RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4929
(633 letters)
>3no8_A BTB/POZ domain-containing protein 2; PHR domain, BTBD1, BTBD2,
PAM-highwire-RPM-1 domain, toposis regulation, protein
structure initiative; 2.20A {Homo sapiens}
Length = 176
Score = 151 bits (383), Expect = 4e-43
Identities = 74/109 (67%), Positives = 90/109 (82%)
Query: 77 RCSMTGKEQVVHRFQHIESRWGYSGTSDRIRFSVDRRIFVVGFGLYGCIHGPTEYDVQMQ 136
RC + GKE ++RFQ +ESRWGYSGTSDRIRFSV++RIFVVGFGLYG IHGPT+Y V +Q
Sbjct: 7 RCCLRGKECSINRFQQVESRWGYSGTSDRIRFSVNKRIFVVGFGLYGSIHGPTDYQVNIQ 66
Query: 137 LVRTANGKVIAGNRTSFACDGSTFTSRVMFKEPVEVMPNISYTACATLK 185
++ T + V+ N T F+CDGS T RVMFKEPVEV+PN++YTACATLK
Sbjct: 67 IIHTDSNTVLGQNDTGFSCDGSASTFRVMFKEPVEVLPNVNYTACATLK 115
Score = 52.7 bits (126), Expect = 4e-08
Identities = 24/34 (70%), Positives = 28/34 (82%)
Query: 575 DGPRCSMTGKEQVVHRFQHIESRWGYSGTSDRIR 608
D PRC + GKE ++RFQ +ESRWGYSGTSDRIR
Sbjct: 4 DRPRCCLRGKECSINRFQQVESRWGYSGTSDRIR 37
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Z
Length = 162
Score = 125 bits (314), Expect = 1e-33
Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 2/126 (1%)
Query: 185 KIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKDLAVDPSFEFAKRRNVPLKYDREFW 244
++F F SKC + F + P K WT YRK KD+ + + +RR Y R
Sbjct: 29 QVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQHKKDIHAEAVKK--RRRTTKKPYSRSIV 86
Query: 245 NKTVEAIKKVEHIKTKRHNLYLAQRLRKAREVETARDIKAVQRDIAILNDPTEVIRAKKK 304
T+E I+K K + + LR+ +E + + + +
Sbjct: 87 GATLEVIQKKRSEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGAT 146
Query: 305 KMVEAG 310
+ G
Sbjct: 147 QRGAKG 152
>3gbw_A E3 ubiquitin-protein ligase mycbp2; MYC-binding protein 2, protein
associated with MYC, PAM, RPM-1, PHR domain, structural
genomics, PSI-2; HET: MSE; 1.32A {Mus musculus}
Length = 164
Score = 123 bits (311), Expect = 4e-33
Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 12/110 (10%)
Query: 85 QVVHRFQHIESRWGYSGTS-DRIRFSVDRRIFVVGFGLYGCIHGPTEYDVQMQLVR---- 139
VV+RF+ WGYS S + IRFS D I + G GL+G G EY +++L
Sbjct: 6 SVVNRFESHGGGWGYSAHSVEAIRFSADTDILLGGLGLFG---GRGEYTAKIKLFELGPD 62
Query: 140 ----TANGKVIAGNRTSFACDGSTFTSRVMFKEPVEVMPNISYTACATLK 185
+G ++A + +MF EPV + Y A A +
Sbjct: 63 GGDHETDGDLLAETDVLAYDCAAREKYAMMFDEPVLLQAGWWYVAWARVS 112
Score = 38.8 bits (90), Expect = 0.001
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 586 QVVHRFQHIESRWGYSGTS-DRIR 608
VV+RF+ WGYS S + IR
Sbjct: 6 SVVNRFESHGGGWGYSAHSVEAIR 29
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z
3o58_V 3o5h_V 3u5e_W 3u5i_W 1s1i_S 2x7n_D
Length = 155
Score = 114 bits (287), Expect = 5e-30
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 3/121 (2%)
Query: 185 KIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKDLAVDPSFEFAKRRNVPLKYDREFW 244
KIFRF SK LFK++KNPR+ AWT +RK K + + + KR +K R
Sbjct: 27 KIFRFQNSKSASLFKQRKNPRRIAWTVLFRKHHKKGITEEVAK---KRSRKTVKAQRPIT 83
Query: 245 NKTVEAIKKVEHIKTKRHNLYLAQRLRKAREVETARDIKAVQRDIAILNDPTEVIRAKKK 304
+++ IK+ +K + ++L+ +E + A + ++
Sbjct: 84 GASLDLIKERRSLKPEVRKANREEKLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQA 143
Query: 305 K 305
K
Sbjct: 144 K 144
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 157
Score = 114 bits (286), Expect = 7e-30
Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 3/125 (2%)
Query: 185 KIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKDLAVDPSFEFAKRRNVPLKYDREFW 244
K+F+F +KC F K+NPR+ WT YR+ K + + KR +K+ R
Sbjct: 27 KVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQ---KKRTRRAVKFQRAIT 83
Query: 245 NKTVEAIKKVEHIKTKRHNLYLAQRLRKAREVETARDIKAVQRDIAILNDPTEVIRAKKK 304
++ I + K + Q +R A+E + A+ A + K
Sbjct: 84 GASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIV 143
Query: 305 KMVEA 309
K V+
Sbjct: 144 KPVKV 148
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_T 4a1c_T 4a1e_T
Length = 158
Score = 106 bits (264), Expect = 6e-27
Identities = 24/125 (19%), Positives = 47/125 (37%), Gaps = 3/125 (2%)
Query: 185 KIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKDLAVDPSFEFAKRRNVPLKYDREFW 244
+ F F K L RK +K WT A R++ K A D + K++ + R
Sbjct: 29 RGFFFLTKKAKCLSLRKVKAQKITWTIARRRLWKKVKATDIA---QKKKKRNVTVARAIV 85
Query: 245 NKTVEAIKKVEHIKTKRHNLYLAQRLRKAREVETARDIKAVQRDIAILNDPTEVIRAKKK 304
++E I + +++ + +R+ ++ + K D +A+ K
Sbjct: 86 GISLEEINRRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETK 145
Query: 305 KMVEA 309
K +
Sbjct: 146 KTKQP 150
>3hwj_A E3 ubiquitin-protein ligase mycbp2; MYC-binding protein 2, PHR
proteins, PHR domain, protein associated with MYC, PAM,
PHR1, structural genomics; 2.25A {Mus musculus}
Length = 172
Score = 103 bits (257), Expect = 1e-25
Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 15/113 (13%)
Query: 87 VHRFQHIES--RWGYS-GTSDRIRFSVDRR-IFVVGFGLYGCIHGPTEYDVQMQLVRTAN 142
++RF W G+ D I F+VD+ I VVGF +YG G EY++++ + + +
Sbjct: 3 LNRFTKTSQGRSWNTGNGSPDAICFAVDKPGIVVVGFAVYG-GGGIHEYELEVLVDDSEH 61
Query: 143 ----------GKVIAGNRTSFACDGSTFTSRVMFKEPVEVMPNISYTACATLK 185
+ T D + + + + V + N+ Y
Sbjct: 62 AGDSTHSHRWTSLELVKGTYTTDDSPSDIAEIRLDKVVPLKENVKYAVRLRNY 114
Score = 28.9 bits (64), Expect = 3.1
Identities = 6/24 (25%), Positives = 9/24 (37%), Gaps = 3/24 (12%)
Query: 588 VHRFQHIES--RWGYS-GTSDRIR 608
++RF W G+ D I
Sbjct: 3 LNRFTKTSQGRSWNTGNGSPDAIC 26
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo
sapiens}
Length = 109
Score = 99 bits (250), Expect = 2e-25
Identities = 40/73 (54%), Positives = 52/73 (71%)
Query: 11 MFNNEILCDVHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLATRSDEIELPDVEPA 70
MFNNE++ DVHF+VG + +PAH++VL+VGS VF AMF G LA EI +PDVEPA
Sbjct: 2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVKSEIHIPDVEPA 61
Query: 71 AFLALLRCSMTGK 83
AFL LL+ + +
Sbjct: 62 AFLILLKYMYSDE 74
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein
binding; 2.40A {Homo sapiens}
Length = 145
Score = 74.1 bits (183), Expect = 6e-16
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 8 FAFMFNNEILCDVHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLA-TRSDEIELPD 66
++ N D V + AH+ +L+ S VF AMF + ++ + +E+ D
Sbjct: 16 LGGLWENSRFTDCCLCVAGQE----FQAHKAILAARSPVFSAMFEHEMEESKKNRVEIND 71
Query: 67 VEPAAFLALLRCSMTGK 83
VEP F ++ TGK
Sbjct: 72 VEPEVFKEMMCFIYTGK 88
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R
1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T*
1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V*
1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...
Length = 66
Score = 71.3 bits (175), Expect = 7e-16
Identities = 10/37 (27%), Positives = 12/37 (32%)
Query: 185 KIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKDL 221
FC SKC + R WT R G+
Sbjct: 27 ATTHFCSSKCENNADLGREARNLEWTDTARGEAGEAE 63
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus,
UBL conjugation pathway, protein binding; 2.50A {Homo
sapiens}
Length = 172
Score = 72.7 bits (179), Expect = 3e-15
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 8 FAFMFNNEILCDVHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLA-TRSDEIELPD 66
++ N D V + AH+ +L+ S VF AMF + ++ + +E+ D
Sbjct: 25 LGGLWENSRFTDCCLCVAGQE----FQAHKAILAARSPVFSAMFEHEMEESKKNRVEIND 80
Query: 67 VEPAAFLALLRCSMTGK 83
VEP F ++ TGK
Sbjct: 81 VEPEVFKEMMCFIYTGK 97
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL
conjugation pathway, protein binding, ligase; 2.62A
{Homo sapiens} PDB: 3hu6_A
Length = 312
Score = 69.9 bits (171), Expect = 3e-13
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 8 FAFMFNNEILCDVHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLA-TRSDEIELPD 66
++ N D V + AH+ +L+ S VF AMF + ++ + +E+ D
Sbjct: 165 LGGLWENSRFTDCCLCVAGQE----FQAHKAILAARSPVFSAMFEHEMEESKKNRVEIND 220
Query: 67 VEPAAFLALLRCSMTGK 83
VEP F ++ TGK
Sbjct: 221 VEPEVFKEMMCFIYTGK 237
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC
domain,transcription factor, protein-PROT interaction;
2.44A {Homo sapiens}
Length = 124
Score = 63.0 bits (154), Expect = 3e-12
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Query: 14 NEILCDVHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLATRSDEIELPDVEPAAFL 73
++LCDV V QR AHR VL+ S F + G + +V F
Sbjct: 26 KDVLCDVTIFVEG----QRFRAHRSVLAACSSYFHSRIVGQADGELNITLPEEVTVKGFE 81
Query: 74 ALL 76
L+
Sbjct: 82 PLI 84
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond,
activator, DNA-binding, nucleus, phosphorylation,
repressor; 2.50A {Mus musculus}
Length = 138
Score = 61.9 bits (151), Expect = 1e-11
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Query: 14 NEILCDVHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLATRSDEIELPDVEPAAFL 73
++LCDV +V QR AHR VL+ S F + G +V F
Sbjct: 33 KDVLCDVTVLVEG----QRFRAHRSVLAACSSYFHSRIVGQTDAELTVTLPEEVTVKGFE 88
Query: 74 ALL 76
L+
Sbjct: 89 PLI 91
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain,
POK, proto oncogene, transcription F transcription;
2.00A {Homo sapiens} PDB: 2nn2_A
Length = 120
Score = 61.0 bits (149), Expect = 1e-11
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 14 NEILCDVHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLA-TRSDEIELPDVEPAAF 72
+LCDV +V + P HR VL+ S F +F + + E+ V A
Sbjct: 22 QGLLCDVVILVEG----REFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEAL 77
Query: 73 LALL 76
AL+
Sbjct: 78 TALM 81
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional
repression, transcription; 1.30A {Homo sapiens} SCOP:
d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Length = 127
Score = 61.1 bits (149), Expect = 1e-11
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 11 MFNNEILCDVHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLA-TRSDEIELPDVEP 69
+ + +IL DV +V R ++ AH+ VL S +F ++F L S P++ P
Sbjct: 23 LRSRDILTDVVIVVSR----EQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINP 78
Query: 70 AAFLALL 76
F LL
Sbjct: 79 EGFNILL 85
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A
{Homo sapiens} PDB: 3ohv_A
Length = 125
Score = 60.3 bits (147), Expect = 3e-11
Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 14 NEILCDVHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLATRSDEIELPDVEPAAFL 73
+ILCDV IV R + AHR VL+ S F G +V F
Sbjct: 29 KDILCDVTLIVER----KEFRAHRAVLAACSEYFWQALVGQTKNDLVVSLPEEVTARGFG 84
Query: 74 ALL 76
LL
Sbjct: 85 PLL 87
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics,
struct genomics consortium, SGC, structural protein;
2.40A {Homo sapiens}
Length = 144
Score = 60.4 bits (147), Expect = 4e-11
Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 7/69 (10%)
Query: 11 MFNNEILCDVHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLA---TRSDEIELPDV 67
CD H ++ + IP + +L+ S N + +IEL +
Sbjct: 41 FREESRFCDAHLVLDG----EEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGI 96
Query: 68 EPAAFLALL 76
+L
Sbjct: 97 SVMVMREIL 105
>3jyw_S 60S ribosomal protein L24(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus}
Length = 45
Score = 56.6 bits (137), Expect = 7e-11
Identities = 17/26 (65%), Positives = 20/26 (76%)
Query: 185 KIFRFCRSKCHKLFKRKKNPRKTAWT 210
KIFRF SK LFK++KNPR+ AWT
Sbjct: 20 KIFRFQNSKSASLFKQRKNPRRIAWT 45
>2vpk_A Myoneurin; transcription regulation, transcription,
metal-binding, alternative splicing, zinc, nucleus, BTB
domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Length = 116
Score = 58.4 bits (142), Expect = 1e-10
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 14 NEILCDVHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLATRSDEIELPDVEPAAFL 73
LCD ++G + AHR VL+ S F A++ T + ++ V+ F
Sbjct: 19 AGFLCDCTIVIGE----FQFKAHRNVLASFSEYFGAIYRSTSE-NNVFLDQSQVKADGFQ 73
Query: 74 ALL 76
LL
Sbjct: 74 KLL 76
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.9 bits (152), Expect = 2e-10
Identities = 77/571 (13%), Positives = 153/571 (26%), Gaps = 191/571 (33%)
Query: 126 HGPTEYDV-QMQLVRTANGKVIAGNRTSFA----C-DGSTFTSRVMFKEPVEVMPNISYT 179
H +++ + Q +++ +F C D ++ KE ++ +
Sbjct: 4 HHHMDFETGEHQY---QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60
Query: 180 ACATLKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKDLAVDPSFEFAKRRNVPLKY 239
TL++F K+ + +K + L ++ Y
Sbjct: 61 VSGTLRLF--------WTLLSKQE-------EMVQKFVEEVLRIN--------------Y 91
Query: 240 DREFWNKTVEAIKKVEHIKTKRHNLYLAQRLRKAREVETARDIKAVQRDIAILNDPTEVI 299
+ + IK + + +Y+ QR R + D + V
Sbjct: 92 K---F--LMSPIKTEQRQPSMMTRMYIEQRDR-------------LYNDNQVF-AKYNVS 132
Query: 300 RAKKKKMVEAGIVEEIHE--MQIRESN--LLHG-----KQILLTTARLFDEPQLAALC-- 348
R + ++ + +++R + L+ G K + +
Sbjct: 133 RLQP--------YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV-CLSYKVQCKMDFK 183
Query: 349 ---LDTIDKNTPDALAADGFTDKVVTLSSFSSSDGRKPSAPDSRCRSRLSANPGIEPSAW 405
L+ + N+P+ + + + L D S D +L + +
Sbjct: 184 IFWLNLKNCNSPETV-----LEMLQKL--LYQIDPNWTSRSDHSSNIKLRIH------SI 230
Query: 406 QANLTYHCAPARLFDEPQL--AALCLD--------------------TIDKNTPDALAA- 442
QA L RL L L T K D L+A
Sbjct: 231 QAELR------RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284
Query: 443 -----------DGFTDVDRDTLCA-VLE--RDTLRIREAK--------LFQAVIR----- 475
T + +L L+ L RE + IR
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP-REVLTTNPRRLSIIAESIRDGLAT 343
Query: 476 ---WSEAECTRQSLPITPENQRAVLGPSLTLVRFPLMSVEEFAAG---PAQSGLLEDSQL 529
W C + + I E+ VL P+ F +SV F P L
Sbjct: 344 WDNWKHVNCDKLTTII--ESSLNVLEPAEYRKMFDRLSV--FPPSAHIPTIL-------L 392
Query: 530 VRLFL---YFHVEEFAAGPAQSGLLE---DSQLVRLF-LYFHVNPKPA---------IPF 573
++ V + L+E + + +Y + K +
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 574 FDGPRCSMTGKEQVVHR----FQHIESRWGY 600
++ P+ + + + HI G+
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHI----GH 479
Score = 49.1 bits (116), Expect = 4e-06
Identities = 75/589 (12%), Positives = 157/589 (26%), Gaps = 186/589 (31%)
Query: 11 MFN-NEILCDVHFIVGRETELQRIPAHRFVLSVGS-VVFDAMFNG----TLAT---RSDE 61
++N N++ + V R ++ L V+ D + G +A S +
Sbjct: 119 LYNDNQVFAKYN--VSRLQPYLKLRQALLELRPAKNVLIDGVL-GSGKTWVALDVCLSYK 175
Query: 62 IELPDVEPAAFLALLRCSMTGK--EQVVHRFQHIESRW-GYSGTSDRIRFSVD------R 112
++ +L L C+ E + I+ W S S I+ + R
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 113 RIF--------------------VVGFGLYGCIHGPTEYDVQMQLVRTANGKVIAGNRTS 152
R+ F L C ++ L+ T +V
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNL-SC---------KI-LLTTRFKQVT------ 278
Query: 153 FACDGSTFTSRVMFKEPVEVMPNISYTACATLKIF-RFCRSKCHKLFKRKKNPRKTAWTK 211
F S +++ T + ++ + L PR
Sbjct: 279 ------DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL------PR------ 320
Query: 212 AYRKVRGKDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRHNLYLAQRLR 271
+ + S R+ +D W +H+ + L +
Sbjct: 321 --EVLTTNPRRL--SIIAESIRDGLATWDN--W----------KHVNCDK----LTTIIE 360
Query: 272 KAREVETARDIKAVQRDIAILND----PTEVIR---AKKKKMVEAGIVEEIH-----EMQ 319
+ V + + + +++ PT ++ K +V ++H E Q
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 320 IRESNL-LHGKQILLTTARLFDEPQLAALCLDTIDKNTPDALAADGFTDKVVTLSSFSSS 378
+ES + + + L +L +E L +D N P +D +
Sbjct: 421 PKESTISIPSIYLELK-VKLENEYALHRSIVDHY--NIPKTFDSDDLIPPYL-------- 469
Query: 379 DGRKPSAPDSRCRSRLSANPGIEPSAWQANLTYHCAPARLFDEPQL------------AA 426
D + +++ +H + L
Sbjct: 470 DQY-----------------------FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506
Query: 427 LCLDTIDKNTPDALAADGFTDVD--RDTLCAVLERDTLRIREAKLFQAVIRWSEAECTRQ 484
+ D+ N ++ + + + +C + + F
Sbjct: 507 IRHDSTAWNASGSIL-NTLQQLKFYKPYICDNDPKYERLVNAILDF-------------- 551
Query: 485 SLPITPENQRAVLGPSLTLVRFPLMSVEEFAAGPAQSGLLEDS--QLVR 531
LP EN + L+R LM + E++ Q+ R
Sbjct: 552 -LPKIEEN--LICSKYTDLLRIALM--------AEDEAIFEEAHKQVQR 589
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel
related zinc finger protein 3, HKR3, ZBTB48, Z finger,
oncogene; 1.74A {Homo sapiens}
Length = 119
Score = 57.2 bits (139), Expect = 2e-10
Identities = 15/63 (23%), Positives = 20/63 (31%), Gaps = 7/63 (11%)
Query: 14 NEILCDVHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLATRSDEIELPDVEPAAFL 73
CD VG AH VL+ S F +++ + LP F
Sbjct: 21 KGQYCDATLDVGG----LVFKAHWSVLACCSHFFQSLYGD---GSGGSVVLPAGFAEIFG 73
Query: 74 ALL 76
LL
Sbjct: 74 LLL 76
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote;
protein-protein interaction domain, transcriptional
represso finger protein; 1.90A {Homo sapiens} SCOP:
d.42.1.1 PDB: 1cs3_A
Length = 121
Score = 57.2 bits (139), Expect = 2e-10
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 14 NEILCDVHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLATRSDEIELPDVEPAAFL 73
LCDV +V Q AHR VL+ S +F+ +F+ S L + P F
Sbjct: 25 AGTLCDVVIMVDS----QEFHAHRTVLACTSKMFEILFHR----NSQHYTLDFLSPKTFQ 76
Query: 74 ALL 76
+L
Sbjct: 77 QIL 79
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3,
structural genomics, NPPSFA; 2.60A {Mus musculus}
Length = 135
Score = 57.6 bits (140), Expect = 3e-10
Identities = 15/63 (23%), Positives = 19/63 (30%), Gaps = 7/63 (11%)
Query: 14 NEILCDVHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLATRSDEIELPDVEPAAFL 73
CD VG AH VL+ S F ++ + LP F
Sbjct: 22 KGQYCDATLDVGG----LVFKAHWSVLACCSHFFQRIYGDGT---GGSVVLPAGFAEIFG 74
Query: 74 ALL 76
LL
Sbjct: 75 LLL 77
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A
{Homo sapiens} PDB: 3m52_A
Length = 119
Score = 56.9 bits (138), Expect = 4e-10
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 8/63 (12%)
Query: 14 NEILCDVHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLATRSDEIELPDVEPAAFL 73
+LCD F+V AH+ VL+ S F +F + D + L A
Sbjct: 24 LGLLCDCTFVVDG----VHFKAHKAVLAACSEYFKMLF----VDQKDVVHLDISNAAGLG 75
Query: 74 ALL 76
+L
Sbjct: 76 QVL 78
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation,
kelch repeat, neurodegeneration, phosphoprotein,
polymorphism, UBL conjugation; 2.80A {Homo sapiens}
PDB: 3hve_B
Length = 256
Score = 59.9 bits (146), Expect = 4e-10
Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 7/69 (10%)
Query: 11 MFNNEILCDVHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLA---TRSDEIELPDV 67
CD H ++ + IP + +L+ S N + +IEL +
Sbjct: 25 FREESRFCDAHLVLDG----EEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGI 80
Query: 68 EPAAFLALL 76
+L
Sbjct: 81 SVMVMREIL 89
Score = 44.9 bits (107), Expect = 3e-05
Identities = 15/100 (15%), Positives = 38/100 (38%), Gaps = 10/100 (10%)
Query: 416 ARLFDEPQLAALCLDTIDKNTPDALAADGFTDVDRDTLCAVLERDTLRIR-EAKLFQAVI 474
A + + L + ++ + D + + F ++ L V+ + L + E +F+AVI
Sbjct: 143 ALHYCLHHVHYLATEYLETHFRDVSSTEEFLELSPQKLKEVISLEKLNVGNERYVFEAVI 202
Query: 475 RWSEAECTRQSLPITPENQRAVLGPSLTLVRFPLMSVEEF 514
RW + E ++ + ++ + +
Sbjct: 203 RWIAHD---------TEIRKVHMKDVMSALWVSGLDSSYL 233
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain
containing 33, kaiso transcriptio ZNF-kaiso,
ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB:
3m4t_A 3m8v_A
Length = 116
Score = 56.5 bits (137), Expect = 4e-10
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 14 NEILCDVHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLATRSDEIELPDVEPAAFL 73
+ + CDV IV ++ AH+ +LS S F +F+ +EL + F
Sbjct: 28 HGLFCDVTVIVED----RKFRAHKNILSASSTYFHQLFSV----AGQVVELSFIRAEIFA 79
Query: 74 ALL 76
+L
Sbjct: 80 EIL 82
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC,
structural genomics consortium, kelch repeat, secreted,
protein binding; 2.60A {Homo sapiens}
Length = 279
Score = 54.2 bits (131), Expect = 4e-08
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 8/73 (10%)
Query: 11 MFNNEILCDVHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLA-TRSDEIELPD--- 66
+ CD+ + + AHR VL+ + F + +G + +RS +E+
Sbjct: 26 QRRQGLFCDIT-LCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSS 84
Query: 67 ---VEPAAFLALL 76
EP A++
Sbjct: 85 EPGPEPDTVEAVI 97
Score = 45.3 bits (108), Expect = 3e-05
Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 10/100 (10%)
Query: 416 ARLFDEPQLAALCLDTIDKNTPDALAADGFTDVDRDTLCAVLERDTLRIR-EAKLFQAVI 474
A ++ QLA D I +N + + F + + L + + E LF+ V+
Sbjct: 151 AHMYTLSQLALKAADMIRRNFHKVIQDEEFYTLPFHLIRDWLSDLEITVDSEEVLFETVL 210
Query: 475 RWSEAECTRQSLPITPENQRAVLGPSLTLVRFPLMSVEEF 514
+W + E + L+R M
Sbjct: 211 KWVQRN---------AEERERYFEELFKLLRLSQMKPTYL 241
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain,
phosphoprotein, repressor, transcri transcription
regulation; 2.10A {Homo sapiens}
Length = 129
Score = 50.3 bits (121), Expect = 8e-08
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 16 ILCDVHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLATRSDEIELP-DVEPAAFLA 74
+ CDV +V AHR VL+ S F +FN +RS +ELP V+P +F
Sbjct: 32 LYCDVSVVVKG----HAFKAHRAVLAASSSYFRDLFNN---SRSAVVELPAAVQPQSFQQ 84
Query: 75 LLRCSMTGK 83
+L TG+
Sbjct: 85 ILSFCYTGR 93
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain,
BTB/POZ domain, ZBTB32, zinc finger domain-containing
protein 32; 2.00A {Homo sapiens}
Length = 119
Score = 49.2 bits (118), Expect = 2e-07
Identities = 16/63 (25%), Positives = 19/63 (30%), Gaps = 12/63 (19%)
Query: 14 NEILCDVHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLATRSDEIELPDVEPAAFL 73
LCD VG Q PAH VL+ S + P+ F
Sbjct: 27 RPALCDTLITVGS----QEFPAHSLVLAGVSQQLGRRG--------QWALGEGISPSTFA 74
Query: 74 ALL 76
LL
Sbjct: 75 QLL 77
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.1 bits (127), Expect = 2e-07
Identities = 86/531 (16%), Positives = 148/531 (27%), Gaps = 175/531 (32%)
Query: 228 EFAKRRNVPLKYDREFWNKTVEAIKKVE-------HIKTKRHNLYLAQR---LRKA-REV 276
+F K P F E E ++ + + Q L E
Sbjct: 36 QFNKILPEP---TEGFAADD-EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF 91
Query: 277 ETA----RDIKAVQRDIAILNDPTEVIRAKKKKMV----EAGIVEEIHEMQIRESNLLHG 328
E DI A+ A L + K K+++ A I+ + + S L
Sbjct: 92 ENCYLEGNDIHAL---AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA 148
Query: 329 KQILLTTARL-------------FDE---------PQLAALC------LDTIDKNTPDAL 360
A+L F+E + L L + + T DA
Sbjct: 149 VGE--GNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDA- 205
Query: 361 AADGFTDKVVTLSSFSSSDGRKP------SAPDSRCRSRLSANPGIEPSAWQ-ANLTYHC 413
+ + + + + + P S P S C P I Q A+
Sbjct: 206 --EKVFTQGLNILEWLENPSNTPDKDYLLSIPIS-C-------PLI--GVIQLAHYVVTA 253
Query: 414 -----APARLFDEPQ---------LAALCL---DTID---KNTPDALAA---------DG 444
P L + + A+ + D+ + + A+ +
Sbjct: 254 KLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEA 313
Query: 445 FTDVDRDTLCAVLERDTLRIREAK---------LFQAVIRWSEAECTRQSLP------IT 489
+ +L + D+L E L Q ++ T LP I+
Sbjct: 314 Y---PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ-DYVNKTNSHLPAGKQVEIS 369
Query: 490 PEN--QRAVL-GPSLTLVRFPLMSVEEFAAGPA--QSGLLEDSQ----LVRLFLY----F 536
N + V+ GP +L L ++ + A QS + S+ FL F
Sbjct: 370 LVNGAKNLVVSGPPQSLYGLNL-TLRKAKAPSGLDQSRI-PFSERKLKFSNRFLPVASPF 427
Query: 537 HVEEFAAGPAQSGLLEDSQLVRLFLYFHVNPKPAIPFFDGPRCSMTGK------EQVVHR 590
H PA + +D LV+ + F+ IP +D + G + R
Sbjct: 428 HSHLLV--PASDLINKD--LVKNNVSFNAK-DIQIPVYD----TFDGSDLRVLSGSISER 478
Query: 591 -FQHIES---RW-----------------GYSGTSDRIRGLIEGAVIREVL 620
I +W G SG +G +R ++
Sbjct: 479 IVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIV 529
Score = 50.0 bits (119), Expect = 2e-06
Identities = 73/436 (16%), Positives = 120/436 (27%), Gaps = 145/436 (33%)
Query: 262 HNLYL-AQRLRKAREVETARDIKAVQRDIAILNDPTEVI----R-----AKKKKMVEAGI 311
+ A +L++ + + + A ++PT + + + + G
Sbjct: 24 TASFFIASQLQE----QFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQ 79
Query: 312 VEEIHEMQIR--ESNLLHGKQILLTTARLFDEPQ-------------LAALCL--DTIDK 354
+++ + + E+ L G I A+L E + A + DK
Sbjct: 80 FDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDK 139
Query: 355 NTPDAL---AADG-------F--------------------TDKVVTLSSFSSSDGRKPS 384
+ AL +G F V L FS+ +
Sbjct: 140 KSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELI 199
Query: 385 APDSRCRSRLSANPGIEPSAW------QANLTYHC-APARLFDEP-----QLA---ALC- 428
+ G+ W + Y P P QLA
Sbjct: 200 RTTLDAEKVFTQ--GLNILEWLENPSNTPDKDYLLSIPISC---PLIGVIQLAHYVVTAK 254
Query: 429 -LDTIDKNTPDALAAD--GFTDVDRDTLCAVLERDTLRIREAK----LFQAVIR------ 475
L TP L + G T + + AV I E F +V +
Sbjct: 255 LLGF----TPGELRSYLKGATGHSQGLVTAVA------IAETDSWESFFVSVRKAITVLF 304
Query: 476 WSEAECT----RQSLPIT-----PENQRAVLGPSLTLVRFPLMSVEEFAAGPAQSGLLED 526
+ C SLP + EN V P L++ V+++ L
Sbjct: 305 FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH--LPA 362
Query: 527 SQLVRLFLY-----FHVEEFAAGPAQSGLLEDSQLVRLFLYFHVNPKPA------IPFFD 575
+ V + L V +GP QS L L L P+ IPF
Sbjct: 363 GKQVEISLVNGAKNLVV----SGPPQS-------LYGLNLTLRKAKAPSGLDQSRIPF-- 409
Query: 576 GPRCSMTGKEQVVHRF 591
R K + +RF
Sbjct: 410 SER-----KLKFSNRF 420
Score = 44.7 bits (105), Expect = 1e-04
Identities = 47/278 (16%), Positives = 85/278 (30%), Gaps = 98/278 (35%)
Query: 418 LFDEPQLAALCLDTIDKNTPDALAADGF--TDVDRD--TLCAVLE--RDTLRIRE---AK 468
L+ + A + D + D GF D+ + + RIRE A
Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTY---GFSILDIVINNPVNLTIHFGGEKGKRIRENYSAM 1691
Query: 469 LFQAVIRWSE------AECTRQSLPITPENQRAVLG------PSLTLVR---FPLM---- 509
+F+ ++ E S T +++ +L P+LTL+ F +
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKG 1751
Query: 510 -----------SVEEFAAGPAQSGLL--EDS-QLVR---LFLYFHVEEFAAGPAQSGLLE 552
S+ E+AA + + ++ E ++V + + V G + G++
Sbjct: 1752 LIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIA 1811
Query: 553 DSQLVRLFLYFHVNPKPAIPFFDGPR--------CSMTGK-----------EQVVHRFQH 593
+NP F TG +Q V
Sbjct: 1812 ------------INPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYV----- 1854
Query: 594 IESRWGYSGTSDRIRGLIEGAVIREVLLFIVPKSKRQD 631
+G +R L + VL FI K ++ D
Sbjct: 1855 A------AGD---LRAL---DTVTNVLNFI--KLQKID 1878
Score = 43.5 bits (102), Expect = 2e-04
Identities = 59/334 (17%), Positives = 93/334 (27%), Gaps = 95/334 (28%)
Query: 321 RESNLLHGK---QILLTTARLFDEPQLAALCLDTIDKNTPDALAADGFTDKVVTL-SSFS 376
R L HG +L+ TA F QL + + T + AAD L F
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPT-EGFAADDEPTTPAELVGKFL 65
Query: 377 S--SDGRKPSAPDSRCRSRLSANPGIEPSAWQANLTY------HCAPARLFDEPQLAALC 428
S +PS + + + Y H A+L E +
Sbjct: 66 GYVSSLVEPSKVGQF-------DQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK 118
Query: 429 LDTIDKNTPDALAADGFTDVDRDTLCAVLERDTLRIREAKLFQAVIRWSEAECTRQSLPI 488
+ KN + A + +R + + LF+AV A+
Sbjct: 119 TKELIKN---YITA-----------RIMAKRPFDKKSNSALFRAVGE-GNAQLV------ 157
Query: 489 TPENQRAVLGPSLTLVRFPLMSVEEFAAGPAQSGLLED--SQLVRLF-LYFH-VEEF--A 542
A+ G G Q G +D +L L+ Y V +
Sbjct: 158 ------AIFG------------------G--Q-GNTDDYFEELRDLYQTYHVLVGDLIKF 190
Query: 543 AGPAQSGLLEDSQLVRLFLYFHV--------NP--KPAIPFFDGPRCSMT--GKEQVVH- 589
+ S L+ + ++ NP P + S G Q+ H
Sbjct: 191 SAETLSELIRTTLDAE-KVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHY 249
Query: 590 -------RFQHIESRWGYSGTSDRIRGLIEGAVI 616
F E R G + +GL+ I
Sbjct: 250 VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI 283
Score = 42.0 bits (98), Expect = 7e-04
Identities = 42/293 (14%), Positives = 83/293 (28%), Gaps = 105/293 (35%)
Query: 101 GTSDRIRFSVDRRIF---------VVGFGLYGCI-HGPTEYDVQMQLVRTANGKVIAGNR 150
G + ++ GF + + + P + GK I N
Sbjct: 1632 GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTI---HFGGEKGKRIRENY 1688
Query: 151 TSFAC----DGST-----F------TSRVMFKEPVEVMPNISYT--ACATLK--IFRFCR 191
++ DG F ++ F+ ++ +T A ++ F +
Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLK 1748
Query: 192 SKC----------H---------------------KL-FKR-----KKNPRKTAWTKAYR 214
SK H ++ F R PR Y
Sbjct: 1749 SKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYG 1808
Query: 215 KVRGKDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKR------HNLYLAQ 268
+ A++P V + +E VE + K +T +N+ Q
Sbjct: 1809 MI-----AINPG-------RVAASFSQEALQYVVERVGK----RTGWLVEIVNYNVENQQ 1852
Query: 269 RLRKAREVETARDIKAVQRDIAILNDPTEVIRAKKKKMV---EAGIVEEIHEM 318
A D++A+ +LN I+ +K ++ ++ +EE+
Sbjct: 1853 -------YVAAGDLRALDTVTNVLN----FIKLQKIDIIELQKSLSLEEVEGH 1894
Score = 30.0 bits (67), Expect = 3.2
Identities = 20/83 (24%), Positives = 28/83 (33%), Gaps = 24/83 (28%)
Query: 126 HGPTEYDVQMQLVRTANGKVIAGN-----------RTSFACDGSTFTSRVMFKE------ 168
H P V++ LV A V++G R + A G SR+ F E
Sbjct: 359 HLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD-QSRIPFSERKLKFS 417
Query: 169 ----PVEVMP-NISYTACATLKI 186
PV P + A+ I
Sbjct: 418 NRFLPVAS-PFHSHLLVPASDLI 439
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.53
Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 4/31 (12%)
Query: 371 TLSSFSSSDGRKPSAPDSRCRSRLSANPGIE 401
L +S K A DS L+ +E
Sbjct: 21 ALKKLQAS--LKLYADDS--APALAIKATME 47
Score = 29.1 bits (64), Expect = 2.5
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 13/37 (35%)
Query: 249 EAIKKVE-HIKTKRHNLYLAQRLRKAREVETARDIKA 284
+A+KK++ +K LY A + A IKA
Sbjct: 20 QALKKLQASLK-----LY-------ADDSAPALAIKA 44
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 105
Score = 29.9 bits (68), Expect = 0.67
Identities = 7/61 (11%), Positives = 16/61 (26%), Gaps = 2/61 (3%)
Query: 416 ARLFDEPQLAALCLDTIDKNTPDALAADGFTDVDRDTLCAVLERDTLRIREAKLFQAVIR 475
A +P+L + + F + L ++ +A+
Sbjct: 20 ADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPHRLLTDIISDGVPC--SQNPTEAIEA 77
Query: 476 W 476
W
Sbjct: 78 W 78
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 30.2 bits (68), Expect = 3.0
Identities = 14/56 (25%), Positives = 19/56 (33%), Gaps = 18/56 (32%)
Query: 471 QAVIRWSEAECTRQSLPITPENQRAVLGPSLTLVRFPLMSVEEFAAGPAQSGLLED 526
+A+I + I + LG L + P FAA P Q LE
Sbjct: 547 EALIEF-----------IYDTEKNGGLGWDLDAI-IP------FAAIPEQGIELEH 584
>3ld2_A SMU.2055, putative acetyltransferase; HET: COA; 2.50A
{Streptococcus mutans}
Length = 197
Score = 28.3 bits (63), Expect = 7.0
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 468 KLFQAVIRWSEAECTRQSLPITPENQRAV 496
L Q + +++ + + + NQ AV
Sbjct: 129 ALVQIFLNEVKSDYQKVLIHVLSSNQEAV 157
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown
function; 2.10A {Bifidobacterium adolescentis atcc
1570ORGANISM_TAXID}
Length = 440
Score = 28.3 bits (63), Expect = 8.1
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 12/81 (14%)
Query: 217 RGKDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRHNLYLAQRLRKAREV 276
+GK F++A + + + + V HI + Q L R +
Sbjct: 190 QGKMEWAQEEFDYALKEGLGPRKEHL------IPWMHVSHITEVMRD---RQALAIVRAL 240
Query: 277 ETARDIKAVQRDIA---ILND 294
T RD A + DIA +L+D
Sbjct: 241 WTRRDELAREYDIAPTLLLSD 261
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.408
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,839,641
Number of extensions: 611564
Number of successful extensions: 1219
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1168
Number of HSP's successfully gapped: 54
Length of query: 633
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 534
Effective length of database: 3,937,614
Effective search space: 2102685876
Effective search space used: 2102685876
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (26.7 bits)