprotein, hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo sapiens}
Probab=94.06 E-value=0.0092 Score=50.54 Aligned_cols=32 Identities=22% Similarity=0.366 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCccCCCCCCCCceEEeeec
Q psy4926 114 YRCPGHGTMDRSTRWSALSTPHCHGRWMRLQVE 146 (176)
Q Consensus 114 ~~C~~~~~~~~w~~Ws~Cs~~~Cgg~~~~~~~~ 146 (176)
.+|++++.|+.|+.|+.|+.+ ||++.+.+.|.
T Consensus 301 ~~~~~~g~w~~Ws~ws~Cs~t-CG~G~~~r~R~ 332 (378)
T 2rjq_A 301 YSTSSHGNWGSWGSWGQCSRS-CGGGVQFAYRH 332 (378)
T ss_dssp ---------------------------------
T ss_pred cCCCcCCCcCCCCCCCCcCCc-CCCCcEEeeec
Confidence 568899999999999999999 99888776665
No 27
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=92.42 E-value=0.024 Score=45.58 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=0.0
Q ss_pred CCCCCCCCCCccCCCCCCCCceEEeeec
Q psy4926 119 HGTMDRSTRWSALSTPHCHGRWMRLQVE 146 (176)
Q Consensus 119 ~~~~~~w~~Ws~Cs~~~Cgg~~~~~~~~ 146 (176)
...|+.|+.|+.||.+ ||++.+.+.|.
T Consensus 216 ~~~~~~w~~ws~Cs~~-cg~g~~~r~r~ 242 (281)
T 4hqf_A 216 TASCGVWDEWSPCSVT-CGKGTRSRKRE 242 (281)
T ss_dssp ----------------------------
T ss_pred CCCCCCCCCCCccccc-cCCCcceEEEe
Confidence 3568899999999999 99998888766
No 28
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=86.31 E-value=0.31 Score=38.69 Aligned_cols=27 Identities=15% Similarity=0.133 Sum_probs=23.4
Q ss_pred CCCCCCCCCCccCCCCCCCCceEEeeec
Q psy4926 119 HGTMDRSTRWSALSTPHCHGRWMRLQVE 146 (176)
Q Consensus 119 ~~~~~~w~~Ws~Cs~~~Cgg~~~~~~~~ 146 (176)
...|+.|+.|+.|+.+ ||++...+.|.
T Consensus 213 ~a~~~~w~~~s~c~~~-cg~g~~~r~r~ 239 (266)
T 4hqo_A 213 VANCGPWDPWTACSVT-CGRGTHSRSRP 239 (266)
T ss_dssp EEECCCCCCCCCCSSS-SEEEEEEEECC
T ss_pred cccccCcCCCCccccc-cCCCceeeeEe
Confidence 4578999999999999 99888777776
Done!