Query psy4929
Match_columns 633
No_of_seqs 563 out of 2358
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 21:26:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4929.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4929hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2075|consensus 100.0 1.4E-48 3E-53 411.9 17.3 305 3-620 100-411 (521)
2 KOG4441|consensus 100.0 5.8E-36 1.3E-40 338.7 21.2 231 3-532 22-255 (571)
3 PHA02713 hypothetical protein; 100.0 2.1E-35 4.5E-40 334.6 19.1 228 3-532 11-243 (557)
4 PHA03098 kelch-like protein; P 100.0 1.7E-33 3.7E-38 317.9 18.8 145 332-533 81-232 (534)
5 PHA02790 Kelch-like protein; P 100.0 2.4E-32 5.1E-37 304.9 15.2 124 332-516 96-223 (480)
6 KOG4350|consensus 100.0 2E-31 4.3E-36 275.6 9.5 234 3-535 30-264 (620)
7 PF07707 BACK: BTB And C-termi 99.8 3.5E-19 7.5E-24 157.1 4.8 102 409-519 1-103 (103)
8 PF08005 PHR: PHR domain ; In 99.7 9.8E-19 2.1E-23 166.1 3.3 96 88-186 1-105 (152)
9 KOG2075|consensus 99.7 2.1E-18 4.5E-23 183.7 5.3 103 84-188 374-478 (521)
10 smart00875 BACK BTB And C-term 99.7 8.8E-17 1.9E-21 140.4 9.7 98 409-516 1-99 (101)
11 KOG0783|consensus 99.5 8.1E-14 1.8E-18 155.5 10.7 75 5-83 542-633 (1267)
12 KOG1723|consensus 99.4 2E-13 4.3E-18 128.1 2.7 125 175-300 18-142 (162)
13 PF00651 BTB: BTB/POZ domain; 99.3 3.9E-13 8.5E-18 119.6 1.8 98 8-108 1-105 (111)
14 KOG2838|consensus 99.3 3.3E-13 7.2E-18 134.9 -3.0 259 3-356 116-388 (401)
15 KOG4591|consensus 99.2 1.2E-11 2.6E-16 118.9 6.6 83 332-463 142-224 (280)
16 smart00225 BTB Broad-Complex, 99.1 2.3E-11 4.9E-16 102.4 3.0 84 19-106 1-89 (90)
17 KOG1428|consensus 99.1 2E-11 4.3E-16 140.9 0.7 108 86-200 1054-1170(3738)
18 KOG4682|consensus 99.0 8.9E-10 1.9E-14 115.9 10.0 110 317-478 135-246 (488)
19 PTZ00033 60S ribosomal protein 98.7 6.1E-09 1.3E-13 93.6 3.0 70 182-254 28-97 (125)
20 PRK14891 50S ribosomal protein 98.1 1.9E-06 4E-11 77.9 2.5 53 167-220 11-63 (131)
21 KOG0783|consensus 97.7 1.2E-05 2.6E-10 91.4 2.0 108 6-116 692-817 (1267)
22 PF01246 Ribosomal_L24e: Ribos 97.5 4.2E-05 9E-10 63.2 1.0 56 167-223 10-65 (71)
23 COG2075 RPL24A Ribosomal prote 97.3 0.00011 2.3E-09 59.0 1.9 52 169-221 12-63 (66)
24 KOG1722|consensus 97.0 0.0002 4.4E-09 65.5 0.2 79 172-254 13-94 (155)
25 cd00472 Ribosomal_L24e_L24 Rib 96.7 0.00072 1.6E-08 52.9 1.5 44 167-211 10-53 (54)
26 PRK00807 50S ribosomal protein 96.7 0.00072 1.6E-08 52.6 1.3 41 172-212 11-52 (52)
27 KOG2838|consensus 93.4 0.02 4.4E-07 58.5 -0.3 84 3-86 221-328 (401)
28 PHA02713 hypothetical protein; 93.3 0.13 2.7E-06 59.4 5.8 32 406-437 93-124 (557)
29 PF02214 BTB_2: BTB/POZ domain 91.3 0.054 1.2E-06 46.9 -0.3 78 20-102 1-89 (94)
30 KOG2716|consensus 90.8 0.21 4.5E-06 50.8 3.3 89 20-113 7-104 (230)
31 PF00651 BTB: BTB/POZ domain; 90.4 0.23 4.9E-06 43.6 2.9 37 315-355 73-110 (111)
32 PF03931 Skp1_POZ: Skp1 family 89.2 0.38 8.2E-06 38.7 3.0 56 20-80 3-58 (62)
33 KOG0511|consensus 88.6 0.071 1.5E-06 57.0 -2.0 56 31-87 301-361 (516)
34 KOG0511|consensus 87.6 0.061 1.3E-06 57.4 -3.2 72 7-82 136-210 (516)
35 KOG1987|consensus 85.8 0.36 7.8E-06 50.7 1.4 54 31-84 110-164 (297)
36 KOG4441|consensus 85.5 1 2.3E-05 52.1 5.0 51 199-254 15-68 (571)
37 PF11822 DUF3342: Domain of un 80.2 1.3 2.9E-05 47.0 2.8 60 403-462 71-134 (317)
38 PHA03098 kelch-like protein; P 74.8 7.8 0.00017 44.1 7.4 38 14-55 6-45 (534)
39 smart00225 BTB Broad-Complex, 71.7 3 6.5E-05 34.0 2.3 29 317-349 62-90 (90)
40 KOG2714|consensus 71.0 3.2 6.9E-05 45.6 2.8 63 20-86 13-79 (465)
41 KOG4350|consensus 69.5 7.1 0.00015 42.6 5.0 31 331-361 152-182 (620)
42 KOG3473|consensus 68.8 6.8 0.00015 34.5 3.8 56 20-79 19-77 (112)
43 smart00512 Skp1 Found in Skp1 67.2 3.2 6.9E-05 36.7 1.6 59 20-82 4-64 (104)
44 PF07707 BACK: BTB And C-termi 66.2 7.3 0.00016 33.5 3.7 90 332-457 4-102 (103)
45 PF01466 Skp1: Skp1 family, di 52.2 4.2 9.2E-05 34.2 -0.3 25 332-356 19-43 (78)
46 smart00875 BACK BTB And C-term 49.3 43 0.00094 28.2 5.6 27 332-358 4-30 (101)
47 PF13313 DUF4082: Domain of un 44.5 36 0.00078 32.5 4.6 74 106-184 23-96 (149)
48 KOG1428|consensus 41.3 19 0.0004 45.3 2.6 37 586-622 1053-1090(3738)
49 PF11822 DUF3342: Domain of un 39.5 26 0.00056 37.5 3.1 37 316-356 68-104 (317)
50 PHA02790 Kelch-like protein; P 37.8 31 0.00067 39.1 3.6 46 6-56 11-56 (480)
51 KOG1724|consensus 27.3 25 0.00054 34.0 0.6 33 320-356 95-127 (162)
52 KOG1665|consensus 20.7 1E+02 0.0022 31.5 3.3 86 19-108 10-105 (302)
No 1
>KOG2075|consensus
Probab=100.00 E-value=1.4e-48 Score=411.90 Aligned_cols=305 Identities=48% Similarity=0.799 Sum_probs=284.2
Q ss_pred cHHHHHHHHHhCCCcccEEEEeCCC-ccceEEEeEEeEeeccChhhhhhhcCCCCCC-CCeEEcCCCCHhhhhhhheecc
Q psy4929 3 LVKERFAFMFNNEILCDVHFIVGRE-TELQRIPAHRFVLSVGSVVFDAMFNGTLATR-SDEIELPDVEPAAFLALLRCSM 80 (633)
Q Consensus 3 tl~~~l~~l~~~~~~sDV~f~v~~~-~~~~~f~aHk~VLaa~S~yF~amf~~~~~~~-~~~I~l~dv~~~~f~~lL~ylY 80 (633)
|+++++..|++++.++||.|+||++ ++.++|||||.|||..|++|.+||+|++..+ ..+|++||++|.+|.++|+|+|
T Consensus 100 t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl~~L~flY 179 (521)
T KOG2075|consen 100 TMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAFLAFLRFLY 179 (521)
T ss_pred hHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHhHHHHHHHh
Confidence 7899999999999999999999963 4569999999999999999999999999755 8999999999999999999999
Q ss_pred cCcchhhhhhhhhccccccCCchhhhhhhhhhhhhhccccccccccCCCcceEEEEEEEecCCceeecCCccccccCCCc
Q psy4929 81 TGKEQVVHRFQHIESRWGYSGTSDRIRFSVDRRIFVVGFGLYGCIHGPTEYDVQMQLVRTANGKVIAGNRTSFACDGSTF 160 (633)
Q Consensus 81 TG~~~~~~rfq~la~~w~y~gl~d~i~f~vdk~I~i~gfglygs~~~~~~y~v~i~l~~~~~~~~l~~~~~~~~~d~~~~ 160 (633)
++.+.+.
T Consensus 180 sdev~~~------------------------------------------------------------------------- 186 (521)
T KOG2075|consen 180 SDEVKLA------------------------------------------------------------------------- 186 (521)
T ss_pred cchhhhh-------------------------------------------------------------------------
Confidence 8665410
Q ss_pred ceeeecccceeecCCcEEEEeeeeeeeeccccccccccccccCCccccchhhhhhhhccCCccCcchhhhhccCCCccch
Q psy4929 161 TSRVMFKEPVEVMPNISYTACATLKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKDLAVDPSFEFAKRRNVPLKYD 240 (633)
Q Consensus 161 ~~rv~f~~p~~~~~~~~y~~~a~~~~~~f~~~~c~k~~~~~~~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~ 240 (633)
|
T Consensus 187 -------------~------------------------------------------------------------------ 187 (521)
T KOG2075|consen 187 -------------A------------------------------------------------------------------ 187 (521)
T ss_pred -------------H------------------------------------------------------------------
Confidence 0
Q ss_pred hhhhhhhhhhhhhhccccccchhhHHHHHhhhhhhhhhhhhhhhhhheeeeecCcchhhhhhhhhhhhccceeeeceeee
Q psy4929 241 REFWNKTVEAIKKVEHIKTKRHNLYLAQRLRKAREVETARDIKAVQRDIAILNDPTEVIRAKKKKMVEAGIVEEIHEMQI 320 (633)
Q Consensus 241 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 320 (633)
T Consensus 188 -------------------------------------------------------------------------------- 187 (521)
T KOG2075|consen 188 -------------------------------------------------------------------------------- 187 (521)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCcchHHHHHHhhccCchHHHHHHHHhhhhcCchhhhhcccccccccccccCCCCCCCCCCCchhhhcccccCCCC
Q psy4929 321 RESNLLHGKQILLTTARLFDEPQLAALCLDTIDKNTPDALAADGFTDKVVTLSSFSSSDGRKPSAPDSRCRSRLSANPGI 400 (633)
Q Consensus 321 ~~~~~~~~~~~lL~~Ad~f~~~~l~~~C~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~c~~~L~~~~~~ 400 (633)
+|+.- +|.+|++|.++.|.+.|+++|.+.+
T Consensus 188 --dtvi~----tl~~AkKY~VpaLer~CVkflr~~l-------------------------------------------- 217 (521)
T KOG2075|consen 188 --DTVIT----TLYAAKKYLVPALERQCVKFLRKNL-------------------------------------------- 217 (521)
T ss_pred --HHHHH----HHHHHHHhhhHHHHHHHHHHHHHhc--------------------------------------------
Confidence 01111 7999999999999999999999998
Q ss_pred CCCcchhcHHHHHHH-HhhcCChHHHHHHHHHHHhchHHHhcCCCCcccC--HHHHHhhhcCCCccccHHHHHHHHHHHH
Q psy4929 401 EPSAWQANLTYHCAP-ARLFDEPQLAALCLDTIDKNTPDALAADGFTDVD--RDTLCAVLERDTLRIREAKLFQAVIRWS 477 (633)
Q Consensus 401 ~~~l~~~Nc~~il~~-A~~~~~~~L~~~c~~fI~~nf~~v~~seeFl~Ls--~~~L~~iL~sD~L~v~E~~Vf~AvlrW~ 477 (633)
...|.|..+.+ |++++.|+|.+.|++.|+.+|++.+..|+|.+++ .++++++|.+|.|.++|..+|+|+++|+
T Consensus 218 ----~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~al~~EGf~did~~~dt~~evl~r~~l~~~e~~lfeA~lkw~ 293 (521)
T KOG2075|consen 218 ----MADNAFLELFQRAKLFDEPSLISICLEVIDKSFEDALTPEGFCDIDSTRDTYEEVLRRDTLEAREFRLFEAALKWA 293 (521)
T ss_pred ----CChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHhhhCccceeehhhHHHHHHHHHhhcccchhHHHHHHHHHhhc
Confidence 23688888888 9999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred hhhhcccCCCCChhhHHhhHHhhhhcCCCCCCCHHHHhcCCCCCCCCCchHHHHHHhhhhhhhhccCCCCCCCcchhHHH
Q psy4929 478 EAECTRQSLPITPENQRAVLGPSLTLVRFPLMSVEEFAAGPAQSGLLEDSQLVRLFLYFHVEEFAAGPAQSGLLEDSQLV 557 (633)
Q Consensus 478 ~~ec~r~~~~~d~~~R~~~l~~LL~~VRfplms~~~L~~~v~~~~ll~~~~~~~~~~y~~~~~~~~~p~~~~~~~~~e~~ 557 (633)
+.+|.|.+.+.+.++++.+++..|..||||+|..++++..+++++++++ .|+.
T Consensus 294 ~~e~~rs~~~~~~~~~~~vl~~~l~lirfp~m~~Eefa~~~e~sgIl~d---------------------------~e~~ 346 (521)
T KOG2075|consen 294 EAECQRSGGPVNGQNKRKVLGRALSLIRFPFMNIEEFARGVEQSGILTD---------------------------REPL 346 (521)
T ss_pred cCcchhhcCCCCccchhhhhhheeeeecccccchhhhccCccccCCccc---------------------------cchH
Confidence 9999999999999999999999999999999999999999999999888 6788
Q ss_pred HHhhhhccCCCCCccccCCCcccCCCCceeeeccccccCc--ccccCCCccEEEEecceeeeeee
Q psy4929 558 RLFLYFHVNPKPAIPFFDGPRCSMTGKEQVVHRFQHIESR--WGYSGTSDRIRGLIEGAVIREVL 620 (633)
Q Consensus 558 ~l~~~~~~~~k~~~~~~~~~R~g~~~~~~~v~rf~~~~~~--w~~~~~~~~i~~~~~~~~~~~~~ 620 (633)
++|+|+++.|+|.+.|..++|+|+..++|+++|||++++| |+|+|++|+|+|.||+||||.+.
T Consensus 347 ~~F~~~t~~P~P~l~f~~~~ra~ls~~~~~~~rfqr~~~R~q~~~~g~~D~i~F~vd~ri~Iagf 411 (521)
T KOG2075|consen 347 KLFLYFTAAPKPALDFVSRPRAGLSHKKLVRARFQRSETRQQWRYRGTSDRITFQVDRRIFIAGF 411 (521)
T ss_pred hhhhhhccCCCccccccCcccccccccccchhhhhcchhhhhhccccccccceeeeeeeEEEEec
Confidence 9999999999999999999999999999999999999999 99999999999999999999987
No 2
>KOG4441|consensus
Probab=100.00 E-value=5.8e-36 Score=338.70 Aligned_cols=231 Identities=26% Similarity=0.408 Sum_probs=212.4
Q ss_pred cHHHHHHHHHhCCCcccEEEEeCCCccceEEEeEEeEeeccChhhhhhhcCCCC-CCCCeEEcCCCCHhhhhhhheeccc
Q psy4929 3 LVKERFAFMFNNEILCDVHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLA-TRSDEIELPDVEPAAFLALLRCSMT 81 (633)
Q Consensus 3 tl~~~l~~l~~~~~~sDV~f~v~~~~~~~~f~aHk~VLaa~S~yF~amf~~~~~-~~~~~I~l~dv~~~~f~~lL~ylYT 81 (633)
.+.+.|+.|++.+.+|||++.+++ ++|+|||.||||+|+||++||+++++ +.+.+|++.++++.++..+++|+||
T Consensus 22 ~~l~~l~~lr~~~~lcDv~L~v~~----~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt 97 (571)
T KOG4441|consen 22 FLLQGLNELREEGLLCDVTLLVGD----REFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYT 97 (571)
T ss_pred HHHHHHHHHHHhCCCceEEEEECC----eeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhc
Confidence 357889999999999999999999 89999999999999999999999885 7889999999999999999999999
Q ss_pred CcchhhhhhhhhccccccCCchhhhhhhhhhhhhhccccccccccCCCcceEEEEEEEecCCceeecCCccccccCCCcc
Q psy4929 82 GKEQVVHRFQHIESRWGYSGTSDRIRFSVDRRIFVVGFGLYGCIHGPTEYDVQMQLVRTANGKVIAGNRTSFACDGSTFT 161 (633)
Q Consensus 82 G~~~~~~rfq~la~~w~y~gl~d~i~f~vdk~I~i~gfglygs~~~~~~y~v~i~l~~~~~~~~l~~~~~~~~~d~~~~~ 161 (633)
|++.+.
T Consensus 98 ~~i~i~-------------------------------------------------------------------------- 103 (571)
T KOG4441|consen 98 GKLEIS-------------------------------------------------------------------------- 103 (571)
T ss_pred ceEEec--------------------------------------------------------------------------
Confidence 987611
Q ss_pred eeeecccceeecCCcEEEEeeeeeeeeccccccccccccccCCccccchhhhhhhhccCCccCcchhhhhccCCCccchh
Q psy4929 162 SRVMFKEPVEVMPNISYTACATLKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKDLAVDPSFEFAKRRNVPLKYDR 241 (633)
Q Consensus 162 ~rv~f~~p~~~~~~~~y~~~a~~~~~~f~~~~c~k~~~~~~~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~r 241 (633)
T Consensus 104 -------------------------------------------------------------------------------- 103 (571)
T KOG4441|consen 104 -------------------------------------------------------------------------------- 103 (571)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhhhhhhccccccchhhHHHHHhhhhhhhhhhhhhhhhhheeeeecCcchhhhhhhhhhhhccceeeeceeeec
Q psy4929 242 EFWNKTVEAIKKVEHIKTKRHNLYLAQRLRKAREVETARDIKAVQRDIAILNDPTEVIRAKKKKMVEAGIVEEIHEMQIR 321 (633)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 321 (633)
T Consensus 104 -------------------------------------------------------------------------------- 103 (571)
T KOG4441|consen 104 -------------------------------------------------------------------------------- 103 (571)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCcchHHHHHHhhccCchHHHHHHHHhhhhcCchhhhhcccccccccccccCCCCCCCCCCCchhhhcccccCCCCC
Q psy4929 322 ESNLLHGKQILLTTARLFDEPQLAALCLDTIDKNTPDALAADGFTDKVVTLSSFSSSDGRKPSAPDSRCRSRLSANPGIE 401 (633)
Q Consensus 322 ~~~~~~~~~~lL~~Ad~f~~~~l~~~C~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~c~~~L~~~~~~~ 401 (633)
++|+ |.+|.+|++||++.+.+.|++||.+++
T Consensus 104 ~~nV----q~ll~aA~~lQi~~v~~~C~~fL~~~l--------------------------------------------- 134 (571)
T KOG4441|consen 104 EDNV----QELLEAASLLQIPEVVDACCEFLESQL--------------------------------------------- 134 (571)
T ss_pred hHhH----HHHHHHHHHhhhHHHHHHHHHHHHhcC---------------------------------------------
Confidence 0122 239999999999999999999999998
Q ss_pred CCcchhcHHHHHHHHhhcCChHHHHHHHHHHHhchHHHhcCCCCcccCHHHHHhhhcCCCcccc-HHHHHHHHHHHHhhh
Q psy4929 402 PSAWQANLTYHCAPARLFDEPQLAALCLDTIDKNTPDALAADGFTDVDRDTLCAVLERDTLRIR-EAKLFQAVIRWSEAE 480 (633)
Q Consensus 402 ~~l~~~Nc~~il~~A~~~~~~~L~~~c~~fI~~nf~~v~~seeFl~Ls~~~L~~iL~sD~L~v~-E~~Vf~AvlrW~~~e 480 (633)
+++||++|..+|+.|+|++|.+.+..||.+||.++.++++|++|+.++|..+|++|+|+|. |+.||+|+++|++|
T Consensus 135 ---~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~L~~~~l~~ll~~d~l~v~~E~~vf~a~~~Wv~~- 210 (571)
T KOG4441|consen 135 ---DPSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLLLSLEELIGLLSSDDLNVDSEEEVFEAAMRWVKH- 210 (571)
T ss_pred ---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhCCCHHHHHhhccccCCCcCCHHHHHHHHHHHHhc-
Confidence 4589999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred hcccCCCCChhhHHhhHHhhhhcCCCCCCCHHHHhcCCCCCCCCCch-HHHHH
Q psy4929 481 CTRQSLPITPENQRAVLGPSLTLVRFPLMSVEEFAAGPAQSGLLEDS-QLVRL 532 (633)
Q Consensus 481 c~r~~~~~d~~~R~~~l~~LL~~VRfplms~~~L~~~v~~~~ll~~~-~~~~~ 532 (633)
|.+.|+.+++++|++||||+|++.+|.+.+...++++.+ +|+++
T Consensus 211 --------d~~~R~~~~~~ll~~vr~~ll~~~~l~~~v~~~~~~~~~~~c~~~ 255 (571)
T KOG4441|consen 211 --------DFEEREEHLPALLEAVRLPLLPPQFLVEIVESEPLIKRDSACRDL 255 (571)
T ss_pred --------CHhhHHHHHHHHHHhcCccCCCHHHHHHHHhhhhhhccCHHHHHH
Confidence 578899999999999999999999999999999988764 34443
No 3
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=2.1e-35 Score=334.55 Aligned_cols=228 Identities=15% Similarity=0.215 Sum_probs=199.5
Q ss_pred cHHHHHHHHHhCCCcccEEEEeCCCccceEEEeEEeEeeccChhhhhhhcCCCC-C-CCCeEEcCCCCHhhhhhhheecc
Q psy4929 3 LVKERFAFMFNNEILCDVHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLA-T-RSDEIELPDVEPAAFLALLRCSM 80 (633)
Q Consensus 3 tl~~~l~~l~~~~~~sDV~f~v~~~~~~~~f~aHk~VLaa~S~yF~amf~~~~~-~-~~~~I~l~dv~~~~f~~lL~ylY 80 (633)
++++.|++|++++.+|||++.|+++ +.|+|||+||||+|+||++||+++|. + .+.+|+|.++++++|+.+|+|+|
T Consensus 11 ~~l~~l~~lr~~~~l~DV~L~v~~~---~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Y 87 (557)
T PHA02713 11 RVVSNISNLLDDDILCDVIITIGDG---EEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLY 87 (557)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCC---CEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhc
Confidence 5779999999999999999999832 89999999999999999999999986 3 37899999999999999999999
Q ss_pred cCcchhhhhhhhhccccccCCchhhhhhhhhhhhhhccccccccccCCCcceEEEEEEEecCCceeecCCccccccCCCc
Q psy4929 81 TGKEQVVHRFQHIESRWGYSGTSDRIRFSVDRRIFVVGFGLYGCIHGPTEYDVQMQLVRTANGKVIAGNRTSFACDGSTF 160 (633)
Q Consensus 81 TG~~~~~~rfq~la~~w~y~gl~d~i~f~vdk~I~i~gfglygs~~~~~~y~v~i~l~~~~~~~~l~~~~~~~~~d~~~~ 160 (633)
||++..
T Consensus 88 t~~i~~-------------------------------------------------------------------------- 93 (557)
T PHA02713 88 NRHISS-------------------------------------------------------------------------- 93 (557)
T ss_pred CCCCCH--------------------------------------------------------------------------
Confidence 986320
Q ss_pred ceeeecccceeecCCcEEEEeeeeeeeeccccccccccccccCCccccchhhhhhhhccCCccCcchhhhhccCCCccch
Q psy4929 161 TSRVMFKEPVEVMPNISYTACATLKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKDLAVDPSFEFAKRRNVPLKYD 240 (633)
Q Consensus 161 ~~rv~f~~p~~~~~~~~y~~~a~~~~~~f~~~~c~k~~~~~~~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~ 240 (633)
T Consensus 94 -------------------------------------------------------------------------------- 93 (557)
T PHA02713 94 -------------------------------------------------------------------------------- 93 (557)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhhhhhhhccccccchhhHHHHHhhhhhhhhhhhhhhhhhheeeeecCcchhhhhhhhhhhhccceeeeceeee
Q psy4929 241 REFWNKTVEAIKKVEHIKTKRHNLYLAQRLRKAREVETARDIKAVQRDIAILNDPTEVIRAKKKKMVEAGIVEEIHEMQI 320 (633)
Q Consensus 241 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 320 (633)
T Consensus 94 -------------------------------------------------------------------------------- 93 (557)
T PHA02713 94 -------------------------------------------------------------------------------- 93 (557)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCcchHHHHHHhhccCchHHHHHHHHhhhhcCchhhhhcccccccccccccCCCCCCCCCCCchhhhcccccCCCC
Q psy4929 321 RESNLLHGKQILLTTARLFDEPQLAALCLDTIDKNTPDALAADGFTDKVVTLSSFSSSDGRKPSAPDSRCRSRLSANPGI 400 (633)
Q Consensus 321 ~~~~~~~~~~~lL~~Ad~f~~~~l~~~C~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~c~~~L~~~~~~ 400 (633)
+|+ +.+|.+|++|+++.+.+.|++||.+++
T Consensus 94 --~nv----~~ll~aA~~lqi~~l~~~C~~~l~~~l-------------------------------------------- 123 (557)
T PHA02713 94 --MNV----IDVLKCADYLLIDDLVTDCESYIKDYT-------------------------------------------- 123 (557)
T ss_pred --HHH----HHHHHHHHHHCHHHHHHHHHHHHHhhC--------------------------------------------
Confidence 011 228999999999999999999999988
Q ss_pred CCCcchhcHHHHHHHHhhcCChHHHHHHHHHHHhchHHHhcCCCCcccCHHHHHhhhcCCC-cccc-HHHHHHHHHHHHh
Q psy4929 401 EPSAWQANLTYHCAPARLFDEPQLAALCLDTIDKNTPDALAADGFTDVDRDTLCAVLERDT-LRIR-EAKLFQAVIRWSE 478 (633)
Q Consensus 401 ~~~l~~~Nc~~il~~A~~~~~~~L~~~c~~fI~~nf~~v~~seeFl~Ls~~~L~~iL~sD~-L~v~-E~~Vf~AvlrW~~ 478 (633)
+++||++++.+|..+.+.+|.+.|.+||.+||.+|+++++|++|+.++|..||++|+ |+|. |++||+||++|++
T Consensus 124 ----~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~ 199 (557)
T PHA02713 124 ----NHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKWLE 199 (557)
T ss_pred ----CccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHh
Confidence 458999999999999999999999999999999999999999999999999999988 7998 9999999999999
Q ss_pred hhhcccCCCCChhhHHhhHHhhhhcCCCCCCCHHHHhcCCCCCCCCCch-HHHHH
Q psy4929 479 AECTRQSLPITPENQRAVLGPSLTLVRFPLMSVEEFAAGPAQSGLLEDS-QLVRL 532 (633)
Q Consensus 479 ~ec~r~~~~~d~~~R~~~l~~LL~~VRfplms~~~L~~~v~~~~ll~~~-~~~~~ 532 (633)
| |+++|+ .+.+||++||||+|++.++. .+...++++.+ .|.++
T Consensus 200 ~---------d~~~r~-~~~~ll~~VR~~~l~~~~~~-~~~~~~~i~~~~~c~~~ 243 (557)
T PHA02713 200 Y---------NYITEE-QLLCILSCIDIQNLDKKSRL-LLYSNKTINMYPSCIQF 243 (557)
T ss_pred c---------CHHHHH-HHhhhHhhhhHhhcchhhhh-hhcchHHHHhhHHHHHH
Confidence 9 455554 46799999999999999986 56666666543 45554
No 4
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=1.7e-33 Score=317.85 Aligned_cols=145 Identities=17% Similarity=0.245 Sum_probs=132.3
Q ss_pred HHHHhhccCchHHHHHHHHhhhhcCchhhhhcccccccccccccCCCCCCCCCCCchhhhcccccCCCCCCCcchhcHHH
Q psy4929 332 LLTTARLFDEPQLAALCLDTIDKNTPDALAADGFTDKVVTLSSFSSSDGRKPSAPDSRCRSRLSANPGIEPSAWQANLTY 411 (633)
Q Consensus 332 lL~~Ad~f~~~~l~~~C~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~c~~~L~~~~~~~~~l~~~Nc~~ 411 (633)
+|.+|++|+++.|.+.|+++|.+.+ +.+||+.
T Consensus 81 ll~~A~~l~~~~l~~~C~~~l~~~l------------------------------------------------~~~nc~~ 112 (534)
T PHA03098 81 ILSIANYLIIDFLINLCINYIIKII------------------------------------------------DDNNCID 112 (534)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC------------------------------------------------CHhHHHH
Confidence 8999999999999999999999887 4489999
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhchHHHhcCCCCcccCHHHHHhhhcCCCcccc-HHHHHHHHHHHHhhhhcccCCCCCh
Q psy4929 412 HCAPARLFDEPQLAALCLDTIDKNTPDALAADGFTDVDRDTLCAVLERDTLRIR-EAKLFQAVIRWSEAECTRQSLPITP 490 (633)
Q Consensus 412 il~~A~~~~~~~L~~~c~~fI~~nf~~v~~seeFl~Ls~~~L~~iL~sD~L~v~-E~~Vf~AvlrW~~~ec~r~~~~~d~ 490 (633)
++.+|+.|++++|.+.|.+||.+||.++.++++|++|+.+.|..||++|+|+|. |++||+||++|++| +.
T Consensus 113 ~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~~~l~~ll~~~~L~v~~E~~v~~av~~W~~~---------~~ 183 (534)
T PHA03098 113 IYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSKNELIKILSDDKLNVSSEDVVLEIIIKWLTS---------KK 183 (534)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCHHHHHHHhcCCCcCcCCHHHHHHHHHHHHhc---------Ch
Confidence 999999999999999999999999999999999999999999999999999998 99999999999999 47
Q ss_pred hhHHhhHHhhhhcCCCCCCCHHHHhcCCC------CCCCCCchHHHHHH
Q psy4929 491 ENQRAVLGPSLTLVRFPLMSVEEFAAGPA------QSGLLEDSQLVRLF 533 (633)
Q Consensus 491 ~~R~~~l~~LL~~VRfplms~~~L~~~v~------~~~ll~~~~~~~~~ 533 (633)
++|++++++||++||||+|++++|.+.+. ...++.+..|..++
T Consensus 184 ~~r~~~~~~ll~~vR~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (534)
T PHA03098 184 NNKYKDICLILKVLRITFLSEEGIKKLKRWKLRIKKKKIVFNKRCIKII 232 (534)
T ss_pred hhhHhHHHHHHhhccccccCHHHHHHHHHHHhhcCCcceeccccchHHH
Confidence 89999999999999999999999987654 45555444455543
No 5
>PHA02790 Kelch-like protein; Provisional
Probab=99.98 E-value=2.4e-32 Score=304.90 Aligned_cols=124 Identities=19% Similarity=0.176 Sum_probs=113.2
Q ss_pred HHHHhhccCchHHHHHHHHhhhhcCchhhhhcccccccccccccCCCCCCCCCCCchhhhcccccCCCCCCCcchhcHHH
Q psy4929 332 LLTTARLFDEPQLAALCLDTIDKNTPDALAADGFTDKVVTLSSFSSSDGRKPSAPDSRCRSRLSANPGIEPSAWQANLTY 411 (633)
Q Consensus 332 lL~~Ad~f~~~~l~~~C~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~c~~~L~~~~~~~~~l~~~Nc~~ 411 (633)
+|.+|++||++.+.+.|++||.+++ +++||++
T Consensus 96 ll~aA~~Lqi~~v~~~C~~fL~~~l------------------------------------------------~~~NCl~ 127 (480)
T PHA02790 96 LLRASILTSVEFIIYTCINFILRDF------------------------------------------------RKEYCVE 127 (480)
T ss_pred HHHHHHHhChHHHHHHHHHHHHhhC------------------------------------------------CcchHHH
Confidence 9999999999999999999999998 5589999
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhchHHHhcC--CCCcccCHHHHHhhhcCCCcccc-HHHHHHHHHHHHhhhhcccCCCC
Q psy4929 412 HCAPARLFDEPQLAALCLDTIDKNTPDALAA--DGFTDVDRDTLCAVLERDTLRIR-EAKLFQAVIRWSEAECTRQSLPI 488 (633)
Q Consensus 412 il~~A~~~~~~~L~~~c~~fI~~nf~~v~~s--eeFl~Ls~~~L~~iL~sD~L~v~-E~~Vf~AvlrW~~~ec~r~~~~~ 488 (633)
|+.+|+.|+|++|.+.|.+||.+||.+|.++ ++|++||. ..||++|+|+|. |++||+||++|++|+
T Consensus 128 i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~~---~~lLssd~L~v~~Ee~V~eav~~Wl~~~-------- 196 (480)
T PHA02790 128 CYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLSM---KLILESDELNVPDEDYVVDFVIKWYMKR-------- 196 (480)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCCH---HHhcccccCCCccHHHHHHHHHHHHHhh--------
Confidence 9999999999999999999999999999987 89999996 689999999998 999999999999983
Q ss_pred ChhhHHhhHHhhhhc-CCCCCCCHHHHhc
Q psy4929 489 TPENQRAVLGPSLTL-VRFPLMSVEEFAA 516 (633)
Q Consensus 489 d~~~R~~~l~~LL~~-VRfplms~~~L~~ 516 (633)
..|...+.+++++ ||+++|++.++.+
T Consensus 197 --~~~~~~l~~~vr~~ir~~~l~~~~l~~ 223 (480)
T PHA02790 197 --RNRLGNLLLLIKNVIRSNYLSPRGINN 223 (480)
T ss_pred --HHHHHHHHHHHHhcCChhhCCHHHHHH
Confidence 4566677777777 9999999988853
No 6
>KOG4350|consensus
Probab=99.97 E-value=2e-31 Score=275.61 Aligned_cols=234 Identities=29% Similarity=0.442 Sum_probs=210.2
Q ss_pred cHHHHHHHHHhCCCcccEEEEeCCCccceEEEeEEeEeeccChhhhhhhcCCCC-CCCCeEEcCCCCHhhhhhhheeccc
Q psy4929 3 LVKERFAFMFNNEILCDVHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLA-TRSDEIELPDVEPAAFLALLRCSMT 81 (633)
Q Consensus 3 tl~~~l~~l~~~~~~sDV~f~v~~~~~~~~f~aHk~VLaa~S~yF~amf~~~~~-~~~~~I~l~dv~~~~f~~lL~ylYT 81 (633)
.++++|.+++-+.+++||+|+|++ .+|||||+||||||.||+||+.|+|. +.+..|.|.+-+.++|+++|+||||
T Consensus 30 ~fS~~~~~l~~~e~y~DVtfvve~----~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYt 105 (620)
T KOG4350|consen 30 NFSQSFDELFTSEDYSDVTFVVED----TRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYT 105 (620)
T ss_pred chhHHHHHHhhcCcccceEEEEec----cccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhh
Confidence 357899999999999999999999 89999999999999999999999995 7788999999999999999999999
Q ss_pred CcchhhhhhhhhccccccCCchhhhhhhhhhhhhhccccccccccCCCcceEEEEEEEecCCceeecCCccccccCCCcc
Q psy4929 82 GKEQVVHRFQHIESRWGYSGTSDRIRFSVDRRIFVVGFGLYGCIHGPTEYDVQMQLVRTANGKVIAGNRTSFACDGSTFT 161 (633)
Q Consensus 82 G~~~~~~rfq~la~~w~y~gl~d~i~f~vdk~I~i~gfglygs~~~~~~y~v~i~l~~~~~~~~l~~~~~~~~~d~~~~~ 161 (633)
|++.+. |+
T Consensus 106 g~~~l~------------------------------~~------------------------------------------ 113 (620)
T KOG4350|consen 106 GKIDLA------------------------------GV------------------------------------------ 113 (620)
T ss_pred cceecc------------------------------cc------------------------------------------
Confidence 998721 00
Q ss_pred eeeecccceeecCCcEEEEeeeeeeeeccccccccccccccCCccccchhhhhhhhccCCccCcchhhhhccCCCccchh
Q psy4929 162 SRVMFKEPVEVMPNISYTACATLKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKDLAVDPSFEFAKRRNVPLKYDR 241 (633)
Q Consensus 162 ~rv~f~~p~~~~~~~~y~~~a~~~~~~f~~~~c~k~~~~~~~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~r 241 (633)
+
T Consensus 114 -----------------------~-------------------------------------------------------- 114 (620)
T KOG4350|consen 114 -----------------------E-------------------------------------------------------- 114 (620)
T ss_pred -----------------------h--------------------------------------------------------
Confidence 0
Q ss_pred hhhhhhhhhhhhhccccccchhhHHHHHhhhhhhhhhhhhhhhhhheeeeecCcchhhhhhhhhhhhccceeeeceeeec
Q psy4929 242 EFWNKTVEAIKKVEHIKTKRHNLYLAQRLRKAREVETARDIKAVQRDIAILNDPTEVIRAKKKKMVEAGIVEEIHEMQIR 321 (633)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 321 (633)
T Consensus 115 -------------------------------------------------------------------------------- 114 (620)
T KOG4350|consen 115 -------------------------------------------------------------------------------- 114 (620)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCcchHHHHHHhhccCchHHHHHHHHhhhhcCchhhhhcccccccccccccCCCCCCCCCCCchhhhcccccCCCCC
Q psy4929 322 ESNLLHGKQILLTTARLFDEPQLAALCLDTIDKNTPDALAADGFTDKVVTLSSFSSSDGRKPSAPDSRCRSRLSANPGIE 401 (633)
Q Consensus 322 ~~~~~~~~~~lL~~Ad~f~~~~l~~~C~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~c~~~L~~~~~~~ 401 (633)
++.+++ .|.+|++|+.++|...-.+++.+.+
T Consensus 115 ed~lld----~LslAh~Ygf~~Le~aiSeYl~~iL--------------------------------------------- 145 (620)
T KOG4350|consen 115 EDILLD----YLSLAHRYGFIQLETAISEYLKEIL--------------------------------------------- 145 (620)
T ss_pred HHHHHH----HHHHHHhcCcHHHHHHHHHHHHHHH---------------------------------------------
Confidence 001122 7999999999999999999998887
Q ss_pred CCcchhcHHHHHHHHhhcCChHHHHHHHHHHHhchHHHhcCCCCcccCHHHHHhhhcCCCccccHHHHHHHHHHHHhhhh
Q psy4929 402 PSAWQANLTYHCAPARLFDEPQLAALCLDTIDKNTPDALAADGFTDVDRDTLCAVLERDTLRIREAKLFQAVIRWSEAEC 481 (633)
Q Consensus 402 ~~l~~~Nc~~il~~A~~~~~~~L~~~c~~fI~~nf~~v~~seeFl~Ls~~~L~~iL~sD~L~v~E~~Vf~AvlrW~~~ec 481 (633)
..+|+|+++..|.+|+.++|.+.|..|+++|+.+++.+++|..|+.+.|.++|.+|..-..|.++|.||.+|.+++
T Consensus 146 ---~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~~sFn~LSk~sL~e~l~RDsFfApE~~IFlAv~~W~~~N- 221 (620)
T KOG4350|consen 146 ---KNENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLEDPSFNRLSKDSLKELLARDSFFAPELKIFLAVRSWHQNN- 221 (620)
T ss_pred ---cccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcCcchhhhhHHHHHHHHhhhcccchHHHHHHHHHHHHhcC-
Confidence 2279999999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred cccCCCCChhhHHhhHHhhhhcCCCCCCCHHHHhcCCCCCCCCCchHHHHHHhh
Q psy4929 482 TRQSLPITPENQRAVLGPSLTLVRFPLMSVEEFAAGPAQSGLLEDSQLVRLFLY 535 (633)
Q Consensus 482 ~r~~~~~d~~~R~~~l~~LL~~VRfplms~~~L~~~v~~~~ll~~~~~~~~~~y 535 (633)
-++.-..+|+.||+|||+..+|.+.|.++||+..+.++++..-
T Consensus 222 -----------ske~~k~~~~~VRLPLm~lteLLnvVRPsGllspD~iLDAI~v 264 (620)
T KOG4350|consen 222 -----------SKEASKVLLELVRLPLMTLTELLNVVRPSGLLSPDTILDAIEV 264 (620)
T ss_pred -----------chhhHHHHHHHHhhhhccHHHHHhccCcccCcCHHHHHHHHHh
Confidence 2556678999999999999999999999999999988888654
No 7
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=99.76 E-value=3.5e-19 Score=157.05 Aligned_cols=102 Identities=32% Similarity=0.496 Sum_probs=92.9
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhchHHHhcCCCCcccCHHHHHhhhcCCCcccc-HHHHHHHHHHHHhhhhcccCCC
Q psy4929 409 LTYHCAPARLFDEPQLAALCLDTIDKNTPDALAADGFTDVDRDTLCAVLERDTLRIR-EAKLFQAVIRWSEAECTRQSLP 487 (633)
Q Consensus 409 c~~il~~A~~~~~~~L~~~c~~fI~~nf~~v~~seeFl~Ls~~~L~~iL~sD~L~v~-E~~Vf~AvlrW~~~ec~r~~~~ 487 (633)
|++++.+|..|++++|.+.|.+||.+||.+++++++|.+||.+.|..||++|+|++. |.+||+|+++|++++
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~------- 73 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHN------- 73 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCT-------
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhC-------
Confidence 899999999999999999999999999999999999999999999999999999987 999999999999994
Q ss_pred CChhhHHhhHHhhhhcCCCCCCCHHHHhcCCC
Q psy4929 488 ITPENQRAVLGPSLTLVRFPLMSVEEFAAGPA 519 (633)
Q Consensus 488 ~d~~~R~~~l~~LL~~VRfplms~~~L~~~v~ 519 (633)
+++|.+++.++|++||||+|++++|.+.++
T Consensus 74 --~~~r~~~~~~Ll~~iR~~~l~~~~L~~~v~ 103 (103)
T PF07707_consen 74 --PENREEHLKELLSCIRFPLLSPEELQNVVE 103 (103)
T ss_dssp --HHHHTTTHHHHHCCCHHHCT-HHHHHHCCT
T ss_pred --HHHHHHHHHHHHHhCCcccCCHHHHHHHHC
Confidence 778999999999999999999999988763
No 8
>PF08005 PHR: PHR domain ; InterPro: IPR012983 This domain is called PHR as it was original found in the proteins PAM (O75592 from SWISSPROT), highwire (Q9NB71 from SWISSPROT) and RPM (Q17551 from SWISSPROT). This domain can be duplicated in the highwire, PAM and PRM sequences. The function of PHR is currently unclear.; PDB: 3NO8_A 3GBW_A 3HWJ_A.
Probab=99.73 E-value=9.8e-19 Score=166.14 Aligned_cols=96 Identities=57% Similarity=0.940 Sum_probs=85.6
Q ss_pred hhhhhh-ccccccCCc-hhhhhhhhhhhhhhccccccccccCCCcceEEEEEE-------EecCCceeecCCccccccCC
Q psy4929 88 HRFQHI-ESRWGYSGT-SDRIRFSVDRRIFVVGFGLYGCIHGPTEYDVQMQLV-------RTANGKVIAGNRTSFACDGS 158 (633)
Q Consensus 88 ~rfq~l-a~~w~y~gl-~d~i~f~vdk~I~i~gfglygs~~~~~~y~v~i~l~-------~~~~~~~l~~~~~~~~~d~~ 158 (633)
+||++. .++|+|+|. +|+|+|+||++|+++||||||+. ++|+++|+++ +...+++++++++.|.+|+.
T Consensus 1 ~RF~~~~~~~W~y~~~~~DaI~F~VDr~I~l~G~GlyG~~---~~y~~~iel~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 77 (152)
T PF08005_consen 1 NRFQSTSGSGWGYSGGSPDAIRFSVDRDIFLVGFGLYGGS---GEYTVEIELLDDGGSGAHEEDGEVLAENDTSFSSDGS 77 (152)
T ss_dssp ESECEE-CSEB--CCC--EEEEEEESSSEEEEEEEEE-BS---SEEEEEEEEEEEETTTTCTTTCEEEEEEEEEEEETTT
T ss_pred CccccccCCCcCcCCCCCcEEEEEeCCCEEEEEEEeeccc---cccEEEEEEEeccCCccccccceEeeEeeeeEeecCC
Confidence 489999 899999999 89999999999999999999965 9999999999 56788999999999999999
Q ss_pred CcceeeecccceeecCCcEEEEeeeeee
Q psy4929 159 TFTSRVMFKEPVEVMPNISYTACATLKI 186 (633)
Q Consensus 159 ~~~~rv~f~~p~~~~~~~~y~~~a~~~~ 186 (633)
..+++++|++||+|.||++|+|+|+++|
T Consensus 78 ~~~~~v~F~~PV~i~~n~~Y~~~a~~~G 105 (152)
T PF08005_consen 78 NDTFRVMFDEPVPIQPNVWYTASATING 105 (152)
T ss_dssp TSEEEEEEEEEEEE-TT-EEEEEEEEES
T ss_pred CCEEEEEcCCceEeCCCCEEEEEEEeCC
Confidence 9999999999999999999999999998
No 9
>KOG2075|consensus
Probab=99.73 E-value=2.1e-18 Score=183.73 Aligned_cols=103 Identities=53% Similarity=0.923 Sum_probs=97.7
Q ss_pred chhhhhhhhhccc--cccCCchhhhhhhhhhhhhhccccccccccCCCcceEEEEEEEecCCceeecCCccccccCCCcc
Q psy4929 84 EQVVHRFQHIESR--WGYSGTSDRIRFSVDRRIFVVGFGLYGCIHGPTEYDVQMQLVRTANGKVIAGNRTSFACDGSTFT 161 (633)
Q Consensus 84 ~~~~~rfq~la~~--w~y~gl~d~i~f~vdk~I~i~gfglygs~~~~~~y~v~i~l~~~~~~~~l~~~~~~~~~d~~~~~ 161 (633)
.+..++||+..++ |+|+|++|+|+|.+|++|.|+|||+||+++|+.+|+++|++++.+ ..++|+++.|.|||+.++
T Consensus 374 ~~~~~rfqr~~~R~q~~~~g~~D~i~F~vd~ri~IagfGlygs~~g~~ey~~~i~l~~~~--~~lge~~t~~~cdGs~~~ 451 (521)
T KOG2075|consen 374 KLVRARFQRSETRQQWRYRGTSDRITFQVDRRIFIAGFGLYGSSTGPTEYQTKILLIHIQ--DTLGENDTYFHCDGSSST 451 (521)
T ss_pred ccchhhhhcchhhhhhccccccccceeeeeeeEEEEeccccccccccchheeEEEEEecc--cccccceeEEEecCcccc
Confidence 3446899999988 999999999999999999999999999999999999999999874 899999999999999999
Q ss_pred eeeecccceeecCCcEEEEeeeeeeee
Q psy4929 162 SRVMFKEPVEVMPNISYTACATLKIFR 188 (633)
Q Consensus 162 ~rv~f~~p~~~~~~~~y~~~a~~~~~~ 188 (633)
|||||++||+|+||++|++++.++|-.
T Consensus 452 ~~v~F~ePv~I~p~~~yta~~i~~g~d 478 (521)
T KOG2075|consen 452 FRVMFDEPVEILPNQIYTAYVILRGID 478 (521)
T ss_pred cccccCCcceecCCceEEEEEEecCcc
Confidence 999999999999999999999999876
No 10
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=99.69 E-value=8.8e-17 Score=140.43 Aligned_cols=98 Identities=30% Similarity=0.431 Sum_probs=91.3
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhchHHHhcCCCCcccCHHHHHhhhcCCCcccc-HHHHHHHHHHHHhhhhcccCCC
Q psy4929 409 LTYHCAPARLFDEPQLAALCLDTIDKNTPDALAADGFTDVDRDTLCAVLERDTLRIR-EAKLFQAVIRWSEAECTRQSLP 487 (633)
Q Consensus 409 c~~il~~A~~~~~~~L~~~c~~fI~~nf~~v~~seeFl~Ls~~~L~~iL~sD~L~v~-E~~Vf~AvlrW~~~ec~r~~~~ 487 (633)
|+.++.+|+.|++++|.+.|.+||.+||..+.++++|..||.+.+..+|++|+|+|. |..+|+|+++|++++
T Consensus 1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~------- 73 (101)
T smart00875 1 CLGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHD------- 73 (101)
T ss_pred CHhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCC-------
Confidence 788999999999999999999999999999999999999999999999999999986 999999999999995
Q ss_pred CChhhHHhhHHhhhhcCCCCCCCHHHHhc
Q psy4929 488 ITPENQRAVLGPSLTLVRFPLMSVEEFAA 516 (633)
Q Consensus 488 ~d~~~R~~~l~~LL~~VRfplms~~~L~~ 516 (633)
...| +.+..++++||||+|++++|.+
T Consensus 74 --~~~~-~~~~~ll~~ir~~~~~~~~l~~ 99 (101)
T smart00875 74 --PERR-RHLPELLSHVRFPLLSPEYLLE 99 (101)
T ss_pred --HHHH-HHHHHHHHhCCCCCCCHHHHHh
Confidence 3444 4899999999999999998865
No 11
>KOG0783|consensus
Probab=99.49 E-value=8.1e-14 Score=155.47 Aligned_cols=75 Identities=25% Similarity=0.410 Sum_probs=60.9
Q ss_pred HHHHHHHHhCC----CcccEEEEeCCCccceEEEeEEeEeeccChhhhhhhcCCCC-------------CCCCeEEcCCC
Q psy4929 5 KERFAFMFNNE----ILCDVHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLA-------------TRSDEIELPDV 67 (633)
Q Consensus 5 ~~~l~~l~~~~----~~sDV~f~v~~~~~~~~f~aHk~VLaa~S~yF~amf~~~~~-------------~~~~~I~l~dv 67 (633)
-..+..|+... .+.||+|.||+ +.|+|||+||++||++|+.+|..... .....|.+.++
T Consensus 542 e~sf~kLl~e~~~~ds~hDVtf~vg~----~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i 617 (1267)
T KOG0783|consen 542 EGSFPKLLSEENYKDSFHDVTFYVGT----SMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDI 617 (1267)
T ss_pred hhhhHHHhhccccccccceEEEEecC----eecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccC
Confidence 34455555543 46799999999 89999999999999999999976432 23456778899
Q ss_pred CHhhhhhhheecccCc
Q psy4929 68 EPAAFLALLRCSMTGK 83 (633)
Q Consensus 68 ~~~~f~~lL~ylYTG~ 83 (633)
.|.+|+.+|+|+||+.
T Consensus 618 ~p~mfe~lL~~iYtdt 633 (1267)
T KOG0783|consen 618 PPLMFEILLHYIYTDT 633 (1267)
T ss_pred CHHHHHHHHHHHhccc
Confidence 9999999999999983
No 12
>KOG1723|consensus
Probab=99.37 E-value=2e-13 Score=128.07 Aligned_cols=125 Identities=50% Similarity=0.893 Sum_probs=117.2
Q ss_pred CcEEEEeeeeeeeeccccccccccccccCCccccchhhhhhhhccCCccCcchhhhhccCCCccchhhhhhhhhhhhhhh
Q psy4929 175 NISYTACATLKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKV 254 (633)
Q Consensus 175 ~~~y~~~a~~~~~~f~~~~c~k~~~~~~~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 254 (633)
|+.|+- =+.+-|.|+-+.|||+|+.+++|+++.||+++|.-.++-+.+|.+++++.+||+|.+|+|++++.|..|+..+
T Consensus 18 gi~Fv~-Nd~k~f~Fc~skc~k~f~~k~nPrk~~~tka~rKaagre~~~d~~~e~~~rrn~~~~y~r~~~~~Ti~a~k~v 96 (162)
T KOG1723|consen 18 GIMFVR-NDCKVFRFCKSKCHKNFKQKKNPRKVGWTKAFRKAAGRELVTDSTFEFEKRRNVPRKYDRELINKTIDAMKRV 96 (162)
T ss_pred ceEEEe-cCcchhHHHHhhhhhhhhhhcCCCccchHHHHHHHhhhhHhhhhhHHHHHhcCcchhhcccchhhHHHHHHHH
Confidence 345543 4478899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhHHHHHhhhhhhhhhhhhhhhhhheeeeecCcchhhh
Q psy4929 255 EHIKTKRHNLYLAQRLRKAREVETARDIKAVQRDIAILNDPTEVIR 300 (633)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (633)
..+.+.|++.+++.||.|.++++..++++.+.+.+++|.+|+....
T Consensus 97 ~~i~~~~~~~~i~~rL~~~ke~~~~~d~k~v~~n~~li~~~~~~~~ 142 (162)
T KOG1723|consen 97 LEIKQKREAHFIGNRLKKGKEAQLVQDIKEVKQNIHLIRAPEAGKE 142 (162)
T ss_pred HhhcccchhhhhhhccCccchhccchhHHHHHhhhhhhcchhhhhh
Confidence 9999999999999999999999999999999999999999977665
No 13
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.32 E-value=3.9e-13 Score=119.61 Aligned_cols=98 Identities=27% Similarity=0.440 Sum_probs=80.0
Q ss_pred HHHHHhCCCcccEEEEeCCCccceEEEeEEeEeeccChhhhhhhcCC-CC-CCCCeEEcCCCCHhhhhhhheecccCcch
Q psy4929 8 FAFMFNNEILCDVHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGT-LA-TRSDEIELPDVEPAAFLALLRCSMTGKEQ 85 (633)
Q Consensus 8 l~~l~~~~~~sDV~f~v~~~~~~~~f~aHk~VLaa~S~yF~amf~~~-~~-~~~~~I~l~dv~~~~f~~lL~ylYTG~~~ 85 (633)
|+++++++.++|++|.++++ +.|+|||.||+++|+||+.||.+. +. ....+|.++++++++|+.+++|+|+|+..
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~---~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~ 77 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDG---KTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIE 77 (111)
T ss_dssp HHHHHHHTTS--EEEEETTT---EEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEE
T ss_pred ChHHHcCCCCCCEEEEECCC---EEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCccc
Confidence 57889999999999999942 899999999999999999999997 43 33347889999999999999999999765
Q ss_pred h-----hhhhhhhccccccCCchhhhhh
Q psy4929 86 V-----VHRFQHIESRWGYSGTSDRIRF 108 (633)
Q Consensus 86 ~-----~~rfq~la~~w~y~gl~d~i~f 108 (633)
+ ...+..+|..|+...+.+.|.-
T Consensus 78 ~~~~~~~~~ll~lA~~~~~~~L~~~~~~ 105 (111)
T PF00651_consen 78 INSDENVEELLELADKLQIPELKKACEK 105 (111)
T ss_dssp EE-TTTHHHHHHHHHHTTBHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 5 3467778888988888776654
No 14
>KOG2838|consensus
Probab=99.25 E-value=3.3e-13 Score=134.86 Aligned_cols=259 Identities=19% Similarity=0.234 Sum_probs=153.9
Q ss_pred cHHHHHHHHHhCCCcccEEEEeCCCccceEEEeEEeEeeccChhhhhhhcCCCC---CCCCeEEcCCCCHhhhhhhheec
Q psy4929 3 LVKERFAFMFNNEILCDVHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLA---TRSDEIELPDVEPAAFLALLRCS 79 (633)
Q Consensus 3 tl~~~l~~l~~~~~~sDV~f~v~~~~~~~~f~aHk~VLaa~S~yF~amf~~~~~---~~~~~I~l~dv~~~~f~~lL~yl 79 (633)
|+..+|...++.....|+.++... ..|||||++||+||++|+...+++.+ ...-.|..-+++.++|+++|.|+
T Consensus 116 sf~kD~ad~ye~k~c~dldiiFke----TcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l 191 (401)
T KOG2838|consen 116 SFLKDFADGYERKVCGDLDIIFKE----TCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSL 191 (401)
T ss_pred HHHHHHhhhhheeeeccceeeeee----ccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHH
Confidence 678899999999889999999998 89999999999999999999887654 22234556699999999999999
Q ss_pred ccCcchh-hhhhhhhccccccCCchhh--hhhhhhhhhhhccccccccccCCCcceEEEEEEEecCCceeecCCcccccc
Q psy4929 80 MTGKEQV-VHRFQHIESRWGYSGTSDR--IRFSVDRRIFVVGFGLYGCIHGPTEYDVQMQLVRTANGKVIAGNRTSFACD 156 (633)
Q Consensus 80 YTG~~~~-~~rfq~la~~w~y~gl~d~--i~f~vdk~I~i~gfglygs~~~~~~y~v~i~l~~~~~~~~l~~~~~~~~~d 156 (633)
|||+--. ..+||+..- +..+|+. |....+.++ =|+|.-.++-++ .++...+|+.+-.-.+...|
T Consensus 192 ~tgEfgmEd~~fqn~di---L~QL~edFG~~kkLd~Dm----kglfd~~c~~d~-----li~~ssD~elveafggeeNc- 258 (401)
T KOG2838|consen 192 ITGEFGMEDLGFQNSDI---LEQLCEDFGCFKKLDEDM----KGLFDQDCKHDD-----LIIESSDGELVEAFGGEENC- 258 (401)
T ss_pred HhcccchhhcCCchHHH---HHHHHHhhCCchhhhHHH----HHHHHhhcccCc-----EEEEeccchhhhhcCCcccc-
Confidence 9998644 456665431 0011110 000111111 133332222222 11111122211111111111
Q ss_pred CCCcceeeecccceeecCCcEEEEeeeeeeeeccccccccccccccCCccccchhhhhhhhccCCccCcchhhhhccCCC
Q psy4929 157 GSTFTSRVMFKEPVEVMPNISYTACATLKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKDLAVDPSFEFAKRRNVP 236 (633)
Q Consensus 157 ~~~~~~rv~f~~p~~~~~~~~y~~~a~~~~~~f~~~~c~k~~~~~~~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~ 236 (633)
.+++- +|||+...+|+ +.||+|..+.+
T Consensus 259 ----------------------------~deei---kahkai~aaRS-------~ffRnLL~Rki--------------- 285 (401)
T KOG2838|consen 259 ----------------------------EDEEI---KAHKAIAAARS-------KFFRNLLLRKI--------------- 285 (401)
T ss_pred ----------------------------hhHHH---HHHHHHHHhhh-------HHHHHHHHHHh---------------
Confidence 12222 69999999988 56666665544
Q ss_pred ccchhhhhhhhhhhhhhh---ccccccchhhHHHHHhhhhhhhhhhhhhhhhhheeeee--cCcchhhhhhhhhhhhccc
Q psy4929 237 LKYDREFWNKTVEAIKKV---EHIKTKRHNLYLAQRLRKAREVETARDIKAVQRDIAIL--NDPTEVIRAKKKKMVEAGI 311 (633)
Q Consensus 237 ~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 311 (633)
|...+..++|++.+++| +.|.++..+.++.++|+- +.-++.+. ..|.+...
T Consensus 286 -regeE~sdrtlr~PkRIifdE~I~PkafA~i~lhclYT------------D~lDlSl~hkce~SigSL----------- 341 (401)
T KOG2838|consen 286 -REGEEGSDRTLRRPKRIIFDELIFPKAFAPIFLHCLYT------------DRLDLSLAHKCEDSIGSL----------- 341 (401)
T ss_pred -hcccccccccccCCceeechhhhcchhhhhhhhhhhee------------cccchhhcccCCcccccH-----------
Confidence 34445566666666666 778888888888887771 01111111 12222222
Q ss_pred eeeeceee-eccccc--CcchHHHHHHhhccCchHHHHHHHHhhhhcC
Q psy4929 312 VEEIHEMQ-IRESNL--LHGKQILLTTARLFDEPQLAALCLDTIDKNT 356 (633)
Q Consensus 312 ~~~~~~~~-l~~~~~--~~~~~~lL~~Ad~f~~~~l~~~C~~~L~~~l 356 (633)
.+..++. -..+|. ...+..|...|.+|.+..|++.|.+.+.+..
T Consensus 342 -SeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa~e~Vir~ac 388 (401)
T KOG2838|consen 342 -SEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQACEDVIRKAC 388 (401)
T ss_pred -HHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 2222221 111221 1222348899999999999999999998887
No 15
>KOG4591|consensus
Probab=99.23 E-value=1.2e-11 Score=118.95 Aligned_cols=83 Identities=17% Similarity=0.131 Sum_probs=73.2
Q ss_pred HHHHhhccCchHHHHHHHHhhhhcCchhhhhcccccccccccccCCCCCCCCCCCchhhhcccccCCCCCCCcchhcHHH
Q psy4929 332 LLTTARLFDEPQLAALCLDTIDKNTPDALAADGFTDKVVTLSSFSSSDGRKPSAPDSRCRSRLSANPGIEPSAWQANLTY 411 (633)
Q Consensus 332 lL~~Ad~f~~~~l~~~C~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~c~~~L~~~~~~~~~l~~~Nc~~ 411 (633)
+..+|.+|++..|.+.|.+.+...+ .++||+.
T Consensus 142 l~e~An~FqLe~Lke~C~k~l~a~l------------------------------------------------~V~NCIk 173 (280)
T KOG4591|consen 142 LCELANRFQLELLKERCEKGLGALL------------------------------------------------HVDNCIK 173 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHh------------------------------------------------hHhhHHH
Confidence 6778999999999999998777665 5689999
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhchHHHhcCCCCcccCHHHHHhhhcCCCcc
Q psy4929 412 HCAPARLFDEPQLAALCLDTIDKNTPDALAADGFTDVDRDTLCAVLERDTLR 463 (633)
Q Consensus 412 il~~A~~~~~~~L~~~c~~fI~~nf~~v~~seeFl~Ls~~~L~~iL~sD~L~ 463 (633)
++.+|+..+..+|...|-+.|..+-..+-. ++|.+++...|-.++.+++=+
T Consensus 174 ~Ye~AEe~n~~qL~n~~~eiIA~~W~dL~~-a~FaqMs~aLLYklId~kTe~ 224 (280)
T KOG4591|consen 174 FYEFAEELNARQLMNVAAEIIAGAWDDLGK-ADFAQMSAALLYKLIDGKTEN 224 (280)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhccccCh-HHHHhccHHHHHHHHcCCCcc
Confidence 999999999999999999999988776544 799999999999999988754
No 16
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.13 E-value=2.3e-11 Score=102.40 Aligned_cols=84 Identities=32% Similarity=0.502 Sum_probs=70.6
Q ss_pred cEEEEeCCCccceEEEeEEeEeeccChhhhhhhcCCCC-CCCCeEEcCCCCHhhhhhhheecccCcchhh----hhhhhh
Q psy4929 19 DVHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLA-TRSDEIELPDVEPAAFLALLRCSMTGKEQVV----HRFQHI 93 (633)
Q Consensus 19 DV~f~v~~~~~~~~f~aHk~VLaa~S~yF~amf~~~~~-~~~~~I~l~dv~~~~f~~lL~ylYTG~~~~~----~rfq~l 93 (633)
|+++.+++ +.|++||.+|+++|+||++||.+++. +....|.++++++++|+.+|+|+|+|++.+. ..+..+
T Consensus 1 dv~i~v~~----~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~ 76 (90)
T smart00225 1 DVTLVVGG----KKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEELLEL 76 (90)
T ss_pred CeEEEECC----EEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHHHHHH
Confidence 78999999 89999999999999999999998764 3578999999999999999999999988663 345566
Q ss_pred ccccccCCchhhh
Q psy4929 94 ESRWGYSGTSDRI 106 (633)
Q Consensus 94 a~~w~y~gl~d~i 106 (633)
+..|+..++.+.|
T Consensus 77 a~~~~~~~l~~~c 89 (90)
T smart00225 77 ADYLQIPGLVELC 89 (90)
T ss_pred HHHHCcHHHHhhh
Confidence 6777776655444
No 17
>KOG1428|consensus
Probab=99.09 E-value=2e-11 Score=140.86 Aligned_cols=108 Identities=36% Similarity=0.610 Sum_probs=94.3
Q ss_pred hhhhhhhhccccccCCch-hhhhhhhhhhhhhccccccccccCCCcceEEEEEEEe-------cCCceeecC-Ccccccc
Q psy4929 86 VVHRFQHIESRWGYSGTS-DRIRFSVDRRIFVVGFGLYGCIHGPTEYDVQMQLVRT-------ANGKVIAGN-RTSFACD 156 (633)
Q Consensus 86 ~~~rfq~la~~w~y~gl~-d~i~f~vdk~I~i~gfglygs~~~~~~y~v~i~l~~~-------~~~~~l~~~-~~~~~~d 156 (633)
+++||...++.|||+..+ +.|+|.+++.|.++|+|||| |+|+|.+|+++++. -.++.+.+. ++.|.|
T Consensus 1054 VaNRFd~~GGGWGYSA~SVEAIrFsvskeI~L~GvGLyG---GRGEY~sKlKLy~~~~~~~DE~~~e~itETD~~vYDC- 1129 (3738)
T KOG1428|consen 1054 VANRFDGTGGGWGYSAHSVEAIRFSVSKEIRLVGVGLYG---GRGEYISKLKLYRQIGTEADELYVEQITETDETVYDC- 1129 (3738)
T ss_pred eeeecccCCCCccccccchhheeeecccceEEEeeeecc---CcchhhhhhhhhhhcCCccchhhhHHhhccchhhccc-
Confidence 367999999999999995 99999999999999999999 99999999999961 134456666 677777
Q ss_pred CCCcceeeecccceeecCCcEEEEeeeeeeeecccccccccccc
Q psy4929 157 GSTFTSRVMFKEPVEVMPNISYTACATLKIFRFCRSKCHKLFKR 200 (633)
Q Consensus 157 ~~~~~~rv~f~~p~~~~~~~~y~~~a~~~~~~f~~~~c~k~~~~ 200 (633)
|...++.++|.+|+.|+||.||+|||.+.| .|+.|..+.+.
T Consensus 1130 ~A~Et~tllFsqPiviQ~~~W~Vv~AkiSG---PSSDCGa~Gk~ 1170 (3738)
T KOG1428|consen 1130 GAHETATLLFSQPIVIQPNHWHVVSAKISG---PSSDCGANGKR 1170 (3738)
T ss_pred chhhhhhhhcCCceEecCCceEEEEEEccC---CcccccccCce
Confidence 889999999999999999999999999998 78888866544
No 18
>KOG4682|consensus
Probab=99.03 E-value=8.9e-10 Score=115.94 Aligned_cols=110 Identities=15% Similarity=0.211 Sum_probs=98.4
Q ss_pred eeeecccccCcchHHHHHHhhccCchHHHHHHHHhhhhcCchhhhhcccccccccccccCCCCCCCCCCCchhhhccccc
Q psy4929 317 EMQIRESNLLHGKQILLTTARLFDEPQLAALCLDTIDKNTPDALAADGFTDKVVTLSSFSSSDGRKPSAPDSRCRSRLSA 396 (633)
Q Consensus 317 ~~~l~~~~~~~~~~~lL~~Ad~f~~~~l~~~C~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~c~~~L~~ 396 (633)
+++|..+.+.. +|.+|.++++..+.+.|.+.+...+
T Consensus 135 EveI~l~dv~g----vlAaA~~lqldgl~qrC~evMie~l---------------------------------------- 170 (488)
T KOG4682|consen 135 EVEIKLSDVVG----VLAAACLLQLDGLIQRCGEVMIETL---------------------------------------- 170 (488)
T ss_pred heeccHHHHHH----HHHHHHHHHHhhHHHHHHHHHHHhc----------------------------------------
Confidence 44444444444 8999999999999999999988887
Q ss_pred CCCCCCCcchhcHHHHHHHHhhcCChHHHHHHHHHHHhchHHHhcCCCCcccCHHHHHhhhcCCCcccc--HHHHHHHHH
Q psy4929 397 NPGIEPSAWQANLTYHCAPARLFDEPQLAALCLDTIDKNTPDALAADGFTDVDRDTLCAVLERDTLRIR--EAKLFQAVI 474 (633)
Q Consensus 397 ~~~~~~~l~~~Nc~~il~~A~~~~~~~L~~~c~~fI~~nf~~v~~seeFl~Ls~~~L~~iL~sD~L~v~--E~~Vf~Avl 474 (633)
.++|+|+.+..|..|+++.+.+.|.+++..|+..+....-+.+++.+.+..+|.|.+|-|- |..+|..+.
T Consensus 171 --------spkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~~q~l~ei~~~Lm~~ll~SpnLfvmq~EfdLyttlk 242 (488)
T KOG4682|consen 171 --------SPKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQNVQLLKEISINLMKQLLGSPNLFVMQVEFDLYTTLK 242 (488)
T ss_pred --------ChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhhHHHHHhcCHHHHHHHhCCCCeEEEEeeehHHHHHH
Confidence 4579999999999999999999999999999999999789999999999999999999884 999999999
Q ss_pred HHHh
Q psy4929 475 RWSE 478 (633)
Q Consensus 475 rW~~ 478 (633)
.|+-
T Consensus 243 ~Wmf 246 (488)
T KOG4682|consen 243 KWMF 246 (488)
T ss_pred HHHH
Confidence 9974
No 19
>PTZ00033 60S ribosomal protein L24; Provisional
Probab=98.72 E-value=6.1e-09 Score=93.56 Aligned_cols=70 Identities=33% Similarity=0.585 Sum_probs=62.8
Q ss_pred eeeeeeeccccccccccccccCCccccchhhhhhhhccCCccCcchhhhhccCCCccchhhhhhhhhhhhhhh
Q psy4929 182 ATLKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKV 254 (633)
Q Consensus 182 a~~~~~~f~~~~c~k~~~~~~~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 254 (633)
.+...|.|++++|+++|+.+++|+++.||..||+.+++.+ +|-+ +.++++.|.+|+|+++|.++++|...
T Consensus 28 ~Dgkv~~F~~sKc~~~~~~krnPRkl~WT~~yRr~~kK~~-~e~~--~kkR~~rtvK~qRaivg~sLe~I~~k 97 (125)
T PTZ00033 28 STKPVLTFLRPKCFALYMRKKNPRFLPWTRTYRRINRKTT-TDRV--QRRRAARTVKVQRAIVGADLSYIQEV 97 (125)
T ss_pred CCCCEEEEecHHHHHHHHCcCCCccchHHHHHHHHhCCcc-hhHH--HHHHhcCCccchHHHHHHHHHHHHHH
Confidence 4577899999999999999999999999999999999985 4554 37888889999999999999999887
No 20
>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional
Probab=98.07 E-value=1.9e-06 Score=77.88 Aligned_cols=53 Identities=25% Similarity=0.424 Sum_probs=44.4
Q ss_pred ccceeecCCcEEEEeeeeeeeeccccccccccccccCCccccchhhhhhhhccC
Q psy4929 167 KEPVEVMPNISYTACATLKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKD 220 (633)
Q Consensus 167 ~~p~~~~~~~~y~~~a~~~~~~f~~~~c~k~~~~~~~~~~~~~~~~~r~l~~~~ 220 (633)
..||.-..|.-|+ ..+.+.|+|+|++|+|+|+.+|+|+++.||+.||+.+++-
T Consensus 11 G~kIyPG~G~~fV-R~DGkvf~FcssKC~k~f~~kRnPRKlkWT~~yRk~~g~~ 63 (131)
T PRK14891 11 GEEIEPGTGTMFV-RKDGTVLHFVDSKCEKNYDLGREARDLEWTEAGRAEKGPA 63 (131)
T ss_pred CCcccCCCCcEEE-ecCCCEEEEecHHHHHHHHccCCCccchhHHHHHHHcCch
Confidence 3444444556665 3778899999999999999999999999999999999985
No 21
>KOG0783|consensus
Probab=97.73 E-value=1.2e-05 Score=91.40 Aligned_cols=108 Identities=17% Similarity=0.151 Sum_probs=71.9
Q ss_pred HHHHHHHhCC-------CcccEEEEeCCCccceEEEeEEeEeeccChhhhhhhcCCCC-CCCCeEEcCCCCHhhhhhhhe
Q psy4929 6 ERFAFMFNNE-------ILCDVHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLA-TRSDEIELPDVEPAAFLALLR 77 (633)
Q Consensus 6 ~~l~~l~~~~-------~~sDV~f~v~~~~~~~~f~aHk~VLaa~S~yF~amf~~~~~-~~~~~I~l~dv~~~~f~~lL~ 77 (633)
..++++++|. ..-|+.+++.+| +.++|||++|+||++||..||..-|. +++-.+..-.+..+.++.+|+
T Consensus 692 n~ia~~~~N~l~lsdh~e~~d~~i~~KDG---kvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLd 768 (1267)
T KOG0783|consen 692 NDIAQLYNNFLVLSDHEETMDTVIKLKDG---KVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLD 768 (1267)
T ss_pred cHHHHHhcCeeEecCCccceeEEEEecCC---cCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHH
Confidence 3445555542 344777888775 78999999999999999999998774 444344444566999999999
Q ss_pred ecc-cCcchhhh---------hhhhhccccccCCchhhhhhhhhhhhhh
Q psy4929 78 CSM-TGKEQVVH---------RFQHIESRWGYSGTSDRIRFSVDRRIFV 116 (633)
Q Consensus 78 ylY-TG~~~~~~---------rfq~la~~w~y~gl~d~i~f~vdk~I~i 116 (633)
|+| ++++.++. ....++.++-...+.+.|+..+-+.+.+
T Consensus 769 ylYs~d~~~~~k~~~~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl~l 817 (1267)
T KOG0783|consen 769 YLYSDDKVELFKDLKESDFMFEILSIADQLLILELKSICEQSLLRKLNL 817 (1267)
T ss_pred HHHccchHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcc
Confidence 999 55544422 2234555555555555555555444443
No 22
>PF01246 Ribosomal_L24e: Ribosomal protein L24e; InterPro: IPR000988 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeabacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families [] consists of mammalian ribosomal protein L24; yeast ribosomal protein L30A/B (Rp29) (YL21); Kluyveromyces lactis ribosomal protein L30; Arabidopsis thaliana ribosomal protein L24 homolog; Haloarcula marismortui ribosomal protein HL21/HL22; and Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ1201. These proteins have 60 to 160 amino-acid residues. This entry represents proteins related to the L24e ribosomal proteins.; PDB: 2ZKR_u 1VQ9_U 1VQL_U 1KD1_V 1VQP_U 3CCM_U 3CD6_U 3CCL_U 3CCR_U 1Q86_V ....
Probab=97.45 E-value=4.2e-05 Score=63.19 Aligned_cols=56 Identities=41% Similarity=0.633 Sum_probs=38.2
Q ss_pred ccceeecCCcEEEEeeeeeeeeccccccccccccccCCccccchhhhhhhhccCCcc
Q psy4929 167 KEPVEVMPNISYTACATLKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKDLAV 223 (633)
Q Consensus 167 ~~p~~~~~~~~y~~~a~~~~~~f~~~~c~k~~~~~~~~~~~~~~~~~r~l~~~~~~~ 223 (633)
..+++--.|.-|+. .+.+.|.|+|++|.++|..+++|+++.||..||+.+.+.+..
T Consensus 10 g~~I~PG~G~~~Vr-~DG~v~~F~s~Kc~~~~~~krnPrkl~WT~~~Rr~~kK~~~~ 65 (71)
T PF01246_consen 10 GYKIYPGHGKMYVR-NDGKVFYFCSSKCEKLFKLKRNPRKLKWTVAYRRQHKKGQSE 65 (71)
T ss_dssp -SEE-SSSSEEEE--TTS-EEEESSHHHHHHHHTT--GGGSTTSTTTCHHH-----S
T ss_pred CCccCCCCCeEEEe-cCCCeEEEeCHHHHHHHHccCCcccchhHHHHHHHhCchhhh
Confidence 33444444556654 788899999999999999999999999999999999998853
No 23
>COG2075 RPL24A Ribosomal protein L24E [Translation, ribosomal structure and biogenesis]
Probab=97.32 E-value=0.00011 Score=59.02 Aligned_cols=52 Identities=48% Similarity=0.851 Sum_probs=41.4
Q ss_pred ceeecCCcEEEEeeeeeeeeccccccccccccccCCccccchhhhhhhhccCC
Q psy4929 169 PVEVMPNISYTACATLKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKDL 221 (633)
Q Consensus 169 p~~~~~~~~y~~~a~~~~~~f~~~~c~k~~~~~~~~~~~~~~~~~r~l~~~~~ 221 (633)
+++--.|+-|+ .-+..-+.|+|++|+|+|+.+|+|+++.||..+|..+.+.+
T Consensus 12 ~I~PGtG~m~V-r~Dg~v~~FcssKc~k~~~~~rnPRk~~WT~~~~~~~~k~~ 63 (66)
T COG2075 12 KIEPGTGIMYV-RNDGKVLRFCSSKCEKLFKLGRNPRKLKWTKKYRKMHKKEI 63 (66)
T ss_pred ccCCCceEEEE-ecCCeEEEEechhHHHHHHccCCCccchhHHHHHHHHHhhh
Confidence 33333344443 35667799999999999999999999999999999988854
No 24
>KOG1722|consensus
Probab=96.97 E-value=0.0002 Score=65.46 Aligned_cols=79 Identities=34% Similarity=0.576 Sum_probs=62.3
Q ss_pred ecCCcEEE-EeeeeeeeeccccccccccccccCCccccchhhhhhhhccCCccCcchhhhhccCC--Cccchhhhhhhhh
Q psy4929 172 VMPNISYT-ACATLKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKDLAVDPSFEFAKRRNV--PLKYDREFWNKTV 248 (633)
Q Consensus 172 ~~~~~~y~-~~a~~~~~~f~~~~c~k~~~~~~~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~--~~~~~r~~~~~~~ 248 (633)
|+||.--. +..+.+.|+|.+++|.+.|+..++|+.+.||.-||+-+.+++ +-|..+++.. -..|+|.++|.++
T Consensus 13 IyPG~G~r~vR~D~Kvf~Fln~Kc~~~f~~rrnPr~l~WTvLyR~khkKg~----~ee~~kkrtrrt~k~~qRaI~GasL 88 (155)
T KOG1722|consen 13 IYPGHGRRFVRGDGKVFRFLNSKCESLFLQRRNPRRLAWTVLYRKKHKKGI----QEEAAKKRTRRTVKKFQRAIVGASL 88 (155)
T ss_pred ecCCCceeEEecCCeeeeehhhhhHHHHHhccChhhhhHHHHHHHHhhcch----hHHHHHHHhhhhhhhhhhhhccccH
Confidence 45543222 345678899999999999999999999999999999999986 3555555542 2349999999999
Q ss_pred hhhhhh
Q psy4929 249 EAIKKV 254 (633)
Q Consensus 249 ~~~~~~ 254 (633)
..|..-
T Consensus 89 ~~I~~K 94 (155)
T KOG1722|consen 89 DVILEK 94 (155)
T ss_pred HHHHHH
Confidence 998776
No 25
>cd00472 Ribosomal_L24e_L24 Ribosomal protein L24e/L24 is a ribosomal protein found in eukaryotes (L24) and in archaea (L24e, distinct from archaeal L24). L24e/L24 is located on the surface of the large subunit, adjacent to proteins L14 and L3, and near the translation factor binding site. L24e/L24 appears to play a role in the kinetics of peptide synthesis, and may be involved in interactions between the large and small subunits, either directly or through other factors. In mouse, a deletion mutation in L24 has been identified as the cause for the belly spot and tail (Bst) mutation that results in disrupted pigmentation, somitogenesis and retinal cell fate determination. L24 may be an important protein in eukaryotic reproduction: in shrimp, L24 expression is elevated in the ovary, suggesting a role in oogenesis, and in Arabidopsis, L24 has been proposed to have a specific function in gynoecium development. No protein with sequence or structural homology to L24e/L24 has been identifi
Probab=96.72 E-value=0.00072 Score=52.94 Aligned_cols=44 Identities=43% Similarity=0.689 Sum_probs=36.9
Q ss_pred ccceeecCCcEEEEeeeeeeeeccccccccccccccCCccccchh
Q psy4929 167 KEPVEVMPNISYTACATLKIFRFCRSKCHKLFKRKKNPRKTAWTK 211 (633)
Q Consensus 167 ~~p~~~~~~~~y~~~a~~~~~~f~~~~c~k~~~~~~~~~~~~~~~ 211 (633)
..+++-..|.-|+- .+.+.|.|++++|+++|+.+++|+++.||.
T Consensus 10 g~~I~PG~G~~~Vr-~Dgkv~~F~s~Kc~~~~~~krnPRkv~WT~ 53 (54)
T cd00472 10 GYKIYPGHGKMYVR-NDGKVFRFCSSKCEKNFLRKRNPRKLKWTV 53 (54)
T ss_pred CCeecCCCccEEEe-cCCCEEEEECHHHHHHHHCcCCCCcceeec
Confidence 44555556667765 788999999999999999999999999996
No 26
>PRK00807 50S ribosomal protein L24e; Validated
Probab=96.68 E-value=0.00072 Score=52.64 Aligned_cols=41 Identities=39% Similarity=0.654 Sum_probs=32.9
Q ss_pred ecCCcEEE-EeeeeeeeeccccccccccccccCCccccchhh
Q psy4929 172 VMPNISYT-ACATLKIFRFCRSKCHKLFKRKKNPRKTAWTKA 212 (633)
Q Consensus 172 ~~~~~~y~-~~a~~~~~~f~~~~c~k~~~~~~~~~~~~~~~~ 212 (633)
|+||.--. +-.+.+.|.|+|++|.++|+.+++|+++.||.+
T Consensus 11 I~pg~G~~~vr~Dgkv~~Fcs~KC~~~f~~~~nprk~~WT~~ 52 (52)
T PRK00807 11 IEPGTGKMYVKKDGTILYFCSSKCEKNYKLGRVPRKLKWTKA 52 (52)
T ss_pred EcCCCCeEEEEeCCcEEEEeCHHHHHHHHccCCCCccccccC
Confidence 44444333 346788899999999999999999999999963
No 27
>KOG2838|consensus
Probab=93.39 E-value=0.02 Score=58.51 Aligned_cols=84 Identities=21% Similarity=0.317 Sum_probs=58.2
Q ss_pred cHHHHHHHHHhCCCcccEEEE-eCCCc-----------cceEEEeEEeEeeccChhhhhhhcCCC----C------CCCC
Q psy4929 3 LVKERFAFMFNNEILCDVHFI-VGRET-----------ELQRIPAHRFVLSVGSVVFDAMFNGTL----A------TRSD 60 (633)
Q Consensus 3 tl~~~l~~l~~~~~~sDV~f~-v~~~~-----------~~~~f~aHk~VLaa~S~yF~amf~~~~----~------~~~~ 60 (633)
.|-++|+.|++....-|+.++ +.+++ +..+++||++|.||||++|+.++.... + +.+.
T Consensus 221 kLd~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~Pk 300 (401)
T KOG2838|consen 221 KLDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPK 300 (401)
T ss_pred hhhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCc
Confidence 355788899988765554443 32211 234799999999999999999986432 1 2345
Q ss_pred eEEcC-CCCHhhhh-hhheecccCcchh
Q psy4929 61 EIELP-DVEPAAFL-ALLRCSMTGKEQV 86 (633)
Q Consensus 61 ~I~l~-dv~~~~f~-~lL~ylYTG~~~~ 86 (633)
.|.+. -|=|.+|. .+|.|+||+.++.
T Consensus 301 RIifdE~I~PkafA~i~lhclYTD~lDl 328 (401)
T KOG2838|consen 301 RIIFDELIFPKAFAPIFLHCLYTDRLDL 328 (401)
T ss_pred eeechhhhcchhhhhhhhhhheecccch
Confidence 56664 46677775 4679999999884
No 28
>PHA02713 hypothetical protein; Provisional
Probab=93.25 E-value=0.13 Score=59.36 Aligned_cols=32 Identities=19% Similarity=0.060 Sum_probs=29.2
Q ss_pred hhcHHHHHHHHhhcCChHHHHHHHHHHHhchH
Q psy4929 406 QANLTYHCAPARLFDEPQLAALCLDTIDKNTP 437 (633)
Q Consensus 406 ~~Nc~~il~~A~~~~~~~L~~~c~~fI~~nf~ 437 (633)
.+|+..++..|..+..+.|.+.|.+|+..++.
T Consensus 93 ~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~ 124 (557)
T PHA02713 93 SMNVIDVLKCADYLLIDDLVTDCESYIKDYTN 124 (557)
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCC
Confidence 37999999999999999999999999987754
No 29
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=91.28 E-value=0.054 Score=46.93 Aligned_cols=78 Identities=21% Similarity=0.303 Sum_probs=54.9
Q ss_pred EEEEeCCCccceEEEeEEeEee-ccChhhhhhhcCC-C---CCCCCeEEcCCCCHhhhhhhheeccc-Ccchh-----hh
Q psy4929 20 VHFIVGRETELQRIPAHRFVLS-VGSVVFDAMFNGT-L---ATRSDEIELPDVEPAAFLALLRCSMT-GKEQV-----VH 88 (633)
Q Consensus 20 V~f~v~~~~~~~~f~aHk~VLa-a~S~yF~amf~~~-~---~~~~~~I~l~dv~~~~f~~lL~ylYT-G~~~~-----~~ 88 (633)
|.|.||| +.|.+-+..|. ....+|..|+.+. . ......+-| |-+|..|+.+|+|+-+ |.+.. ..
T Consensus 1 V~lNVGG----~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~~~~~~~ 75 (94)
T PF02214_consen 1 VRLNVGG----TIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPIPDEICLE 75 (94)
T ss_dssp EEEEETT----EEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB---TTS-HH
T ss_pred CEEEECC----EEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccCCCCchhHH
Confidence 6789999 99999999998 6667999999974 1 245566655 7899999999999999 55543 12
Q ss_pred hhhhhccccccCCc
Q psy4929 89 RFQHIESRWGYSGT 102 (633)
Q Consensus 89 rfq~la~~w~y~gl 102 (633)
.+..-+..|++..+
T Consensus 76 ~l~~Ea~fy~l~~l 89 (94)
T PF02214_consen 76 ELLEEAEFYGLDEL 89 (94)
T ss_dssp HHHHHHHHHT-HHH
T ss_pred HHHHHHHHcCCCcc
Confidence 34444455655444
No 30
>KOG2716|consensus
Probab=90.76 E-value=0.21 Score=50.76 Aligned_cols=89 Identities=17% Similarity=0.181 Sum_probs=69.9
Q ss_pred EEEEeCCCccceEEEeEEeEeeccChhhhhhhcCCCC--CC-CCeEEcCCCCHhhhhhhheecccCcchhh------hhh
Q psy4929 20 VHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLA--TR-SDEIELPDVEPAAFLALLRCSMTGKEQVV------HRF 90 (633)
Q Consensus 20 V~f~v~~~~~~~~f~aHk~VLaa~S~yF~amf~~~~~--~~-~~~I~l~dv~~~~f~~lL~ylYTG~~~~~------~rf 90 (633)
|.+-||| ..|...|.-|.--..+|++|+.+++. .+ +..|- -|=+|.-|..+|+||-.|.+.+. ...
T Consensus 7 vkLnvGG----~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IF-IDRSpKHF~~ILNfmRdGdv~LPe~~kel~El 81 (230)
T KOG2716|consen 7 VKLNVGG----TIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIF-IDRSPKHFDTILNFMRDGDVDLPESEKELKEL 81 (230)
T ss_pred EEEecCC----eEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEE-ecCChhHHHHHHHhhhcccccCccchHHHHHH
Confidence 4577888 89999999999999999999999873 22 33344 48899999999999999987752 234
Q ss_pred hhhccccccCCchhhhhhhhhhh
Q psy4929 91 QHIESRWGYSGTSDRIRFSVDRR 113 (633)
Q Consensus 91 q~la~~w~y~gl~d~i~f~vdk~ 113 (633)
..=|.-|.+.||.+.|+-++...
T Consensus 82 ~~EA~fYlL~~Lv~~C~~~i~~~ 104 (230)
T KOG2716|consen 82 LREAEFYLLDGLVELCQSAIARL 104 (230)
T ss_pred HHHHHHhhHHHHHHHHHHHhhhc
Confidence 45567799999999998755543
No 31
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=90.43 E-value=0.23 Score=43.59 Aligned_cols=37 Identities=24% Similarity=0.425 Sum_probs=30.9
Q ss_pred eceeeec-ccccCcchHHHHHHhhccCchHHHHHHHHhhhhc
Q psy4929 315 IHEMQIR-ESNLLHGKQILLTTARLFDEPQLAALCLDTIDKN 355 (633)
Q Consensus 315 ~~~~~l~-~~~~~~~~~~lL~~Ad~f~~~~l~~~C~~~L~~~ 355 (633)
..++.+. .+++.+ ++.+|++|+++.|.+.|.++|.++
T Consensus 73 ~~~~~~~~~~~~~~----ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 73 TGEIEINSDENVEE----LLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp HSEEEEE-TTTHHH----HHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred CCcccCCHHHHHHH----HHHHHHHhCcHHHHHHHHHHHHhC
Confidence 4466666 677766 999999999999999999998764
No 32
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=89.17 E-value=0.38 Score=38.67 Aligned_cols=56 Identities=16% Similarity=0.210 Sum_probs=43.7
Q ss_pred EEEEeCCCccceEEEeEEeEeeccChhhhhhhcCCCCCCCCeEEcCCCCHhhhhhhheecc
Q psy4929 20 VHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLATRSDEIELPDVEPAAFLALLRCSM 80 (633)
Q Consensus 20 V~f~v~~~~~~~~f~aHk~VLaa~S~yF~amf~~~~~~~~~~I~l~dv~~~~f~~lL~ylY 80 (633)
|+++..+| +.|.+-+.+. -.|..++.|+.+.... ...|.+++++...++.+++|++
T Consensus 3 v~L~SsDg---~~f~V~~~~a-~~S~~i~~ml~~~~~~-~~~Ipl~~v~~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDG---QEFEVSREAA-KQSKTIKNMLEDLGDE-DEPIPLPNVSSRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTS---EEEEEEHHHH-TTSHHHHHHHHCTCCC-GTEEEETTS-HHHHHHHHHHHH
T ss_pred EEEEcCCC---CEEEeeHHHH-HHhHHHHHHHhhhccc-ccccccCccCHHHHHHHHHHHH
Confidence 56777665 8899888776 5899999999863322 2279999999999999999985
No 33
>KOG0511|consensus
Probab=88.62 E-value=0.071 Score=56.99 Aligned_cols=56 Identities=21% Similarity=0.360 Sum_probs=44.8
Q ss_pred eEEEeEEeEeeccChhhhhhhcCCCCC-C-C---CeEEcCCCCHhhhhhhheecccCcchhh
Q psy4929 31 QRIPAHRFVLSVGSVVFDAMFNGTLAT-R-S---DEIELPDVEPAAFLALLRCSMTGKEQVV 87 (633)
Q Consensus 31 ~~f~aHk~VLaa~S~yF~amf~~~~~~-~-~---~~I~l~dv~~~~f~~lL~ylYTG~~~~~ 87 (633)
.+.|||++++ .|++||..||.|++.. + . ....+|..+..+.+..++|+|+.+.++.
T Consensus 301 ~RyP~hla~i-~R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~ 361 (516)
T KOG0511|consen 301 DRYPAHLARI-LRVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDII 361 (516)
T ss_pred ccccHHHHHH-HHHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccch
Confidence 3699999999 5899999999999842 1 2 2345567778899999999999998843
No 34
>KOG0511|consensus
Probab=87.60 E-value=0.061 Score=57.44 Aligned_cols=72 Identities=19% Similarity=0.213 Sum_probs=54.4
Q ss_pred HHHHHHhCCC---cccEEEEeCCCccceEEEeEEeEeeccChhhhhhhcCCCCCCCCeEEcCCCCHhhhhhhheecccC
Q psy4929 7 RFAFMFNNEI---LCDVHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLATRSDEIELPDVEPAAFLALLRCSMTG 82 (633)
Q Consensus 7 ~l~~l~~~~~---~sDV~f~v~~~~~~~~f~aHk~VLaa~S~yF~amf~~~~~~~~~~I~l~dv~~~~f~~lL~ylYTG 82 (633)
.+..++++.- ..|++|.+..| ..|.|||..|+|||++|...+..-+ ....+|+-..+-+.+|..+|+|+|-.
T Consensus 136 hi~s~l~dt~l~~~~di~f~~q~g---~~f~ahkfll~arSs~~~~k~v~~~-~~~heI~~~~v~~~~f~~flk~lyl~ 210 (516)
T KOG0511|consen 136 HIQSSLRDTFLGCCHDIDFLQQEG---ANFDAHKFLLEARSSNYFPKDVMFY-VQGHEIEAHRVILSAFSPFLKQLYLN 210 (516)
T ss_pred HHHHHhhccccccccchHHHhhcc---ccccHHHHHHHhhhcccCchhhhhc-cccCchhhhhhhHhhhhHHHHHHHHh
Confidence 4555555543 35999988775 7899999999999999976665433 24556666678899999999999876
No 35
>KOG1987|consensus
Probab=85.85 E-value=0.36 Score=50.66 Aligned_cols=54 Identities=28% Similarity=0.294 Sum_probs=46.4
Q ss_pred eEEEeEEeEeeccChhhhhhhcCCCC-CCCCeEEcCCCCHhhhhhhheecccCcc
Q psy4929 31 QRIPAHRFVLSVGSVVFDAMFNGTLA-TRSDEIELPDVEPAAFLALLRCSMTGKE 84 (633)
Q Consensus 31 ~~f~aHk~VLaa~S~yF~amf~~~~~-~~~~~I~l~dv~~~~f~~lL~ylYTG~~ 84 (633)
..+.+|+.+++|+|++|++|+..+.. .....+.+.+.++..++++..|.|++.-
T Consensus 110 g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~ 164 (297)
T KOG1987|consen 110 GFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQ 164 (297)
T ss_pred cEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccc
Confidence 45999999999999999999998653 4556668889999999999999999643
No 36
>KOG4441|consensus
Probab=85.45 E-value=1 Score=52.06 Aligned_cols=51 Identities=12% Similarity=0.109 Sum_probs=39.4
Q ss_pred ccccCCccccchhhhhhhhccCCccCcchhhhhccCCCccchhhhhhhh---hhhhhhh
Q psy4929 199 KRKKNPRKTAWTKAYRKVRGKDLAVDPSFEFAKRRNVPLKYDREFWNKT---VEAIKKV 254 (633)
Q Consensus 199 ~~~~~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~ 254 (633)
....++..++ +.+..+|.+...||+++.+..++++ .||+++++. +++|++.
T Consensus 15 ~~~~h~~~~l--~~l~~lr~~~~lcDv~L~v~~~~~~---aHR~VLAa~S~YFraMFt~ 68 (571)
T KOG4441|consen 15 TDPSHSKFLL--QGLNELREEGLLCDVTLLVGDREFP---AHRVVLAACSPYFRAMFTS 68 (571)
T ss_pred ccHHHHHHHH--HHHHHHHHhCCCceEEEEECCeeec---hHHHHHHhccHHHHHHhcC
Confidence 3444455555 7889999999999999999996665 899888887 6666664
No 37
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=80.16 E-value=1.3 Score=47.02 Aligned_cols=60 Identities=13% Similarity=0.228 Sum_probs=51.5
Q ss_pred CcchhcHHHHHHHHhhcCChHHHHHHHHHHHhchHHHhcC-CCCcccCHHHHHhh---hcCCCc
Q psy4929 403 SAWQANLTYHCAPARLFDEPQLAALCLDTIDKNTPDALAA-DGFTDVDRDTLCAV---LERDTL 462 (633)
Q Consensus 403 ~l~~~Nc~~il~~A~~~~~~~L~~~c~~fI~~nf~~v~~s-eeFl~Ls~~~L~~i---L~sD~L 462 (633)
.++++|++.|+--|+...-++|.+.|..|+.+|+.+++.+ -++.-|+.+.|..| +..++|
T Consensus 71 ~l~~~NvvsIliSS~FL~M~~Lve~cl~y~~~~~~~Iv~~~~nl~Cl~~~Ll~RLa~~~t~~el 134 (317)
T PF11822_consen 71 SLTPSNVVSILISSEFLQMESLVEECLQYCHDHMSEIVASPCNLNCLNDNLLTRLADMFTHEEL 134 (317)
T ss_pred cCCcCcEEEeEehhhhhccHHHHHHHHHHHHHhHHHHHcCCCCcccCCHHHHHHHHHhcCcccH
Confidence 4677999999999999999999999999999999999995 58888998887777 555544
No 38
>PHA03098 kelch-like protein; Provisional
Probab=74.83 E-value=7.8 Score=44.14 Aligned_cols=38 Identities=32% Similarity=0.581 Sum_probs=35.3
Q ss_pred CCCcccEEEEe--CCCccceEEEeEEeEeeccChhhhhhhcCCC
Q psy4929 14 NEILCDVHFIV--GRETELQRIPAHRFVLSVGSVVFDAMFNGTL 55 (633)
Q Consensus 14 ~~~~sDV~f~v--~~~~~~~~f~aHk~VLaa~S~yF~amf~~~~ 55 (633)
++.+|||++++ ++ +.|+|||.|||++|+||++||+++|
T Consensus 6 ~~~~~Dv~l~~~~~~----~~~~~Hk~vLaa~S~yF~~mf~~~~ 45 (534)
T PHA03098 6 LQKFCDESIIIVNGG----GIIKVHKIILSSSSEYFKKMFKNNF 45 (534)
T ss_pred cCCCCCEEEEEEcCC----EEEEeHHHHHHhhhHHHHHHHhCCC
Confidence 78999999998 66 8999999999999999999998755
No 39
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=71.65 E-value=3 Score=34.02 Aligned_cols=29 Identities=31% Similarity=0.531 Sum_probs=22.7
Q ss_pred eeeecccccCcchHHHHHHhhccCchHHHHHHH
Q psy4929 317 EMQIRESNLLHGKQILLTTARLFDEPQLAALCL 349 (633)
Q Consensus 317 ~~~l~~~~~~~~~~~lL~~Ad~f~~~~l~~~C~ 349 (633)
.+.+..+++.+ ++.+|++|+++.+...|.
T Consensus 62 ~~~~~~~~~~~----l~~~a~~~~~~~l~~~c~ 90 (90)
T smart00225 62 KLDLPEENVEE----LLELADYLQIPGLVELCE 90 (90)
T ss_pred eeecCHHHHHH----HHHHHHHHCcHHHHhhhC
Confidence 44555555555 999999999999999984
No 40
>KOG2714|consensus
Probab=70.96 E-value=3.2 Score=45.59 Aligned_cols=63 Identities=21% Similarity=0.284 Sum_probs=50.0
Q ss_pred EEEEeCCCccceEEEeEEeEeeccC--hhhhhhhcCCCCCCC--CeEEcCCCCHhhhhhhheecccCcchh
Q psy4929 20 VHFIVGRETELQRIPAHRFVLSVGS--VVFDAMFNGTLATRS--DEIELPDVEPAAFLALLRCSMTGKEQV 86 (633)
Q Consensus 20 V~f~v~~~~~~~~f~aHk~VLaa~S--~yF~amf~~~~~~~~--~~I~l~dv~~~~f~~lL~ylYTG~~~~ 86 (633)
|.|-||| +.|..-+--|+-.. .+|.+++++.+.+.+ .-+.+-|-+|+.|..+|+|+-||+++.
T Consensus 13 V~lNVGG----riF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~ 79 (465)
T KOG2714|consen 13 VKLNVGG----RIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLDA 79 (465)
T ss_pred EEEecCc----eEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCCC
Confidence 6788999 89998877775444 799999998875332 223445889999999999999999987
No 41
>KOG4350|consensus
Probab=69.47 E-value=7.1 Score=42.63 Aligned_cols=31 Identities=23% Similarity=0.510 Sum_probs=27.3
Q ss_pred HHHHHhhccCchHHHHHHHHhhhhcCchhhh
Q psy4929 331 ILLTTARLFDEPQLAALCLDTIDKNTPDALA 361 (633)
Q Consensus 331 ~lL~~Ad~f~~~~l~~~C~~~L~~~l~~~~~ 361 (633)
+++.+|..|++++|...|+.|++++-.+++.
T Consensus 152 mifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~ 182 (620)
T KOG4350|consen 152 MIFDAAYLYQLTDLTDYCMMFMDRNADQLLE 182 (620)
T ss_pred eeeeHHHHhcchHHHHHHHHHHhcCHHhhhc
Confidence 4899999999999999999999999855554
No 42
>KOG3473|consensus
Probab=68.81 E-value=6.8 Score=34.51 Aligned_cols=56 Identities=14% Similarity=0.217 Sum_probs=42.7
Q ss_pred EEEEeCCCccceEEEeEEeEeeccChhhhhhhcCCC---CCCCCeEEcCCCCHhhhhhhheec
Q psy4929 20 VHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTL---ATRSDEIELPDVEPAAFLALLRCS 79 (633)
Q Consensus 20 V~f~v~~~~~~~~f~aHk~VLaa~S~yF~amf~~~~---~~~~~~I~l~dv~~~~f~~lL~yl 79 (633)
|.++.+++ .+|-.-| -.|.-|+-.++||+|.. +....+|.++++....++.+.+|+
T Consensus 19 VkLvS~Dd---hefiikr-e~AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl 77 (112)
T KOG3473|consen 19 VKLVSSDD---HEFIIKR-EHAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYL 77 (112)
T ss_pred eEeecCCC---cEEEEee-hhhhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHh
Confidence 55655554 5555444 35678999999999865 366788999999999999998886
No 43
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=67.16 E-value=3.2 Score=36.74 Aligned_cols=59 Identities=17% Similarity=0.210 Sum_probs=46.1
Q ss_pred EEEEeCCCccceEEEeEEeEeeccChhhhhhhcCCCC--CCCCeEEcCCCCHhhhhhhheecccC
Q psy4929 20 VHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLA--TRSDEIELPDVEPAAFLALLRCSMTG 82 (633)
Q Consensus 20 V~f~v~~~~~~~~f~aHk~VLaa~S~yF~amf~~~~~--~~~~~I~l~dv~~~~f~~lL~ylYTG 82 (633)
|+++..+| +.|.+.+.+. ..|..++.|+.+.-. .+...|.+++|+..+++.+++|++--
T Consensus 4 v~L~S~Dg---~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h 64 (104)
T smart00512 4 IKLISSDG---EVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHH 64 (104)
T ss_pred EEEEeCCC---CEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHc
Confidence 56666664 7899998866 689999999976322 22358999999999999999998653
No 44
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=66.23 E-value=7.3 Score=33.54 Aligned_cols=90 Identities=21% Similarity=0.225 Sum_probs=55.9
Q ss_pred HHHHhhccCchHHHHHHHHhhhhcCchhhhhcccccccccccccCCCCCCCCCCCchhhhcccccCCCCCCCcchhcHHH
Q psy4929 332 LLTTARLFDEPQLAALCLDTIDKNTPDALAADGFTDKVVTLSSFSSSDGRKPSAPDSRCRSRLSANPGIEPSAWQANLTY 411 (633)
Q Consensus 332 lL~~Ad~f~~~~l~~~C~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~c~~~L~~~~~~~~~l~~~Nc~~ 411 (633)
++..|+.|+..++.+.|.+++..+........-|.+ +..+-...
T Consensus 4 i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~------------------------------------L~~~~l~~ 47 (103)
T PF07707_consen 4 IYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLE------------------------------------LPFDQLIE 47 (103)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHC------------------------------------S-HHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhc------------------------------------CCHHHHHH
Confidence 788999999999999999999999855443222222 12233334
Q ss_pred HHHHHhh--cCChHHHHHHHHHHHhc-------hHHHhcCCCCcccCHHHHHhhh
Q psy4929 412 HCAPARL--FDEPQLAALCLDTIDKN-------TPDALAADGFTDVDRDTLCAVL 457 (633)
Q Consensus 412 il~~A~~--~~~~~L~~~c~~fI~~n-------f~~v~~seeFl~Ls~~~L~~iL 457 (633)
+++--.. .++.++.+.+..++..+ +..+++.=.|..|+.+.|...+
T Consensus 48 iL~~~~l~v~~E~~v~~av~~W~~~~~~~r~~~~~~Ll~~iR~~~l~~~~L~~~v 102 (103)
T PF07707_consen 48 ILSSDDLNVSSEDDVFEAVLRWLKHNPENREEHLKELLSCIRFPLLSPEELQNVV 102 (103)
T ss_dssp HHHTSS--ECTCCCHHHHHHHHHHCTHHHHTTTHHHHHCCCHHHCT-HHHHHHCC
T ss_pred HHhccccccccHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCCcccCCHHHHHHHH
Confidence 4443222 24567777888887665 4455666667777777766544
No 45
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=52.18 E-value=4.2 Score=34.18 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=22.9
Q ss_pred HHHHhhccCchHHHHHHHHhhhhcC
Q psy4929 332 LLTTARLFDEPQLAALCLDTIDKNT 356 (633)
Q Consensus 332 lL~~Ad~f~~~~l~~~C~~~L~~~l 356 (633)
|+.+|++++++.|.+.|+..+...+
T Consensus 19 l~~AA~yL~I~~L~~~~~~~iA~~i 43 (78)
T PF01466_consen 19 LLNAANYLDIKGLLDLCCKYIANMI 43 (78)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcchHHHHHHHHHHHHHh
Confidence 9999999999999999999998887
No 46
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=49.28 E-value=43 Score=28.17 Aligned_cols=27 Identities=26% Similarity=0.205 Sum_probs=23.8
Q ss_pred HHHHhhccCchHHHHHHHHhhhhcCch
Q psy4929 332 LLTTARLFDEPQLAALCLDTIDKNTPD 358 (633)
Q Consensus 332 lL~~Ad~f~~~~l~~~C~~~L~~~l~~ 358 (633)
++..|+.|+.+.+.+.|.+++.++...
T Consensus 4 i~~~a~~~~~~~L~~~~~~~i~~nf~~ 30 (101)
T smart00875 4 IRRFAELYGLEELLEKALRFILKNFLE 30 (101)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 677899999999999999999998743
No 47
>PF13313 DUF4082: Domain of unknown function (DUF4082)
Probab=44.52 E-value=36 Score=32.50 Aligned_cols=74 Identities=18% Similarity=0.221 Sum_probs=48.9
Q ss_pred hhhhhhhhhhhccccccccccCCCcceEEEEEEEecCCceeecCCccccccCCCcceeeecccceeecCCcEEEEeeee
Q psy4929 106 IRFSVDRRIFVVGFGLYGCIHGPTEYDVQMQLVRTANGKVIAGNRTSFACDGSTFTSRVMFKEPVEVMPNISYTACATL 184 (633)
Q Consensus 106 i~f~vdk~I~i~gfglygs~~~~~~y~v~i~l~~~~~~~~l~~~~~~~~~d~~~~~~rv~f~~p~~~~~~~~y~~~a~~ 184 (633)
++|..+..-.|.|+.-|......|.+.. .+=..+|..|+.-... .....---.+.|..||.|.+|+-|+|+.--
T Consensus 23 ~kF~~~~~G~vtgvrfYk~~~ntgthtg---sLWsa~G~lLAt~tft--~etasGWQt~~f~~PV~v~AgttYVvSY~a 96 (149)
T PF13313_consen 23 VKFRSSVAGQVTGVRFYKGAGNTGTHTG---SLWSADGTLLATATFT--NETASGWQTVTFSTPVAVTAGTTYVVSYHA 96 (149)
T ss_pred eEEEecCCcEEEEEEEEeCCCCCCceEE---EEECCCCCEEEEEEEc--CCCCCceEEEeccCCeEEcCCCeEEEEEEC
Confidence 3455566666678888885444444433 3334678888876432 113445678999999999999999996553
No 48
>KOG1428|consensus
Probab=41.26 E-value=19 Score=45.26 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=32.9
Q ss_pred eeeeccccccCcccccCC-CccEEEEecceeeeeeeee
Q psy4929 586 QVVHRFQHIESRWGYSGT-SDRIRGLIEGAVIREVLLF 622 (633)
Q Consensus 586 ~~v~rf~~~~~~w~~~~~-~~~i~~~~~~~~~~~~~~~ 622 (633)
.+++||...-+.|+|+.+ -..|||+||+.|...++-.
T Consensus 1053 SVaNRFd~~GGGWGYSA~SVEAIrFsvskeI~L~GvGL 1090 (3738)
T KOG1428|consen 1053 SVANRFDGTGGGWGYSAHSVEAIRFSVSKEIRLVGVGL 1090 (3738)
T ss_pred eeeeecccCCCCccccccchhheeeecccceEEEeeee
Confidence 378999999999999988 7899999999999888754
No 49
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=39.46 E-value=26 Score=37.48 Aligned_cols=37 Identities=16% Similarity=0.336 Sum_probs=33.0
Q ss_pred ceeeecccccCcchHHHHHHhhccCchHHHHHHHHhhhhcC
Q psy4929 316 HEMQIRESNLLHGKQILLTTARLFDEPQLAALCLDTIDKNT 356 (633)
Q Consensus 316 ~~~~l~~~~~~~~~~~lL~~Ad~f~~~~l~~~C~~~L~~~l 356 (633)
..-+|+++|+-. +|.-|++++++.|.+.|+.|+..++
T Consensus 68 ~~p~l~~~Nvvs----IliSS~FL~M~~Lve~cl~y~~~~~ 104 (317)
T PF11822_consen 68 EPPSLTPSNVVS----ILISSEFLQMESLVEECLQYCHDHM 104 (317)
T ss_pred CCCcCCcCcEEE----eEehhhhhccHHHHHHHHHHHHHhH
Confidence 355688889888 8999999999999999999998887
No 50
>PHA02790 Kelch-like protein; Provisional
Probab=37.78 E-value=31 Score=39.05 Aligned_cols=46 Identities=11% Similarity=0.071 Sum_probs=40.3
Q ss_pred HHHHHHHhCCCcccEEEEeCCCccceEEEeEEeEeeccChhhhhhhcCCCC
Q psy4929 6 ERFAFMFNNEILCDVHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLA 56 (633)
Q Consensus 6 ~~l~~l~~~~~~sDV~f~v~~~~~~~~f~aHk~VLaa~S~yF~amf~~~~~ 56 (633)
..+-+++.++.+|||++++|+ .|+|||+||||+|+||++||+++|.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~-----~~~~HR~VLAa~S~YFraMF~~~~~ 56 (480)
T PHA02790 11 KNILALSMTKKFKTIIEAIGG-----NIIVNSTILKKLSPYFRTHLRQKYT 56 (480)
T ss_pred hhHHHHHhhhhhceEEEEcCc-----EEeeehhhhhhcCHHHHHHhcCCcc
Confidence 455678888999999998876 7999999999999999999998763
No 51
>KOG1724|consensus
Probab=27.35 E-value=25 Score=34.04 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=28.8
Q ss_pred ecccccCcchHHHHHHhhccCchHHHHHHHHhhhhcC
Q psy4929 320 IRESNLLHGKQILLTTARLFDEPQLAALCLDTIDKNT 356 (633)
Q Consensus 320 l~~~~~~~~~~~lL~~Ad~f~~~~l~~~C~~~L~~~l 356 (633)
+...+|.+ +..||.+++++.|..+||+.+..++
T Consensus 95 ~d~~tLfd----li~AAnyLdi~gLl~~~ck~va~mi 127 (162)
T KOG1724|consen 95 VDQGTLFD----LILAANYLDIKGLLDLTCKTVANMI 127 (162)
T ss_pred cCHHHHHH----HHHHhhhcccHHHHHHHHHHHHHHH
Confidence 44456777 9999999999999999999999887
No 52
>KOG1665|consensus
Probab=20.72 E-value=1e+02 Score=31.55 Aligned_cols=86 Identities=17% Similarity=0.173 Sum_probs=56.9
Q ss_pred cEEEEeCCCccceEEEeEEeEeeccCh--hhhhhhcCCCC---CCCCeEEcCCCCHhhhhhhheecccCcchhhh-----
Q psy4929 19 DVHFIVGRETELQRIPAHRFVLSVGSV--VFDAMFNGTLA---TRSDEIELPDVEPAAFLALLRCSMTGKEQVVH----- 88 (633)
Q Consensus 19 DV~f~v~~~~~~~~f~aHk~VLaa~S~--yF~amf~~~~~---~~~~~I~l~dv~~~~f~~lL~ylYTG~~~~~~----- 88 (633)
=|.+-+|| +.|..-+--|..|-| -..+||.+.-+ ....--.+-|-+|..|+.+|.|+-.|++...+
T Consensus 10 ~vrlnigG----k~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~~s~i~~l 85 (302)
T KOG1665|consen 10 MVRLNIGG----KKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPSLSDIDCL 85 (302)
T ss_pred hheeecCC----eEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCceeecCCccHH
Confidence 36677888 778777766666654 67889987432 33344455688999999999999999886532
Q ss_pred hhhhhccccccCCchhhhhh
Q psy4929 89 RFQHIESRWGYSGTSDRIRF 108 (633)
Q Consensus 89 rfq~la~~w~y~gl~d~i~f 108 (633)
....-+..+++-++.|-++.
T Consensus 86 gvLeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 86 GVLEEARFFQILSLKDHLED 105 (302)
T ss_pred HHHHHhhHHhhHhHHhHHhh
Confidence 23333444555555555544
Done!