RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4926
         (176 letters)



>d1lsla2 g.60.1.1 (A:470-528) Thrombospondin-1 (TSP-1) {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 59

 Score = 47.6 bits (113), Expect = 8e-09
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 27 DCQVGSWEAWSECDTECGPGTMVRTRKAIQ-EPKNGGKHCP-TLTQKRSCLGTRC 79
          +   G W  W  C   CG G   R+R      P+ GGK C   +T+ + C    C
Sbjct: 5  NGGWGPWSPWDICSVTCGGGVQKRSRLCNNPTPQFGGKDCVGDVTENQICNKQDC 59


>d1lsla1 g.60.1.1 (A:416-469) Thrombospondin-1 (TSP-1) {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 54

 Score = 43.0 bits (101), Expect = 3e-07
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 27 DCQVGSWEAWSECDTECGPGTMVRTRKAIQ-EPKNGGKHCP-TLTQKRSC 74
          D     W  WS C   CG G + R R      P+  GK C     + ++C
Sbjct: 2  DGGWSHWSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARETKAC 51


>d1vmoa_ b.77.1.1 (A:) Vitelline membrane outer protein-I (VMO-I)
           {Hen (Gallus gallus) [TaxId: 9031]}
          Length = 163

 Score = 35.6 bits (81), Expect = 0.001
 Identities = 9/115 (7%), Positives = 21/115 (18%), Gaps = 4/115 (3%)

Query: 26  SDCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTLTQKRSCLGTRCPHNPRS 85
           +    G W     C +    G  ++   +     +   +   L             +   
Sbjct: 13  NGGHWGKWGIRQFCHSGYANGFALKVEPSQFGRDDTALNGIRLRCLDGS----VIESLVG 68

Query: 86  ALKGRESINMRGKVCVRCESQAMRPNLGYRCPGHGTMDRSTRWSALSTPHCHGRW 140
                 S  +     +   S     + G          +               W
Sbjct: 69  KWGTWTSFLVCPTGYLVSFSLRSEKSQGGGDDTAANNIQFRCSDEAVLVGDGLSW 123



 Score = 29.1 bits (64), Expect = 0.20
 Identities = 10/77 (12%), Positives = 20/77 (25%), Gaps = 4/77 (5%)

Query: 9   GRDKEEEEEEEEEEREMSDCQVGSWEAWSECDTECGPGTMVRTRKAIQEPKNGGKHCPTL 68
             +       +    E    + G+W ++  C T       +R+ K+      GG      
Sbjct: 49  ALNGIRLRCLDGSVIESLVGKWGTWTSFLVCPTGYLVSFSLRSEKSQ----GGGDDTAAN 104

Query: 69  TQKRSCLGTRCPHNPRS 85
             +  C           
Sbjct: 105 NIQFRCSDEAVLVGDGL 121



 Score = 26.4 bits (57), Expect = 1.3
 Identities = 8/43 (18%), Positives = 15/43 (34%)

Query: 11  DKEEEEEEEEEEREMSDCQVGSWEAWSECDTECGPGTMVRTRK 53
           +  +    +E          G +  WS+    CG  T V + +
Sbjct: 104 NNIQFRCSDEAVLVGDGLSWGRFGPWSKRCKICGLQTKVESPQ 146


>d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 388

 Score = 28.6 bits (64), Expect = 0.42
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 137 HGRWMRLQVESALRPGLVDNFIS 159
           H + +R+ VES LR GL  +F  
Sbjct: 301 HIKALRVYVESVLRYGLPPHFNI 323


>d1us7b_ a.205.1.1 (B:) Hsp90 co-chaperone CDC37 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 201

 Score = 24.3 bits (53), Expect = 7.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 2   RVRKGEEGRDKEEEEEEEEEERE 24
           RVR   + R ++  +E EEEER+
Sbjct: 115 RVRGRAKLRIEKAMKEYEEEERK 137


>d2nn5a1 d.129.3.5 (A:1-160) Hypothetical protein EF2215
           {Enterococcus faecalis [TaxId: 1351]}
          Length = 160

 Score = 23.9 bits (51), Expect = 8.9
 Identities = 5/30 (16%), Positives = 7/30 (23%)

Query: 128 WSALSTPHCHGRWMRLQVESALRPGLVDNF 157
           W  L+      +W        L       F
Sbjct: 28  WRYLTETDKLKQWFPELEIGELGVNGFWRF 57


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.133    0.437 

Gapped
Lambda     K      H
   0.267   0.0510    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 706,889
Number of extensions: 31580
Number of successful extensions: 121
Number of sequences better than 10.0: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 17
Length of query: 176
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 97
Effective length of database: 1,322,926
Effective search space: 128323822
Effective search space used: 128323822
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.6 bits)